Pregenerated sensors for DSE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039497Ensembl transcript IDs: ENSMUST00000048010.9, ENSMUST00000215547.2, ENSMUST00000217051.2
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TACACCCTAGGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACCAATTAGGAAATACATaGATACATTTCCTGACCTCT | + |
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Preference number: 2 (lower is better) Translates to: YTLGTSFVCLAQGFPYPHQLGNT*IHFLTS Trigger: AGAGGTCAGGAAATGTATGCATGTATTTCCTAATTG...GTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACCTAGGGTGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| 3UTR-3UTR TCA 90 bp | TTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATCATGCATACATTTCCTaGCCTCTCGTGATCCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: LSKSHKYHSCTDKQHQTDHAYIS*PLVILR Trigger: TCTCAGGATCACGAGAGGTCAGGAAATGTATGCATG...ATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | ACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGGCAGCCAAAGGTAAGGCCATGCAGTTaGTGGGCTGGTGGTTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: TGQPAKPNISRNTRGQPKVRPCS*WAGGCA Trigger: TGCACAACCACCAGCCCACCAACTGCATGGCCTTAC...CTTTGGCTGCCCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | ACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGGCAGCCAAAGGTGGGTGGAGGAGGATaGGATTCCGTTGAATGTGCT | + |
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Preference number: 4 (lower is better) Translates to: TGQPAKPNISRNTRGQPKVGGGG*DSVECA Trigger: AGCACATTCAACGGAATCTCATCCTCCTCCACCCAC...CTTTGGCTGCCCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | TGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGGCAGCCAAAGCCGGATCAAGAAGAGTCTaGTGTAGGAGGCTGACAGTG | + |
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Preference number: 4 (lower is better) Translates to: WSASKAKHFQKHKGAAKAGSRRV*CRRLTV Trigger: CACTGTCAGCCTCCTACACCAGACTCTTCTTGATCC...GGCTTTGGCTGCCCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | GGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACTTTTTGTGTGAAGGTGCTCTGTTGTaGCTTGTCACCATCCGCACC | + |
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Preference number: 4 (lower is better) Translates to: GTSFVCLAQGFPYPHFLCEGALL*LVTIRT Trigger: GGTGCGGATGGTGACAAGTCACAACAGAGCACCTTC...ACACAAAAAGTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TACACCCTAGGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACTGTGCGAAAGCAGAATaGCCTGTGTTCTCACCTGTC | + |
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Preference number: 4 (lower is better) Translates to: YTLGTSFVCLAQGFPYPHCAKAE*PVFSPV Trigger: GACAGGTGAGAACACAGGGCATTCTGCTTTCGCACA...GTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACCTAGGGTGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | TACACCCTAGGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACGATGGCCAAAGTGGTTaGTGTCAAAGTGCCTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: YTLGTSFVCLAQGFPYPHDGQSG*CQSASE Trigger: TTCAGAGGCACTTTGACATCAACCACTTTGGCCATC...GTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACCTAGGGTGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | ACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGGCAGCCAAAGGAATGTGCTTCAGGTTaGGCATGGGGTTATATGCTC | + |
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Preference number: 4 (lower is better) Translates to: TGQPAKPNISRNTRGQPKECASG*AWGYML Trigger: GAGCATATAACCCCATGCTCAACCTGAAGCACATTC...CTTTGGCTGCCCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | GGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACTTTTTGTGTGGACAGCGGTGCTTTTaGTGGCTGAACTCTGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: GTSFVCLAQGFPYPHFLCGQRCF*WLNSGQ Trigger: TTGACCAGAGTTCAGCCATCAAAAGCACCGCTGTCC...ACACAAAAAGTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGGCAGCCAAAGCCATCCTTTTCATCTGCTaGAATCACTCTCCCCTGACA | + |
|
Preference number: 4 (lower is better) Translates to: WSASKAKHFQKHKGAAKAILFIC*NHSPLT Trigger: TGTCAGGGGAGAGTGATTGCAGCAGATGAAAAGGAT...GGCTTTGGCTGCCCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TACACCCTAGGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACTGTCCACAGGTAAGTTaGATAGGCGTGTTCACTGGT | + |
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Preference number: 4 (lower is better) Translates to: YTLGTSFVCLAQGFPYPHCPQVS*IGVFTG Trigger: ACCAGTGAACACGCCTATGCAACTTACCTGTGGACA...GTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACCTAGGGTGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | GGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACTTTTTGTGTGTCAGTGATGAAGGCTaGCACACAGCAGAGCAAACA | + |
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Preference number: 4 (lower is better) Translates to: GTSFVCLAQGFPYPHFLCVSDEG*HTAEQT Trigger: TGTTTGCTCTGCTGTGTGTCAGCCTTCATCACTGAC...ACACAAAAAGTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | TCTAATAGATACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGATGAACAGTCTTCTGTaGCCTGACCCTCCCAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: SNRYWSASKAKHFQKHKGMNSLL*PDPPRE Trigger: CTCCCTGGGAGGGTCAGGTCACAGAAGACTGTTCAT...CCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGTATCTATTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | ACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGGCAGCCAAAGCCGAGGATACATCACTaGGGCAAAGTTTGCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: TGQPAKPNISRNTRGQPKPRIHH*GKVCFF Trigger: GAAAAAGCAAACTTTGCCTCAGTGATGTATCCTCGG...CTTTGGCTGCCCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | TCTAATAGATACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGGGTCTCCATGGATGCTaGAGCTCTGGACATCCACAG | + |
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Preference number: 4 (lower is better) Translates to: SNRYWSASKAKHFQKHKGGLHGC*SSGHPQ Trigger: CTGTGGATGTCCAGAGCTTCAGCATCCATGGAGACC...CCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGTATCTATTAGA 49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TCTAATAGATACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGGTGGGCTGGTGGTTGTaGAAGTACTGGAACCCCCAT | + |
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Preference number: 4 (lower is better) Translates to: SNRYWSASKAKHFQKHKGVGWWL*KYWNPH Trigger: ATGGGGGTTCCAGTACTTGCACAACCACCAGCCCAC...CCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGTATCTATTAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TCTAATAGATACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGGTGGAAGAAACTTGCTaGTGTCTCCAGCGGGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: SNRYWSASKAKHFQKHKGVEETC*CLQRAL Trigger: GAGAGCCCGCTGGAGACAGCAGCAAGTTTCTTCCAC...CCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGTATCTATTAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | TCTAATAGATACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGCTACACGGTTCCTTCTaGTTTGGTCAGCCAGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: SNRYWSASKAKHFQKHKGLHGSF*FGQPAS Trigger: ACTGGCTGGCTGACCAAATCAGAAGGAACCGTGTAG...CCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGTATCTATTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | ATTATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACGTCTCGCTGCCGGATaGGAGCCCCATGGACCCCAT | + |
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Preference number: 4 (lower is better) Translates to: IIYRKATNTIPALTNSIKRLAAG*EPHGPH Trigger: ATGGGGTCCATGGGGCTCTCATCCGGCAGCGAGACG...TTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAAGCGTGCACCAGCGCTaGCCTTTCGATGGTGTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: YLSKSHKYHSCTDKQHQTSVHQR*PFDGVP Trigger: AGGGACACCATCGAAAGGGCAGCGCTGGTGCACGCT...TGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | TTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATCTGGCAGCCCTCAGCTaGAGCTCTGCCACATCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LSKSHKYHSCTDKQHQTDLAALS*SSATSF Trigger: GAAAGATGTGGCAGAGCTCCAGCTGAGGGCTGCCAG...ATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | GGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACTTTTTGTGTCTGGCTGCCAGGTCATaGTTATACTTTGACCATTTT | + |
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Preference number: 4 (lower is better) Translates to: GTSFVCLAQGFPYPHFLCLAARS*LYFDHF Trigger: AAAATGGTCAAAGTATAAGCATGACCTGGCAGCCAG...ACACAAAAAGTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TACACCCTAGGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACATTAACTTCAATCTGTaGGAAAATATCAGGAACCGC | + |
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Preference number: 4 (lower is better) Translates to: YTLGTSFVCLAQGFPYPHINFNL*ENIRNR Trigger: GCGGTTCCTGATATTTTCGCACAGATTGAAGTTAAT...GTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACCTAGGGTGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TACACCCTAGGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACGAACCCTCGTTTTTATaGTTCTCATATGTGACATCA | + |
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Preference number: 4 (lower is better) Translates to: YTLGTSFVCLAQGFPYPHEPSFL*FSYVTS Trigger: TGATGTCACATATGAGAAGCATAAAAACGAGGGTTC...GTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACCTAGGGTGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | TCTAATAGATACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGCATGGATGGCCAAAGTaGTTGATGTCAAAGTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SNRYWSASKAKHFQKHKGHGWPK*LMSKCL Trigger: GAGGCACTTTGACATCAACCACTTTGGCCATCCATG...CCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGTATCTATTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | TATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATGCATTGGGGGCGAAAGTaGAAGAGTTTTGGTCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: YRKATNTIPALTNSIKQMHWGRK*KSFGQG Trigger: ACCCTGACCAAAACTCTTTCACTTTCGCCCCCAATG...CATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATGATTGTGGAAGAAACTTaGTGCTGTCTCCAGCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: YRKATNTIPALTNSIKQMIVEET*CCLQRA Trigger: AGCCCGCTGGAGACAGCAGCAAGTTTCTTCCACAAT...CATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TCTAATAGATACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGACGGGCTTAAAATGCTaGAGATTCTGCTCCACGATA | + |
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Preference number: 4 (lower is better) Translates to: SNRYWSASKAKHFQKHKGTGLKC*RFCSTI Trigger: TATCGTGGAGCAGAATCTGCAGCATTTTAAGCCCGT...CCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGTATCTATTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | TTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATAAACCCACCAGGGAGTaGGCAAGTGGAACTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: LSKSHKYHSCTDKQHQTDKPTRE*ASGTSS Trigger: GGATGAAGTTCCACTTGCCCACTCCCTGGTGGGTTT...ATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | GTTCCCATTATTTATATTTTAACAGCCTGTATTGCTTGGAATTATGTGCCTCCAAGGCCATGCAGTTGGTaGGCTGGTGGTTGTGCAAGT | + |
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Preference number: 4 (lower is better) Translates to: VPIIYILTACIAWNYVPPRPCSW*AGGCAS Trigger: ACTTGCACAACCACCAGCCCACCAACTGCATGGCCT...TGGAGGCACATAATTCCAAGCAATACAGGCTGTTAAAATATAAATAATGGGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | TCTAATAGATACTGGTCAGCCAGCAAAGCCAAACATTTCCAGAAACACAAGGGGAAAGTGAAAGAGTTTTaGTCAGGGTGCTCATGTCCT | + |
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Preference number: 4 (lower is better) Translates to: SNRYWSASKAKHFQKHKGKVKEF*SGCSCP Trigger: AGGACATGAGCACCCTGACCAAAACTCTTTCACTTT...CCCCTTGTGTTTCTGGAAATGTTTGGCTTTGCTGGCTGACCAGTATCTATTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | TATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATGAAGCTAGCTGTGTTCTaGACTCGAGATAGGATCTGC | + |
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Preference number: 4 (lower is better) Translates to: YRKATNTIPALTNSIKQMKLAVF*TRDRIC Trigger: GCAGATCCTATCTCGAGTCCAGAACACAGCTAGCTT...CATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | TTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATCCAGAGACTTCTCCATaGTGCTTAGAACTTGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LSKSHKYHSCTDKQHQTDPETSP*CLELAW Trigger: CCAAGCAAGTTCTAAGCATCATGGAGAAGTCTCTGG...ATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | TATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATGCACTCCCGTTACGCATaGCAAATTTATCCAGGAACA | + |
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Preference number: 4 (lower is better) Translates to: YRKATNTIPALTNSIKQMHSRYA*QIYPGT Trigger: TGTTCCTGGATAAATTTGTCATGCGTAACGGGAGTG...CATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | AAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATGTTCATGGAGAAGTACAACATTaGGTGGCTGTCATAGTTGGC | + |
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Preference number: 4 (lower is better) Translates to: KSHKYHSCTDKQHQTDVHGEVQH*VAVIVG Trigger: GCCAACTATGACAGCCACCCAATGTTGTACTTCTCC...ATGAACATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | AAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATGTTCATACCAAAATCTGGAGGTaGAACTGGTTTCAAGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: KSHKYHSCTDKQHQTDVHTKIWR*NWFQAG Trigger: GCCAGCTTGAAACCAGTTCCACCTCCAGATTTTGGT...ATGAACATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | TTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATTGCTTCTCAAGCAGCTaGAACACGGGCTTAAAATGC | + |
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Preference number: 4 (lower is better) Translates to: LSKSHKYHSCTDKQHQTDCFSSS*NTGLKC Trigger: GCATTTTAAGCCCGTGTTCCAGCTGCTTGAGAAGCA...ATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | TTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATAAAGGAATGACCTGTTaGTTTCTGCAGGTAGTGCAC | + |
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Preference number: 4 (lower is better) Translates to: LSKSHKYHSCTDKQHQTDKGMTC*FLQVVH Trigger: GTGCACTACCTGCAGAAATCAACAGGTCATTCCTTT...ATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | CATTATAACCAATTAGGAAATACATGCATACATTTCCTGACCTCTCGTGATCCTGTTGCATTGCCAGCATaGCAAAGAAGATGGCAATGT | + |
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Preference number: 4 (lower is better) Translates to: HYNQLGNTCIHFLTSRDPVALPA*QRRWQC Trigger: ACATTGCCATCTTCTTTGTCATGCTGGCAATGCAAC...AGGATCACGAGAGGTCAGGAAATGTATGCATGTATTTCCTAATTGGTTATAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGGTATAGCTGCCGTATaGAACTCCTTCATAGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: YLSKSHKYHSCTDKQHQTGIAAV*NSFIER Trigger: TCTCTCTATGAAGGAGTTGCATACGGCAGCTATACC...TGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | TTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATATAAAGGCAAAGTGTTaGTTAAGCCATGGATGGCCA | + |
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Preference number: 4 (lower is better) Translates to: LSKSHKYHSCTDKQHQTDIKAKC*LSHGWP Trigger: TGGCCATCCATGGCTTAAGCAACACTTTGCCTTTAT...ATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | AAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATGTTCATGAGTTTTGGTCAGGGTaGTCATGTCCTGCATTAAAA | + |
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Preference number: 4 (lower is better) Translates to: KSHKYHSCTDKQHQTDVHEFWSG*SCPALK Trigger: TTTTAATGCAGGACATGAGCACCCTGACCAAAACTC...ATGAACATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | ATTATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAAATCTGCAATGACCTGTaGGAAAGCAGAATGCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: IIYRKATNTIPALTNSIKICNDL*ESRMPC Trigger: ACAGGGCATTCTGCTTTCGCACAGGTCATTGCAGAT...TTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | ATTATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAAAACACGGGCTTAAAATaGTGCAGATTCTGCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: IIYRKATNTIPALTNSIKNTGLK*CRFCST Trigger: CGTGGAGCAGAATCTGCAGCATTTTAAGCCCGTGTT...TTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | GTTCCCATTATTTATATTTTAACAGCCTGTATTGCTTGGAATTATGTGCCTCCAACTCGAGATAGGATCTaGTTCTCAAGCAGCTGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: VPIIYILTACIAWNYVPPTRDRI*FSSSWN Trigger: GTTCCAGCTGCTTGAGAAGCAGATCCTATCTCGAGT...TGGAGGCACATAATTCCAAGCAATACAGGCTGTTAAAATATAAATAATGGGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | TATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACATGCTTAAGCCATGGATaGCCAAAGTGGTTGATGTCA | + |
|
Preference number: 4 (lower is better) Translates to: YLSKSHKYHSCTDKQHQTCLSHG*PKWLMS Trigger: TGACATCAACCACTTTGGCCATCCATGGCTTAAGCA...TGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | TATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGTGTTGCTTAAGCCATaGATGGCCAAAGTGGTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: YLSKSHKYHSCTDKQHQTVLLKP*MAKVVD Trigger: ATCAACCACTTTGGCCATCCATGGCTTAAGCAACAC...TGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | ATTATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAATTAGTCAACATGGTATaGACAGCCTCTGTAAGCCGA | + |
|
Preference number: 4 (lower is better) Translates to: IIYRKATNTIPALTNSIKLVNMV*TASVSR Trigger: TCGGCTTACAGAGGCTGTGCATACCATGTTGACTAA...TTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | AAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATGTTCATAATTTTCTGATGATCTaGAATGACCTGTGCGAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: KSHKYHSCTDKQHQTDVHNFLMI*NDLCES Trigger: GCTTTCGCACAGGTCATTGCAGATCATCAGAAAATT...ATGAACATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | ATTATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACTGCCACATCTTTCCTaGAGAAGTACAACATTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: IIYRKATNTIPALTNSIKLPHLS*RSTTLG Trigger: ACCCAATGTTGTACTTCTCCAGGAAAGATGTGGCAG...TTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | CATTATAACCAATTAGGAAATACATGCATACATTTCCTGACCTCTCGTGATCCTAGTTCTCTGAAACCCTaGCAAGATGGTCCTATACAT | + |
|
Preference number: 4 (lower is better) Translates to: HYNQLGNTCIHFLTSRDPSSLKP*QDGPIH Trigger: ATGTATAGGACCATCTTGCCAGGGTTTCAGAGAACT...AGGATCACGAGAGGTCAGGAAATGTATGCATGTATTTCCTAATTGGTTATAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | ATTATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAAATCTGGAGGTGGAACTaGTTTCAAGCTGGCATCATA | + |
|
Preference number: 4 (lower is better) Translates to: IIYRKATNTIPALTNSIKIWRWN*FQAGII Trigger: TATGATGCCAGCTTGAAACCAGTTCCACCTCCAGAT...TTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | ATTATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAATGCTGCCGCTGTTGCTaGGATATAGCAAAAATTCTG | + |
|
Preference number: 4 (lower is better) Translates to: IIYRKATNTIPALTNSIKCCRCC*DIAKIL Trigger: CAGAATTTTTGCTATATCCCAGCAACAGCGGCAGCA...TTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | CATTATAACCAATTAGGAAATACATGCATACATTTCCTGACCTCTCGTGATCCTTTCGAAGATGCATGGTaGCATTCACATAATTTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: HYNQLGNTCIHFLTSRDPFEDAW*HSHNLS Trigger: GGACAAATTATGTGAATGTCACCATGCATCTTCGAA...AGGATCACGAGAGGTCAGGAAATGTATGCATGTATTTCCTAATTGGTTATAATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR GCA 90 bp | GTTCCCATTATTTATATTTTAACAGCCTGTATTGCTTGGAATTATGTGCCTCCAAACAATGTCATATATTaGACGCCCTCCAAGTTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: VPIIYILTACIAWNYVPPNNVIY*TPSKFS Trigger: GGAAAACTTGGAGGGCGTGCAATATATGACATTGTT...TGGAGGCACATAATTCCAAGCAATACAGGCTGTTAAAATATAAATAATGGGAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CCA 90 bp | ATTATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAAGAACTGGTTTCAAGCTaGCATCATACCAGAGAAATT | + |
|
Preference number: 4 (lower is better) Translates to: IIYRKATNTIPALTNSIKELVSS*HHTREI Trigger: AATTTCTCTGGTATGATGCCAGCTTGAAACCAGTTC...TTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR TCA 90 bp | GTTCCCATTATTTATATTTTAACAGCCTGTATTGCTTGGAATTATGTGCCTCCAAAACCAGTTGTAATTTaGATCTGCAATGGCTACAGT | + |
|
Preference number: 4 (lower is better) Translates to: VPIIYILTACIAWNYVPPKPVVI*ICNGYS Trigger: ACTGTAGCCATTGCAGATTCAAATTACAACTGGTTT...TGGAGGCACATAATTCCAAGCAATACAGGCTGTTAAAATATAAATAATGGGAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS GCA 90 bp | CAAGGGGTTAGTCAACATGGTATGCACAGCCTCTGTAAGCCGAGCTaGAATGTGCTCATGGGAGCTGGCAGCCCTCAGCTGGAGCTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: QGVSQHGMHSLCKPS*NVLMGAGSPQLELC Trigger: GCAGAGCTCCAGCTGAGGGCTGCCAGCTCCCATGAGCACATTGCAGCTCGGCTTACAGAGGCTGTGCATACCATGTTGACTAACCCCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048010.9 ENSMUST00000215547.2 |
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| CDS GCA 90 bp | TTAGTCAACATGGTATGCACAGCCTCTGTAAGCCGAGCTGCAATGTaGTCATGGGAGCTGGCAGCCCTCAGCTGGAGCTCTGCCACATCT | + |
|
Preference number: 5 (lower is better) Translates to: LVNMVCTASVSRAAM*SWELAALSWSSATS Trigger: AGATGTGGCAGAGCTCCAGCTGAGGGCTGCCAGCTCCCATGAGCACATTGCAGCTCGGCTTACAGAGGCTGTGCATACCATGTTGACTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048010.9 ENSMUST00000215547.2 |
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| CDS GCA 90 bp | CCCGCCTTTCGGCTTTTCTTCGACTTGCCTCGCTGCTGCCGCTGTTaGTGGGATATAGCAAAAATTCTGTCAATGGCTTCCTCTGTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: PAFRLFFDLPRCCRC*WDIAKILSMASSVC Trigger: ACAGACAGAGGAAGCCATTGACAGAATTTTTGCTATATCCCAGCAACAGCGGCAGCAGCGAGGCAAGTCGAAGAAAAGCCGAAAGGCGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS CCA 90 bp | GCCTTTCGGCTTTTCTTCGACTTGCCTCGCTGCTGCCGCTGTTGCTaGGATATAGCAAAAATTCTGTCAATGGCTTCCTCTGTCTGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: AFRLFFDLPRCCRCC*DIAKILSMASSVCL Trigger: GAGACAGACAGAGGAAGCCATTGACAGAATTTTTGCTATATCCCAGCAACAGCGGCAGCAGCGAGGCAAGTCGAAGAAAAGCCGAAAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CAA 90 bp | GGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACTTTTTGTGTCGCATAAAGACACCTTaGGCCATGGAGGCTCTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GTSFVCLAQGFPYPHFLCRIKTP*AMEALS Trigger: GCTCAGAGCCTCCATGGCCAAAGGTGTCTTTATGCG...ACACAAAAAGTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CAA 90 bp | TACACCCTAGGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACCATAAAGGCAAAGTGTaGCTTAAGCCATGGATGGCC | + |
|
Preference number: 5 (lower is better) Translates to: YTLGTSFVCLAQGFPYPHHKGKV*LKPWMA Trigger: GGCCATCCATGGCTTAAGCAACACTTTGCCTTTATG...GTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACCTAGGGTGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CAA 90 bp | TACACCCTAGGTACATCCTTTGTGTGTCTAGCTCAGGGCTTTCCATACCCCCACGAGGATGAGATTCCGTaGAATGTGCTTCAGGTTGAG | + |
|
Preference number: 5 (lower is better) Translates to: YTLGTSFVCLAQGFPYPHEDEIP*NVLQVE Trigger: CTCAACCTGAAGCACATTCAACGGAATCTCATCCTC...GTGGGGGTATGGAAAGCCCTGAGCTAGACACACAAAGGATGTACCTAGGGTGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CAA 90 bp | TTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATCGGCTTTTCTTCGACTaGCCTCGCTGCTGCCGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: LSKSHKYHSCTDKQHQTDRLFFD*PRCCRC Trigger: ACAGCGGCAGCAGCGAGGCAAGTCGAAGAAAAGCCG...ATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CAA 90 bp | TATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATGTCACTGAGGCAAAGTTaGCTTTTTCACTATAACCGG | + |
|
Preference number: 5 (lower is better) Translates to: YRKATNTIPALTNSIKQMSLRQS*LFHYNR Trigger: CCGGTTATAGTGAAAAAGCAAACTTTGCCTCAGTGA...CATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CAA 90 bp | GTTCCCATTATTTATATTTTAACAGCCTGTATTGCTTGGAATTATGTGCCTCCATGGAGAAGTACAACATaGGGTGGCTGTCATAGTTGG | + |
|
Preference number: 5 (lower is better) Translates to: VPIIYILTACIAWNYVPPWRSTT*GGCHSW Trigger: CCAACTATGACAGCCACCCAATGTTGTACTTCTCCA...TGGAGGCACATAATTCCAAGCAATACAGGCTGTTAAAATATAAATAATGGGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CAA 90 bp | GTTCCCATTATTTATATTTTAACAGCCTGTATTGCTTGGAATTATGTGCCTCCACTCCTGAAGGTACCCTaGGTTCATCAGAATGAGACT | + |
|
Preference number: 5 (lower is better) Translates to: VPIIYILTACIAWNYVPPLLKVP*VHQNET Trigger: AGTCTCATTCTGATGAACCAAGGGTACCTTCAGGAG...TGGAGGCACATAATTCCAAGCAATACAGGCTGTTAAAATATAAATAATGGGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CAA 90 bp | AAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGATGTTCATCTGGAAATAAGTCAGTaGCATTGCCAGCATGACAAA | + |
|
Preference number: 5 (lower is better) Translates to: KSHKYHSCTDKQHQTDVHLEISQ*HCQHDK Trigger: TTTGTCATGCTGGCAATGCAACTGACTTATTTCCAG...ATGAACATCTGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CAA 90 bp | TATTTATCGAAAAGCCACAAATACCATTCCTGCACTGACAAACAGCATCAAACAGAACAATGTCATATATaGCACGCCCTCCAAGTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: YLSKSHKYHSCTDKQHQTEQCHI*HALQVF Trigger: GAAAACTTGGAGGGCGTGCAATATATGACATTGTTC...TGTTTGATGCTGTTTGTCAGTGCAGGAATGGTATTTGTGGCTTTTCGATAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS-3UTR CAA 90 bp | CATTATAACCAATTAGGAAATACATGCATACATTTCCTGACCTCTCGTGATCCTAAGAAGATGGCAATGTaGAGGATCAAGAAGAGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: HYNQLGNTCIHFLTSRDPKKMAM*RIKKSL Trigger: CAGACTCTTCTTGATCCTCAACATTGCCATCTTCTT...AGGATCACGAGAGGTCAGGAAATGTATGCATGTATTTCCTAATTGGTTATAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS GCA 72 bp | GTGCTCATGGGAGCTGGCAGCCCTCAGCTGGAGCTCTaGCACATCTTTCCTGGAGAAGTACAACATTGGGTG | + |
|
Preference number: 6 (lower is better) Translates to: VLMGAGSPQLEL*HIFPGEVQHWV Trigger: CACCCAATGTTGTACTTCTCCAGGAAAGATGTGGCAGAGCTCCAGCTGAGGGCTGCCAGCTCCCATGAGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048010.9 ENSMUST00000215547.2 |
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| CDS GCA 72 bp | AGTCAACATGGTATGCACAGCCTCTGTAAGCCGAGCTaGAATGTGCTCATGGGAGCTGGCAGCCCTCAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: SQHGMHSLCKPS*NVLMGAGSPQL Trigger: CAGCTGAGGGCTGCCAGCTCCCATGAGCACATTGCAGCTCGGCTTACAGAGGCTGTGCATACCATGTTGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048010.9 ENSMUST00000215547.2 |
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| CDS CAA 72 bp | GGCCCATACAGGGCCTCAGTAATGAACGGCACACCATaGGGGGCGAAAGTGAAAGAGTTTTGGTCAGGGTGC | + |
|
Preference number: 6 (lower is better) Translates to: GPYRASVMNGTP*GAKVKEFWSGC Trigger: GCACCCTGACCAAAACTCTTTCACTTTCGCCCCCAATGGTGTGCCGTTCATTACTGAGGCCCTGTATGGGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048010.9 ENSMUST00000217051.2 |
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| CDS CAA 90 bp | AGAGTCTGGTGTAGGAGGCTGACAGTGAAGGTGCTCTGTTGTGACTaGTCACCATCCGCACCTGTCCAAAGCCACCTTTCACGGAACCCT | + |
|
Preference number: 6 (lower is better) Translates to: RVWCRRLTVKVLCCD*SPSAPVQSHLSRNP Trigger: AGGGTTCCGTGAAAGGTGGCTTTGGACAGGTGCGGATGGTGACAAGTCACAACAGAGCACCTTCACTGTCAGCCTCCTACACCAGACTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS CAA 72 bp | ATCAGAATGAGACTTCCAGTGAGTAAGGCCATGCAGTaGGTGGGCTGGTGGTTGTGCAAGTACTGGAACCCC | + |
|
Preference number: 6 (lower is better) Translates to: IRMRLPVSKAMQ*VGWWLCKYWNP Trigger: GGGGTTCCAGTACTTGCACAACCACCAGCCCACCAACTGCATGGCCTTACTCACTGGAAGTCTCATTCTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048010.9 ENSMUST00000217051.2 |
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| CDS CAA 72 bp | TGTAGGAGGCTGACAGTGAAGGTGCTCTGTTGTGACTaGTCACCATCCGCACCTGTCCAAAGCCACCTTTCA | + |
|
Preference number: 6 (lower is better) Translates to: CRRLTVKVLCCD*SPSAPVQSHLS Trigger: TGAAAGGTGGCTTTGGACAGGTGCGGATGGTGACAAGTCACAACAGAGCACCTTCACTGTCAGCCTCCTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS CAA 90 bp | CCTTGGTTCATCAGAATGAGACTTCCAGTGAGTAAGGCCATGCAGTaGGTGGGCTGGTGGTTGTGCAAGTACTGGAACCCCCATCCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: PWFIRMRLPVSKAMQ*VGWWLCKYWNPHPL Trigger: AAGAGGATGGGGGTTCCAGTACTTGCACAACCACCAGCCCACCAACTGCATGGCCTTACTCACTGGAAGTCTCATTCTGATGAACCAAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048010.9 ENSMUST00000217051.2 |
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| CDS CCA 72 bp | CTTTTCTTCGACTTGCCTCGCTGCTGCCGCTGTTGCTaGGATATAGCAAAAATTCTGTCAATGGCTTCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LFFDLPRCCRCC*DIAKILSMASS Trigger: AGAGGAAGCCATTGACAGAATTTTTGCTATATCCCAGCAACAGCGGCAGCAGCGAGGCAAGTCGAAGAAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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| CDS CCA 72 bp | ATGCAATGTTGGGGTACCAAAATCTGGAGGTGGAACTaGTTTCAAGCTGGCATCATACCAGAGAAATTCGGT | + |
|
Preference number: 6 (lower is better) Translates to: MQCWGTKIWRWN*FQAGIIPEKFG Trigger: ACCGAATTTCTCTGGTATGATGCCAGCTTGAAACCAGTTCCACCTCCAGATTTTGGTACCCCAACATTGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048010.9 ENSMUST00000217051.2 |
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| CDS CAA 72 bp | AGGGATAACCCCGAGGATACATCACTGAGGCAAAGTTaGCTTTTTCACTATAACCGGTATCATCCATCCAGT | + |
|
Preference number: 6 (lower is better) Translates to: RDNPEDTSLRQS*LFHYNRYHPSS Trigger: ACTGGATGGATGATACCGGTTATAGTGAAAAAGCAAACTTTGCCTCAGTGATGTATCCTCGGGGTTATCCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048010.9 |
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