Pregenerated sensors for DPPA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064010Ensembl transcript IDs: ENSMUST00000077173.13, ENSMUST00000109227.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAACATTGTCCCACCTGCAACAGGACTTCTCTAAGGCTGAGACCCTaGGGCCCCCTCGCTCATCTTCCCTTCCATTTCTGCTTTGTCTCC | + |
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Preference number: 1 (lower is better) Translates to: KHCPTCNRTSLRLRP*GPLAHLPFHFCFVS Trigger: GGAGACAAAGCAGAAATGGAAGGGAAGATGAGCGAGGGGGCCTCAGGGTCTCAGCCTTAGAGAAGTCCTGTTGCAGGTGGGACAATGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077173.13 |
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| 3UTR GCA 90 bp | CAAGGCAGAAGTGTAGTGAAAATAGCTCTAATGAACTCAAGCCTGTaGCCCATTATCCTCTTCCCAGGTGTCTGCCTGGTCCATACTCAC | + |
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Preference number: 1 (lower is better) Translates to: QGRSVVKIALMNSSL*PIILFPGVCLVHTH Trigger: GTGAGTATGGACCAGGCAGACACCTGGGAAGAGGATAATGGGGCACAGGCTTGAGTTCATTAGAGCTATTTTCACTACACTTCTGCCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077173.13 |
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| 3UTR-3UTR TCA 90 bp | ATGACTAGGCCTATGAACAGCGAGAGGGACGCCCTCTCCACTGCTGCTGGCAAAGAACACGCTATGAACTaGCACAGAGAAAATATAACA | + |
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Preference number: 2 (lower is better) Translates to: MTRPMNSERDALSTAAGKEHAMN*HRENIT Trigger: TGTTATATTTTCTCTGTGTCAGTTCATAGCGTGTTC...TTTGCCAGCAGCAGTGGAGAGGGCGTCCCTCTCGCTGTTCATAGGCCTAGTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| 3UTR-3UTR TCA 90 bp | CTCCACTGCTGCTGGCAAATTGGAACACGCTATGAACTGACACAGAGAAAATATAACAGCATGGTCAGGTaGCATTCTTTCTTCTGCAGT | + |
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Preference number: 2 (lower is better) Translates to: LHCCWQIGTRYELTQRKYNSMVR*HSFFCS Trigger: ACTGCAGAAGAAAGAATGTCACCTGACCATGCTGTT...ATATTTTCTCTGTGTCAGTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| 3UTR-3UTR GCA 90 bp | TCTGCATTACCAATGATTTTGTCTCATAGACACAACTTGGGGCATCTAAAGCACTCCTGTTTGAGAGAATaGTCCCCAGTGTGTGGTAGG | + |
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Preference number: 2 (lower is better) Translates to: SALPMILSHRHNLGHLKHSCLRE*SPVCGR Trigger: CCTACCACACACTGGGGAGCATTCTCTCAAACAGGA...GTGCTTTAGATGCCCCAAGTTGTGTCTATGAGACAAAATCATTGGTAATGCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000077173.13 |
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| 3UTR TCA 72 bp | CCCACCTGCAACAGGACTTCTCTAAGGCTGAGACCCTaGGGCCCCCTCGCTCATCTTCCCTTCCATTTCTGC | + |
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Preference number: 3 (lower is better) Translates to: PTCNRTSLRLRP*GPLAHLPFHFC Trigger: GCAGAAATGGAAGGGAAGATGAGCGAGGGGGCCTCAGGGTCTCAGCCTTAGAGAAGTCCTGTTGCAGGTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077173.13 |
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| 3UTR CCA 72 bp | TATGAACAGCGAGAGGGACGCCCTCTCCACTGCTGCTaGCAAATTGGAACACGCTATGAACTGACACAGAGA | + |
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Preference number: 3 (lower is better) Translates to: YEQREGRPLHCC*QIGTRYELTQR Trigger: TCTCTGTGTCAGTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAGAGGGCGTCCCTCTCGCTGTTCATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| 3UTR TCA 72 bp | AATGCTCCCCAGTGTGTGGTAGGAATGAGTCCTATATaGACAATGACTAGGCCTATGAACAGCGAGAGGGAC | + |
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Preference number: 3 (lower is better) Translates to: NAPQCVVGMSPI*TMTRPMNSERD Trigger: GTCCCTCTCGCTGTTCATAGGCCTAGTCATTGTTCATATAGGACTCATTCCTACCACACACTGGGGAGCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077173.13 |
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| 3UTR GCA 72 bp | AGTGTAGTGAAAATAGCTCTAATGAACTCAAGCCTGTaGCCCATTATCCTCTTCCCAGGTGTCTGCCTGGTC | + |
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Preference number: 3 (lower is better) Translates to: SVVKIALMNSSL*PIILFPGVCLV Trigger: GACCAGGCAGACACCTGGGAAGAGGATAATGGGGCACAGGCTTGAGTTCATTAGAGCTATTTTCACTACACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077173.13 |
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| 3UTR TCA 72 bp | TCCACTGCTGCTGGCAAATTGGAACACGCTATGAACTaGCACAGAGAAAATATAACAGCATGGTCAGGTGAC | + |
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Preference number: 3 (lower is better) Translates to: STAAGKLEHAMN*HRENITAWSGD Trigger: GTCACCTGACCATGCTGTTATATTTTCTCTGTGTCAGTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR CCA 90 bp | AGCGAGAGGGACGCCCTCTCCACTGCTGCTGGCAAATTGGAACACGCTATGAACGTGAAAATGTCACAGTaGTGCTCCAAACTGCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: SERDALSTAAGKLEHAMNVKMSQ*CSKLLG Trigger: TCCCAGCAGTTTGGAGCACCACTGTGACATTTTCAC...GTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAGAGGGCGTCCCTCTCGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR TCA 90 bp | CGCCCTCTCCACTGCTGCTGGCAAATTGGAACACGCTATGAACTGACACAGAGAGTAGGAGGCCTGAAATaGGGACTTGAAGGGACATCA | + |
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Preference number: 4 (lower is better) Translates to: RPLHCCWQIGTRYELTQRVGGLK*GLEGTS Trigger: TGATGTCCCTTCAAGTCCTCATTTCAGGCCTCCTAC...TCTCTGTGTCAGTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAGAGGGCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR TCA 90 bp | AGCGAGAGGGACGCCCTCTCCACTGCTGCTGGCAAATTGGAACACGCTATGAACATTCCAAGGGTCATGTaGAAATGTCACAGTGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: SERDALSTAAGKLEHAMNIPRVM*KCHSGA Trigger: AGCACCACTGTGACATTTTCACATGACCCTTGGAAT...GTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAGAGGGCGTCCCTCTCGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR GCA 90 bp | GGACGCCCTCTCCACTGCTGCTGGCAAATTGGAACACGCTATGAACTGACACAGAAGGAGGATCAGCAATaGAGCAGACACAGAGATTCC | + |
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Preference number: 4 (lower is better) Translates to: GRPLHCCWQIGTRYELTQKEDQQ*SRHRDS Trigger: GGAATCTCTGTGTCTGCTGCATTGCTGATCCTCCTT...CTGTGTCAGTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAGAGGGCGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR GCA 90 bp | AGCGAGAGGGACGCCCTCTCCACTGCTGCTGGCAAATTGGAACACGCTATGAACAGCTTCGGGTTGCTCTaGACTTTGAAAAACTTCATT | + |
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Preference number: 4 (lower is better) Translates to: SERDALSTAAGKLEHAMNSFGLL*TLKNFI Trigger: AATGAAGTTTTTCAAAGTGCAGAGCAACCCGAAGCT...GTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAGAGGGCGTCCCTCTCGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR GCA 90 bp | GGACGCCCTCTCCACTGCTGCTGGCAAATTGGAACACGCTATGAACTGACACAGAGCTTCGGGTTGCTCTaGACTTTGAAAAACTTCATT | + |
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Preference number: 4 (lower is better) Translates to: GRPLHCCWQIGTRYELTQSFGLL*TLKNFI Trigger: AATGAAGTTTTTCAAAGTGCAGAGCAACCCGAAGCT...CTGTGTCAGTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAGAGGGCGTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR TCA 90 bp | AGACACAACTTGGGGCATCTAAAGCACACAGGAGATTCTAAGCTGTTCCTGTTTGTAGGAGGCCTGAAATaGGGACTTGAAGGGACATCA | + |
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Preference number: 4 (lower is better) Translates to: RHNLGHLKHTGDSKLFLFVGGLK*GLEGTS Trigger: TGATGTCCCTTCAAGTCCTCATTTCAGGCCTCCTAC...AAACAGGAACAGCTTAGAATCTCCTGTGTGCTTTAGATGCCCCAAGTTGTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077173.13 |
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| CDS-3UTR CCA 90 bp | CTCCACTGCTGCTGGCAAATTGGAACACGCTATGAACTGACACAGAGAAAATATGTGAAAATGTCACAGTaGTGCTCCAAACTGCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LHCCWQIGTRYELTQRKYVKMSQ*CSKLLG Trigger: TCCCAGCAGTTTGGAGCACCACTGTGACATTTTCAC...ATATTTTCTCTGTGTCAGTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR TCA 90 bp | CTCCACTGCTGCTGGCAAATTGGAACACGCTATGAACTGACACAGAGAAAATATGGGATCACTTCAGTGTaGTTATTCCAAGGGTCATGT | + |
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Preference number: 4 (lower is better) Translates to: LHCCWQIGTRYELTQRKYGITSV*LFQGSC Trigger: ACATGACCCTTGGAATAATCACACTGAAGTGATCCC...ATATTTTCTCTGTGTCAGTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR GCA 90 bp | CACAGAGAAAATATAACAGCATGGTCAGGTGACATTCTTTCTTCTGCAGTCTTAAAGGAGGATCAGCAATaGAGCAGACACAGAGATTCC | + |
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Preference number: 4 (lower is better) Translates to: HRENITAWSGDILSSAVLKEDQQ*SRHRDS Trigger: GGAATCTCTGTGTCTGCTGCATTGCTGATCCTCCTT...TAAGACTGCAGAAGAAAGAATGTCACCTGACCATGCTGTTATATTTTCTCTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR TCA 90 bp | CACAGAGAAAATATAACAGCATGGTCAGGTGACATTCTTTCTTCTGCAGTCTTAATTCCAAGGGTCATGTaGAAATGTCACAGTGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: HRENITAWSGDILSSAVLIPRVM*KCHSGA Trigger: AGCACCACTGTGACATTTTCACATGACCCTTGGAAT...TAAGACTGCAGAAGAAAGAATGTCACCTGACCATGCTGTTATATTTTCTCTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| 3UTR CAA 72 bp | CGTATCCCTCTCTTCTTTATGGGTTTCATAACTAAGTaGAAGTCCCTTTTCTGCATTACCAATGATTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: RIPLFFMGFITK*KSLFCITNDFV Trigger: GACAAAATCATTGGTAATGCAGAAAAGGGACTTCAACTTAGTTATGAAACCCATAAAGAAGAGAGGGATACG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077173.13 |
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| CDS-3UTR CAA 90 bp | CAGCGAGAGGGACGCCCTCTCCACTGCTGCTGGCAAATTGGAACACGCTATGAAGGGTTGCTCTGCACTTaGAAAAACTTCATTCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: QREGRPLHCCWQIGTRYEGLLCT*KNFILK Trigger: TTTCAGAATGAAGTTTTTCAAAGTGCAGAGCAACCC...TTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAGAGGGCGTCCCTCTCGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR CAA 90 bp | CTCCACTGCTGCTGGCAAATTGGAACACGCTATGAACTGACACAGAGAAAATATGATCTTCAGGGAGGGTaGTGTTGGGATCACTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: LHCCWQIGTRYELTQRKYDLQGG*CWDHFS Trigger: ACTGAAGTGATCCCAACACAACCCTCCCTGAAGATC...ATATTTTCTCTGTGTCAGTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS TCA 90 bp | TTAGTGGAGATCTTCAGGGAGGGTTGTGTTGGGATCACTTCAGTGTaGTTATTCCAAGGGTCATGTGAAAATGTCACAGTGGTGCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: LVEIFREGCVGITSV*LFQGSCENVTVVLQ Trigger: TTGGAGCACCACTGTGACATTTTCACATGACCCTTGGAATAATCACACTGAAGTGATCCCAACACAACCCTCCCTGAAGATCTCCACTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR CAA 90 bp | CACTGCTGCTGGCAAATTGGAACACGCTATGAACTGACACAGAGAAAATATAACGATCTTCAGGGAGGGTaGTGTTGGGATCACTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: HCCWQIGTRYELTQRKYNDLQGG*CWDHFS Trigger: ACTGAAGTGATCCCAACACAACCCTCCCTGAAGATC...GTTATATTTTCTCTGTGTCAGTTCATAGCGTGTTCCAATTTGCCAGCAGCAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS-3UTR CAA 90 bp | AGACACAACTTGGGGCATCTAAAGCACACAGGAGATTCTAAGCTGTTCCTGTTTGGGTTGCTCTGCACTTaGAAAAACTTCATTCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: RHNLGHLKHTGDSKLFLFGLLCT*KNFILK Trigger: TTTCAGAATGAAGTTTTTCAAAGTGCAGAGCAACCC...AAACAGGAACAGCTTAGAATCTCCTGTGTGCTTTAGATGCCCCAAGTTGTGTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077173.13 |
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| CDS GCA 72 bp | GATTATTCCAAGGGTCATGTGAAAATGTCACAGTGGTaGTCCAAACTGCTGGGAGAAGGAGTAGGAGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: DYSKGHVKMSQW*SKLLGEGVGGL Trigger: CAGGCCTCCTACTCCTTCTCCCAGCAGTTTGGAGCACCACTGTGACATTTTCACATGACCCTTGGAATAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS CCA 72 bp | GAGGTCCTTAGTGGAGATCTTCAGGGAGGGTTGTGTTaGGATCACTTCAGTGTGATTATTCCAAGGGTCATG | + |
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Preference number: 6 (lower is better) Translates to: EVLSGDLQGGLC*DHFSVIIPRVM Trigger: CATGACCCTTGGAATAATCACACTGAAGTGATCCCAACACAACCCTCCCTGAAGATCTCCACTAAGGACCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS GCA 72 bp | TATGATAGTCAGGGCACTTGCAAGGAGGATCAGCAATaGAGCAGACACAGAGATTCCAATATAGAGGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: YDSQGTCKEDQQ*SRHRDSNIEVL Trigger: AAGGACCTCTATATTGGAATCTCTGTGTCTGCTGCATTGCTGATCCTCCTTGCAAGTGCCCTGACTATCATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS GCA 72 bp | TTTTCTGTGTCTGCACTTTATGATAGTCAGGGCACTTaGAAGGAGGATCAGCAATGCAGCAGACACAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: FSVSALYDSQGT*KEDQQCSRHRD Trigger: ATCTCTGTGTCTGCTGCATTGCTGATCCTCCTTGCAAGTGCCCTGACTATCATAAAGTGCAGACACAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS TCA 72 bp | ATCTTCAGGGAGGGTTGTGTTGGGATCACTTCAGTGTaGTTATTCCAAGGGTCATGTGAAAATGTCACAGTG | + |
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Preference number: 6 (lower is better) Translates to: IFREGCVGITSV*LFQGSCENVTV Trigger: CACTGTGACATTTTCACATGACCCTTGGAATAATCACACTGAAGTGATCCCAACACAACCCTCCCTGAAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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| CDS GCA 72 bp | GATAATGTCGACAGTGTCTACAGCTTCGGGTTGCTCTaGACTTTGAAAAACTTCATTCTGAAATCCATGGAA | + |
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Preference number: 6 (lower is better) Translates to: DNVDSVYSFGLL*TLKNFILKSME Trigger: TTCCATGGATTTCAGAATGAAGTTTTTCAAAGTGCAGAGCAACCCGAAGCTGTAGACACTGTCGACATTATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077173.13 ENSMUST00000109227.2 |
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