RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DPT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026574

Ensembl transcript IDs: ENSMUST00000027861.6

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGGGTGTGTCTCAAGCTGCTGATAACCCAAGATCTCTTCTCCTCTaGCCACTCTTGTCTCCCCAGGTTCCCAATGTGAATCTCATTCAC +
Preference number: 1 (lower is better)
Translates to: LGVSQAADNPRSLLL*PLLSPQVPNVNLIH
Trigger: GTGAATGAGATTCACATTGGGAACCTGGGGAGACAAGAGTGGTCAGAGGAGAAGAGATCTTGGGTTATCAGCAGCTTGAGACACACCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR GCA 90 bp CGCACAGGTTTTCCTGGCCCTCATATTCATTCTCACTGTTGGGTCTaGTGGTGTATATCTTTGAATAGAGGACGTTCTTTCTGTCTAAAG +
Preference number: 1 (lower is better)
Translates to: RTGFPGPHIHSHCWV*WCISLNRGRSFCLK
Trigger: CTTTAGACAGAAAGAACGTCCTCTATTCAAAGATATACACCAGCAGACCCAACAGTGAGAATGAATATGAGGGCCAGGAAAACCTGTGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CCA 90 bp CTGATTCGCACAGGTTTTCCTGGCCCTCATATTCATTCTCACTGTTaGGTCTGCTGGTGTATATCTTTGAATAGAGGACGTTCTTTCTGT +
Preference number: 1 (lower is better)
Translates to: LIRTGFPGPHIHSHC*VCWCISLNRGRSFC
Trigger: ACAGAAAGAACGTCCTCTATTCAAAGATATACACCAGCAGACCCAACAGTGAGAATGAATATGAGGGCCAGGAAAACCTGTGCGAATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CCA 90 bp AAGGGAGAATTATCCTTCAGGACCAATCCAGAGATGGCGTCCCTATaGCTTCTAGGGATATTACAGTCTTCATATGAATACTGGGTGTGT +
Preference number: 1 (lower is better)
Translates to: KGELSFRTNPEMASL*LLGILQSSYEYWVC
Trigger: ACACACCCAGTATTCATATGAAGACTGTAATATCCCTAGAAGCCATAGGGACGCCATCTCTGGATTGGTCCTGAAGGATAATTCTCCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CCA 90 bp GAGATATTACAGTGTCATCTCTGCAGAATACACTTTCAAGTGCCATaGGAAAGGGAGAATTATCCTTCAGGACCAATCCAGAGATGGCGT +
Preference number: 1 (lower is better)
Translates to: EILQCHLCRIHFQVP*ERENYPSGPIQRWR
Trigger: ACGCCATCTCTGGATTGGTCCTGAAGGATAATTCTCCCTTTCCCATGGCACTTGAAAGTGTATTCTGCAGAGATGACACTGTAATATCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR GCA 90 bp AGACAGAGATATTACAGTGTCATCTCTGCAGAATACACTTTCAAGTaGCATGGGAAAGGGAGAATTATCCTTCAGGACCAATCCAGAGAT +
Preference number: 1 (lower is better)
Translates to: RQRYYSVISAEYTFK*HGKGRIILQDQSRD
Trigger: ATCTCTGGATTGGTCCTGAAGGATAATTCTCCCTTTCCCATGGCACTTGAAAGTGTATTCTGCAGAGATGACACTGTAATATCTCTGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CCA 90 bp ACAGGTTTTCCTGGCCCTCATATTCATTCTCACTGTTGGGTCTGCTaGTGTATATCTTTGAATAGAGGACGTTCTTTCTGTCTAAAGTCT +
Preference number: 1 (lower is better)
Translates to: TGFPGPHIHSHCWVC*CISLNRGRSFCLKS
Trigger: AGACTTTAGACAGAAAGAACGTCCTCTATTCAAAGATATACACCAGCAGACCCAACAGTGAGAATGAATATGAGGGCCAGGAAAACCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR GCA 90 bp AGAAGGTACAAATGGCTAGAGACAGAGATATTACAGTGTCATCTCTaGAGAATACACTTTCAAGTGCCATGGGAAAGGGAGAATTATCCT +
Preference number: 1 (lower is better)
Translates to: RRYKWLETEILQCHL*RIHFQVPWERENYP
Trigger: AGGATAATTCTCCCTTTCCCATGGCACTTGAAAGTGTATTCTGCAGAGATGACACTGTAATATCTCTGTCTCTAGCCATTTGTACCTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR-3UTR TCA 90 bp TGGGAAAGGGAGAATTATCCTTCAGGACCAATCCAGAGATGGCGTCCCTATGGCAGGACACCTGGGCCCTaGCCCTTCACCCGGACTTCT +
Preference number: 2 (lower is better)
Translates to: WERENYPSGPIQRWRPYGRTPGP*PFTRTS
Trigger: AGAAGTCCGGGTGAAGGGTCAGGGCCCAGGTGTCCT...GCCATAGGGACGCCATCTCTGGATTGGTCCTGAAGGATAATTCTCCCTTTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR-3UTR CCA 90 bp TCTGCAGAATACACTTTCAAGTGCCATGGGAAAGGGAGAATTATCCTTCAGGACCACCCTCAGGACACCTaGGCCCTGACCCTTCACCCG +
Preference number: 2 (lower is better)
Translates to: SAEYTFKCHGKGRIILQDHPQDT*ALTLHP
Trigger: CGGGTGAAGGGTCAGGGCCCAGGTGTCCTGAGGGTG...GTCCTGAAGGATAATTCTCCCTTTCCCATGGCACTTGAAAGTGTATTCTGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CAA 90 bp CCACCACCCCAGGTGAGGTCTCTAGGTGCTGTCACTCAAACAGACTaGGCTACAGAGAACCTTTATCCCACCTCTCTCAAGCTCCTTCTT +
Preference number: 2 (lower is better)
Translates to: PPPQVRSLGAVTQTD*ATENLYPTSLKLLL
Trigger: AAGAAGGAGCTTGAGAGAGGTGGGATAAAGGTTCTCTGTAGCCAAGTCTGTTTGAGTGACAGCACCTAGAGACCTCACCTGGGGTGGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR-3UTR GCA 90 bp TCAAACAGACTTGGCTACAGAGAACCTTTATCCCACCTCTCTCAAGCTCCTTCTGAATCACAGCAAGGCTaGGACAGGTGCTCCGGGTGG +
Preference number: 2 (lower is better)
Translates to: SNRLGYREPLSHLSQAPSESQQG*DRCSGW
Trigger: CCACCCGGAGCACCTGTCGCAGCCTTGCTGTGATTC...AGAAGGAGCTTGAGAGAGGTGGGATAAAGGTTCTCTGTAGCCAAGTCTGTTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CAA 90 bp GGCCCTCATATTCATTCTCACTGTTGGGTCTGCTGGTGTATATCTTaGAATAGAGGACGTTCTTTCTGTCTAAAGTCTTTCAGCTCAGTC +
Preference number: 2 (lower is better)
Translates to: GPHIHSHCWVCWCIS*NRGRSFCLKSFSSV
Trigger: GACTGAGCTGAAAGACTTTAGACAGAAAGAACGTCCTCTATTCAAAGATATACACCAGCAGACCCAACAGTGAGAATGAATATGAGGGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR-3UTR GCA 90 bp CACTTATCTTTCTTTCATTGTTTCTGTCTTGAGACTGATTCGCACAGGTTTTCCGCTGTGCAAGGAAGCTaGCATCAGCAACTAGACATG +
Preference number: 2 (lower is better)
Translates to: HLSFFHCFCLETDSHRFSAVQGS*HQQLDM
Trigger: CATGTCTAGTTGCTGATGGCAGCTTCCTTGCACAGC...GGAAAACCTGTGCGAATCAGTCTCAAGACAGAAACAATGAAAGAAAGATAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CCA 72 bp TGCGAATCACAGCAAGGCTGCGACAGGTGCTCCGGGTaGCAGGCTGTAAGCATGCAGGCTCTGTACATGTGC +
Preference number: 3 (lower is better)
Translates to: CESQQGCDRCSG*QAVSMQALYMC
Trigger: GCACATGTACAGAGCCTGCATGCTTACAGCCTGCCACCCGGAGCACCTGTCGCAGCCTTGCTGTGATTCGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR-3UTR CAA 90 bp AGTGCCATGGGAAAGGGAGAATTATCCTTCAGGACCAATCCAGAGATGGCGTCCTATTCATTCTCACTGTaGGGTCTGCTGGTGTATATC +
Preference number: 3 (lower is better)
Translates to: SAMGKGELSFRTNPEMASYSFSL*GLLVYI
Trigger: GATATACACCAGCAGACCCAACAGTGAGAATGAATA...GGACGCCATCTCTGGATTGGTCCTGAAGGATAATTCTCCCTTTCCCATGGCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CCA 72 bp TGTTTCTGTCTTGAGACTGATTCGCACAGGTTTTCCTaGCCCTCATATTCATTCTCACTGTTGGGTCTGCTG +
Preference number: 3 (lower is better)
Translates to: CFCLETDSHRFS*PSYSFSLLGLL
Trigger: CAGCAGACCCAACAGTGAGAATGAATATGAGGGCCAGGAAAACCTGTGCGAATCAGTCTCAAGACAGAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR-3UTR CAA 90 bp TGTCTCAAGCTGCTGATAACCCAAGATCTCTTCTCCTCTGACCACTCTTGTCTCTGCTGGTGTATATCTTaGAATAGAGGACGTTCTTTC +
Preference number: 3 (lower is better)
Translates to: CLKLLITQDLFSSDHSCLCWCIS*NRGRSF
Trigger: GAAAGAACGTCCTCTATTCAAAGATATACACCAGCA...GAGACAAGAGTGGTCAGAGGAGAAGAGATCTTGGGTTATCAGCAGCTTGAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CCA 72 bp CCTGGCCCTCATATTCATTCTCACTGTTGGGTCTGCTaGTGTATATCTTTGAATAGAGGACGTTCTTTCTGT +
Preference number: 3 (lower is better)
Translates to: PGPHIHSHCWVC*CISLNRGRSFC
Trigger: ACAGAAAGAACGTCCTCTATTCAAAGATATACACCAGCAGACCCAACAGTGAGAATGAATATGAGGGCCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CCA 72 bp ACAGGTTTTCCTGGCCCTCATATTCATTCTCACTGTTaGGTCTGCTGGTGTATATCTTTGAATAGAGGACGT +
Preference number: 3 (lower is better)
Translates to: TGFPGPHIHSHC*VCWCISLNRGR
Trigger: ACGTCCTCTATTCAAAGATATACACCAGCAGACCCAACAGTGAGAATGAATATGAGGGCCAGGAAAACCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR GCA 72 bp TTTCCTGGCCCTCATATTCATTCTCACTGTTGGGTCTaGTGGTGTATATCTTTGAATAGAGGACGTTCTTTC +
Preference number: 3 (lower is better)
Translates to: FPGPHIHSHCWV*WCISLNRGRSF
Trigger: GAAAGAACGTCCTCTATTCAAAGATATACACCAGCAGACCCAACAGTGAGAATGAATATGAGGGCCAGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CCA 72 bp TTATCCTTCAGGACCAATCCAGAGATGGCGTCCCTATaGCTTCTAGGGATATTACAGTCTTCATATGAATAC +
Preference number: 3 (lower is better)
Translates to: LSFRTNPEMASL*LLGILQSSYEY
Trigger: GTATTCATATGAAGACTGTAATATCCCTAGAAGCCATAGGGACGCCATCTCTGGATTGGTCCTGAAGGATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR GCA 72 bp TATTACAGTGTCATCTCTGCAGAATACACTTTCAAGTaGCATGGGAAAGGGAGAATTATCCTTCAGGACCAA +
Preference number: 3 (lower is better)
Translates to: YYSVISAEYTFK*HGKGRIILQDQ
Trigger: TTGGTCCTGAAGGATAATTCTCCCTTTCCCATGGCACTTGAAAGTGTATTCTGCAGAGATGACACTGTAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR-3UTR CAA 90 bp ATTCACTTATCTTTCTTTCATTGTTTCTGTCTTGAGACTGATTCGCACAGGTTTCTAGACATGATTGTCTaGGAATGTGTTGAAAGGGAG +
Preference number: 3 (lower is better)
Translates to: IHLSFFHCFCLETDSHRFLDMIV*ECVERE
Trigger: CTCCCTTTCAACACATTCCAAGACAATCATGTCTAG...AAACCTGTGCGAATCAGTCTCAAGACAGAAACAATGAAAGAAAGATAAGTGAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CCA 90 bp AGTGCCATGGGAAAGGGAGAATTATCCTTCAGGACCAATCCAGAGATGGCGTCCGGCTCCCCCAGGCTTTaGGGTGTAGGCATGCAGGCA +
Preference number: 4 (lower is better)
Translates to: SAMGKGELSFRTNPEMASGSPRL*GVGMQA
Trigger: TGCCTGCATGCCTACACCCCAAAGCCTGGGGGAGCC...GGACGCCATCTCTGGATTGGTCCTGAAGGATAATTCTCCCTTTCCCATGGCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CCA 90 bp CTCAAGCTGCTGATAACCCAAGATCTCTTCTCCTCTGACCACTCTTGTCTCCCCTTGTTGGAGCACTTCTaGTACCATTCCATGCCGGCC +
Preference number: 4 (lower is better)
Translates to: LKLLITQDLFSSDHSCLPLLEHF*YHSMPA
Trigger: GGCCGGCATGGAATGGTACCAGAAGTGCTCCAACAA...GGGGAGACAAGAGTGGTCAGAGGAGAAGAGATCTTGGGTTATCAGCAGCTTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR TCA 90 bp CTCAAACAGACTTGGCTACAGAGAACCTTTATCCCACCTCTCTCAAGCTCCTTCCTCACGATCCAGCACTaGTTCGAAGTAGCGGCTCTG +
Preference number: 4 (lower is better)
Translates to: LKQTWLQRTFIPPLSSSFLTIQH*FEVAAL
Trigger: CAGAGCCGCTACTTCGAATCAGTGCTGGATCGTGAG...GAAGGAGCTTGAGAGAGGTGGGATAAAGGTTCTCTGTAGCCAAGTCTGTTTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CCA 90 bp GCTTTTGTGGAAGGAGAGAGTAGACGTGTTCCCTCAAGACAGAGAGTGACCCCCATGATGAACTTCCACTaGCGATCCCTTTCCACTGCA +
Preference number: 4 (lower is better)
Translates to: AFVEGESRRVPSRQRVTPMMNFH*RSLSTA
Trigger: TGCAGTGGAAAGGGATCGCCAGTGGAAGTTCATCAT...GGGGGTCACTCTCTGTCTTGAGGGAACACGTCTACTCTCTCCTTCCACAAAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CCA 90 bp GGAAGCTGCCATCAGCAACTAGACATGATTGTCTTGGAATGTGTTGAAAGGGAGGGCTGTGGTCACCAGTaGCAGAAGAACCCACAGAAG +
Preference number: 4 (lower is better)
Translates to: GSCHQQLDMIVLECVEREGCGHQ*QKNPQK
Trigger: CTTCTGTGGGTTCTTCTGCCACTGGTGACCACAGCC...CTCCCTTTCAACACATTCCAAGACAATCATGTCTAGTTGCTGATGGCAGCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CCA 90 bp ATTAACATATGTGATATGACACCCTCAGGACACCTGGGCCCTGACCCTTCACCCCATCCAGCAGGAATATaGACACCTCTTGCTATAGCG +
Preference number: 4 (lower is better)
Translates to: INICDMTPSGHLGPDPSPHPAGI*TPLAIA
Trigger: CGCTATAGCAAGAGGTGTCCATATTCCTGCTGGATG...GGGTGAAGGGTCAGGGCCCAGGTGTCCTGAGGGTGTCATATCACATATGTTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CAA 72 bp CAGGTGAGGTCTCTAGGTGCTGTCACTCAAACAGACTaGGCTACAGAGAACCTTTATCCCACCTCTCTCAAG +
Preference number: 4 (lower is better)
Translates to: QVRSLGAVTQTD*ATENLYPTSLK
Trigger: CTTGAGAGAGGTGGGATAAAGGTTCTCTGTAGCCAAGTCTGTTTGAGTGACAGCACCTAGAGACCTCACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CCA 90 bp TGGGAAAGGGAGAATTATCCTTCAGGACCAATCCAGAGATGGCGTCCCTATGGCCCACCAATCCATTGTTaGAGCACTTCTGGTACCATT +
Preference number: 4 (lower is better)
Translates to: WERENYPSGPIQRWRPYGPPIHC*STSGTI
Trigger: AATGGTACCAGAAGTGCTCCAACAATGGATTGGTGG...GCCATAGGGACGCCATCTCTGGATTGGTCCTGAAGGATAATTCTCCCTTTCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CCA 90 bp TGTCTCAAGCTGCTGATAACCCAAGATCTCTTCTCCTCTGACCACTCTTGTCTCCCACTGCAGAGAAAGTaGTTGTTGCTCCTCGCATAT +
Preference number: 4 (lower is better)
Translates to: CLKLLITQDLFSSDHSCLPLQRK*LLLLAY
Trigger: ATATGCGAGGAGCAACAACCACTTTCTCTGCAGTGG...GAGACAAGAGTGGTCAGAGGAGAAGAGATCTTGGGTTATCAGCAGCTTGAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR GCA 90 bp TCAAACAGACTTGGCTACAGAGAACCTTTATCCCACCTCTCTCAAGCTCCTTCTAGAGAAAGTGGTTGTTaGTCCTCGCATATAAAAATC +
Preference number: 4 (lower is better)
Translates to: SNRLGYREPLSHLSQAPSRESGC*SSHIKI
Trigger: GATTTTTATATGCGAGGAGCAACAACCACTTTCTCT...AGAAGGAGCTTGAGAGAGGTGGGATAAAGGTTCTCTGTAGCCAAGTCTGTTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
3UTR CAA 72 bp CAAGGAAGCTGCCATCAGCAACTAGACATGATTGTCTaGGAATGTGTTGAAAGGGAGAAACATGGCTTAATT +
Preference number: 4 (lower is better)
Translates to: QGSCHQQLDMIV*ECVEREKHGLI
Trigger: AATTAAGCCATGTTTCTCCCTTTCAACACATTCCAAGACAATCATGTCTAGTTGCTGATGGCAGCTTCCTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CAA 90 bp GCAAGGCTGCGACAGGTGCTCCGGGTGGCAGGCTGTAAGCATGCAGGCTCTGTACTGGTAGCTGAAGCCTaGGCGGTTAAGATTCACCCA +
Preference number: 5 (lower is better)
Translates to: ARLRQVLRVAGCKHAGSVLVAEA*AVKIHP
Trigger: TGGGTGAATCTTAACCGCCAAGGCTTCAGCTACCAG...TACAGAGCCTGCATGCTTACAGCCTGCCACCCGGAGCACCTGTCGCAGCCTTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CCA 90 bp AAGATTCACCCATCCATCATCACCGTAGTCCTGGTACTGCTGGTATaGGTACCCGTAGCCACCATACTGGCCCCAGGCTGTGGTCACCAG +
Preference number: 5 (lower is better)
Translates to: KIHPSIITVVLVLLV*VPVATILAPGCGHQ
Trigger: CTGGTGACCACAGCCTGGGGCCAGTATGGTGGCTACGGGTACCCATACCAGCAGTACCAGGACTACGGTGATGATGGATGGGTGAATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CAA 90 bp GCAAGGCTGCGACAGGTGCTCCGGGTGGCAGGCTGTAAGCATGCAGGCTCTGTACTGCAGAGAAAGTGGTaGTTGCTCCTCGCATATAAA +
Preference number: 5 (lower is better)
Translates to: ARLRQVLRVAGCKHAGSVLQRKW*LLLAYK
Trigger: TTTATATGCGAGGAGCAACAACCACTTTCTCTGCAG...TACAGAGCCTGCATGCTTACAGCCTGCCACCCGGAGCACCTGTCGCAGCCTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CAA 90 bp GGGAAAGGGAGAATTATCCTTCAGGACCAATCCAGAGATGGCGTCCCTATGGCTCCCGCCACCAATCCATaGTTGGAGCACTTCTGGTAC +
Preference number: 5 (lower is better)
Translates to: GKGRIILQDQSRDGVPMAPATNP*LEHFWY
Trigger: GTACCAGAAGTGCTCCAACAATGGATTGGTGGCGGG...AGCCATAGGGACGCCATCTCTGGATTGGTCCTGAAGGATAATTCTCCCTTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS TCA 90 bp CTTGCTATAGCGGCAGCAGTAAAATTGCCACTCACGATCCAGCACTaGTTCGAAGTAGCGGCTCTGGAACCCCGCCACCAATCCATTGTT +
Preference number: 5 (lower is better)
Translates to: LAIAAAVKLPLTIQH*FEVAALEPRHQSIV
Trigger: AACAATGGATTGGTGGCGGGGTTCCAGAGCCGCTACTTCGAATCAGTGCTGGATCGTGAGTGGCAATTTTACTGCTGCCGCTATAGCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS GCA 90 bp GGCTTGGGTACTCTGTTGTCATCCAGCAGGAATATGGACACCTCTTaGTATAGCGGCAGCAGTAAAATTGCCACTCACGATCCAGCACTG +
Preference number: 5 (lower is better)
Translates to: GLGTLLSSSRNMDTS*YSGSSKIATHDPAL
Trigger: CAGTGCTGGATCGTGAGTGGCAATTTTACTGCTGCCGCTATAGCAAGAGGTGTCCATATTCCTGCTGGATGACAACAGAGTACCCAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CCA 90 bp TTCCCCATAGTGGCTTGGGTACTCTGTTGTCATCCAGCAGGAATATaGACACCTCTTGCTATAGCGGCAGCAGTAAAATTGCCACTCACG +
Preference number: 5 (lower is better)
Translates to: FPIVAWVLCCHPAGI*TPLAIAAAVKLPLT
Trigger: CGTGAGTGGCAATTTTACTGCTGCCGCTATAGCAAGAGGTGTCCATATTCCTGCTGGATGACAACAGAGTACCCAAGCCACTATGGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CAA 90 bp TGTCTCAAGCTGCTGATAACCCAAGATCTCTTCTCCTCTGACCACTCTTGTCTCCTTCCCCATAGTGGCTaGGGTACTCTGTTGTCATCC +
Preference number: 5 (lower is better)
Translates to: CLKLLITQDLFSSDHSCLLPHSG*GTLLSS
Trigger: GGATGACAACAGAGTACCCAAGCCACTATGGGGAAG...GAGACAAGAGTGGTCAGAGGAGAAGAGATCTTGGGTTATCAGCAGCTTGAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CAA 90 bp CACTTATCTTTCTTTCATTGTTTCTGTCTTGAGACTGATTCGCACAGGTTTTCCTCCATGCCGGCCCTGTaGATCTCCTCCCACCAGCAC +
Preference number: 5 (lower is better)
Translates to: HLSFFHCFCLETDSHRFSSMPAL*ISSHQH
Trigger: GTGCTGGTGGGAGGAGATCAACAGGGCCGGCATGGA...GGAAAACCTGTGCGAATCAGTCTCAAGACAGAAACAATGAAAGAAAGATAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS GCA 90 bp GAACTTCCACTGGCGATCCCTTTCCACTGCAGAGAAAGTGGTTGTTaGTCCTCGCATATAAAAATCGTAGTCATAGGAAATCATGTCCAT +
Preference number: 5 (lower is better)
Translates to: ELPLAIPFHCRESGC*SSHIKIVVIGNHVH
Trigger: ATGGACATGATTTCCTATGACTACGATTTTTATATGCGAGGAGCAACAACCACTTTCTCTGCAGTGGAAAGGGATCGCCAGTGGAAGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CAA 90 bp TCTATGTGGCTTTTGTGGAAGGAGAGAGTAGACGTGTTCCCTCAAGACAGAGAGCAGAGAAAGTGGTTGTaGCTCCTCGCATATAAAAAT +
Preference number: 5 (lower is better)
Translates to: SMWLLWKERVDVFPQDREQRKWL*LLAYKN
Trigger: ATTTTTATATGCGAGGAGCAACAACCACTTTCTCTG...CTCTCTGTCTTGAGGGAACACGTCTACTCTCTCCTTCCACAAAAGCCACATAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS-3UTR CAA 90 bp ATTCACTTATCTTTCTTTCATTGTTTCTGTCTTGAGACTGATTCGCACAGGTTTGCGGCAGCAGTAAAATaGCCACTCACGATCCAGCAC +
Preference number: 5 (lower is better)
Translates to: IHLSFFHCFCLETDSHRFAAAVK*PLTIQH
Trigger: GTGCTGGATCGTGAGTGGCAATTTTACTGCTGCCGC...AAACCTGTGCGAATCAGTCTCAAGACAGAAACAATGAAAGAAAGATAAGTGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CCA 72 bp CCATCCATCATCACCGTAGTCCTGGTACTGCTGGTATaGGTACCCGTAGCCACCATACTGGCCCCAGGCTGT +
Preference number: 6 (lower is better)
Translates to: PSIITVVLVLLV*VPVATILAPGC
Trigger: ACAGCCTGGGGCCAGTATGGTGGCTACGGGTACCCATACCAGCAGTACCAGGACTACGGTGATGATGGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CCA 72 bp AGTAGCGGCTCTGGAACCCCGCCACCAATCCATTGTTaGAGCACTTCTGGTACCATTCCATGCCGGCCCTGT +
Preference number: 6 (lower is better)
Translates to: SSGSGTPPPIHC*STSGTIPCRPC
Trigger: ACAGGGCCGGCATGGAATGGTACCAGAAGTGCTCCAACAATGGATTGGTGGCGGGGTTCCAGAGCCGCTACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS TCA 72 bp GCGGCAGCAGTAAAATTGCCACTCACGATCCAGCACTaGTTCGAAGTAGCGGCTCTGGAACCCCGCCACCAA +
Preference number: 6 (lower is better)
Translates to: AAAVKLPLTIQH*FEVAALEPRHQ
Trigger: TTGGTGGCGGGGTTCCAGAGCCGCTACTTCGAATCAGTGCTGGATCGTGAGTGGCAATTTTACTGCTGCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CAA 72 bp CTTCTTGCTAAAGATGCTCCTCACAGCTACCACCACTaGCCCGTGGGGACACTGGTAGCTGAAGCCTTGGCG +
Preference number: 6 (lower is better)
Translates to: LLAKDAPHSYHH*PVGTLVAEALA
Trigger: CGCCAAGGCTTCAGCTACCAGTGTCCCCACGGGCAAGTGGTGGTAGCTGTGAGGAGCATCTTTAGCAAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CAA 90 bp CACAGCTACCACCACTTGCCCGTGGGGACACTGGTAGCTGAAGCCTaGGCGGTTAAGATTCACCCATCCATCATCACCGTAGTCCTGGTA +
Preference number: 6 (lower is better)
Translates to: HSYHHLPVGTLVAEA*AVKIHPSIITVVLV
Trigger: TACCAGGACTACGGTGATGATGGATGGGTGAATCTTAACCGCCAAGGCTTCAGCTACCAGTGTCCCCACGGGCAAGTGGTGGTAGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CAA 72 bp CACCACTTGCCCGTGGGGACACTGGTAGCTGAAGCCTaGGCGGTTAAGATTCACCCATCCATCATCACCGTA +
Preference number: 6 (lower is better)
Translates to: HHLPVGTLVAEA*AVKIHPSIITV
Trigger: TACGGTGATGATGGATGGGTGAATCTTAACCGCCAAGGCTTCAGCTACCAGTGTCCCCACGGGCAAGTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CAA 72 bp CAGGCTTTGGGGTGTAGGCATGCAGGCATAGTTCCATaGTCTGTCAGAGCCTTCCTTCTTGCTAAAGATGCT +
Preference number: 6 (lower is better)
Translates to: QALGCRHAGIVP*SVRAFLLAKDA
Trigger: AGCATCTTTAGCAAGAAGGAAGGCTCTGACAGACAATGGAACTATGCCTGCATGCCTACACCCCAAAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CCA 72 bp GTGGCTTGGGTACTCTGTTGTCATCCAGCAGGAATATaGACACCTCTTGCTATAGCGGCAGCAGTAAAATTG +
Preference number: 6 (lower is better)
Translates to: VAWVLCCHPAGI*TPLAIAAAVKL
Trigger: CAATTTTACTGCTGCCGCTATAGCAAGAGGTGTCCATATTCCTGCTGGATGACAACAGAGTACCCAAGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CAA 72 bp TGTCCATGTCTTCCCCATAGTGGCTTGGGTACTCTGTaGTCATCCAGCAGGAATATGGACACCTCTTGCTAT +
Preference number: 6 (lower is better)
Translates to: CPCLPHSGLGTL*SSSRNMDTSCY
Trigger: ATAGCAAGAGGTGTCCATATTCCTGCTGGATGACAACAGAGTACCCAAGCCACTATGGGGAAGACATGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS GCA 72 bp ACTCTGTTGTCATCCAGCAGGAATATGGACACCTCTTaGTATAGCGGCAGCAGTAAAATTGCCACTCACGAT +
Preference number: 6 (lower is better)
Translates to: TLLSSSRNMDTS*YSGSSKIATHD
Trigger: ATCGTGAGTGGCAATTTTACTGCTGCCGCTATAGCAAGAGGTGTCCATATTCCTGCTGGATGACAACAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CAA 72 bp CATAGGAAATCATGTCCATGTCTTCCCCATAGTGGCTaGGGTACTCTGTTGTCATCCAGCAGGAATATGGAC +
Preference number: 6 (lower is better)
Translates to: HRKSCPCLPHSG*GTLLSSSRNMD
Trigger: GTCCATATTCCTGCTGGATGACAACAGAGTACCCAAGCCACTATGGGGAAGACATGGACATGATTTCCTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CAA 72 bp TCCACTGGCGATCCCTTTCCACTGCAGAGAAAGTGGTaGTTGCTCCTCGCATATAAAAATCGTAGTCATAGG +
Preference number: 6 (lower is better)
Translates to: STGDPFPLQRKW*LLLAYKNRSHR
Trigger: CCTATGACTACGATTTTTATATGCGAGGAGCAACAACCACTTTCTCTGCAGTGGAAAGGGATCGCCAGTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CCA 72 bp ATAGGAAATCATGTCCATGTCTTCCCCATAGTGGCTTaGGTACTCTGTTGTCATCCAGCAGGAATATGGACA +
Preference number: 6 (lower is better)
Translates to: IGNHVHVFPIVA*VLCCHPAGIWT
Trigger: TGTCCATATTCCTGCTGGATGACAACAGAGTACCCAAGCCACTATGGGGAAGACATGGACATGATTTCCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6
CDS CCA 72 bp ACTTCCACTGGCGATCCCTTTCCACTGCAGAGAAAGTaGTTGTTGCTCCTCGCATATAAAAATCGTAGTCAT +
Preference number: 6 (lower is better)
Translates to: TSTGDPFPLQRK*LLLLAYKNRSH
Trigger: ATGACTACGATTTTTATATGCGAGGAGCAACAACCACTTTCTCTGCAGTGGAAAGGGATCGCCAGTGGAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027861.6