Pregenerated sensors for DPPA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046323

Ensembl transcript IDs: ENSMUST00000049644.9, ENSMUST00000123429.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	CTATTTACTTTATTCCTCAGCCCTGGGCCTCACAGCTTGAGGCTTCTAAACTTCGCACCGACAACAAAGTaGGGACCCTTCTCTTGGGAA	+
Preference number: 4 (lower is better) Translates to: LFTLFLSPGPHSLRLLNFAPTTK*GPFSWE Trigger: TTCCCAAGAGAAGGGTCCGCACTTTGTTGTCGGTGC...GAAGTTTAGAAGCCTCAAGCTGTGAGGCCCAGGGCTGAGGAATAAAGTAAATAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049644.9 ENSMUST00000123429.2
CDS-3UTR GCA 90 bp	ACTCCAAATTCTATTTACTTTATTCCTCAGCCCTGGGCCTCACAGCTTGAGGCTGCACCGACAACAAAGTaGGGACCCTTCTCTTGGGAA	+
Preference number: 4 (lower is better) Translates to: TPNSIYFIPQPWASQLEAAPTTK*GPFSWE Trigger: TTCCCAAGAGAAGGGTCCGCACTTTGTTGTCGGTGC...AGCCTCAAGCTGTGAGGCCCAGGGCTGAGGAATAAAGTAAATAGAATTTGGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049644.9 ENSMUST00000123429.2
CDS-3UTR TCA 90 bp	ACTCCAAATTCTATTTACTTTATTCCTCAGCCCTGGGCCTCACAGCTTGAGGCTTCTTCATCTTTCTTCTaGGGAGTTTCAGGGTCCTTC	+
Preference number: 4 (lower is better) Translates to: TPNSIYFIPQPWASQLEASSSFF*GVSGSF Trigger: GAAGGACCCTGAAACTCCTCAGAAGAAAGATGAAGA...AGCCTCAAGCTGTGAGGCCCAGGGCTGAGGAATAAAGTAAATAGAATTTGGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049644.9
CDS-3UTR GCA 90 bp	GCCTCACAGCTTGAGGCTTCTAAACTTCACATAAATCTGGATCGTTGTGCATCCAAGTCTTCTCATCTTTaGTATAGGGTCTTTCAGCAC	+
Preference number: 4 (lower is better) Translates to: ASQLEASKLHINLDRCASKSSHL*YRVFQH Trigger: GTGCTGAAAGACCCTATAGCAAAGATGAGAAGACTT...GGATGCACAACGATCCAGATTTATGTGAAGTTTAGAAGCCTCAAGCTGTGAGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049644.9 ENSMUST00000123429.2
CDS-3UTR GCA 90 bp	CTTGAGGCTTCTAAACTTCACATAAATCTGGATCGTTGTGCATCCTATCTACAAAAGTCTTCTCATCTTTaGTATAGGGTCTTTCAGCAC	+
Preference number: 4 (lower is better) Translates to: LEASKLHINLDRCASYLQKSSHL*YRVFQH Trigger: GTGCTGAAAGACCCTATAGCAAAGATGAGAAGACTT...TTGTAGATAGGATGCACAACGATCCAGATTTATGTGAAGTTTAGAAGCCTCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049644.9 ENSMUST00000123429.2
CDS-3UTR CAA 90 bp	GTTGTGCATCCTATCTACAATTTAAAGGTTAACAAGTTAAGATTTCCCAGCACCTTTCAGGGTCCTTCATaGGGTCGACTTTCTCTGATG	+
Preference number: 5 (lower is better) Translates to: VVHPIYNLKVNKLRFPSTFQGPS*GRLSLM Trigger: CATCAGAGAAAGTCGACCCAATGAAGGACCCTGAAA...GGTGCTGGGAAATCTTAACTTGTTAACCTTTAAATTGTAGATAGGATGCACAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049644.9
CDS TCA 72 bp	TCTGTATCATCCAAAGCGTCCTCTTCATCTTTCTTCTaGGGAGTTTCAGGGTCCTTCATTGGGTCGACTTTC	+
Preference number: 6 (lower is better) Translates to: SVSSKASSSSFF*GVSGSFIGSTF Trigger: GAAAGTCGACCCAATGAAGGACCCTGAAACTCCTCAGAAGAAAGATGAAGAGGACGCTTTGGATGATACAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049644.9
CDS TCA 72 bp	CCCATCTTTGATAATGGCAGAAAGTGCAGAGACATCTaGATGGCTCACTGTCCCGTTCAAACTCATTTCCTT	+
Preference number: 6 (lower is better) Translates to: PIFDNGRKCRDI*MAHCPVQTHFL Trigger: AAGGAAATGAGTTTGAACGGGACAGTGAGCCATTCAGATGTCTCTGCACTTTCTGCCATTATCAAAGATGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049644.9 ENSMUST00000123429.2
CDS CCA 72 bp	TCTTTGATAATGGCAGAAAGTGCAGAGACATCTGAATaGCTCACTGTCCCGTTCAAACTCATTTCCTTCGAG	+
Preference number: 6 (lower is better) Translates to: SLIMAESAETSE*LTVPFKLISFE Trigger: CTCGAAGGAAATGAGTTTGAACGGGACAGTGAGCCATTCAGATGTCTCTGCACTTTCTGCCATTATCAAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049644.9 ENSMUST00000123429.2
CDS CAA 72 bp	ACTGTCCCGTTCAAACTCATTTCCTTCGAGCCTTTTTaGTCTCTGCTCAATCCGAACAAGTCTTCTCATCTT	+
Preference number: 6 (lower is better) Translates to: TVPFKLISFEPF*SLLNPNKSSHL Trigger: AAGATGAGAAGACTTGTTCGGATTGAGCAGAGACAAAAAAGGCTCGAAGGAAATGAGTTTGAACGGGACAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049644.9 ENSMUST00000123429.2

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