Pregenerated sensors for DSCC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022422Ensembl transcript IDs: ENSMUST00000023059.13, ENSMUST00000110231.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCAGCAGGCAGAAGTCGCCGGTGGCCGCGCCGCCGGTCCCGGAGCTaGAGCTCAGGCAGTGCACCGTGGGCAGCAGCTCGGTGGCGTTCA | + |
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Preference number: 5 (lower is better) Translates to: PAGRSRRWPRRRSRS*SSGSAPWAAARWRS Trigger: TGAACGCCACCGAGCTGCTGCCCACGGTGCACTGCCTGAGCTTCAGCTCCGGGACCGGCGGCGCGGCCACCGGCGACTTCTGCCTGCTGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 90 bp | TCGCCGGTGGCCGCGCCGCCGGTCCCGGAGCTGAAGCTCAGGCAGTaGACCGTGGGCAGCAGCTCGGTGGCGTTCAGCTTGGCAACCTGC | + |
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Preference number: 5 (lower is better) Translates to: SPVAAPPVPELKLRQ*TVGSSSVAFSLATC Trigger: GCAGGTTGCCAAGCTGAACGCCACCGAGCTGCTGCCCACGGTGCACTGCCTGAGCTTCAGCTCCGGGACCGGCGGCGCGGCCACCGGCGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 90 bp | CAGTGCACCGTGGGCAGCAGCTCGGTGGCGTTCAGCTTGGCAACCTaGAGCGTCGCGTCCACTTCCTCGCGGGTCCTCCGGGAAGCGCTC | + |
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Preference number: 5 (lower is better) Translates to: QCTVGSSSVAFSLAT*SVASTSSRVLREAL Trigger: GAGCGCTTCCCGGAGGACCCGCGAGGAAGTGGACGCGACGCTGCAGGTTGCCAAGCTGAACGCCACCGAGCTGCTGCCCACGGTGCACTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS CCA 90 bp | AGCTCAGGCAGTGCACCGTGGGCAGCAGCTCGGTGGCGTTCAGCTTaGCAACCTGCAGCGTCGCGTCCACTTCCTCGCGGGTCCTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: SSGSAPWAAARWRSA*QPAASRPLPRGSSG Trigger: CCCGGAGGACCCGCGAGGAAGTGGACGCGACGCTGCAGGTTGCCAAGCTGAACGCCACCGAGCTGCTGCCCACGGTGCACTGCCTGAGCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 90 bp | TCCTCTAATCACAAAGCTGTCCCCGGCCTCCAGCTGCTGGCACAGTaGTGGTTCCAGCTCCAGCAGGCAGAAGTCGCCGGTGGCCGCGCC | + |
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Preference number: 5 (lower is better) Translates to: SSNHKAVPGLQLLAQ*WFQLQQAEVAGGRA Trigger: GGCGCGGCCACCGGCGACTTCTGCCTGCTGGAGCTGGAACCAGCACTGTGCCAGCAGCTGGAGGCCGGGGACAGCTTTGTGATTAGAGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 90 bp | ATGCCCTCTTCTGACCTGTGCAGGCAGCCTGTGCACACGCATACATaGAGGCAAAAAGTTCTGGCTCCAAAGGTCCAAGCTCCTGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: MPSSDLCRQPVHTHT*RQKVLAPKVQAPAG Trigger: GCCTGCAGGAGCTTGGACCTTTGGAGCCAGAACTTTTTGCCTGCATGTATGCGTGTGCACAGGCTGCCTGCACAGGTCAGAAGAGGGCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110231.2 |
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| CDS TCA 90 bp | GAACCTTCAGTTAACTCCAGGTCCAGGAGAGCTGATGCCCTCTTCTaGCCTGTGCAGGCAGCCTGTGCACACGCATACATGCAGGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: EPSVNSRSRRADALF*PVQAACAHAYMQAK Trigger: TTTTGCCTGCATGTATGCGTGTGCACAGGCTGCCTGCACAGGTCAGAAGAGGGCATCAGCTCTCCTGGACCTGGAGTTAACTGAAGGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110231.2 |
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| CDS GCA 90 bp | CGTCATTCCCTCGGGAACACTCTGCTGCCACACTTCCTGAAACTCTaGAAGATTAAACTTCACGGCATTCTGCAGCAGCATCTCCGCGGT | + |
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Preference number: 5 (lower is better) Translates to: RHSLGNTLLPHFLKL*KIKLHGILQQHLRG Trigger: ACCGCGGAGATGCTGCTGCAGAATGCCGTGAAGTTTAATCTTGCAGAGTTTCAGGAAGTGTGGCAGCAGAGTGTTCCCGAGGGAATGACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS TCA 90 bp | AGCCGAGTCGTCATTCCCTCGGGAACACTCTGCTGCCACACTTCCTaGAACTCTGCAAGATTAAACTTCACGGCATTCTGCAGCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: SRVVIPSGTLCCHTS*NSARLNFTAFCSSI Trigger: GATGCTGCTGCAGAATGCCGTGAAGTTTAATCTTGCAGAGTTTCAGGAAGTGTGGCAGCAGAGTGTTCCCGAGGGAATGACGACTCGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 90 bp | GCATACATGCAGGCAAAAAGTTCTGGCTCCAAAGGTCCAAGCTCCTaGAGGCACACAGTCAAGGGGACTCTATCCAAAGACCAGGATTCA | + |
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Preference number: 5 (lower is better) Translates to: AYMQAKSSGSKGPSS*RHTVKGTLSKDQDS Trigger: TGAATCCTGGTCTTTGGATAGAGTCCCCTTGACTGTGTGCCTGCAGGAGCTTGGACCTTTGGAGCCAGAACTTTTTGCCTGCATGTATGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110231.2 |
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| CDS CCA 90 bp | CGTGTGAACGATGGCACTTGGTGTTTCCTCCTCCTTCAGCTGGTCTaGAGTTTTGCATCCAGGGATGAAAAGCAGCATGTTGGATGTGTC | + |
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Preference number: 5 (lower is better) Translates to: RVNDGTWCFLLLQLV*SFASRDEKQHVGCV Trigger: GACACATCCAACATGCTGCTTTTCATCCCTGGATGCAAAACTCCAGACCAGCTGAAGGAGGAGGAAACACCAAGTGCCATCGTTCACACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 90 bp | AGACAGTGTTCAATCATTTCCTCTGGCTCCAAAGGTCCAAGCTCCTaGAGGCACACAGTCAAGGGGACTCTATCCAAAGACCAGGATTCA | + |
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Preference number: 5 (lower is better) Translates to: RQCSIISSGSKGPSS*RHTVKGTLSKDQDS Trigger: TGAATCCTGGTCTTTGGATAGAGTCCCCTTGACTGTGTGCCTGCAGGAGCTTGGACCTTTGGAGCCAGAGGAAATGATTGAACACTGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023059.13 |
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| CDS CCA 90 bp | GTATCTCTTTCCGTAGCATTTAAGACAGTGTTCAATCATTTCCTCTaGCTCCAAAGGTCCAAGCTCCTGCAGGCACACAGTCAAGGGGAC | + |
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Preference number: 5 (lower is better) Translates to: VSLSVAFKTVFNHFL*LQRSKLLQAHSQGD Trigger: GTCCCCTTGACTGTGTGCCTGCAGGAGCTTGGACCTTTGGAGCCAGAGGAAATGATTGAACACTGTCTTAAATGCTACGGAAAGAGATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023059.13 |
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| CDS CCA 90 bp | ATAATTATTAGAGAAGCCAAAGATCTCCGTGTGAACGATGGCACTTaGTGTTTCCTCCTCCTTCAGCTGGTCTGGAGTTTTGCATCCAGG | + |
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Preference number: 5 (lower is better) Translates to: IIIREAKDLRVNDGT*CFLLLQLVWSFASR Trigger: CCTGGATGCAAAACTCCAGACCAGCTGAAGGAGGAGGAAACACCAAGTGCCATCGTTCACACGGAGATCTTTGGCTTCTCTAATAATTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 90 bp | TGCATTGAGGAGCGAGAATATTTAGTAAGCAACGCACCTATAGTTTaGTTCTCTCCGCACAAATCTTGGATATATGGAGTGATGTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: CIEEREYLVSNAPIV*FSPHKSWIYGVMSS Trigger: GGAAGACATCACTCCATATATCCAAGATTTGTGCGGAGAGAAGCAAACTATAGGTGCGTTGCTTACTAAATATTCTCGCTCCTCAATGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS TCA 90 bp | AGAAATGAGTCTCCTGGAATTATAAACTTTAATGCCATTTTGCATTaGGGAGCGAGAATATTTAGTAAGCAACGCACCTATAGTTTGCTT | + |
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Preference number: 5 (lower is better) Translates to: RNESPGIINFNAILH*GARIFSKQRTYSLL Trigger: AAGCAAACTATAGGTGCGTTGCTTACTAAATATTCTCGCTCCTCAATGCAAAATGGCATTAAAGTTTATAATTCCAGGAGACTCATTTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 72 bp | GTGGGCAGCAGCTCGGTGGCGTTCAGCTTGGCAACCTaGAGCGTCGCGTCCACTTCCTCGCGGGTCCTCCGG | + |
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Preference number: 6 (lower is better) Translates to: VGSSSVAFSLAT*SVASTSSRVLR Trigger: CCGGAGGACCCGCGAGGAAGTGGACGCGACGCTGCAGGTTGCCAAGCTGAACGCCACCGAGCTGCTGCCCAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS CAA 90 bp | AAGCTCAGGCAGTGCACCGTGGGCAGCAGCTCGGTGGCGTTCAGCTaGGCAACCTGCAGCGTCGCGTCCACTTCCTCGCGGGTCCTCCGG | + |
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Preference number: 6 (lower is better) Translates to: KLRQCTVGSSSVAFS*ATCSVASTSSRVLR Trigger: CCGGAGGACCCGCGAGGAAGTGGACGCGACGCTGCAGGTTGCCAAGCTGAACGCCACCGAGCTGCTGCCCACGGTGCACTGCCTGAGCTT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS CCA 72 bp | AGTGCACCGTGGGCAGCAGCTCGGTGGCGTTCAGCTTaGCAACCTGCAGCGTCGCGTCCACTTCCTCGCGGG | + |
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Preference number: 6 (lower is better) Translates to: SAPWAAARWRSA*QPAASRPLPRG Trigger: CCCGCGAGGAAGTGGACGCGACGCTGCAGGTTGCCAAGCTGAACGCCACCGAGCTGCTGCCCACGGTGCACT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS CAA 72 bp | CAGTGCACCGTGGGCAGCAGCTCGGTGGCGTTCAGCTaGGCAACCTGCAGCGTCGCGTCCACTTCCTCGCGG | + |
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Preference number: 6 (lower is better) Translates to: QCTVGSSSVAFS*ATCSVASTSSR Trigger: CCGCGAGGAAGTGGACGCGACGCTGCAGGTTGCCAAGCTGAACGCCACCGAGCTGCTGCCCACGGTGCACTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 72 bp | CACAAAGCTGTCCCCGGCCTCCAGCTGCTGGCACAGTaGTGGTTCCAGCTCCAGCAGGCAGAAGTCGCCGGT | + |
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Preference number: 6 (lower is better) Translates to: HKAVPGLQLLAQ*WFQLQQAEVAG Trigger: ACCGGCGACTTCTGCCTGCTGGAGCTGGAACCAGCACTGTGCCAGCAGCTGGAGGCCGGGGACAGCTTTGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 72 bp | TCTCCTCTAATCACAAAGCTGTCCCCGGCCTCCAGCTaGTGGCACAGTGCTGGTTCCAGCTCCAGCAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: SPLITKLSPASS*WHSAGSSSSRQ Trigger: CTGCCTGCTGGAGCTGGAACCAGCACTGTGCCAGCAGCTGGAGGCCGGGGACAGCTTTGTGATTAGAGGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 72 bp | CCAGGTCCAGGAGAGCTGATGCCCTCTTCTGACCTGTaGAGGCAGCCTGTGCACACGCATACATGCAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: PGPGELMPSSDL*RQPVHTHTCRQ Trigger: TTGCCTGCATGTATGCGTGTGCACAGGCTGCCTGCACAGGTCAGAAGAGGGCATCAGCTCTCCTGGACCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110231.2 |
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| CDS TCA 72 bp | GTTAACTCCAGGTCCAGGAGAGCTGATGCCCTCTTCTaGCCTGTGCAGGCAGCCTGTGCACACGCATACATG | + |
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Preference number: 6 (lower is better) Translates to: VNSRSRRADALF*PVQAACAHAYM Trigger: CATGTATGCGTGTGCACAGGCTGCCTGCACAGGTCAGAAGAGGGCATCAGCTCTCCTGGACCTGGAGTTAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110231.2 |
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| CDS CCA 72 bp | AGCCTGTGCACACGCATACATGCAGGCAAAAAGTTCTaGCTCCAAAGGTCCAAGCTCCTGCAGGCACACAGT | + |
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Preference number: 6 (lower is better) Translates to: SLCTRIHAGKKF*LQRSKLLQAHS Trigger: ACTGTGTGCCTGCAGGAGCTTGGACCTTTGGAGCCAGAACTTTTTGCCTGCATGTATGCGTGTGCACAGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110231.2 |
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| CDS GCA 72 bp | CAGGCAAAAAGTTCTGGCTCCAAAGGTCCAAGCTCCTaGAGGCACACAGTCAAGGGGACTCTATCCAAAGAC | + |
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Preference number: 6 (lower is better) Translates to: QAKSSGSKGPSS*RHTVKGTLSKD Trigger: GTCTTTGGATAGAGTCCCCTTGACTGTGTGCCTGCAGGAGCTTGGACCTTTGGAGCCAGAACTTTTTGCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110231.2 |
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| CDS GCA 72 bp | TCAATCATTTCCTCTGGCTCCAAAGGTCCAAGCTCCTaGAGGCACACAGTCAAGGGGACTCTATCCAAAGAC | + |
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Preference number: 6 (lower is better) Translates to: SIISSGSKGPSS*RHTVKGTLSKD Trigger: GTCTTTGGATAGAGTCCCCTTGACTGTGTGCCTGCAGGAGCTTGGACCTTTGGAGCCAGAGGAAATGATTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023059.13 |
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| CDS CAA 90 bp | ACGATGGCACTTGGTGTTTCCTCCTCCTTCAGCTGGTCTGGAGTTTaGCATCCAGGGATGAAAAGCAGCATGTTGGATGTGTCTGCTATC | + |
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Preference number: 6 (lower is better) Translates to: TMALGVSSSFSWSGV*HPGMKSSMLDVSAI Trigger: GATAGCAGACACATCCAACATGCTGCTTTTCATCCCTGGATGCAAAACTCCAGACCAGCTGAAGGAGGAGGAAACACCAAGTGCCATCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS TCA 72 bp | GTCATTCCCTCGGGAACACTCTGCTGCCACACTTCCTaGAACTCTGCAAGATTAAACTTCACGGCATTCTGC | + |
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Preference number: 6 (lower is better) Translates to: VIPSGTLCCHTS*NSARLNFTAFC Trigger: GCAGAATGCCGTGAAGTTTAATCTTGCAGAGTTTCAGGAAGTGTGGCAGCAGAGTGTTCCCGAGGGAATGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 72 bp | CTCGGGAACACTCTGCTGCCACACTTCCTGAAACTCTaGAAGATTAAACTTCACGGCATTCTGCAGCAGCAT | + |
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Preference number: 6 (lower is better) Translates to: LGNTLLPHFLKL*KIKLHGILQQH Trigger: ATGCTGCTGCAGAATGCCGTGAAGTTTAATCTTGCAGAGTTTCAGGAAGTGTGGCAGCAGAGTGTTCCCGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS CCA 72 bp | GATGGCACTTGGTGTTTCCTCCTCCTTCAGCTGGTCTaGAGTTTTGCATCCAGGGATGAAAAGCAGCATGTT | + |
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Preference number: 6 (lower is better) Translates to: DGTWCFLLLQLV*SFASRDEKQHV Trigger: AACATGCTGCTTTTCATCCCTGGATGCAAAACTCCAGACCAGCTGAAGGAGGAGGAAACACCAAGTGCCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS CCA 72 bp | AGAGAAGCCAAAGATCTCCGTGTGAACGATGGCACTTaGTGTTTCCTCCTCCTTCAGCTGGTCTGGAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: REAKDLRVNDGT*CFLLLQLVWSF Trigger: AAAACTCCAGACCAGCTGAAGGAGGAGGAAACACCAAGTGCCATCGTTCACACGGAGATCTTTGGCTTCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS CAA 72 bp | CTTGGTGTTTCCTCCTCCTTCAGCTGGTCTGGAGTTTaGCATCCAGGGATGAAAAGCAGCATGTTGGATGTG | + |
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Preference number: 6 (lower is better) Translates to: LGVSSSFSWSGV*HPGMKSSMLDV Trigger: CACATCCAACATGCTGCTTTTCATCCCTGGATGCAAAACTCCAGACCAGCTGAAGGAGGAGGAAACACCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS CCA 72 bp | TCCGTAGCATTTAAGACAGTGTTCAATCATTTCCTCTaGCTCCAAAGGTCCAAGCTCCTGCAGGCACACAGT | + |
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Preference number: 6 (lower is better) Translates to: SVAFKTVFNHFL*LQRSKLLQAHS Trigger: ACTGTGTGCCTGCAGGAGCTTGGACCTTTGGAGCCAGAGGAAATGATTGAACACTGTCTTAAATGCTACGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023059.13 |
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| CDS GCA 72 bp | GCATCCAGGGATGAAAAGCAGCATGTTGGATGTGTCTaGTATCTTCAGGTCGTAGGTTTTGTCTTTACTGCA | + |
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Preference number: 6 (lower is better) Translates to: ASRDEKQHVGCV*YLQVVGFVFTA Trigger: TGCAGTAAAGACAAAACCTACGACCTGAAGATAGCAGACACATCCAACATGCTGCTTTTCATCCCTGGATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS GCA 72 bp | GAGCGAGAATATTTAGTAAGCAACGCACCTATAGTTTaGTTCTCTCCGCACAAATCTTGGATATATGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: EREYLVSNAPIV*FSPHKSWIYGV Trigger: CACTCCATATATCCAAGATTTGTGCGGAGAGAAGCAAACTATAGGTGCGTTGCTTACTAAATATTCTCGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS CAA 72 bp | GGAGCGAGAATATTTAGTAAGCAACGCACCTATAGTTaGCTTCTCTCCGCACAAATCTTGGATATATGGAGT | + |
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Preference number: 6 (lower is better) Translates to: GARIFSKQRTYS*LLSAQILDIWS Trigger: ACTCCATATATCCAAGATTTGTGCGGAGAGAAGCAAACTATAGGTGCGTTGCTTACTAAATATTCTCGCTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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| CDS CAA 90 bp | AGACTATTAAAACGATCCTGTGTTCCCTCAGGCAAATCATCTACTTaGAGCAAAAATATGATTTCTGGTCTTGAGTTTCTGTCAACCAGT | + |
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Preference number: 6 (lower is better) Translates to: RLLKRSCVPSGKSST*SKNMISGLEFLSTS Trigger: ACTGGTTGACAGAAACTCAAGACCAGAAATCATATTTTTGCTCAAAGTAGATGATTTGCCTGAGGGAACACAGGATCGTTTTAATAGTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023059.13 ENSMUST00000110231.2 |
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