RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DSG2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044393

Ensembl transcript IDs: ENSMUST00000059787.15, ENSMUST00000120102.8, ENSMUST00000121837.2

Found 308 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGAACCCTTTATATACACCAGATTGGCCTCGAACCCGGAGAGATTTaGCTGCTTCTTGAGTTCTGGACTAAAGGCCTGCACCACCACACC +
Preference number: 1 (lower is better)
Translates to: GTLYIHQIGLEPGEI*LLLEFWTKGLHHHT
Trigger: GGTGTGGTGGTGCAGGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAATCTGGTGTATATAAAGGGTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR TCA 90 bp GAGGATGCAAGAGTGGAACTCGGCTGCTCACTAACCACTCAACTGTaGGTGCAATGTCTTTGGAGTCCATTAGAGAGCATCAGATCCCTT +
Preference number: 1 (lower is better)
Translates to: EDARVELGCSLTTQL*VQCLWSPLESIRSL
Trigger: AAGGGATCTGATGCTCTCTAATGGACTCCAAAGACATTGCACTCACAGTTGAGTGGTTAGTGAGCAGCCGAGTTCCACTCTTGCATCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CCA 90 bp ACAGTGCTGAATATTAAACTTGGAGCCTTGACCAGAACCTTGTCTTaGCTTCATCCTTCTCTAGCCCCGCCCCCTGTCTCTTTCATTTCC +
Preference number: 1 (lower is better)
Translates to: TVLNIKLGALTRTLS*LHPSLAPPPVSFIS
Trigger: GGAAATGAAAGAGACAGGGGGCGGGGCTAGAGAAGGATGAAGCCAAGACAAGGTTCTGGTCAAGGCTCCAAGTTTAATATTCAGCACTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR CCA 90 bp TGTACTCAGGGTTCCAGTGGAGATGAAAGAGTGGAGATGTGTCTCTaGGTGGATGAGCTATTTGGTACCTATAACCTGTGTGGCTCTGTA +
Preference number: 1 (lower is better)
Translates to: CTQGSSGDERVEMCL*VDELFGTYNLCGSV
Trigger: TACAGAGCCACACAGGTTATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCCACTGGAACCCTGAGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CCA 90 bp TTTCTTCCCTCTGGTGTACTCAGGGTTCCAGTGGAGATGAAAGAGTaGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATAACC +
Preference number: 1 (lower is better)
Translates to: FLPSGVLRVPVEMKE*RCVSGWMSYLVPIT
Trigger: GGTTATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCCACTGGAACCCTGAGTACACCAGAGGGAAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CCA 90 bp TCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTCCCTCTaGTGTACTCAGGGTTCCAGTGGAGATGAAAGAGTGGAGATGTGT +
Preference number: 1 (lower is better)
Translates to: SLSLSLSLSFFLSSL*CTQGSSGDERVEMC
Trigger: ACACATCTCCACTCTTTCATCTCCACTGGAACCCTGAGTACACCAGAGGGAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR TCA 90 bp TTGCCTTCACAGAGGATCCCTTTCAGGAAGCTCAGCTATTCACCATaGCAGTTATCAATTGCTATGAAGAAATGCATTGAGTGCATAGTC +
Preference number: 1 (lower is better)
Translates to: LPSQRIPFRKLSYSP*QLSIAMKKCIECIV
Trigger: GACTATGCACTCAATGCATTTCTTCATAGCAATTGATAACTGTCATGGTGAATAGCTGAGCTTCCTGAAAGGGATCCTCTGTGAAGGCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR GCA 90 bp TCTGTTGCTTTTAACTACTGGACCTTGTATCTTAAACAGATTGGTTaGCTTCACAGAGGATCCCTTTCAGGAAGCTCAGCTATTCACCAT +
Preference number: 1 (lower is better)
Translates to: SVAFNYWTLYLKQIG*LHRGSLSGSSAIHH
Trigger: ATGGTGAATAGCTGAGCTTCCTGAAAGGGATCCTCTGTGAAGGCAACCAATCTGTTTAAGATACAAGGTCCAGTAGTTAAAAGCAACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR CCA 90 bp AGCATTGCTGAAATACAACCCTACCTGAGACATGGTGTCTTTGTTTaGCATGTCAATAAGTTTTTCCAATGTGCAAGTCTTGTGTGGCTG +
Preference number: 1 (lower is better)
Translates to: SIAEIQPYLRHGVFV*HVNKFFQCASLVWL
Trigger: CAGCCACACAAGACTTGCACATTGGAAAAACTTATTGACATGCCAAACAAAGACACCATGTCTCAGGTAGGGTTGTATTTCAGCAATGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR TCA 90 bp CCATCCCCCAATAATCACAGAGCATTGCTGAAATACAACCCTACCTaGGACATGGTGTCTTTGTTTGGCATGTCAATAAGTTTTTCCAAT +
Preference number: 1 (lower is better)
Translates to: PSPNNHRALLKYNPT*DMVSLFGMSISFSN
Trigger: ATTGGAAAAACTTATTGACATGCCAAACAAAGACACCATGTCTCAGGTAGGGTTGTATTTCAGCAATGCTCTGTGATTATTGGGGGATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 90 bp CACATGGGATGTATTTATAATTCCACACAGTGGTGTAATTCCTGCTaGACACCTGGTAAAATAACATCAGCTACAAAGAAAATGAAAGCA +
Preference number: 1 (lower is better)
Translates to: HMGCIYNSTQWCNSC*TPGKITSATKKMKA
Trigger: TGCTTTCATTTTCTTTGTAGCTGATGTTATTTTACCAGGTGTGCAGCAGGAATTACACCACTGTGTGGAATTATAAATACATCCCATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 90 bp CTTGTAGATAGGAAACAGATCTATGAAGACGTTTCCTTCATAGACTaGCATCACATTGCAGAAAAGTTAACTAGGAATTTTATCCTGGAT +
Preference number: 1 (lower is better)
Translates to: LVDRKQIYEDVSFID*HHIAEKLTRNFILD
Trigger: ATCCAGGATAAAATTCCTAGTTAACTTTTCTGCAATGTGATGGCAGTCTATGAAGGAAACGTCTTCATAGATCTGTTTCCTATCTACAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 90 bp TTGCACATGGGATGTATTTATAATTCCACACAGTGGTGTAATTCCTaGTGCACACCTGGTAAAATAACATCAGCTACAAAGAAAATGAAA +
Preference number: 1 (lower is better)
Translates to: LHMGCIYNSTQWCNS*CTPGKITSATKKMK
Trigger: TTTCATTTTCTTTGTAGCTGATGTTATTTTACCAGGTGTGCAGCAGGAATTACACCACTGTGTGGAATTATAAATACATCCCATGTGCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 90 bp CAATTTGGTATTTCTAGAAAATATGCACATCAAGTTGTAAAGACTTaGTCTCAGCGTCCTCAGTCTCTTCGTGTACCATATAATAGTGTT +
Preference number: 1 (lower is better)
Translates to: QFGISRKYAHQVVKT*SQRPQSLRVPYNSV
Trigger: AACACTATTATATGGTACACGAAGAGACTGAGGACGCTGAGAGCAAGTCTTTACAACTTGATGTGCATATTTTCTAGAAATACCAAATTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR GCA 90 bp TTGGGCCAGTTACTCAAGGGTTTTTATGATAAAGTATTTACTTCATaGATATCAACTCATGACCAGCCAATTATGTCAGATATCAAGATG +
Preference number: 1 (lower is better)
Translates to: LGQLLKGFYDKVFTS*ISTHDQPIMSDIKM
Trigger: CATCTTGATATCTGACATAATTGGCTGGTCATGAGTTGATATGCATGAAGTAAATACTTTATCATAAAAACCCTTGAGTAACTGGCCCAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CAA 90 bp ATATACACCAGATTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTaGAGTTCTGGACTAAAGGCCTGCACCACCACACCTGGCTATCAT +
Preference number: 2 (lower is better)
Translates to: IYTRLASNPERFACF*SSGLKACTTTPGYH
Trigger: ATGATAGCCAGGTGTGGTGGTGCAGGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAATCTGGTGTATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR GCA 90 bp CCCTCTGGTGTACTCAGGGTTCCAGTGGAGATGAAAGAGTGGAGATGTGTCTCTCCTGCTGAATATCAATaGATTGTGCAGAGACCCAGC +
Preference number: 2 (lower is better)
Translates to: PSGVLRVPVEMKEWRCVSPAEYQ*IVQRPS
Trigger: GCTGGGTCTCTGCACAATGCATTGATATTCAGCAGG...AGAGACACATCTCCACTCTTTCATCTCCACTGGAACCCTGAGTACACCAGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR GCA 90 bp CAGGGATGGTTTGAGTCCTGGTTTTCCACTTCCCCAGGGCTTACAACCTTGATTCACTGCTTGGAAGTGTaGTATGCAAGGTTGTGTGCC +
Preference number: 2 (lower is better)
Translates to: QGWFESWFSTSPGLTTLIHCLEV*YARLCA
Trigger: GGCACACAACCTTGCATAGCACACTTCCAAGCAGTG...AATCAAGGTTGTAAGCCCTGGGGAAGTGGAAAACCAGGACTCAAACCATCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR TCA 90 bp GAGACAGGGTTTTTCTATGTAGCCCTGGGTGTCCTGGAACCCTTTATATACACCGGGTTCCAGTGGAGATaGAAGAGTGGAGATGTGTCT +
Preference number: 2 (lower is better)
Translates to: ETGFFYVALGVLEPFIYTGFQWR*KSGDVS
Trigger: AGACACATCTCCACTCTTTCATCTCCACTGGAACCC...GGTGTATATAAAGGGTTCCAGGACACCCAGGGCTACATAGAAAAACCCTGTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CAA 90 bp ATAAACACAGTGCTGAATATTAAACTTGGAGCCTTGACCAGAACCTaGTCTTGGCTTCATCCTTCTCTAGCCCCGCCCCCTGTCTCTTTC +
Preference number: 2 (lower is better)
Translates to: INTVLNIKLGALTRT*SWLHPSLAPPPVSF
Trigger: GAAAGAGACAGGGGGCGGGGCTAGAGAAGGATGAAGCCAAGACAAGGTTCTGGTCAAGGCTCCAAGTTTAATATTCAGCACTGTGTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR CAA 90 bp GGCTTTCCCTATATAAACACAGTGCTGAATATTAAACTTGGAGCCTaGACCAGAACCTTGTCTTGGCTTCATCCTTCTCTAGCCCCGCCC +
Preference number: 2 (lower is better)
Translates to: GFPYINTVLNIKLGA*TRTLSWLHPSLAPP
Trigger: GGGCGGGGCTAGAGAAGGATGAAGCCAAGACAAGGTTCTGGTCAAGGCTCCAAGTTTAATATTCAGCACTGTGTTTATATAGGGAAAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR CCA 90 bp GAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGAGCCTCAAAGCCACCATAACATTAGGGGCATaGACACACACATCCAGTGGA +
Preference number: 2 (lower is better)
Translates to: ETRKMVLCTKEQWSLKATITLGA*THTSSG
Trigger: TCCACTGGATGTGTGTGTCCATGCCCCTAATGTTAT...GGTGGCTTTGAGGCTCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR CCA 90 bp GAGACAGGGTTTTTCTATGTAGCCCTGGGTGTCCTGGAACCCTTTATATACACCTTTCTTTCTTCCCTCTaGTGTACTCAGGGTTCCAGT +
Preference number: 2 (lower is better)
Translates to: ETGFFYVALGVLEPFIYTFLSSL*CTQGSS
Trigger: ACTGGAACCCTGAGTACACCAGAGGGAAGAAAGAAA...GGTGTATATAAAGGGTTCCAGGACACCCAGGGCTACATAGAAAAACCCTGTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR TCA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGAATGGCTGGGGTTCTGTaGGAGGCACTGAGGATGGAA +
Preference number: 2 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRMAGVL*EALRME
Trigger: TTCCATCCTCAGTGCCTCTCACAGAACCCCAGCCAT...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR GCA 90 bp GAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGAGCCTCAAAGCCACCACAGGACATGGTATGTaGAGAGAAATACACACTATG +
Preference number: 2 (lower is better)
Translates to: ETRKMVLCTKEQWSLKATTGHGM*REIHTM
Trigger: CATAGTGTGTATTTCTCTGCACATACCATGTCCTGT...GGTGGCTTTGAGGCTCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR CCA 90 bp GAGACAGGGTTTTTCTATGTAGCCCTGGGTGTCCTGGAACCCTTTATATACACCTCAGCTCACAGGACATaGTATGTGCAGAGAAATACA +
Preference number: 2 (lower is better)
Translates to: ETGFFYVALGVLEPFIYTSAHRT*YVQRNT
Trigger: TGTATTTCTCTGCACATACCATGTCCTGTGAGCTGA...GGTGTATATAAAGGGTTCCAGGACACCCAGGGCTACATAGAAAAACCCTGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR TCA 90 bp GTCCTTGGACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCCTGTAAAGCACCTGTaGGAGTATGGGACTCAAAGC +
Preference number: 2 (lower is better)
Translates to: VLGLSTILLSSAGIICTSPVKHL*EYGTQS
Trigger: GCTTTGAGTCCCATACTCTCACAGGTGCTTTACAGG...ACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTCCAAGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR TCA 90 bp CTGCTCACTAACCACTCAACTGTGAGTGCAATGTCTTTGGAGTCCATTAGAGAGAAATACAACCCTACCTaGGACATGGTGTCTTTGTTT +
Preference number: 2 (lower is better)
Translates to: LLTNHSTVSAMSLESIREKYNPT*DMVSLF
Trigger: AAACAAAGACACCATGTCTCAGGTAGGGTTGTATTT...CTCTCTAATGGACTCCAAAGACATTGCACTCACAGTTGAGTGGTTAGTGAGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR GCA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACGAACCCGGAGAGATTTaGCTGCTTCTTGAGTTCTGG +
Preference number: 2 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYEPGEI*LLLEFW
Trigger: CCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTC...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR CCA 90 bp GTCCTTGGACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCAAGCTCACACTGCTTaGAAGTGTGCTATGCAAGGT +
Preference number: 2 (lower is better)
Translates to: VLGLSTILLSSAGIICTSQAHTA*KCAMQG
Trigger: ACCTTGCATAGCACACTTCCAAGCAGTGTGAGCTTG...ACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTCCAAGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR TCA 90 bp TTTAAGAGCTCATACTGGATTGCCTGGACCCCTGGAAAATGGTATAGCAGTTTTACGCACAGCCCTCCATaGAGAATGTTACTTTTACAT +
Preference number: 2 (lower is better)
Translates to: FKSSYWIAWTPGKWYSSFTHSPP*RMLLLH
Trigger: ATGTAAAAGTAACATTCTTCATGGAGGGCTGTGCGT...AAAACTGCTATACCATTTTCCAGGGGTCCAGGCAATCCAGTATGAGCTCTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR GCA 90 bp GACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCACTATACTATGCAAGGTTGTGTaGCTGGGATCTGAGTTCCTG +
Preference number: 2 (lower is better)
Translates to: DFQQSSFQVLGLYVQVTILCKVV*LGSEFL
Trigger: CAGGAACTCAGATCCCAGGCACACAACCTTGCATAG...TATAGTGACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR CCA 90 bp GGAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATCATGGTGTCTTTGTTTaGCATGTCAATAAGTTTTTC +
Preference number: 2 (lower is better)
Translates to: GDERVEMCLWVDELFGTYHGVFV*HVNKFF
Trigger: GAAAAACTTATTGACATGCCAAACAAAGACACCATG...ATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR CCA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGAAGATGTGTCTCTGGGTaGATGAGCTATTTGGTACCT +
Preference number: 2 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRRCVSG*MSYLVP
Trigger: AGGTACCAAATAGCTCATCCACCCAGAGACACATCT...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CAA 90 bp TATAATCTGTTGCTTTTAACTACTGGACCTTGTATCTTAAACAGATaGGTTGCCTTCACAGAGGATCCCTTTCAGGAAGCTCAGCTATTC +
Preference number: 2 (lower is better)
Translates to: YNLLLLTTGPCILNR*VAFTEDPFQEAQLF
Trigger: GAATAGCTGAGCTTCCTGAAAGGGATCCTCTGTGAAGGCAACCAATCTGTTTAAGATACAAGGTCCAGTAGTTAAAAGCAACAGATTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR CCA 90 bp TCTCAGCGTCCTCAGTCTCTTCGTGTACCATATAATAGTGTTAATCTTCGAGGAGTACCTAACCAATTATaGCAAATGGATGTTACCCAT +
Preference number: 2 (lower is better)
Translates to: SQRPQSLRVPYNSVNLRGVPNQL*QMDVTH
Trigger: ATGGGTAACATCCATTTGCCATAATTGGTTAGGTAC...TCCTCGAAGATTAACACTATTATATGGTACACGAAGAGACTGAGGACGCTGAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR GCA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGACATAAAATCACTTCATaGATCACAGGGTGCACAGTA +
Preference number: 2 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRHKITS*ITGCTV
Trigger: TACTGTGCACCCTGTGATGCATGAAGTGATTTTATG...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR TCA 72 bp AAGTCGGTCAATGGCAAGAGGGGGATATGGCGGCTGTaGGAGGCACTGAGGATGCAAGAGTGGAACTCGGCT +
Preference number: 3 (lower is better)
Translates to: KSVNGKRGIWRL*EALRMQEWNSA
Trigger: AGCCGAGTTCCACTCTTGCATCCTCAGTGCCTCTCACAGCCGCCATATCCCCCTCTTGCCATTGACCGACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 72 bp AGCCCTGGCCCATCAAGCTCACACTGCTTGGAAGTGTaGTATGCAAGGTTGTGTGCCTGGGATCTGAGTTCC +
Preference number: 3 (lower is better)
Translates to: SPGPSSSHCLEV*YARLCAWDLSS
Trigger: GGAACTCAGATCCCAGGCACACAACCTTGCATAGCACACTTCCAAGCAGTGTGAGCTTGATGGGCCAGGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR CCA 72 bp CTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGTTCTaGACTAAAGGCCTGCACCACCACACCTGGCTATCA +
Preference number: 3 (lower is better)
Translates to: LEPGEICLLLEF*TKGLHHHTWLS
Trigger: TGATAGCCAGGTGTGGTGGTGCAGGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 72 bp TGGCCCATCAAGCTCACACTGCTTGGAAGTGTGCTATaGAAGGTTGTGTGCCTGGGATCTGAGTTCCTGATC +
Preference number: 3 (lower is better)
Translates to: WPIKLTLLGSVL*KVVCLGSEFLI
Trigger: GATCAGGAACTCAGATCCCAGGCACACAACCTTGCATAGCACACTTCCAAGCAGTGTGAGCTTGATGGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR GCA 72 bp AATATAAGGGGTGGAACTGTCCCTGCTGAATATCAATaGATTGTGCAGAGACCCAGCCTCCTGGACCTGATG +
Preference number: 3 (lower is better)
Translates to: NIRGGTVPAEYQ*IVQRPSLLDLM
Trigger: CATCAGGTCCAGGAGGCTGGGTCTCTGCACAATGCATTGATATTCAGCAGGGACAGTTCCACCCCTTATATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 72 bp TATATACACCAGATTGGCCTCGAACCCGGAGAGATTTaGCTGCTTCTTGAGTTCTGGACTAAAGGCCTGCAC +
Preference number: 3 (lower is better)
Translates to: YIHQIGLEPGEI*LLLEFWTKGLH
Trigger: GTGCAGGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAATCTGGTGTATATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CCA 72 bp GGTTTGTGGAACTTATCTTGTGCCATAGATAATGGCTaGGGTTCTGTGAGAGGCACTGAGGATGGAAGTCGG +
Preference number: 3 (lower is better)
Translates to: GLWNLSCAIDNG*GSVRGTEDGSR
Trigger: CCGACTTCCATCCTCAGTGCCTCTCACAGAACCCCAGCCATTATCTATGGCACAAGATAAGTTCCACAAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CCA 72 bp TGTGCTATGAAGGCTGTTCCTGATTCTGAGCAATGCTaGTACCAACTGATGTCCGTCCCTGTAAAGCACCTG +
Preference number: 3 (lower is better)
Translates to: CAMKAVPDSEQC*YQLMSVPVKHL
Trigger: CAGGTGCTTTACAGGGACGGACATCAGTTGGTACCAGCATTGCTCAGAATCAGGAACAGCCTTCATAGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR TCA 72 bp TCTCTTTTCTCGGCCTTGAGCAGGGTGAGCAGACCTTaGGCGTTTGCCACATTGAACCTTAATGACTTAGGT +
Preference number: 3 (lower is better)
Translates to: SLFSALSRVSRP*AFATLNLNDLG
Trigger: ACCTAAGTCATTAAGGTTCAATGTGGCAAACGCTCAAGGTCTGCTCACCCTGCTCAAGGCCGAGAAAAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR CAA 90 bp GAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGAGCCTCAAAGCCACCATCAAGGCAAGGAAGTaGAATGAAATTGGGCCAGTT +
Preference number: 3 (lower is better)
Translates to: ETRKMVLCTKEQWSLKATIKARK*NEIGPV
Trigger: AACTGGCCCAATTTCATTCAACTTCCTTGCCTTGAT...GGTGGCTTTGAGGCTCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR CAA 90 bp CAACATAAACCAGCTGAAACAAAGGATGGGTCTGTGGGCTTTCCCTATATAAACATTTGGCACTGGGGGTaGAACCCAGGACCTTACACA +
Preference number: 3 (lower is better)
Translates to: QHKPAETKDGSVGFPYINIWHWG*NPGPYT
Trigger: TGTGTAAGGTCCTGGGTTCAACCCCCAGTGCCAAAT...GTTTATATAGGGAAAGCCCACAGACCCATCCTTTGTTTCAGCTGGTTTATGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR CAA 90 bp TCTCAGCGTCCTCAGTCTCTTCGTGTACCATATAATAGTGTTAATCTTCGAGGACAGGGTGAGCAGACCTaGAGCGTTTGCCACATTGAA +
Preference number: 3 (lower is better)
Translates to: SQRPQSLRVPYNSVNLRGQGEQT*SVCHIE
Trigger: TTCAATGTGGCAAACGCTCAAGGTCTGCTCACCCTG...TCCTCGAAGATTAACACTATTATATGGTACACGAAGAGACTGAGGACGCTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR TCA 72 bp ATCCAGCCAAATTTTAACTTATTTGGCACTGGGGGTTaGACCCAGGACCTTACACATGCTAGGCAAGCCATC +
Preference number: 3 (lower is better)
Translates to: IQPNFNLFGTGG*TQDLTHARQAI
Trigger: GATGGCTTGCCTAGCATGTGTAAGGTCCTGGGTTCAACCCCCAGTGCCAAATAAGTTAAAATTTGGCTGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR CCA 72 bp GGTTCCAGTGGAGATGAAAGAGTGGAGATGTGTCTCTaGGTGGATGAGCTATTTGGTACCTATAACCTGTGT +
Preference number: 3 (lower is better)
Translates to: GSSGDERVEMCL*VDELFGTYNLC
Trigger: ACACAGGTTATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCCACTGGAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CCA 72 bp ACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATaGTACTCTGCACAAAAGAGCAGTGGAGCCTCAAAG +
Preference number: 3 (lower is better)
Translates to: TNANHPLGKQGR*YSAQKSSGASK
Trigger: CTTTGAGGCTCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CCA 72 bp CTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTCCCTCTaGTGTACTCAGGGTTCCAGTGGAGATGAAAGAGTG +
Preference number: 3 (lower is better)
Translates to: LSLSLSFFLSSL*CTQGSSGDERV
Trigger: CACTCTTTCATCTCCACTGGAACCCTGAGTACACCAGAGGGAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CCA 72 bp AATAGATTTTTCTCTGAAAGGCAAGTAACTGAGCCCTaGCCCATCAAGCTCACACTGCTTGGAAGTGTGCTA +
Preference number: 3 (lower is better)
Translates to: NRFFSERQVTEP*PIKLTLLGSVL
Trigger: TAGCACACTTCCAAGCAGTGTGAGCTTGATGGGCCAGGGCTCAGTTACTTGCCTTTCAGAGAAAAATCTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR CCA 72 bp CTTTCAGGTAAACCCAGTTCATCCATGGCCATTGATTaGCTAGAGGTCTCACTTTATAACCCAGGCTTACAA +
Preference number: 3 (lower is better)
Translates to: LSGKPSSSMAID*LEVSLYNPGLQ
Trigger: TTGTAAGCCTGGGTTATAAAGTGAGACCTCTAGCCAATCAATGGCCATGGATGAACTGGGTTTACCTGAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR CAA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACCTGAATATCAATGCATaGTGCAGAGACCCAGCCTCC +
Preference number: 3 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYLNINA*CRDPAS
Trigger: GGAGGCTGGGTCTCTGCACAATGCATTGATATTCAG...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 72 bp GGTTGTCCTTGGACTTTCAACAATCCTCCTTTCAAGTaGTGGGATTATATGTACAAGTCACTATATCCAGCC +
Preference number: 3 (lower is better)
Translates to: GCPWTFNNPPFK*WDYMYKSLYPA
Trigger: GGCTGGATATAGTGACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTCCAAGGACAACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR CAA 90 bp GAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATATCCAATGTGCAAGTCTaGTGTGGCTGTTATAACATT +
Preference number: 3 (lower is better)
Translates to: EMKEWRCVSGWMSYLVPISNVQV*CGCYNI
Trigger: AATGTTATAACAGCCACACAAGACTTGCACATTGGA...TATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR CAA 90 bp AATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAATAATCACAGAGCATaGCTGAAATACAACCCTACC +
Preference number: 3 (lower is better)
Translates to: NANHPLGKQGRWYSAQKSNNHRA*LKYNPT
Trigger: GGTAGGGTTGTATTTCAGCAATGCTCTGTGATTATT...GCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR-3UTR CAA 90 bp GACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCACTATATCAAGCTCACACTGCTaGGAAGTGTGCTATGCAAGG +
Preference number: 3 (lower is better)
Translates to: DFQQSSFQVLGLYVQVTISSSHC*EVCYAR
Trigger: CCTTGCATAGCACACTTCCAAGCAGTGTGAGCTTGA...TATAGTGACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR TCA 72 bp ACCATGACAGTTATCAATTGCTATGAAGAAATGCATTaGGTGCATAGTCACATGTCCTTCATGGCTTTGGTC +
Preference number: 3 (lower is better)
Translates to: TMTVINCYEEMH*VHSHMSFMALV
Trigger: GACCAAAGCCATGAAGGACATGTGACTATGCACTCAATGCATTTCTTCATAGCAATTGATAACTGTCATGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR GCA 72 bp TTGGAACTCAATTTTACATGTCCTGTTTGCGAGTATTaGTTGCACAGTACTCTAAAAGGCACTGAGGAACTA +
Preference number: 3 (lower is better)
Translates to: LELNFTCPVCEY*LHSTLKGTEEL
Trigger: TAGTTCCTCAGTGCCTTTTAGAGTACTGTGCAAGCAATACTCGCAAACAGGACATGTAAAATTGAGTTCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 72 bp AATGACTTAGGTGGAGTCATCTGCCTTTGTTGCATGTaGACTTTCCTACAGGAACTTAGAATTATAAACTCC +
Preference number: 3 (lower is better)
Translates to: NDLGGVICLCCM*TFLQELRIINS
Trigger: GGAGTTTATAATTCTAAGTTCCTGTAGGAAAGTGCACATGCAACAAAGGCAGATGACTCCACCTAAGTCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR CCA 72 bp TGTCCTTGGACTTTCAACAATCCTCCTTTCAAGTGCTaGGATTATATGTACAAGTCACTATATCCAGCCAAA +
Preference number: 3 (lower is better)
Translates to: CPWTFNNPPFKC*DYMYKSLYPAK
Trigger: TTTGGCTGGATATAGTGACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTCCAAGGACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR CAA 90 bp GACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCACTATACAAATTTTAACTTATTaGGCACTGGGGGTTGAACCC +
Preference number: 3 (lower is better)
Translates to: DFQQSSFQVLGLYVQVTIQILTY*ALGVEP
Trigger: GGGTTCAACCCCCAGTGCCAAATAAGTTAAAATTTG...TATAGTGACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR TCA 72 bp AATAATCACAGAGCATTGCTGAAATACAACCCTACCTaGGACATGGTGTCTTTGTTTGGCATGTCAATAAGT +
Preference number: 3 (lower is better)
Translates to: NNHRALLKYNPT*DMVSLFGMSIS
Trigger: ACTTATTGACATGCCAAACAAAGACACCATGTCTCAGGTAGGGTTGTATTTCAGCAATGCTCTGTGATTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 72 bp TGTAAGTTCTTGGAACTCAATTTTACATGTCCTGTTTaGGAGTATTGCTTGCACAGTACTCTAAAAGGCACT +
Preference number: 3 (lower is better)
Translates to: CKFLELNFTCPV*EYCLHSTLKGT
Trigger: AGTGCCTTTTAGAGTACTGTGCAAGCAATACTCGCAAACAGGACATGTAAAATTGAGTTCCAAGAACTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 72 bp ATTTCTAGAAAATATGCACATCAAGTTGTAAAGACTTaGTCTCAGCGTCCTCAGTCTCTTCGTGTACCATAT +
Preference number: 3 (lower is better)
Translates to: ISRKYAHQVVKT*SQRPQSLRVPY
Trigger: ATATGGTACACGAAGAGACTGAGGACGCTGAGAGCAAGTCTTTACAACTTGATGTGCATATTTTCTAGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
3UTR-3UTR CAA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACAATCCAAACAACTTCTaGAAAGAATCAAGGCAAGGA +
Preference number: 3 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYNPNNF*KESRQG
Trigger: TCCTTGCCTTGATTCTTTCAAGAAGTTGTTTGGATT...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 72 bp AGGAAACAGATCTATGAAGACGTTTCCTTCATAGACTaGCATCACATTGCAGAAAAGTTAACTAGGAATTTT +
Preference number: 3 (lower is better)
Translates to: RKQIYEDVSFID*HHIAEKLTRNF
Trigger: AAAATTCCTAGTTAACTTTTCTGCAATGTGATGGCAGTCTATGAAGGAAACGTCTTCATAGATCTGTTTCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR GCA 72 bp TGTATTTATAATTCCACACAGTGGTGTAATTCCTGCTaGACACCTGGTAAAATAACATCAGCTACAAAGAAA +
Preference number: 3 (lower is better)
Translates to: CIYNSTQWCNSC*TPGKITSATKK
Trigger: TTTCTTTGTAGCTGATGTTATTTTACCAGGTGTGCAGCAGGAATTACACCACTGTGTGGAATTATAAATACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp CCCTCTGGTGTACTCAGGGTTCCAGTGGAGATGAAAGAGTGGAGATGTGTCTCTAGTGGGCTGCACGCCTaGGCTGGGAGCAAGGATGCT +
Preference number: 4 (lower is better)
Translates to: PSGVLRVPVEMKEWRCVSSGLHA*AGSKDA
Trigger: AGCATCCTTGCTCCCAGCTCAGGCGTGCAGCCCACT...AGAGACACATCTCCACTCTTTCATCTCCACTGGAACCCTGAGTACACCAGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp TTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGTTCTGGACTAAAGGCCTCTGTGTGCACTTCGTaGAGAGGTTTGGGGGCGGGG +
Preference number: 4 (lower is better)
Translates to: LASNPERFACFLSSGLKASVCTS*RGLGAG
Trigger: CCCCGCCCCCAAACCTCTGCACGAAGTGCACACAGA...GGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp GAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGAGCCTCAAAGCCACCTGGGCATTGCCAGAGTaGGCTGCACGCCTGAGCTGG +
Preference number: 4 (lower is better)
Translates to: ETRKMVLCTKEQWSLKATWALPE*AARLSW
Trigger: CCAGCTCAGGCGTGCAGCCCACTCTGGCAATGCCCA...GGTGGCTTTGAGGCTCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp GAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGAGCCTCAAAGCCACCGAGTGGCCCCAGCGGTaGGGAGGCTTCTGTGTTCTT +
Preference number: 4 (lower is better)
Translates to: ETRKMVLCTKEQWSLKATEWPQR*GGFCVL
Trigger: AAGAACACAGAAGCCTCCTCACCGCTGGGGCCACTC...GGTGGCTTTGAGGCTCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp CTTTATATACACCAGATTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGGGCTCTGTGGCTGTCTaGGAGCCAGGAGCACAGTGC +
Preference number: 4 (lower is better)
Translates to: LYIHQIGLEPGEICLLLEGSVAV*EPGAQC
Trigger: GCACTGTGCTCCTGGCTCCCAGACAGCCACAGAGCC...CTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAATCTGGTGTATATAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CAA 72 bp GCCCTGGGTGTCCTGGAACCCTTTATATACACCAGATaGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: ALGVLEPFIYTR*ASNPERFACFL
Trigger: CAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAATCTGGTGTATATAAAGGGTTCCAGGACACCCAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp AATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCTCCCAGGAATGGGGGTaGAGCCTTTGGCGCCCCCTC +
Preference number: 4 (lower is better)
Translates to: NANHPLGKQGRWYSAQKSSQEWG*SLWRPL
Trigger: GAGGGGGCGCCAAAGGCTTCACCCCCATTCCTGGGA...GCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp TTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGTTCTGGACTAAAGGCCTGTGCATCTTTCAGATaGTGGGTGACCTCAAGGGGC +
Preference number: 4 (lower is better)
Translates to: LASNPERFACFLSSGLKACASFR*WVTSRG
Trigger: GCCCCTTGAGGTCACCCAGCATCTGAAAGATGCACA...GGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp CTGGGGGTTGAACCCAGGACCTTACACATGCTAGGCAAGCCATCTACCACTGAGCCAGGTTGTTTCCTCTaGAGTCCAATGCATAGCCTG +
Preference number: 4 (lower is better)
Translates to: LGVEPRTLHMLGKPSTTEPGCFL*SPMHSL
Trigger: CAGGCTATGCATTGGACTCCAGAGGAAACAACCTGG...CTCAGTGGTAGATGGCTTGCCTAGCATGTGTAAGGTCCTGGGTTCAACCCCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CCA 90 bp AATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGACTTCGTGCAGAGGTTTaGGGGCGGGGAAGCCGGTGT +
Preference number: 4 (lower is better)
Translates to: NHPLGKQGRWYSAQKSSGLRAEV*GRGSRC
Trigger: ACACCGGCTTCCCCGCCCCCAAACCTCTGCACGAAG...TCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp TTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGTTCTGGACTAAAGGCCCACCAAGGTGGAGGTTaGAGCATACACCCTCTCTGT +
Preference number: 4 (lower is better)
Translates to: LASNPERFACFLSSGLKAHQGGG*SIHPLC
Trigger: ACAGAGAGGGTGTATGCTCCAACCTCCACCTTGGTG...GGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp CCCTCTGGTGTACTCAGGGTTCCAGTGGAGATGAAAGAGTGGAGATGTGTCTCTGGCGGTACTACCTTCTaGCTCTGCCTGGAAGATACA +
Preference number: 4 (lower is better)
Translates to: PSGVLRVPVEMKEWRCVSGGTTF*LCLEDT
Trigger: TGTATCTTCCAGGCAGAGTCAGAAGGTAGTACCGCC...AGAGACACATCTCCACTCTTTCATCTCCACTGGAACCCTGAGTACACCAGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp AATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGAATTGCCAGAGTGGGCTaGACGCCTGAGCTGGGAGCA +
Preference number: 4 (lower is better)
Translates to: NHPLGKQGRWYSAQKSSGIARVG*TPELGA
Trigger: TGCTCCCAGCTCAGGCGTGCAGCCCACTCTGGCAAT...TCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp CTGCTCACTAACCACTCAACTGTGAGTGCAATGTCTTTGGAGTCCATTAGAGAGCCAGGAGCACAGTGCTaGGTGGCACTGCTGAGCCTT +
Preference number: 4 (lower is better)
Translates to: LLTNHSTVSAMSLESIREPGAQC*VALLSL
Trigger: AAGGCTCAGCAGTGCCACCCAGCACTGTGCTCCTGG...CTCTCTAATGGACTCCAAAGACATTGCACTCACAGTTGAGTGGTTAGTGAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp GAGCCCTGGCCCATCAAGCTCACACTGCTTGGAAGTGTGCTATGCAAGGTTGTGGTCCCACCCTGGTGGTaGACATTTACAACTTACCTT +
Preference number: 4 (lower is better)
Translates to: EPWPIKLTLLGSVLCKVVVPPWW*TFTTYL
Trigger: AAGGTAAGTTGTAAATGTCCACCACCAGGGTGGGAC...CACAACCTTGCATAGCACACTTCCAAGCAGTGTGAGCTTGATGGGCCAGGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CCA 90 bp TTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGTTCTGGACTAAAGGCCCTCCTGTGTGAACACTaGCTCGTTGTCATTGATGTC +
Preference number: 4 (lower is better)
Translates to: LASNPERFACFLSSGLKALLCEH*LVVIDV
Trigger: GACATCAATGACAACGAGCCAGTGTTCACACAGGAG...GGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp AGTGGTTTGTGGAACTTATCTTGTGCCATAGATAATGGCTGGGGTTCTGTGAGAGGCCACCAGAAGCGATaGCACCACCTTGTCCTCAGG +
Preference number: 4 (lower is better)
Translates to: SGLWNLSCAIDNGWGSVRGHQKR*HHLVLR
Trigger: CCTGAGGACAAGGTGGTGCCATCGCTTCTGGTGGCC...TCTCACAGAACCCCAGCCATTATCTATGGCACAAGATAAGTTCCACAAACCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp GAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATAGCTGCACGCCTGAGCTaGGAGCAAGGATGCTCTCTC +
Preference number: 4 (lower is better)
Translates to: EMKEWRCVSGWMSYLVPIAARLS*EQGCSL
Trigger: GAGAGAGCATCCTTGCTCCCAGCTCAGGCGTGCAGC...TATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp TTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGTTCTGGACTAAAGGCCAGCTGGACTGCAGAGTaGAAGCAGGAGTTAGTATTC +
Preference number: 4 (lower is better)
Translates to: LASNPERFACFLSSGLKASWTAE*KQELVF
Trigger: GAATACTAACTCCTGCTTCCACTCTGCAGTCCAGCT...GGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CAA 72 bp GTGCTGAATATTAAACTTGGAGCCTTGACCAGAACCTaGTCTTGGCTTCATCCTTCTCTAGCCCCGCCCCCT +
Preference number: 4 (lower is better)
Translates to: VLNIKLGALTRT*SWLHPSLAPPP
Trigger: AGGGGGCGGGGCTAGAGAAGGATGAAGCCAAGACAAGGTTCTGGTCAAGGCTCCAAGTTTAATATTCAGCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR TCA 90 bp AATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGATGGTGCTATGCTTGGTaGCCCTGGTGGAAGATGTGG +
Preference number: 4 (lower is better)
Translates to: NHPLGKQGRWYSAQKSSGWCYAW*PWWKMW
Trigger: CCACATCTTCCACCAGGGTCACCAAGCATAGCACCA...TCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp AATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGAGTAGTTGTCATACTGTaGAGCCACACAGCCACCGCC +
Preference number: 4 (lower is better)
Translates to: NHPLGKQGRWYSAQKSSGVVVIL*SHTATA
Trigger: GGCGGTGGCTGTGTGGCTGCACAGTATGACAACTAC...TCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp TTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGTTCTGGACTAAAGGCCTCATTATTCCAAGGGTaGAGCATCTCTATTGTCCCA +
Preference number: 4 (lower is better)
Translates to: LASNPERFACFLSSGLKASLFQG*SISIVP
Trigger: TGGGACAATAGAGATGCTGCACCCTTGGAATAATGA...GGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp CTGCTCACTAACCACTCAACTGTGAGTGCAATGTCTTTGGAGTCCATTAGAGAGAATGGCGCACTGTTCTaGGCCCCATCCAAATCCTCT +
Preference number: 4 (lower is better)
Translates to: LLTNHSTVSAMSLESIRENGALF*APSKSS
Trigger: AGAGGATTTGGATGGGGCCCAGAACAGTGCGCCATT...CTCTCTAATGGACTCCAAAGACATTGCACTCACAGTTGAGTGGTTAGTGAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp GAGACAGGGTTTTTCTATGTAGCCCTGGGTGTCCTGGAACCCTTTATATACACCGCATCTTTCAGATGCTaGGTGACCTCAAGGGGCTTA +
Preference number: 4 (lower is better)
Translates to: ETGFFYVALGVLEPFIYTASFRC*VTSRGL
Trigger: TAAGCCCCTTGAGGTCACCCAGCATCTGAAAGATGC...GGTGTATATAAAGGGTTCCAGGACACCCAGGGCTACATAGAAAAACCCTGTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp GGAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATTGGGAATCTGGTAGCTaGACTGCAGAGTGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: GDERVEMCLWVDELFGTYWESGS*TAEWKQ
Trigger: CTGCTTCCACTCTGCAGTCCAGCTACCAGATTCCCA...ATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp CCCTCTGGTGTACTCAGGGTTCCAGTGGAGATGAAAGAGTGGAGATGTGTCTCTCCTCTAGATCTAAATTaGGCAGAGGACCTATGCTTC +
Preference number: 4 (lower is better)
Translates to: PSGVLRVPVEMKEWRCVSPLDLN*AEDLCF
Trigger: GAAGCATAGGTCCTCTGCCCAATTTAGATCTAGAGG...AGAGACACATCTCCACTCTTTCATCTCCACTGGAACCCTGAGTACACCAGAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp CAGGGATGGTTTGAGTCCTGGTTTTCCACTTCCCCAGGGCTTACAACCTTGATTCTGCATCTGTGGCGGTaGTTTTCATCACAAGTGTAT +
Preference number: 4 (lower is better)
Translates to: QGWFESWFSTSPGLTTLILHLWR*FSSQVY
Trigger: ATACACTTGTGATGAAAATCACCGCCACAGATGCAG...AATCAAGGTTGTAAGCCCTGGGGAAGTGGAAAACCAGGACTCAAACCATCCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR TCA 90 bp GAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATAGACACTCGCATACAGTaGGCTGAAGGACCTGCCTTT +
Preference number: 4 (lower is better)
Translates to: EMKEWRCVSGWMSYLVPIDTRIQ*AEGPAF
Trigger: AAAGGCAGGTCCTTCAGCTCACTGTATGCGAGTGTC...TATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp AATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCCAGTCTTTGGCCATGTaGAGGTCGTCTTCCCCATTG +
Preference number: 4 (lower is better)
Translates to: NANHPLGKQGRWYSAQKSQSLAM*RSSSPL
Trigger: CAATGGGGAAGACGACCTTCACATGGCCAAAGACTG...GCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp CTGCTCACTAACCACTCAACTGTGAGTGCAATGTCTTTGGAGTCCATTAGAGAGTTCTTTCTGTCACGGTaGCATTCTGTCCTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: LLTNHSTVSAMSLESIREFFLSR*HSVLLL
Trigger: CAGCAGGAGGACAGAATGTCACCGTGACAGAAAGAA...CTCTCTAATGGACTCCAAAGACATTGCACTCACAGTTGAGTGGTTAGTGAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp AATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGACCGTCAAGGAATAGCTaGTGTGTTCCTCTCTGTCCA +
Preference number: 4 (lower is better)
Translates to: NHPLGKQGRWYSAQKSSGPSRNS*CVPLCP
Trigger: TGGACAGAGAGGAACACAGCAGCTATTCCTTGACGG...TCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp CTGCTCACTAACCACTCAACTGTGAGTGCAATGTCTTTGGAGTCCATTAGAGAGTATTTTCCACTTCTGTaGCGTTCCAGGAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: LLTNHSTVSAMSLESIREYFPLL*RSRRLV
Trigger: GACCAGCCTCCTGGAACGGCACAGAAGTGGAAAATA...CTCTCTAATGGACTCCAAAGACATTGCACTCACAGTTGAGTGGTTAGTGAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp GAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATAAGCTGGGAGCAAGGATaGTCTCTCTTTCCCTCACCA +
Preference number: 4 (lower is better)
Translates to: EMKEWRCVSGWMSYLVPISWEQG*SLFPSP
Trigger: TGGTGAGGGAAAGAGAGAGCATCCTTGCTCCCAGCT...TATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp CAGGGATGGTTTGAGTCCTGGTTTTCCACTTCCCCAGGGCTTACAACCTTGATTACTTCTACATTGACCTaGTTTTCTTCCACTGTCCCC +
Preference number: 4 (lower is better)
Translates to: QGWFESWFSTSPGLTTLITSTLT*FSSTVP
Trigger: GGGGACAGTGGAAGAAAACCAGGTCAATGTAGAAGT...AATCAAGGTTGTAAGCCCTGGGGAAGTGGAAAACCAGGACTCAAACCATCCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CCA 90 bp GGAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATCGAGAAGGCAGTCTTTaGCCATGTGAAGGTCGTCTT +
Preference number: 4 (lower is better)
Translates to: GDERVEMCLWVDELFGTYREGSL*PCEGRL
Trigger: AAGACGACCTTCACATGGCCAAAGACTGCCTTCTCG...ATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp GGAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATCCTTCTGACTCTGCCTaGAAGATACAGAGCTCTCAG +
Preference number: 4 (lower is better)
Translates to: GDERVEMCLWVDELFGTYPSDSA*KIQSSQ
Trigger: CTGAGAGCTCTGTATCTTCCAGGCAGAGTCAGAAGG...ATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp GGAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATGCACTGCTGAGCCTTTaGCATAGGAAGTTTCCGTCA +
Preference number: 4 (lower is better)
Translates to: GDERVEMCLWVDELFGTYALLSL*HRKFPS
Trigger: TGACGGAAACTTCCTATGCCAAAGGCTCAGCAGTGC...ATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACCACGATCAGGCTCTGTaGCTGTCTGGGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYHDQAL*LSGSQE
Trigger: CTCCTGGCTCCCAGACAGCCACAGAGCCTGATCGTG...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp GAGACAGGGTTTTTCTATGTAGCCCTGGGTGTCCTGGAACCCTTTATATACACCCTGCATCTGTGGCGGTaGTTTTCATCACAAGTGTAT +
Preference number: 4 (lower is better)
Translates to: ETGFFYVALGVLEPFIYTLHLWR*FSSQVY
Trigger: ATACACTTGTGATGAAAATCACCGCCACAGATGCAG...GGTGTATATAAAGGGTTCCAGGACACCCAGGGCTACATAGAAAAACCCTGTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp CTGCTCACTAACCACTCAACTGTGAGTGCAATGTCTTTGGAGTCCATTAGAGAGGTGACTTTCTCTGTGTaGACTTCGTGCAGAGGTTTG +
Preference number: 4 (lower is better)
Translates to: LLTNHSTVSAMSLESIREVTFSV*TSCRGL
Trigger: CAAACCTCTGCACGAAGTGCACACAGAGAAAGTCAC...CTCTCTAATGGACTCCAAAGACATTGCACTCACAGTTGAGTGGTTAGTGAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGAATTCTGTCCTCCTGCTaGCACGCTGGGCATTGCCAG +
Preference number: 4 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRILSSC*HAGHCQ
Trigger: CTGGCAATGCCCAGCGTGGCAGCAGGAGGACAGAAT...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp GAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATAACGCTGCTCTTGAAATaGATGCCTTCAACCACGTTC +
Preference number: 4 (lower is better)
Translates to: EMKEWRCVSGWMSYLVPITLLLK*MPSTTF
Trigger: GAACGTGGTTGAAGGCATTCATTTCAAGAGCAGCGT...TATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp CAGGGATGGTTTGAGTCCTGGTTTTCCACTTCCCCAGGGCTTACAACCTTGATTATTTACAACTTACCTTaGCAAGGGTCACAATCCCTT +
Preference number: 4 (lower is better)
Translates to: QGWFESWFSTSPGLTTLIIYNLP*QGSQSL
Trigger: AAGGGATTGTGACCCTTGTCAAGGTAAGTTGTAAAT...AATCAAGGTTGTAAGCCCTGGGGAAGTGGAAAACCAGGACTCAAACCATCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR GCA 90 bp CAGGGATGGTTTGAGTCCTGGTTTTCCACTTCCCCAGGGCTTACAACCTTGATTGAACATATGACTATTTaGAGGCTCCTGAGAGACAAT +
Preference number: 4 (lower is better)
Translates to: QGWFESWFSTSPGLTTLIEHMTI*RLLRDN
Trigger: ATTGTCTCTCAGGAGCCTGCAAATAGTCATATGTTC...AATCAAGGTTGTAAGCCCTGGGGAAGTGGAAAACCAGGACTCAAACCATCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR GCA 90 bp GAGACAGGGTTTTTCTATGTAGCCCTGGGTGTCCTGGAACCCTTTATATACACCTATGGCCACAACCTTTaGAGTGTAGGTACCATTTTG +
Preference number: 4 (lower is better)
Translates to: ETGFFYVALGVLEPFIYTYGHNL*SVGTIL
Trigger: CAAAATGGTACCTACACTGCAAAGGTTGTGGCCATA...GGTGTATATAAAGGGTTCCAGGACACCCAGGGCTACATAGAAAAACCCTGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp CTGCTCACTAACCACTCAACTGTGAGTGCAATGTCTTTGGAGTCCATTAGAGAGCCCATCCAAATCCTCTaGAGTGACATTCACATATGG +
Preference number: 4 (lower is better)
Translates to: LLTNHSTVSAMSLESIREPIQIL*SDIHIW
Trigger: CCATATGTGAATGTCACTGCAGAGGATTTGGATGGG...CTCTCTAATGGACTCCAAAGACATTGCACTCACAGTTGAGTGGTTAGTGAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp CTTTATATACACCAGATTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGCTGGTACTTTCCTGGTaGGTTATTTTCCACTTCTGT +
Preference number: 4 (lower is better)
Translates to: LYIHQIGLEPGEICLLLELVLSW*VIFHFC
Trigger: ACAGAAGTGGAAAATAACGCACCAGGAAAGTACCAG...CTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAATCTGGTGTATATAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp CTTTATATACACCAGATTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGCACCATTACATACTGTaGATCTTTCAGATGCTGGGT +
Preference number: 4 (lower is better)
Translates to: LYIHQIGLEPGEICLLLEHHYIL*IFQMLG
Trigger: ACCCAGCATCTGAAAGATGCACAGTATGTAATGGTG...CTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAATCTGGTGTATATAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp CTGCTCACTAACCACTCAACTGTGAGTGCAATGTCTTTGGAGTCCATTAGAGAGCCAAATCCTCTGCAGTaGCATTCACATATGGTTCAT +
Preference number: 4 (lower is better)
Translates to: LLTNHSTVSAMSLESIREPNPLQ*HSHMVH
Trigger: ATGAACCATATGTGAATGTCACTGCAGAGGATTTGG...CTCTCTAATGGACTCCAAAGACATTGCACTCACAGTTGAGTGGTTAGTGAGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGACGGAAGCTGAGCTGCTaGCTTTCATCATGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRRKLSC*LSSCLP
Trigger: AGGAAGGCATGATGAAAGGCAGCAGCTCAGCTTCCG...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp GGAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATTGTCAGCAGAAAATATaGTGTTTCTTCCCGGTCAAG +
Preference number: 4 (lower is better)
Translates to: GDERVEMCLWVDELFGTYCQQKI*CFFPVK
Trigger: CTTGACCGGGAAGAAACACCATATTTTCTGCTGACA...ATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp GAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATACACTCAATTCCTCAATaGACCCAACAAAGACCTCCT +
Preference number: 4 (lower is better)
Translates to: EMKEWRCVSGWMSYLVPIHSIPQ*TQQRPP
Trigger: AGGAGGTCTTTGTTGGGTCCATTGAGGAATTGAGTG...TATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp GTCCTTGGACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTTTGAGCTTGCTGGACTaGCTTGTCTGTTATCTGCCC +
Preference number: 4 (lower is better)
Translates to: VLGLSTILLSSAGIICTSLSLLD*LVCYLP
Trigger: GGGCAGATAACAGACAAGCCAGTCCAGCAAGCTCAA...ACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTCCAAGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CCA 90 bp GGAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATCTCAGAATGGACTTGTaGAAAGCTGCTTTGTTAGTG +
Preference number: 4 (lower is better)
Translates to: GDERVEMCLWVDELFGTYLRMDL*KAALLV
Trigger: CACTAACAAAGCAGCTTTCCACAAGTCCATTCTGAG...ATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp CTGCTCACTAACCACTCAACTGTGAGTGCAATGTCTTTGGAGTCCATTAGAGAGGTTACTTTAGCTGCTTaGCCAGTGTCTTCATCAAAA +
Preference number: 4 (lower is better)
Translates to: LLTNHSTVSAMSLESIREVTLAA*PVSSSK
Trigger: TTTTGATGAAGACACTGGTCAAGCAGCTAAAGTAAC...CTCTCTAATGGACTCCAAAGACATTGCACTCACAGTTGAGTGGTTAGTGAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp GAGACAGGGTTTTTCTATGTAGCCCTGGGTGTCCTGGAACCCTTTATATACACCTATCCCTTTTTCTTCTaGAAGGTCAGAGTGTATCTT +
Preference number: 4 (lower is better)
Translates to: ETGFFYVALGVLEPFIYTYPFFF*KVRVYL
Trigger: AAGATACACTCTGACCTTGCAGAAGAAAAAGGGATA...GGTGTATATAAAGGGTTCCAGGACACCCAGGGCTACATAGAAAAACCCTGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp GGAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATGAACATATGACTATTTaGAGGCTCCTGAGAGACAAT +
Preference number: 4 (lower is better)
Translates to: GDERVEMCLWVDELFGTYEHMTI*RLLRDN
Trigger: ATTGTCTCTCAGGAGCCTGCAAATAGTCATATGTTC...ATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACTTGAGCTTGCTGGACTaGCTTGTCTGTTATCTGCCC +
Preference number: 4 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYLSLLD*LVCYLP
Trigger: GGGCAGATAACAGACAAGCCAGTCCAGCAAGCTCAA...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp AGTGGTTTGTGGAACTTATCTTGTGCCATAGATAATGGCTGGGGTTCTGTGAGAGATGTTCTTTGGATATaGCCACAACCTTTGCAGTGT +
Preference number: 4 (lower is better)
Translates to: SGLWNLSCAIDNGWGSVRDVLWI*PQPLQC
Trigger: ACACTGCAAAGGTTGTGGCCATATCCAAAGAACATC...TCTCACAGAACCCCAGCCATTATCTATGGCACAAGATAAGTTCCACAAACCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp ATGTGCAGAGAAATACACACTATGTATTCTTATCCTGACAGTGTTCTAAAGTCTGCCGTTCCAGGAGGCTaGTCAATGATGGAGAAGCTG +
Preference number: 4 (lower is better)
Translates to: MCREIHTMYSYPDSVLKSAVPGG*SMMEKL
Trigger: CAGCTTCTCCATCATTGACCAGCCTCCTGGAACGGC...AGACTTTAGAACACTGTCAGGATAAGAATACATAGTGTGTATTTCTCTGCACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp ATGTGCAGAGAAATACACACTATGTATTCTTATCCTGACAGTGTTCTAAAGTCTGCTGATCCACCAAGGTaGAGGTTGGAGCATACACCC +
Preference number: 4 (lower is better)
Translates to: MCREIHTMYSYPDSVLKSADPPR*RLEHTP
Trigger: GGGTGTATGCTCCAACCTCCACCTTGGTGGATCAGC...AGACTTTAGAACACTGTCAGGATAAGAATACATAGTGTGTATTTCTCTGCACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp ATGTGCAGAGAAATACACACTATGTATTCTTATCCTGACAGTGTTCTAAAGTCTCCTGGCTGTCGGAAATaGGGAAGGGAATCTCACTTC +
Preference number: 4 (lower is better)
Translates to: MCREIHTMYSYPDSVLKSPGCRK*GRESHF
Trigger: GAAGTGAGATTCCCTTCCTCATTTCCGACAGCCAGG...AGACTTTAGAACACTGTCAGGATAAGAATACATAGTGTGTATTTCTCTGCACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACCCCGTTACCATCTCTTaGTTCCACCGTCAAGGAATA +
Preference number: 4 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYPVTIS*FHRQGI
Trigger: TATTCCTTGACGGTGGAAGCAAGAGATGGTAACGGG...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp TCTCAGCGTCCTCAGTCTCTTCGTGTACCATATAATAGTGTTAATCTTCGAGGATGTCAGCAGAAAATATaGTGTTTCTTCCCGGTCAAG +
Preference number: 4 (lower is better)
Translates to: SQRPQSLRVPYNSVNLRGCQQKI*CFFPVK
Trigger: CTTGACCGGGAAGAAACACCATATTTTCTGCTGACA...TCCTCGAAGATTAACACTATTATATGGTACACGAAGAGACTGAGGACGCTGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CCA 90 bp GTCCTTGGACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCACTCAATTCCTCAATaGACCCAACAAAGACCTCCT +
Preference number: 4 (lower is better)
Translates to: VLGLSTILLSSAGIICTSHSIPQ*TQQRPP
Trigger: AGGAGGTCTTTGTTGGGTCCATTGAGGAATTGAGTG...ACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTCCAAGGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CCA 90 bp AATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGACATTCACATATaGTTCATCCTCACAGACACT +
Preference number: 4 (lower is better)
Translates to: NANHPLGKQGRWYSAQKSSDIHI*FILTDT
Trigger: AGTGTCTGTGAGGATGAACCATATGTGAATGTCACT...GCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CAA 72 bp GAACTCAATTTTACATGTCCTGTTTGCGAGTATTGCTaGCACAGTACTCTAAAAGGCACTGAGGAACTAGCA +
Preference number: 4 (lower is better)
Translates to: ELNFTCPVCEYC*HSTLKGTEELA
Trigger: TGCTAGTTCCTCAGTGCCTTTTAGAGTACTGTGCAAGCAATACTCGCAAACAGGACATGTAAAATTGAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp AATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCCAGGTATATTGTCATTaGCATCCAATATACGGATCT +
Preference number: 4 (lower is better)
Translates to: NANHPLGKQGRWYSAQKSQVYCH*HPIYGS
Trigger: AGATCCGTATATTGGATGTCAATGACAATATACCTG...GCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACAGACTACGCTGCTCTTaGAATGAATGCCTTCAACCA +
Preference number: 4 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYRLRCS*NECLQP
Trigger: TGGTTGAAGGCATTCATTTCAAGAGCAGCGTAGTCT...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp TTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCACTATATCCACCCGTTACCATCTCTTaGTTCCACCGTCAAGGAATA +
Preference number: 4 (lower is better)
Translates to: FNNPPFKCWDYMYKSLYPPVTIS*FHRQGI
Trigger: TATTCCTTGACGGTGGAAGCAAGAGATGGTAACGGG...TGGATATAGTGACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR GCA 90 bp ATGTGCAGAGAAATACACACTATGTATTCTTATCCTGACAGTGTTCTAAAGTCTCTTGTCCTCAGGAGGTaGCCCTTCATTATTCCAAGG +
Preference number: 4 (lower is better)
Translates to: MCREIHTMYSYPDSVLKSLVLRR*PFIIPR
Trigger: CCTTGGAATAATGAAGGGGCACCTCCTGAGGACAAG...AGACTTTAGAACACTGTCAGGATAAGAATACATAGTGTGTATTTCTCTGCACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp ATGTGCAGAGAAATACACACTATGTATTCTTATCCTGACAGTGTTCTAAAGTCTCCAGGTTGTTTCCTCTaGAGTCCAATGCATAGCCTG +
Preference number: 4 (lower is better)
Translates to: MCREIHTMYSYPDSVLKSPGCFL*SPMHSL
Trigger: CAGGCTATGCATTGGACTCCAGAGGAAACAACCTGG...AGACTTTAGAACACTGTCAGGATAAGAATACATAGTGTGTATTTCTCTGCACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGAACTTCTACATTGACCTaGTTTTCTTCCACTGTCCCC +
Preference number: 4 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRTSTLT*FSSTVP
Trigger: GGGGACAGTGGAAGAAAACCAGGTCAATGTAGAAGT...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR TCA 90 bp TCTCAGCGTCCTCAGTCTCTTCGTGTACCATATAATAGTGTTAATCTTCGAGGACAGGTATATTGTCATTaGCATCCAATATACGGATCT +
Preference number: 4 (lower is better)
Translates to: SQRPQSLRVPYNSVNLRGQVYCH*HPIYGS
Trigger: AGATCCGTATATTGGATGTCAATGACAATATACCTG...TCCTCGAAGATTAACACTATTATATGGTACACGAAGAGACTGAGGACGCTGAGA
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR GCA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGAGGACTTGTGGAAAGCTaGTTTGTTAGTGACAATGAT +
Preference number: 4 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRGLVES*FVSDND
Trigger: ATCATTGTCACTAACAAAGCAGCTTTCCACAAGTCC...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACGGACTTTTTCTTCATTaGCATAATGCTGATCCACCA +
Preference number: 4 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYGLFLH*HNADPP
Trigger: TGGTGGATCAGCATTATGCCAATGAAGAAAAAGTCC...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR GCA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACATATGTTACTTTAGCTaGTTGACCAGTGTCTTCATC +
Preference number: 4 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYICYFS*LTSVFI
Trigger: GATGAAGACACTGGTCAAGCAGCTAAAGTAACATAT...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CCA 90 bp ATGTGCAGAGAAATACACACTATGTATTCTTATCCTGACAGTGTTCTAAAGTCTACACTGGTACTTTCCTaGTGCGTTATTTTCCACTTC +
Preference number: 4 (lower is better)
Translates to: MCREIHTMYSYPDSVLKSTLVLS*CVIFHF
Trigger: GAAGTGGAAAATAACGCACCAGGAAAGTACCAGTGT...AGACTTTAGAACACTGTCAGGATAAGAATACATAGTGTGTATTTCTCTGCACAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
3UTR CAA 72 bp TTCGTGTACCATATAATAGTGTTAATCTTCGAGGACTaGTACCTAACCAATTATGGCAAATGGATGTTACCC +
Preference number: 4 (lower is better)
Translates to: FVYHIIVLIFED*YLTNYGKWMLP
Trigger: GGGTAACATCCATTTGCCATAATTGGTTAGGTACAAGTCCTCGAAGATTAACACTATTATATGGTACACGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR GCA 90 bp GACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCACTATATATCCCTTTTTCTTCTaGAAGGTCAGAGTGTATCTT +
Preference number: 4 (lower is better)
Translates to: DFQQSSFQVLGLYVQVTIYPFFF*KVRVYL
Trigger: AAGATACACTCTGACCTTGCAGAAGAAAAAGGGATA...TATAGTGACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR GCA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACCAGTTGTCAGTGTCTTaGACTTTTACATATGTTACT +
Preference number: 4 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYQLSVS*TFTYVT
Trigger: AGTAACATATGTAAAAGTGCAAGACACTGACAACTG...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp GCAGCCACACAGCCACCGCCCTTCAGACACTCGCATACAGTGAGCTaGAGGACCTGCCTTTCGGGGCAGCTGAAGCCCTGGCTGTCGGAA +
Preference number: 5 (lower is better)
Translates to: AATQPPPFRHSHTVS*RTCLSGQLKPWLSE
Trigger: TTCCGACAGCCAGGGCTTCAGCTGCCCCGAAAGGCAGGTCCTTCAGCTCACTGTATGCGAGTGTCTGAAGGGCGGTGGCTGTGTGGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp GAGAGCGATGGCGGCAGGGCCCAACCCGACGTAGTTGTCATACTGTaGAGCCACACAGCCACCGCCCTTCAGACACTCGCATACAGTGAG +
Preference number: 5 (lower is better)
Translates to: ESDGGRAQPDVVVIL*SHTATALQTLAYSE
Trigger: CTCACTGTATGCGAGTGTCTGAAGGGCGGTGGCTGTGTGGCTGCACAGTATGACAACTACGTCGGGTTGGGCCCTGCCGCCATCGCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp ACATTCTGTCCTCCTGCTGCCACGCTGGGCATTGCCAGAGTGGGCTaGACGCCTGAGCTGGGAGCAAGGATGCTCTCTCTTTCCCTCACC +
Preference number: 5 (lower is better)
Translates to: TFCPPAATLGIARVG*TPELGARMLSLSLT
Trigger: GGTGAGGGAAAGAGAGAGCATCCTTGCTCCCAGCTCAGGCGTGCAGCCCACTCTGGCAATGCCCAGCGTGGCAGCAGGAGGACAGAATGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp ACAGCAAGAGCGGCACCAGGAGCAGGAGCAGGAGTGCTAGAATCATaGGAGCGATGGCGGCAGGGCCCAACCCGACGTAGTTGTCATACT +
Preference number: 5 (lower is better)
Translates to: TARAAPGAGAGVLES*ERWRQGPTRRSCHT
Trigger: AGTATGACAACTACGTCGGGTTGGGCCCTGCCGCCATCGCTCTCATGATTCTAGCACTCCTGCTCCTGCTCCTGGTGCCGCTCTTGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp TCCTCCTGCTGCCACGCTGGGCATTGCCAGAGTGGGCTGCACGCCTaGGCTGGGAGCAAGGATGCTCTCTCTTTCCCTCACCATTACATA +
Preference number: 5 (lower is better)
Translates to: SSCCHAGHCQSGLHA*AGSKDALSFPHHYI
Trigger: TATGTAATGGTGAGGGAAAGAGAGAGCATCCTTGCTCCCAGCTCAGGCGTGCAGCCCACTCTGGCAATGCCCAGCGTGGCAGCAGGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp CTGTCACGATCAGGCTCTGTGGCTGTCTGGGAGCCAGGAGCACAGTaGTGGGTGGCACTGCTGAGCCTTTGGCATAGGAAGTTTCCGTCA +
Preference number: 5 (lower is better)
Translates to: LSRSGSVAVWEPGAQ*WVALLSLWHRKFPS
Trigger: TGACGGAAACTTCCTATGCCAAAGGCTCAGCAGTGCCACCCAGCACTGTGCTCCTGGCTCCCAGACAGCCACAGAGCCTGATCGTGACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 90 bp CTGCTGCCACGCTGGGCATTGCCAGAGTGGGCTGCACGCCTGAGCTaGGAGCAAGGATGCTCTCTCTTTCCCTCACCATTACATACTGTG +
Preference number: 5 (lower is better)
Translates to: LLPRWALPEWAARLS*EQGCSLFPSPLHTV
Trigger: CACAGTATGTAATGGTGAGGGAAAGAGAGAGCATCCTTGCTCCCAGCTCAGGCGTGCAGCCCACTCTGGCAATGCCCAGCGTGGCAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 90 bp CCGCGTTTCCGCTCGCTCTGCTGCAGCAGCACACTGGTACTTTCCTaGTGCGTTATTTTCCACTTCTGTGCCGTTCCAGGAGGCTGGTCA +
Preference number: 5 (lower is better)
Translates to: PRFRSLCCSSTLVLS*CVIFHFCAVPGGWS
Trigger: TGACCAGCCTCCTGGAACGGCACAGAAGTGGAAAATAACGCACCAGGAAAGTACCAGTGTGCTGCTGCAGCAGAGCGAGCGGAAACGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 90 bp TCATGTCTCTGGAAGACCCCGTGGCTCTTGTCCTTACGGCTTCGTTaGCAGCGATGGTTCCTGCTGTCCTTACATGGTGAGTGGCCCCAG +
Preference number: 5 (lower is better)
Translates to: SCLWKTPWLLSLRLR*QRWFLLSLHGEWPQ
Trigger: CTGGGGCCACTCACCATGTAAGGACAGCAGGAACCATCGCTGCCAACGAAGCCGTAAGGACAAGAGCCACGGGGTCTTCCAGAGACATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp CAGCGATGGTTCCTGCTGTCCTTACATGGTGAGTGGCCCCAGCGGTaGGGAGGCTTCTGTGTTCTTCCCATCTTCCGTCAACCTCAGACA +
Preference number: 5 (lower is better)
Translates to: QRWFLLSLHGEWPQR*GGFCVLPIFRQPQT
Trigger: TGTCTGAGGTTGACGGAAGATGGGAAGAACACAGAAGCCTCCTCACCGCTGGGGCCACTCACCATGTAAGGACAGCAGGAACCATCGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp CTTACGGCTTCGTTGGCAGCGATGGTTCCTGCTGTCCTTACATGGTaGGTGGCCCCAGCGGTGAGGAGGCTTCTGTGTTCTTCCCATCTT +
Preference number: 5 (lower is better)
Translates to: LTASLAAMVPAVLTW*VAPAVRRLLCSSHL
Trigger: AAGATGGGAAGAACACAGAAGCCTCCTCACCGCTGGGGCCACTCACCATGTAAGGACAGCAGGAACCATCGCTGCCAACGAAGCCGTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp GGCACCACCTTGTCCTCAGGAGGTGCCCCTTCATTATTCCAAGGGTaGAGCATCTCTATTGTCCCAGGAATGGGGGTGAAGCCTTTGGCG +
Preference number: 5 (lower is better)
Translates to: GTTLSSGGAPSLFQG*SISIVPGMGVKPLA
Trigger: CGCCAAAGGCTTCACCCCCATTCCTGGGACAATAGAGATGCTGCACCCTTGGAATAATGAAGGGGCACCTCCTGAGGACAAGGTGGTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp CTCTCAGTGACGATTTCCTGTGTGACTTTCTCTGTGTGCACTTCGTaGAGAGGTTTGGGGGCGGGGAAGCCGGTGTTAGAGGAGTACGCG +
Preference number: 5 (lower is better)
Translates to: LSVTISCVTFSVCTS*RGLGAGKPVLEEYA
Trigger: CGCGTACTCCTCTAACACCGGCTTCCCCGCCCCCAAACCTCTGCACGAAGTGCACACAGAGAAAGTCACACAGGAAATCGTCACTGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp TCCGTCAACCTCAGACAGCTCATGCTGCCCTTTGGTAACGGAAGCTaGGCTGCTGCCTTTCATCATGCCTTCCTTGAGCATCGCACCTCC +
Preference number: 5 (lower is better)
Translates to: SVNLRQLMLPFGNGS*AAAFHHAFLEHRTS
Trigger: GGAGGTGCGATGCTCAAGGAAGGCATGATGAAAGGCAGCAGCTCAGCTTCCGTTACCAAAGGGCAGCATGAGCTGTCTGAGGTTGACGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp CGTTTCCGCTCGCTCTGCTGCAGCAGCACACTGGTACTTTCCTGGTaGGTTATTTTCCACTTCTGTGCCGTTCCAGGAGGCTGGTCAATG +
Preference number: 5 (lower is better)
Translates to: RFRSLCCSSTLVLSW*VIFHFCAVPGGWSM
Trigger: CATTGACCAGCCTCCTGGAACGGCACAGAAGTGGAAAATAACGCACCAGGAAAGTACCAGTGTGCTGCTGCAGCAGAGCGAGCGGAAACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp ATGATCGGCCACCAGAAGCGATGGCACCACCTTGTCCTCAGGAGGTaGCCCTTCATTATTCCAAGGGTGCAGCATCTCTATTGTCCCAGG +
Preference number: 5 (lower is better)
Translates to: MIGHQKRWHHLVLRR*PFIIPRVQHLYCPR
Trigger: CCTGGGACAATAGAGATGCTGCACCCTTGGAATAATGAAGGGGCACCTCCTGAGGACAAGGTGGTGCCATCGCTTCTGGTGGCCGATCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 90 bp TCTCACTTCTCCCGCGTTTCCGCTCGCTCTGCTGCAGCAGCACACTaGTACTTTCCTGGTGCGTTATTTTCCACTTCTGTGCCGTTCCAG +
Preference number: 5 (lower is better)
Translates to: SHFSRVSARSAAAAH*YFPGALFSTSVPFQ
Trigger: CTGGAACGGCACAGAAGTGGAAAATAACGCACCAGGAAAGTACCAGTGTGCTGCTGCAGCAGAGCGAGCGGAAACGCGGGAGAAGTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 90 bp GGAGGGAGGCCGTGTCTTCCTGAGAGTAAACGAGAAGGCAGTCTTTaGCCATGTGAAGGTCGTCTTCCCCATTGTAGGAGGCCGCTTTCT +
Preference number: 5 (lower is better)
Translates to: GGRPCLPESKREGSL*PCEGRLPHCRRPLS
Trigger: AGAAAGCGGCCTCCTACAATGGGGAAGACGACCTTCACATGGCCAAAGACTGCCTTCTCGTTTACTCTCAGGAAGACACGGCCTCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp GATACAGAGCTCTCAGTGACGATTTCCTGTGTGACTTTCTCTGTGTaGACTTCGTGCAGAGGTTTGGGGGCGGGGAAGCCGGTGTTAGAG +
Preference number: 5 (lower is better)
Translates to: DTELSVTISCVTFSV*TSCRGLGAGKPVLE
Trigger: CTCTAACACCGGCTTCCCCGCCCCCAAACCTCTGCACGAAGTGCACACAGAGAAAGTCACACAGGAAATCGTCACTGAGAGCTCTGTATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 90 bp CTTCTGTGCCGTTCCAGGAGGCTGGTCAATGATGGAGAAGCTGAATaGCGCACTGTTCTGGGCCCCATCCAAATCCTCTGCAGTGACATT +
Preference number: 5 (lower is better)
Translates to: LLCRSRRLVNDGEAE*RTVLGPIQILCSDI
Trigger: AATGTCACTGCAGAGGATTTGGATGGGGCCCAGAACAGTGCGCCATTCAGCTTCTCCATCATTGACCAGCCTCCTGGAACGGCACAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp CATTATTCCAAGGGTGCAGCATCTCTATTGTCCCAGGAATGGGGGTaGAGCCTTTGGCGCCCCCTCCACAGTGGCATATCAACAGCAAGA +
Preference number: 5 (lower is better)
Translates to: HYSKGAASLLSQEWG*SLWRPLHSGISTAR
Trigger: TCTTGCTGTTGATATGCCACTGTGGAGGGGGCGCCAAAGGCTTCACCCCCATTCCTGGGACAATAGAGATGCTGCACCCTTGGAATAATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp CTGTGGCTGTCTGGGAGCCAGGAGCACAGTGCTGGGTGGCACTGCTaGGCCTTTGGCATAGGAAGTTTCCGTCACTATAATATTACCAGA +
Preference number: 5 (lower is better)
Translates to: LWLSGSQEHSAGWHC*AFGIGSFRHYNITR
Trigger: TCTGGTAATATTATAGTGACGGAAACTTCCTATGCCAAAGGCTCAGCAGTGCCACCCAGCACTGTGCTCCTGGCTCCCAGACAGCCACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp ATGAGGAAGGGAATCTCACTTCTCCCGCGTTTCCGCTCGCTCTGCTaGAGCAGCACACTGGTACTTTCCTGGTGCGTTATTTTCCACTTC +
Preference number: 5 (lower is better)
Translates to: MRKGISLLPRFRSLC*SSTLVLSWCVIFHF
Trigger: GAAGTGGAAAATAACGCACCAGGAAAGTACCAGTGTGCTGCTGCAGCAGAGCGAGCGGAAACGCGGGAGAAGTGAGATTCCCTTCCTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp GAAATGAGGAAGGGAATCTCACTTCTCCCGCGTTTCCGCTCGCTCTaGTGCAGCAGCACACTGGTACTTTCCTGGTGCGTTATTTTCCAC +
Preference number: 5 (lower is better)
Translates to: EMRKGISLLPRFRSL*CSSTLVLSWCVIFH
Trigger: GTGGAAAATAACGCACCAGGAAAGTACCAGTGTGCTGCTGCAGCAGAGCGAGCGGAAACGCGGGAGAAGTGAGATTCCCTTCCTCATTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp GCTGGGAGCAAGGATGCTCTCTCTTTCCCTCACCATTACATACTGTaGATCTTTCAGATGCTGGGTGACCTCAAGGGGCTTAGGGATGCC +
Preference number: 5 (lower is better)
Translates to: AGSKDALSFPHHYIL*IFQMLGDLKGLRDA
Trigger: GGCATCCCTAAGCCCCTTGAGGTCACCCAGCATCTGAAAGATGCACAGTATGTAATGGTGAGGGAAAGAGAGAGCATCCTTGCTCCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp TGGGCATTGCCAGAGTGGGCTGCACGCCTGAGCTGGGAGCAAGGATaGTCTCTCTTTCCCTCACCATTACATACTGTGCATCTTTCAGAT +
Preference number: 5 (lower is better)
Translates to: WALPEWAARLSWEQG*SLFPSPLHTVHLSD
Trigger: ATCTGAAAGATGCACAGTATGTAATGGTGAGGGAAAGAGAGAGCATCCTTGCTCCCAGCTCAGGCGTGCAGCCCACTCTGGCAATGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp TTAGGGAACGGTTTGCCTTCATTTCTTGGGCTGAAGACCTCTAAGTaGAGTCCGTTTCCAAAGTCCAAGCAGACCACCGCCAGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: LGNGLPSFLGLKTSK*SPFPKSKQTTASSC
Trigger: GCAGCTGCTGGCGGTGGTCTGCTTGGACTTTGGAAACGGACTTCACTTAGAGGTCTTCAGCCCAAGAAATGAAGGCAAACCGTTCCCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS GCA 90 bp GGAGAAGCTGAATGGCGCACTGTTCTGGGCCCCATCCAAATCCTCTaGAGTGACATTCACATATGGTTCATCCTCACAGACACTCCGTAC +
Preference number: 5 (lower is better)
Translates to: GEAEWRTVLGPIQIL*SDIHIWFILTDTPY
Trigger: GTACGGAGTGTCTGTGAGGATGAACCATATGTGAATGTCACTGCAGAGGATTTGGATGGGGCCCAGAACAGTGCGCCATTCAGCTTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp CTTCTGTGTTCTTCCCATCTTCCGTCAACCTCAGACAGCTCATGCTaGCCTTTGGTAACGGAAGCTGAGCTGCTGCCTTTCATCATGCCT +
Preference number: 5 (lower is better)
Translates to: LLCSSHLPSTSDSSC*PLVTEAELLPFIMP
Trigger: AGGCATGATGAAAGGCAGCAGCTCAGCTTCCGTTACCAAAGGGCAGCATGAGCTGTCTGAGGTTGACGGAAGATGGGAAGAACACAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp AGGCTTCTGTGTTCTTCCCATCTTCCGTCAACCTCAGACAGCTCATaGTGCCCTTTGGTAACGGAAGCTGAGCTGCTGCCTTTCATCATG +
Preference number: 5 (lower is better)
Translates to: RLLCSSHLPSTSDSS*CPLVTEAELLPFIM
Trigger: CATGATGAAAGGCAGCAGCTCAGCTTCCGTTACCAAAGGGCAGCATGAGCTGTCTGAGGTTGACGGAAGATGGGAAGAACACAGAAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 90 bp CCAGGAGGCTGGTCAATGATGGAGAAGCTGAATGGCGCACTGTTCTaGGCCCCATCCAAATCCTCTGCAGTGACATTCACATATGGTTCA +
Preference number: 5 (lower is better)
Translates to: PGGWSMMEKLNGALF*APSKSSAVTFTYGS
Trigger: TGAACCATATGTGAATGTCACTGCAGAGGATTTGGATGGGGCCCAGAACAGTGCGCCATTCAGCTTCTCCATCATTGACCAGCCTCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp GAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGAGCCTCAAAGCCACCGGCGTGGCCTTGTACTaGCTCAGAATGGACTTGTGG +
Preference number: 5 (lower is better)
Translates to: ETRKMVLCTKEQWSLKATGVALY*LRMDLW
Trigger: CCACAAGTCCATTCTGAGCAAGTACAAGGCCACGCC...GGTGGCTTTGAGGCTCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp AGTGGTTTGTGGAACTTATCTTGTGCCATAGATAATGGCTGGGGTTCTGTGAGAAGCGATGGCACCACCTaGTCCTCAGGAGGTGCCCCT +
Preference number: 5 (lower is better)
Translates to: SGLWNLSCAIDNGWGSVRSDGTT*SSGGAP
Trigger: AGGGGCACCTCCTGAGGACAAGGTGGTGCCATCGCT...TCTCACAGAACCCCAGCCATTATCTATGGCACAAGATAAGTTCCACAAACCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp AGCTTGCTGGACTGGCTTGTCTGTTATCTGCCCGTTACCATCTCTTaGTTCCACCGTCAAGGAATAGCTGCTGTGTTCCTCTCTGTCCAA +
Preference number: 5 (lower is better)
Translates to: SLLDWLVCYLPVTIS*FHRQGIAAVFLSVQ
Trigger: TTGGACAGAGAGGAACACAGCAGCTATTCCTTGACGGTGGAAGCAAGAGATGGTAACGGGCAGATAACAGACAAGCCAGTCCAGCAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS TCA 90 bp CCATGTGAAGGTCGTCTTCCCCATTGTAGGAGGCCGCTTTCTCTGTaGAGTAACTTCTTAAGAATTCCTCATTCACGGCAACGGCTCCTC +
Preference number: 5 (lower is better)
Translates to: PCEGRLPHCRRPLSL*SNFLRIPHSRQRLL
Trigger: GAGGAGCCGTTGCCGTGAATGAGGAATTCTTAAGAAGTTACTTCACAGAGAAAGCGGCCTCCTACAATGGGGAAGACGACCTTCACATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 90 bp GACTTTTTCTTCATTGGCATAATGCTGATCCACCAAGGTGGAGGTTaGAGCATACACCCTCTCTGTCACGATCAGGCTCTGTGGCTGTCT +
Preference number: 5 (lower is better)
Translates to: DFFFIGIMLIHQGGG*SIHPLCHDQALWLS
Trigger: AGACAGCCACAGAGCCTGATCGTGACAGAGAGGGTGTATGCTCCAACCTCCACCTTGGTGGATCAGCATTATGCCAATGAAGAAAAAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp AATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCCCACCAAGGTGGAGGTaGGAGCATACACCCTCTCTG +
Preference number: 5 (lower is better)
Translates to: NANHPLGKQGRWYSAQKSPPRWR*EHTPSL
Trigger: CAGAGAGGGTGTATGCTCCAACCTCCACCTTGGTGG...GCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp ATGTGCAGAGAAATACACACTATGTATTCTTATCCTGACAGTGTTCTAAAGTCTCTGCCACGCTGGGCATaGCCAGAGTGGGCTGCACGC +
Preference number: 5 (lower is better)
Translates to: MCREIHTMYSYPDSVLKSLPRWA*PEWAAR
Trigger: GCGTGCAGCCCACTCTGGCAATGCCCAGCGTGGCAG...AGACTTTAGAACACTGTCAGGATAAGAATACATAGTGTGTATTTCTCTGCACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp TTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGTTCTGGACTAAAGGCCGTGGTTATAGTAGAATaGGGACGATCAGATTCCTCT +
Preference number: 5 (lower is better)
Translates to: LASNPERFACFLSSGLKAVVIVE*GRSDSS
Trigger: AGAGGAATCTGATCGTCCCAATTCTACTATAACCAC...GGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp TCCATTGCCTCACTAGCTCGGAAAGAGACTACGCTGCTCTTGAAATaGATGCCTTCAACCACGTTCTTGACCTTGACAGTGATGGGAATG +
Preference number: 5 (lower is better)
Translates to: SIASLARKETTLLLK*MPSTTFLTLTVMGM
Trigger: CATTCCCATCACTGTCAAGGTCAAGAACGTGGTTGAAGGCATTCATTTCAAGAGCAGCGTAGTCTCTTTCCGAGCTAGTGAGGCAATGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp ATAATATTACCAGAAGCCACAGGATCAGGTGGCGGTACTACCTTCTaGCTCTGCCTGGAAGATACAGAGCTCTCAGTGACGATTTCCTGT +
Preference number: 5 (lower is better)
Translates to: IILPEATGSGGGTTF*LCLEDTELSVTISC
Trigger: ACAGGAAATCGTCACTGAGAGCTCTGTATCTTCCAGGCAGAGTCAGAAGGTAGTACCGCCACCTGATCCTGTGGCTTCTGGTAATATTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 90 bp GTCATTGACATCCAATATACGGATCTGAACTTGAGCTTGCTGGACTaGCTTGTCTGTTATCTGCCCGTTACCATCTCTTGCTTCCACCGT +
Preference number: 5 (lower is better)
Translates to: VIDIQYTDLNLSLLD*LVCYLPVTISCFHR
Trigger: ACGGTGGAAGCAAGAGATGGTAACGGGCAGATAACAGACAAGCCAGTCCAGCAAGCTCAAGTTCAGATCCGTATATTGGATGTCAATGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS-3UTR CAA 90 bp CTGGGGGTTGAACCCAGGACCTTACACATGCTAGGCAAGCCATCTACCACTGAGACAGGTATATTGTCATaGACATCCAATATACGGATC +
Preference number: 5 (lower is better)
Translates to: LGVEPRTLHMLGKPSTTETGILS*TSNIRI
Trigger: GATCCGTATATTGGATGTCAATGACAATATACCTGT...CTCAGTGGTAGATGGCTTGCCTAGCATGTGTAAGGTCCTGGGTTCAACCCCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CAA 90 bp TTGGCCTCGAACCCGGAGAGATTTGCCTGCTTCTTGAGTTCTGGACTAAAGGCCGTCCCCTCATACATTTaGTTTTCTACCACAGGTATA +
Preference number: 5 (lower is better)
Translates to: LASNPERFACFLSSGLKAVPSYI*FSTTGI
Trigger: TATACCTGTGGTAGAAAACAAAATGTATGAGGGGAC...GGCCTTTAGTCCAGAACTCAAGAAGCAGGCAAATCTCTCCGGGTTCGAGGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp AGTGGTTTGTGGAACTTATCTTGTGCCATAGATAATGGCTGGGGTTCTGTGAGAACCACGTTCTTGACCTaGACAGTGATGGGAATGGGC +
Preference number: 5 (lower is better)
Translates to: SGLWNLSCAIDNGWGSVRTTFLT*TVMGMG
Trigger: GCCCATTCCCATCACTGTCAAGGTCAAGAACGTGGT...TCTCACAGAACCCCAGCCATTATCTATGGCACAAGATAAGTTCCACAAACCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp CCCTCTGGTGTACTCAGGGTTCCAGTGGAGATGAAAGAGTGGAGATGTGTCTCTATATGGCCACAACCTTaGCAGTGTAGGTACCATTTT +
Preference number: 5 (lower is better)
Translates to: PSGVLRVPVEMKEWRCVSIWPQP*QCRYHF
Trigger: AAAATGGTACCTACACTGCAAAGGTTGTGGCCATAT...AGAGACACATCTCCACTCTTTCATCTCCACTGGAACCCTGAGTACACCAGAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp GAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATATGCATGGTGCTATGCTaGGTGACCCTGGTGGAAGAT +
Preference number: 5 (lower is better)
Translates to: EMKEWRCVSGWMSYLVPICMVLC*VTLVED
Trigger: ATCTTCCACCAGGGTCACCAAGCATAGCACCATGCA...TATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp CCCTCTGGTGTACTCAGGGTTCCAGTGGAGATGAAAGAGTGGAGATGTGTCTCTTTAGGAGTAAGAATGTaGCATGGTGCTATGCTTGGT +
Preference number: 5 (lower is better)
Translates to: PSGVLRVPVEMKEWRCVSLGVRM*HGAMLG
Trigger: ACCAAGCATAGCACCATGCAACATTCTTACTCCTAA...AGAGACACATCTCCACTCTTTCATCTCCACTGGAACCCTGAGTACACCAGAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 90 bp GACAATTCTGTAGGAGACTTTAGCATTCAGAGTCTCCGGGTCATCTaGATCTGTGGCGGTGATTTTCATCACAAGTGTATGTGCTGCACT +
Preference number: 5 (lower is better)
Translates to: DNSVGDFSIQSLRVI*ICGGDFHHKCMCCT
Trigger: AGTGCAGCACATACACTTGTGATGAAAATCACCGCCACAGATGCAGATGACCCGGAGACTCTGAATGCTAAAGTCTCCTACAGAATTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS-3UTR CAA 90 bp AATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCTGCTTAGGGAACGGTTaGCCTTCATTTCTTGGGCTG +
Preference number: 5 (lower is better)
Translates to: NANHPLGKQGRWYSAQKSCLGNG*PSFLGL
Trigger: CAGCCCAAGAAATGAAGGCAAACCGTTCCCTAAGCA...GCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp AGTGGTTTGTGGAACTTATCTTGTGCCATAGATAATGGCTGGGGTTCTGTGAGACCTTCAACCACGTTCTaGACCTTGACAGTGATGGGA +
Preference number: 5 (lower is better)
Translates to: SGLWNLSCAIDNGWGSVRPSTTF*TLTVMG
Trigger: TCCCATCACTGTCAAGGTCAAGAACGTGGTTGAAGG...TCTCACAGAACCCCAGCCATTATCTATGGCACAAGATAAGTTCCACAAACCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp CAACATAAACCAGCTGAAACAAAGGATGGGTCTGTGGGCTTTCCCTATATAAACGATCTGAACTTGAGCTaGCTGGACTGGCTTGTCTGT +
Preference number: 5 (lower is better)
Translates to: QHKPAETKDGSVGFPYINDLNLS*LDWLVC
Trigger: ACAGACAAGCCAGTCCAGCAAGCTCAAGTTCAGATC...GTTTATATAGGGAAAGCCCACAGACCCATCCTTTGTTTCAGCTGGTTTATGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS GCA 90 bp TCCCTTCCCAGTGTACTTGTACGTGATTTTTATCCCTTTTTCTTCTaGAAGGTCAGAGTGTATCTTGGCAATCGGGTTCTTTCTGGACAG +
Preference number: 5 (lower is better)
Translates to: SLPSVLVRDFYPFFF*KVRVYLGNRVLSGQ
Trigger: CTGTCCAGAAAGAACCCGATTGCCAAGATACACTCTGACCTTGCAGAAGAAAAAGGGATAAAAATCACGTACAAGTACACTGGGAAGGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS GCA 90 bp AACTTGAAAATTTCCAATCGACCTGCTGAGGCTGGATCTATCCATTaGCTCACTAGCTCGGAAAGAGACTACGCTGCTCTTGAAATGAAT +
Preference number: 5 (lower is better)
Translates to: NLKISNRPAEAGSIH*LTSSERDYAALEMN
Trigger: ATTCATTTCAAGAGCAGCGTAGTCTCTTTCCGAGCTAGTGAGGCAATGGATAGATCCAGCCTCAGCAGGTCGATTGGAAATTTTCAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp AGTGGTTTGTGGAACTTATCTTGTGCCATAGATAATGGCTGGGGTTCTGTGAGACGCATGACTTCTACATaGACCTGGTTTTCTTCCACT +
Preference number: 5 (lower is better)
Translates to: SGLWNLSCAIDNGWGSVRRMTST*TWFSST
Trigger: AGTGGAAGAAAACCAGGTCAATGTAGAAGTCATGCG...TCTCACAGAACCCCAGCCATTATCTATGGCACAAGATAAGTTCCACAAACCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 90 bp GACATATCTAGATTCAAAGTCAGGAATCTTTACAAGCTTAATCTCTaGAGTGACGGAGTCCACAGAGACCCAGTTGTCAGTGTCTTGCAC +
Preference number: 5 (lower is better)
Translates to: DISRFKVRNLYKLNL*SDGVHRDPVVSVLH
Trigger: GTGCAAGACACTGACAACTGGGTCTCTGTGGACTCCGTCACTTCAGAGATTAAGCTTGTAAAGATTCCTGACTTTGAATCTAGATATGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGAGATCTGAACTTGAGCTaGCTGGACTGGCTTGTCTGT +
Preference number: 5 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRDLNLS*LDWLVC
Trigger: ACAGACAAGCCAGTCCAGCAAGCTCAAGTTCAGATC...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp GAGACAGGGTTTTTCTATGTAGCCCTGGGTGTCCTGGAACCCTTTATATACACCACAGGTATATTGTCATaGACATCCAATATACGGATC +
Preference number: 5 (lower is better)
Translates to: ETGFFYVALGVLEPFIYTTGILS*TSNIRI
Trigger: GATCCGTATATTGGATGTCAATGACAATATACCTGT...GGTGTATATAAAGGGTTCCAGGACACCCAGGGCTACATAGAAAAACCCTGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp AGTGGTTTGTGGAACTTATCTTGTGCCATAGATAATGGCTGGGGTTCTGTGAGATTGCTCAGAATGGACTaGTGGAAAGCTGCTTTGTTA +
Preference number: 5 (lower is better)
Translates to: SGLWNLSCAIDNGWGSVRLLRMD*WKAALL
Trigger: TAACAAAGCAGCTTTCCACAAGTCCATTCTGAGCAA...TCTCACAGAACCCCAGCCATTATCTATGGCACAAGATAAGTTCCACAAACCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp AATCACCCTTTGGGGAAACAAGGAAGATGGTACTCTGCACAAAAGAGCAGTGGACCAGTTGTCAGTGTCTaGCACTTTTACATATGTTAC +
Preference number: 5 (lower is better)
Translates to: NHPLGKQGRWYSAQKSSGPVVSV*HFYICY
Trigger: GTAACATATGTAAAAGTGCAAGACACTGACAACTGG...TCCACTGCTCTTTTGTGCAGAGTACCATCTTCCTTGTTTCCCCAAAGGGTGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp GAGATGAAAGAGTGGAGATGTGTCTCTGGGTGGATGAGCTATTTGGTACCTATAACGGGACAATTGTCATaGACGTCTTCAACAGTGATA +
Preference number: 5 (lower is better)
Translates to: EMKEWRCVSGWMSYLVPITGQLS*TSSTVI
Trigger: TATCACTGTTGAAGACGTCAATGACAATTGTCCCGT...TATAGGTACCAAATAGCTCATCCACCCAGAGACACATCTCCACTCTTTCATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp GACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCACTATATGCTTAGGGAACGGTTaGCCTTCATTTCTTGGGCTG +
Preference number: 5 (lower is better)
Translates to: DFQQSSFQVLGLYVQVTICLGNG*PSFLGL
Trigger: CAGCCCAAGAAATGAAGGCAAACCGTTCCCTAAGCA...TATAGTGACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CAA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATTGATGTCCAGAACTTaGATGCGTAGTTCCAAGGGC +
Preference number: 5 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRLMSRT*MRSSKG
Trigger: GCCCTTGGAACTACGCATCAAAGTTCTGGACATCAA...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp CCTAGGTTGTCCTTGGACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATAGAACATATGACTATTaGCAGGCTCCTGAGAGACAA +
Preference number: 5 (lower is better)
Translates to: PRLSLDFQQSSFQVLGLYRTYDY*QAPERQ
Trigger: TTGTCTCTCAGGAGCCTGCAAATAGTCATATGTTCT...ATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTCCAAGGACAACCTAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CAA 90 bp GTCCTTGGACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCGCATGACTTCTACATaGACCTGGTTTTCTTCCACT +
Preference number: 5 (lower is better)
Translates to: VLGLSTILLSSAGIICTSRMTST*TWFSST
Trigger: AGTGGAAGAAAACCAGGTCAATGTAGAAGTCATGCG...ACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTCCAAGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CAA 90 bp TTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCACTATATCCATTGATGTCCAGAACTTaGATGCGTAGTTCCAAGGGC +
Preference number: 5 (lower is better)
Translates to: FNNPPFKCWDYMYKSLYPLMSRT*MRSSKG
Trigger: GCCCTTGGAACTACGCATCAAAGTTCTGGACATCAA...TGGATATAGTGACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS-3UTR CAA 90 bp ACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGATGGTACACTGGCTCGTTGTCATaGATGTCCAGAACTTTGATG +
Preference number: 5 (lower is better)
Translates to: TNVKTNANHPLGKQGRWYTGSLS*MSRTLM
Trigger: CATCAAAGTTCTGGACATCAATGACAACGAGCCAGT...GTACCATCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGAAGAACATATGACTATTaGCAGGCTCCTGAGAGACAA +
Preference number: 5 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRRTYDY*QAPERQ
Trigger: TTGTCTCTCAGGAGCCTGCAAATAGTCATATGTTCT...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp CAAGGAACAAATGTAAAAACGAATGCAAATCACCCTTTGGGGAAACAAGGAAGAACTTCAGCTAGGGTCTaGAATTTAAGGCCAAGATCA +
Preference number: 5 (lower is better)
Translates to: QGTNVKTNANHPLGKQGRTSARV*NLRPRS
Trigger: TGATCTTGGCCTTAAATTCAAGACCCTAGCTGAAGT...TCTTCCTTGTTTCCCCAAAGGGTGATTTGCATTCGTTTTTACATTTGTTCCTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS-3UTR CAA 90 bp GACTTTCAACAATCCTCCTTTCAAGTGCTGGGATTATATGTACAAGTCACTATAGTCCCCTCATACATTTaGTTTTCTACCACAGGTATA +
Preference number: 5 (lower is better)
Translates to: DFQQSSFQVLGLYVQVTIVPSYI*FSTTGI
Trigger: TATACCTGTGGTAGAAAACAAAATGTATGAGGGGAC...TATAGTGACTTGTACATATAATCCCAGCACTTGAAAGGAGGATTGTTGAAAGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS GCA 72 bp CCGTTTCCAAAGTCCAAGCAGACCACCGCCAGCAGCTaGACCAGCAGCAGCAGGGCGCACCGGTCACCCGGG +
Preference number: 6 (lower is better)
Translates to: PFPKSKQTTASS*TSSSRAHRSPG
Trigger: CCCGGGTGACCGGTGCGCCCTGCTGCTGCTGGTGCAGCTGCTGGCGGTGGTCTGCTTGGACTTTGGAAACGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS TCA 72 bp GCGGCACCAGGAGCAGGAGCAGGAGTGCTAGAATCATaGGAGCGATGGCGGCAGGGCCCAACCCGACGTAGT +
Preference number: 6 (lower is better)
Translates to: AAPGAGAGVLES*ERWRQGPTRRS
Trigger: ACTACGTCGGGTTGGGCCCTGCCGCCATCGCTCTCATGATTCTAGCACTCCTGCTCCTGCTCCTGGTGCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp GGCGGCAGGGCCCAACCCGACGTAGTTGTCATACTGTaGAGCCACACAGCCACCGCCCTTCAGACACTCGCA +
Preference number: 6 (lower is better)
Translates to: GGRAQPDVVVIL*SHTATALQTLA
Trigger: TGCGAGTGTCTGAAGGGCGGTGGCTGTGTGGCTGCACAGTATGACAACTACGTCGGGTTGGGCCCTGCCGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp CCTCCTGCTGCCACGCTGGGCATTGCCAGAGTGGGCTaGACGCCTGAGCTGGGAGCAAGGATGCTCTCTCTT +
Preference number: 6 (lower is better)
Translates to: PPAATLGIARVG*TPELGARMLSL
Trigger: AAGAGAGAGCATCCTTGCTCCCAGCTCAGGCGTGCAGCCCACTCTGGCAATGCCCAGCGTGGCAGCAGGAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp GGAATGGGGGTGAAGCCTTTGGCGCCCCCTCCACAGTaGCATATCAACAGCAAGAGCGGCACCAGGAGCAGG +
Preference number: 6 (lower is better)
Translates to: GMGVKPLAPPPQ*HINSKSGTRSR
Trigger: CCTGCTCCTGGTGCCGCTCTTGCTGTTGATATGCCACTGTGGAGGGGGCGCCAAAGGCTTCACCCCCATTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 72 bp CGGAAGCTGAGCTGCTGCCTTTCATCATGCCTTCCTTaGGCATCGCACCTCCTACGCCGCCTCTCACTGCCG +
Preference number: 6 (lower is better)
Translates to: RKLSCCLSSCLP*ASHLLRRLSLP
Trigger: CGGCAGTGAGAGGCGGCGTAGGAGGTGCGATGCTCAAGGAAGGCATGATGAAAGGCAGCAGCTCAGCTTCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp TGCCGAGCTCTCTGCATGATCGGCCACCAGAAGCGATaGCACCACCTTGTCCTCAGGAGGTGCCCCTTCATT +
Preference number: 6 (lower is better)
Translates to: CRALCMIGHQKR*HHLVLRRCPFI
Trigger: AATGAAGGGGCACCTCCTGAGGACAAGGTGGTGCCATCGCTTCTGGTGGCCGATCATGCAGAGAGCTCGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp CGCTGGGCATTGCCAGAGTGGGCTGCACGCCTGAGCTaGGAGCAAGGATGCTCTCTCTTTCCCTCACCATTA +
Preference number: 6 (lower is better)
Translates to: RWALPEWAARLS*EQGCSLFPSPL
Trigger: TAATGGTGAGGGAAAGAGAGAGCATCCTTGCTCCCAGCTCAGGCGTGCAGCCCACTCTGGCAATGCCCAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp ACGGAAGCTGAGCTGCTGCCTTTCATCATGCCTTCCTaGAGCATCGCACCTCCTACGCCGCCTCTCACTGCC +
Preference number: 6 (lower is better)
Translates to: TEAELLPFIMPS*SIAPPTPPLTA
Trigger: GGCAGTGAGAGGCGGCGTAGGAGGTGCGATGCTCAAGGAAGGCATGATGAAAGGCAGCAGCTCAGCTTCCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp CAAGGGTGCAGCATCTCTATTGTCCCAGGAATGGGGGTGAAGCCTTaGGCGCCCCCTCCACAGTGGCATATCAACAGCAAGAGCGGCACC +
Preference number: 6 (lower is better)
Translates to: QGCSISIVPGMGVKP*APPPQWHINSKSGT
Trigger: GGTGCCGCTCTTGCTGTTGATATGCCACTGTGGAGGGGGCGCCAAAGGCTTCACCCCCATTCCTGGGACAATAGAGATGCTGCACCCTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp CCTTTGGTAACGGAAGCTGAGCTGCTGCCTTTCATCATGCCTTCCTaGAGCATCGCACCTCCTACGCCGCCTCTCACTGCCGAGCTCTCT +
Preference number: 6 (lower is better)
Translates to: PLVTEAELLPFIMPS*SIAPPTPPLTAELS
Trigger: AGAGAGCTCGGCAGTGAGAGGCGGCGTAGGAGGTGCGATGCTCAAGGAAGGCATGATGAAAGGCAGCAGCTCAGCTTCCGTTACCAAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 72 bp TCGTTGGCAGCGATGGTTCCTGCTGTCCTTACATGGTaGGTGGCCCCAGCGGTGAGGAGGCTTCTGTGTTCT +
Preference number: 6 (lower is better)
Translates to: SLAAMVPAVLTW*VAPAVRRLLCS
Trigger: AGAACACAGAAGCCTCCTCACCGCTGGGGCCACTCACCATGTAAGGACAGCAGGAACCATCGCTGCCAACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp TGTGTGACTTTCTCTGTGTGCACTTCGTGCAGAGGTTaGGGGGCGGGGAAGCCGGTGTTAGAGGAGTACGCG +
Preference number: 6 (lower is better)
Translates to: CVTFSVCTSCRG*GAGKPVLEEYA
Trigger: CGCGTACTCCTCTAACACCGGCTTCCCCGCCCCCAAACCTCTGCACGAAGTGCACACAGAGAAAGTCACACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp TTCGCCCTCCCGCAGAGCCACAGGGGCAGTGATCCAGGCCCTCTTTaGACGAACCAAGTGAGTGTGCTTAGGGAACGGTTTGCCTTCATT +
Preference number: 6 (lower is better)
Translates to: FALPQSHRGSDPGPL*TNQVSVLRERFAFI
Trigger: AATGAAGGCAAACCGTTCCCTAAGCACACTCACTTGGTTCGTCAAAAGAGGGCCTGGATCACTGCCCCTGTGGCTCTGCGGGAGGGCGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 90 bp ACGATTTCCTGTGTGACTTTCTCTGTGTGCACTTCGTGCAGAGGTTaGGGGGCGGGGAAGCCGGTGTTAGAGGAGTACGCGCTCTCTGAG +
Preference number: 6 (lower is better)
Translates to: TISCVTFSVCTSCRG*GAGKPVLEEYALSE
Trigger: CTCAGAGAGCGCGTACTCCTCTAACACCGGCTTCCCCGCCCCCAAACCTCTGCACGAAGTGCACACAGAGAAAGTCACACAGGAAATCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp AAGGGAATCTCACTTCTCCCGCGTTTCCGCTCGCTCTaGTGCAGCAGCACACTGGTACTTTCCTGGTGCGTT +
Preference number: 6 (lower is better)
Translates to: KGISLLPRFRSL*CSSTLVLSWCV
Trigger: AACGCACCAGGAAAGTACCAGTGTGCTGCTGCAGCAGAGCGAGCGGAAACGCGGGAGAAGTGAGATTCCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp CGTTCCAGGAGGCTGGTCAATGATGGAGAAGCTGAATaGCGCACTGTTCTGGGCCCCATCCAAATCCTCTGC +
Preference number: 6 (lower is better)
Translates to: RSRRLVNDGEAE*RTVLGPIQILC
Trigger: GCAGAGGATTTGGATGGGGCCCAGAACAGTGCGCCATTCAGCTTCTCCATCATTGACCAGCCTCCTGGAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp TGGAAGACCCCGTGGCTCTTGTCCTTACGGCTTCGTTaGCAGCGATGGTTCCTGCTGTCCTTACATGGTGAG +
Preference number: 6 (lower is better)
Translates to: WKTPWLLSLRLR*QRWFLLSLHGE
Trigger: CTCACCATGTAAGGACAGCAGGAACCATCGCTGCCAACGAAGCCGTAAGGACAAGAGCCACGGGGTCTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp CCGCAGAGCCACAGGGGCAGTGATCCAGGCCCTCTTTaGACGAACCAAGTGAGTGTGCTTAGGGAACGGTTT +
Preference number: 6 (lower is better)
Translates to: PQSHRGSDPGPL*TNQVSVLRERF
Trigger: AAACCGTTCCCTAAGCACACTCACTTGGTTCGTCAAAAGAGGGCCTGGATCACTGCCCCTGTGGCTCTGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS TCA 72 bp TTCCTGCTGTCCTTACATGGTGAGTGGCCCCAGCGGTaGGGAGGCTTCTGTGTTCTTCCCATCTTCCGTCAA +
Preference number: 6 (lower is better)
Translates to: FLLSLHGEWPQR*GGFCVLPIFRQ
Trigger: TTGACGGAAGATGGGAAGAACACAGAAGCCTCCTCACCGCTGGGGCCACTCACCATGTAAGGACAGCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 72 bp CCAGAAGCCACAGGATCAGGTGGCGGTACTACCTTCTaGCTCTGCCTGGAAGATACAGAGCTCTCAGTGACG +
Preference number: 6 (lower is better)
Translates to: PEATGSGGGTTF*LCLEDTELSVT
Trigger: CGTCACTGAGAGCTCTGTATCTTCCAGGCAGAGTCAGAAGGTAGTACCGCCACCTGATCCTGTGGCTTCTGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp TCGCTCTGCTGCAGCAGCACACTGGTACTTTCCTGGTaGGTTATTTTCCACTTCTGTGCCGTTCCAGGAGGC +
Preference number: 6 (lower is better)
Translates to: SLCCSSTLVLSW*VIFHFCAVPGG
Trigger: GCCTCCTGGAACGGCACAGAAGTGGAAAATAACGCACCAGGAAAGTACCAGTGTGCTGCTGCAGCAGAGCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp GGAATCTCACTTCTCCCGCGTTTCCGCTCGCTCTGCTaGAGCAGCACACTGGTACTTTCCTGGTGCGTTATT +
Preference number: 6 (lower is better)
Translates to: GISLLPRFRSLC*SSTLVLSWCVI
Trigger: AATAACGCACCAGGAAAGTACCAGTGTGCTGCTGCAGCAGAGCGAGCGGAAACGCGGGAGAAGTGAGATTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp ACGATTTCCTGTGTGACTTTCTCTGTGTGCACTTCGTaGAGAGGTTTGGGGGCGGGGAAGCCGGTGTTAGAG +
Preference number: 6 (lower is better)
Translates to: TISCVTFSVCTS*RGLGAGKPVLE
Trigger: CTCTAACACCGGCTTCCCCGCCCCCAAACCTCTGCACGAAGTGCACACAGAGAAAGTCACACAGGAAATCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp CCAGAGTGGGCTGCACGCCTGAGCTGGGAGCAAGGATaGTCTCTCTTTCCCTCACCATTACATACTGTGCAT +
Preference number: 6 (lower is better)
Translates to: PEWAARLSWEQG*SLFPSPLHTVH
Trigger: ATGCACAGTATGTAATGGTGAGGGAAAGAGAGAGCATCCTTGCTCCCAGCTCAGGCGTGCAGCCCACTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp CGCTCGCTCTGCTGCAGCAGCACACTGGTACTTTCCTaGTGCGTTATTTTCCACTTCTGTGCCGTTCCAGGA +
Preference number: 6 (lower is better)
Translates to: RSLCCSSTLVLS*CVIFHFCAVPG
Trigger: TCCTGGAACGGCACAGAAGTGGAAAATAACGCACCAGGAAAGTACCAGTGTGCTGCTGCAGCAGAGCGAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp AGCATCTCTATTGTCCCAGGAATGGGGGTGAAGCCTTaGGCGCCCCCTCCACAGTGGCATATCAACAGCAAG +
Preference number: 6 (lower is better)
Translates to: SISIVPGMGVKP*APPPQWHINSK
Trigger: CTTGCTGTTGATATGCCACTGTGGAGGGGGCGCCAAAGGCTTCACCCCCATTCCTGGGACAATAGAGATGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp TCTTCCCATCTTCCGTCAACCTCAGACAGCTCATGCTaGCCTTTGGTAACGGAAGCTGAGCTGCTGCCTTTC +
Preference number: 6 (lower is better)
Translates to: SSHLPSTSDSSC*PLVTEAELLPF
Trigger: GAAAGGCAGCAGCTCAGCTTCCGTTACCAAAGGGCAGCATGAGCTGTCTGAGGTTGACGGAAGATGGGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp TGTTCTTCCCATCTTCCGTCAACCTCAGACAGCTCATaGTGCCCTTTGGTAACGGAAGCTGAGCTGCTGCCT +
Preference number: 6 (lower is better)
Translates to: CSSHLPSTSDSS*CPLVTEAELLP
Trigger: AGGCAGCAGCTCAGCTTCCGTTACCAAAGGGCAGCATGAGCTGTCTGAGGTTGACGGAAGATGGGAAGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 72 bp CTCAGACAGCTCATGCTGCCCTTTGGTAACGGAAGCTaGGCTGCTGCCTTTCATCATGCCTTCCTTGAGCAT +
Preference number: 6 (lower is better)
Translates to: LRQLMLPFGNGS*AAAFHHAFLEH
Trigger: ATGCTCAAGGAAGGCATGATGAAAGGCAGCAGCTCAGCTTCCGTTACCAAAGGGCAGCATGAGCTGTCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp TTGTCCTCAGGAGGTGCCCCTTCATTATTCCAAGGGTaGAGCATCTCTATTGTCCCAGGAATGGGGGTGAAG +
Preference number: 6 (lower is better)
Translates to: LSSGGAPSLFQG*SISIVPGMGVK
Trigger: CTTCACCCCCATTCCTGGGACAATAGAGATGCTGCACCCTTGGAATAATGAAGGGGCACCTCCTGAGGACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp CCGTGTCTTCCTGAGAGTAAACGAGAAGGCAGTCTTTaGCCATGTGAAGGTCGTCTTCCCCATTGTAGGAGG +
Preference number: 6 (lower is better)
Translates to: PCLPESKREGSL*PCEGRLPHCRR
Trigger: CCTCCTACAATGGGGAAGACGACCTTCACATGGCCAAAGACTGCCTTCTCGTTTACTCTCAGGAAGACACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp CATCTTCCGTCAACCTCAGACAGCTCATGCTGCCCTTaGGTAACGGAAGCTGAGCTGCTGCCTTTCATCATG +
Preference number: 6 (lower is better)
Translates to: HLPSTSDSSCCP*VTEAELLPFIM
Trigger: CATGATGAAAGGCAGCAGCTCAGCTTCCGTTACCAAAGGGCAGCATGAGCTGTCTGAGGTTGACGGAAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp GAGCTTGCTGGACTGGCTTGTCTGTTATCTGCCCGTTACCATCTCTaGCTTCCACCGTCAAGGAATAGCTGCTGTGTTCCTCTCTGTCCA +
Preference number: 6 (lower is better)
Translates to: ELAGLACLLSARYHL*LPPSRNSCCVPLCP
Trigger: TGGACAGAGAGGAACACAGCAGCTATTCCTTGACGGTGGAAGCAAGAGATGGTAACGGGCAGATAACAGACAAGCCAGTCCAGCAAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 90 bp GGACTTTTTCTTCATTGGCATAATGCTGATCCACCAAGGTGGAGGTaGGAGCATACACCCTCTCTGTCACGATCAGGCTCTGTGGCTGTC +
Preference number: 6 (lower is better)
Translates to: GLFLHWHNADPPRWR*EHTPSLSRSGSVAV
Trigger: GACAGCCACAGAGCCTGATCGTGACAGAGAGGGTGTATGCTCCAACCTCCACCTTGGTGGATCAGCATTATGCCAATGAAGAAAAAGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS TCA 72 bp GGTTTGCCTTCATTTCTTGGGCTGAAGACCTCTAAGTaGAGTCCGTTTCCAAAGTCCAAGCAGACCACCGCC +
Preference number: 6 (lower is better)
Translates to: GLPSFLGLKTSK*SPFPKSKQTTA
Trigger: GGCGGTGGTCTGCTTGGACTTTGGAAACGGACTTCACTTAGAGGTCTTCAGCCCAAGAAATGAAGGCAAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS GCA 72 bp GACTGGCTTGTCTGTTATCTGCCCGTTACCATCTCTTaGTTCCACCGTCAAGGAATAGCTGCTGTGTTCCTC +
Preference number: 6 (lower is better)
Translates to: DWLVCYLPVTIS*FHRQGIAAVFL
Trigger: GAGGAACACAGCAGCTATTCCTTGACGGTGGAAGCAAGAGATGGTAACGGGCAGATAACAGACAAGCCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS GCA 72 bp GAATGGCGCACTGTTCTGGGCCCCATCCAAATCCTCTaGAGTGACATTCACATATGGTTCATCCTCACAGAC +
Preference number: 6 (lower is better)
Translates to: EWRTVLGPIQIL*SDIHIWFILTD
Trigger: GTCTGTGAGGATGAACCATATGTGAATGTCACTGCAGAGGATTTGGATGGGGCCCAGAACAGTGCGCCATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp TGGTCAATGATGGAGAAGCTGAATGGCGCACTGTTCTaGGCCCCATCCAAATCCTCTGCAGTGACATTCACA +
Preference number: 6 (lower is better)
Translates to: WSMMEKLNGALF*APSKSSAVTFT
Trigger: TGTGAATGTCACTGCAGAGGATTTGGATGGGGCCCAGAACAGTGCGCCATTCAGCTTCTCCATCATTGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp TTCATTGGCATAATGCTGATCCACCAAGGTGGAGGTTaGAGCATACACCCTCTCTGTCACGATCAGGCTCTG +
Preference number: 6 (lower is better)
Translates to: FIGIMLIHQGGG*SIHPLCHDQAL
Trigger: CAGAGCCTGATCGTGACAGAGAGGGTGTATGCTCCAACCTCCACCTTGGTGGATCAGCATTATGCCAATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp GGACTGGCTTGTCTGTTATCTGCCCGTTACCATCTCTaGCTTCCACCGTCAAGGAATAGCTGCTGTGTTCCT +
Preference number: 6 (lower is better)
Translates to: GLACLLSARYHL*LPPSRNSCCVP
Trigger: AGGAACACAGCAGCTATTCCTTGACGGTGGAAGCAAGAGATGGTAACGGGCAGATAACAGACAAGCCAGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 72 bp CTCCGTACAGAGTCCACCAGCACGGGACAATTGTCATaGACGTCTTCAACAGTGATAACGATGGTGCCAGTG +
Preference number: 6 (lower is better)
Translates to: LRTESTSTGQLS*TSSTVITMVPV
Trigger: CACTGGCACCATCGTTATCACTGTTGAAGACGTCAATGACAATTGTCCCGTGCTGGTGGACTCTGTACGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp CTTCATTGGCATAATGCTGATCCACCAAGGTGGAGGTaGGAGCATACACCCTCTCTGTCACGATCAGGCTCT +
Preference number: 6 (lower is better)
Translates to: LHWHNADPPRWR*EHTPSLSRSGS
Trigger: AGAGCCTGATCGTGACAGAGAGGGTGTATGCTCCAACCTCCACCTTGGTGGATCAGCATTATGCCAATGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp TCATCCTCACAGACACTCCGTACAGAGTCCACCAGCACGGGACAATaGTCATTGACGTCTTCAACAGTGATAACGATGGTGCCAGTGATG +
Preference number: 6 (lower is better)
Translates to: SSSQTLRTESTSTGQ*SLTSSTVITMVPVM
Trigger: CATCACTGGCACCATCGTTATCACTGTTGAAGACGTCAATGACAATTGTCCCGTGCTGGTGGACTCTGTACGGAGTGTCTGTGAGGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp ACTGGTACTTTCCTGGTGCGTTATTTTCCACTTCTGTaGCGTTCCAGGAGGCTGGTCAATGATGGAGAAGCT +
Preference number: 6 (lower is better)
Translates to: TGTFLVRYFPLL*RSRRLVNDGEA
Trigger: AGCTTCTCCATCATTGACCAGCCTCCTGGAACGGCACAGAAGTGGAAAATAACGCACCAGGAAAGTACCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp TTCTTGACCTTGACAGTGATGGGAATGGGCGTGGCCTaGTACTTGCTCAGAATGGACTTGTGGAAAGCTGCT +
Preference number: 6 (lower is better)
Translates to: FLTLTVMGMGVA*YLLRMDLWKAA
Trigger: AGCAGCTTTCCACAAGTCCATTCTGAGCAAGTACAAGGCCACGCCCATTCCCATCACTGTCAAGGTCAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp TCAACCACGTTCTTGACCTTGACAGTGATGGGAATGGGCGTGGCCTaGTACTTGCTCAGAATGGACTTGTGGAAAGCTGCTTTGTTAGTG +
Preference number: 6 (lower is better)
Translates to: STTFLTLTVMGMGVA*YLLRMDLWKAALLV
Trigger: CACTAACAAAGCAGCTTTCCACAAGTCCATTCTGAGCAAGTACAAGGCCACGCCCATTCCCATCACTGTCAAGGTCAAGAACGTGGTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp AAGGATGCTCTCTCTTTCCCTCACCATTACATACTGTaGATCTTTCAGATGCTGGGTGACCTCAAGGGGCTT +
Preference number: 6 (lower is better)
Translates to: KDALSFPHHYIL*IFQMLGDLKGL
Trigger: AAGCCCCTTGAGGTCACCCAGCATCTGAAAGATGCACAGTATGTAATGGTGAGGGAAAGAGAGAGCATCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp CGTCACTATAATATTACCAGAAGCCACAGGATCAGGTaGCGGTACTACCTTCTGACTCTGCCTGGAAGATAC +
Preference number: 6 (lower is better)
Translates to: RHYNITRSHRIR*RYYLLTLPGRY
Trigger: GTATCTTCCAGGCAGAGTCAGAAGGTAGTACCGCCACCTGATCCTGTGGCTTCTGGTAATATTATAGTGACG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp GGAATGGGCGTGGCCTTGTACTTGCTCAGAATGGACTaGTGGAAAGCTGCTTTGTTAGTGACAATGATGCTC +
Preference number: 6 (lower is better)
Translates to: GMGVALYLLRMD*WKAALLVTMML
Trigger: GAGCATCATTGTCACTAACAAAGCAGCTTTCCACAAGTCCATTCTGAGCAAGTACAAGGCCACGCCCATTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp ACCTTGACAGTGATGGGAATGGGCGTGGCCTTGTACTaGCTCAGAATGGACTTGTGGAAAGCTGCTTTGTTA +
Preference number: 6 (lower is better)
Translates to: TLTVMGMGVALY*LRMDLWKAALL
Trigger: TAACAAAGCAGCTTTCCACAAGTCCATTCTGAGCAAGTACAAGGCCACGCCCATTCCCATCACTGTCAAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp CAGTCCCACCCTGGTGGTGGACATTTACAACTTACCTaGACAAGGGTCACAATCCCTTCATTAGTCTGTGTG +
Preference number: 6 (lower is better)
Translates to: QSHPGGGHLQLT*TRVTIPSLVCV
Trigger: CACACAGACTAATGAAGGGATTGTGACCCTTGTCAAGGTAAGTTGTAAATGTCCACCACCAGGGTGGGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120102.8
CDS CAA 90 bp TACGTGATTTTTATCCCTTTTTCTTCTGCAAGGTCAGAGTGTATCTaGGCAATCGGGTTCTTTCTGGACAGGTCTTCGCCCTCCCGCAGA +
Preference number: 6 (lower is better)
Translates to: YVIFIPFSSARSECI*AIGFFLDRSSPSRR
Trigger: TCTGCGGGAGGGCGAAGACCTGTCCAGAAAGAACCCGATTGCCAAGATACACTCTGACCTTGCAGAAGAAAAAGGGATAAAAATCACGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 90 bp ACAGTGATGGGAATGGGCGTGGCCTTGTACTTGCTCAGAATGGACTaGTGGAAAGCTGCTTTGTTAGTGACAATGATGCTCAAGTCTAGC +
Preference number: 6 (lower is better)
Translates to: TVMGMGVALYLLRMD*WKAALLVTMMLKSS
Trigger: GCTAGACTTGAGCATCATTGTCACTAACAAAGCAGCTTTCCACAAGTCCATTCTGAGCAAGTACAAGGCCACGCCCATTCCCATCACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp ACGTTCTTGACCTTGACAGTGATGGGAATGGGCGTGGCCTTGTACTaGCTCAGAATGGACTTGTGGAAAGCTGCTTTGTTAGTGACAATG +
Preference number: 6 (lower is better)
Translates to: TFLTLTVMGMGVALY*LRMDLWKAALLVTM
Trigger: CATTGTCACTAACAAAGCAGCTTTCCACAAGTCCATTCTGAGCAAGTACAAGGCCACGCCCATTCCCATCACTGTCAAGGTCAAGAACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp TCACAGACACTCCGTACAGAGTCCACCAGCACGGGACAATTGTCATaGACGTCTTCAACAGTGATAACGATGGTGCCAGTGATGGTTTTT +
Preference number: 6 (lower is better)
Translates to: SQTLRTESTSTGQLS*TSSTVITMVPVMVF
Trigger: AAAAACCATCACTGGCACCATCGTTATCACTGTTGAAGACGTCAATGACAATTGTCCCGTGCTGGTGGACTCTGTACGGAGTGTCTGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp TTTGCTAGCCAGTTATCAGAGCCCACTTCATCTGCATCGGTCACTTaGATCCGCATGACTTCTACATTGACCTGGTTTTCTTCCACTGTC +
Preference number: 6 (lower is better)
Translates to: FASQLSEPTSSASVT*IRMTSTLTWFSSTV
Trigger: GACAGTGGAAGAAAACCAGGTCAATGTAGAAGTCATGCGGATCAAAGTGACCGATGCAGATGAAGTGGGCTCTGATAACTGGCTAGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
CDS CAA 90 bp GTGCTATGCTTGGTGACCCTGGTGGAAGATGTGGTTATAGTAGAATaGGGACGATCAGATTCCTCTAGATCTAAATTGGGCAGAGGACCT +
Preference number: 6 (lower is better)
Translates to: VLCLVTLVEDVVIVE*GRSDSSRSKLGRGP
Trigger: AGGTCCTCTGCCCAATTTAGATCTAGAGGAATCTGATCGTCCCAATTCTACTATAACCACATCTTCCACCAGGGTCACCAAGCATAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp GTAGGAGACTTTAGCATTCAGAGTCTCCGGGTCATCTaGATCTGTGGCGGTGATTTTCATCACAAGTGTATG +
Preference number: 6 (lower is better)
Translates to: VGDFSIQSLRVI*ICGGDFHHKCM
Trigger: CATACACTTGTGATGAAAATCACCGCCACAGATGCAGATGACCCGGAGACTCTGAATGCTAAAGTCTCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CCA 72 bp TTATCCCTTTTTCTTCTGCAAGGTCAGAGTGTATCTTaGCAATCGGGTTCTTTCTGGACAGGTCTTCGCCCT +
Preference number: 6 (lower is better)
Translates to: LSLFLLQGQSVS*QSGSFWTGLRP
Trigger: AGGGCGAAGACCTGTCCAGAAAGAACCCGATTGCCAAGATACACTCTGACCTTGCAGAAGAAAAAGGGATAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CCA 72 bp ATCCAATATACGGATCTGAACTTGAGCTTGCTGGACTaGCTTGTCTGTTATCTGCCCGTTACCATCTCTTGC +
Preference number: 6 (lower is better)
Translates to: IQYTDLNLSLLD*LVCYLPVTISC
Trigger: GCAAGAGATGGTAACGGGCAGATAACAGACAAGCCAGTCCAGCAAGCTCAAGTTCAGATCCGTATATTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CCA 72 bp CTTTTTCTTCATTGGCATAATGCTGATCCACCAAGGTaGAGGTTGGAGCATACACCCTCTCTGTCACGATCA +
Preference number: 6 (lower is better)
Translates to: LFLHWHNADPPR*RLEHTPSLSRS
Trigger: TGATCGTGACAGAGAGGGTGTATGCTCCAACCTCCACCTTGGTGGATCAGCATTATGCCAATGAAGAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp GTCATTGACATCCAATATACGGATCTGAACTTGAGCTaGCTGGACTGGCTTGTCTGTTATCTGCCCGTTACC +
Preference number: 6 (lower is better)
Translates to: VIDIQYTDLNLS*LDWLVCYLPVT
Trigger: GGTAACGGGCAGATAACAGACAAGCCAGTCCAGCAAGCTCAAGTTCAGATCCGTATATTGGATGTCAATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 72 bp GTAGAATTGGGACGATCAGATTCCTCTAGATCTAAATaGGGCAGAGGACCTATGCTTCCCACACTAGAGAGC +
Preference number: 6 (lower is better)
Translates to: VELGRSDSSRSK*GRGPMLPTLES
Trigger: GCTCTCTAGTGTGGGAAGCATAGGTCCTCTGCCCAATTTAGATCTAGAGGAATCTGATCGTCCCAATTCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp ACATCCAGATCGATCTTTCGACCTAGGCAAACTTCAGCTAGGGTCTaGAATTTAAGGCCAAGATCATCCAGGAACAGGTCATCGAGTTCT +
Preference number: 6 (lower is better)
Translates to: TSRSIFRPRQTSARV*NLRPRSSRNRSSSS
Trigger: AGAACTCGATGACCTGTTCCTGGATGATCTTGGCCTTAAATTCAAGACCCTAGCTGAAGTTTGCCTAGGTCGAAAGATCGATCTGGATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp GTGGTTATAGTAGAATTGGGACGATCAGATTCCTCTAGATCTAAATaGGGCAGAGGACCTATGCTTCCCACACTAGAGAGCACAGTGTTC +
Preference number: 6 (lower is better)
Translates to: VVIVELGRSDSSRSK*GRGPMLPTLESTVF
Trigger: GAACACTGTGCTCTCTAGTGTGGGAAGCATAGGTCCTCTGCCCAATTTAGATCTAGAGGAATCTGATCGTCCCAATTCTACTATAACCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp CAAGGGCTTTTCCAGGTTGTTTCCTCTGGAGTCCAATaGATAGCCTGTCAGCAGAAAATATGGTGTTTCTTC +
Preference number: 6 (lower is better)
Translates to: QGLFQVVSSGVQ*IACQQKIWCFF
Trigger: GAAGAAACACCATATTTTCTGCTGACAGGCTATGCATTGGACTCCAGAGGAAACAACCTGGAAAAGCCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 72 bp TCTGCATCGGTCACTTTGATCCGCATGACTTCTACATaGACCTGGTTTTCTTCCACTGTCCCCTCATACATT +
Preference number: 6 (lower is better)
Translates to: SASVTLIRMTST*TWFSSTVPSYI
Trigger: AATGTATGAGGGGACAGTGGAAGAAAACCAGGTCAATGTAGAAGTCATGCGGATCAAAGTGACCGATGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
CDS CAA 72 bp CAGTTATCAGAGCCCACTTCATCTGCATCGGTCACTTaGATCCGCATGACTTCTACATTGACCTGGTTTTCT +
Preference number: 6 (lower is better)
Translates to: QLSEPTSSASVT*IRMTSTLTWFS
Trigger: AGAAAACCAGGTCAATGTAGAAGTCATGCGGATCAAAGTGACCGATGCAGATGAAGTGGGCTCTGATAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
CDS CAA 72 bp AGTGACGGAGTCCACAGAGACCCAGTTGTCAGTGTCTaGCACTTTTACATATGTTACTTTAGCTGCTTGACC +
Preference number: 6 (lower is better)
Translates to: SDGVHRDPVVSV*HFYICYFSCLT
Trigger: GGTCAAGCAGCTAAAGTAACATATGTAAAAGTGCAAGACACTGACAACTGGGTCTCTGTGGACTCCGTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp TCGATCTTTCGACCTAGGCAAACTTCAGCTAGGGTCTaGAATTTAAGGCCAAGATCATCCAGGAACAGGTCA +
Preference number: 6 (lower is better)
Translates to: SIFRPRQTSARV*NLRPRSSRNRS
Trigger: TGACCTGTTCCTGGATGATCTTGGCCTTAAATTCAAGACCCTAGCTGAAGTTTGCCTAGGTCGAAAGATCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp AGGTATATTGTCATTGACATCCAATATACGGATCTGAACTTGAGCTaGCTGGACTGGCTTGTCTGTTATCTGCCCGTTACCATCTCTTGC +
Preference number: 6 (lower is better)
Translates to: RYIVIDIQYTDLNLS*LDWLVCYLPVTISC
Trigger: GCAAGAGATGGTAACGGGCAGATAACAGACAAGCCAGTCCAGCAAGCTCAAGTTCAGATCCGTATATTGGATGTCAATGACAATATACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 90 bp TACCACAGGTATATTGTCATTGACATCCAATATACGGATCTGAACTaGAGCTTGCTGGACTGGCTTGTCTGTTATCTGCCCGTTACCATC +
Preference number: 6 (lower is better)
Translates to: YHRYIVIDIQYTDLN*SLLDWLVCYLPVTI
Trigger: GATGGTAACGGGCAGATAACAGACAAGCCAGTCCAGCAAGCTCAAGTTCAGATCCGTATATTGGATGTCAATGACAATATACCTGTGGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 90 bp GGCGTGGCCTTGTACTTGCTCAGAATGGACTTGTGGAAAGCTGCTTaGTTAGTGACAATGATGCTCAAGTCTAGCTTCTTCATTTCTTCA +
Preference number: 6 (lower is better)
Translates to: GVALYLLRMDLWKAA*LVTMMLKSSFFISS
Trigger: TGAAGAAATGAAGAAGCTAGACTTGAGCATCATTGTCACTAACAAAGCAGCTTTCCACAAGTCCATTCTGAGCAAGTACAAGGCCACGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CCA 72 bp TCTGGAGTCCAATGCATAGCCTGTCAGCAGAAAATATaGTGTTTCTTCCCGGTCAAGAATGCTAGTGATGTT +
Preference number: 6 (lower is better)
Translates to: SGVQCIACQQKI*CFFPVKNASDV
Trigger: AACATCACTAGCATTCTTGACCGGGAAGAAACACCATATTTTCTGCTGACAGGCTATGCATTGGACTCCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 72 bp TTGGTGACCCTGGTGGAAGATGTGGTTATAGTAGAATaGGGACGATCAGATTCCTCTAGATCTAAATTGGGC +
Preference number: 6 (lower is better)
Translates to: LVTLVEDVVIVE*GRSDSSRSKLG
Trigger: GCCCAATTTAGATCTAGAGGAATCTGATCGTCCCAATTCTACTATAACCACATCTTCCACCAGGGTCACCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp ACGAATATGCCGAAAGGCGGTTCTGTAATTCCCTTCCCAGTGTACTaGTACGTGATTTTTATCCCTTTTTCTTCTGCAAGGTCAGAGTGT +
Preference number: 6 (lower is better)
Translates to: TNMPKGGSVIPFPVY*YVIFIPFSSARSEC
Trigger: ACACTCTGACCTTGCAGAAGAAAAAGGGATAAAAATCACGTACAAGTACACTGGGAAGGGAATTACAGAACCGCCTTTCGGCATATTCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 72 bp CCCCCGTGTCTTTATTTAGGTAGAACATATGACTATTaGCAGGCTCCTGAGAGACAATTCTGTAGGAGACTT +
Preference number: 6 (lower is better)
Translates to: PPCLYLGRTYDY*QAPERQFCRRL
Trigger: AAGTCTCCTACAGAATTGTCTCTCAGGAGCCTGCAAATAGTCATATGTTCTACCTAAATAAAGACACGGGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 72 bp TATATTGTCATTGACATCCAATATACGGATCTGAACTaGAGCTTGCTGGACTGGCTTGTCTGTTATCTGCCC +
Preference number: 6 (lower is better)
Translates to: YIVIDIQYTDLN*SLLDWLVCYLP
Trigger: GGGCAGATAACAGACAAGCCAGTCCAGCAAGCTCAAGTTCAGATCCGTATATTGGATGTCAATGACAATATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 72 bp TTCAACAGTGATAACGATGGTGCCAGTGATGGTTTTTaGAGGATGTTCTTTGGATATGGCCACAACCTTTGC +
Preference number: 6 (lower is better)
Translates to: FNSDNDGASDGF*RMFFGYGHNLC
Trigger: GCAAAGGTTGTGGCCATATCCAAAGAACATCCTCAAAAAACCATCACTGGCACCATCGTTATCACTGTTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 72 bp TACTTTAGCTGCTTGACCAGTGTCTTCATCAAAAACTaGAAAATTTCCAATCGACCTGCTGAGGCTGGATCT +
Preference number: 6 (lower is better)
Translates to: YFSCLTSVFIKN*KISNRPAEAGS
Trigger: AGATCCAGCCTCAGCAGGTCGATTGGAAATTTTCAAGTTTTTGATGAAGACACTGGTCAAGCAGCTAAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS CAA 90 bp TACATATGTTACTTTAGCTGCTTGACCAGTGTCTTCATCAAAAACTaGAAAATTTCCAATCGACCTGCTGAGGCTGGATCTATCCATTGC +
Preference number: 6 (lower is better)
Translates to: YICYFSCLTSVFIKN*KISNRPAEAGSIHC
Trigger: GCAATGGATAGATCCAGCCTCAGCAGGTCGATTGGAAATTTTCAAGTTTTTGATGAAGACACTGGTCAAGCAGCTAAAGTAACATATGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp AGTGTACTTGTACGTGATTTTTATCCCTTTTTCTTCTaGAAGGTCAGAGTGTATCTTGGCAATCGGGTTCTT +
Preference number: 6 (lower is better)
Translates to: SVLVRDFYPFFF*KVRVYLGNRVL
Trigger: AAGAACCCGATTGCCAAGATACACTCTGACCTTGCAGAAGAAAAAGGGATAAAAATCACGTACAAGTACACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000059787.15
ENSMUST00000120102.8
ENSMUST00000121837.2
CDS CAA 72 bp TTAATCTCTGAAGTGACGGAGTCCACAGAGACCCAGTaGTCAGTGTCTTGCACTTTTACATATGTTACTTTA +
Preference number: 6 (lower is better)
Translates to: LISEVTESTETQ*SVSCTFTYVTL
Trigger: TAAAGTAACATATGTAAAAGTGCAAGACACTGACAACTGGGTCTCTGTGGACTCCGTCACTTCAGAGATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15
CDS GCA 72 bp TTTTTGAGGATGTTCTTTGGATATGGCCACAACCTTTaGAGTGTAGGTACCATTTTGGACATATCTAGATTC +
Preference number: 6 (lower is better)
Translates to: FLRMFFGYGHNL*SVGTILDISRF
Trigger: GAATCTAGATATGTCCAAAATGGTACCTACACTGCAAAGGTTGTGGCCATATCCAAAGAACATCCTCAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059787.15