RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DPP6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061576

Ensembl transcript IDs: ENSMUST00000071500.13, ENSMUST00000101471.4, ENSMUST00000120555.8, ENSMUST00000122171.8, ENSMUST00000148039.8

Found 462 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGAGGCCTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTaGTTCCCATGGTGCAGCTCTGTCAGACAGGAAGCCAGACAGGAC +
Preference number: 1 (lower is better)
Translates to: ERPGMSGHCGDNHAV*FPWCSSVRQEARQD
Trigger: GTCCTGTCTGGCTTCCTGTCTGACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAGGCCTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR GCA 90 bp CAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGAGACAACCATaGTGTCTGGTTCCCATGGTGCAGCTCTGTCAGACAGGAAGCCAG +
Preference number: 1 (lower is better)
Translates to: QQREAWHVWALRRQP*CLVPMVQLCQTGSQ
Trigger: CTGGCTTCCTGTCTGACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 90 bp TTGGTGCCCACCACCAAATGGCCTTCAATATGGAGACACATGCTATaGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGGGAGGGTG +
Preference number: 1 (lower is better)
Translates to: LVPTTKWPSIWRHML*NARTSTPTALGGRV
Trigger: CACCCTCCCTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGGCCATTTGGTGGTGGGCACCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 90 bp CCCGTCCCTTCCTGCAGCCAAAGCTGGCTCCCCTTTCAGGTCTCCTaGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACAC +
Preference number: 1 (lower is better)
Translates to: PVPSCSQSWLPFQVS*ALPLAKPVEVVKAH
Trigger: GTGTGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAAGGGGAGCCAGCTTTGGCTGCAGGAAGGGACGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 90 bp GGACTCACAGGTAGGAACAGGAACGCGGTGCGTGAGTGCAAACGGTaGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGT +
Preference number: 1 (lower is better)
Translates to: GLTGRNRNAVRECKR*GSRLQRESLNLRAC
Trigger: ACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGTTTGCACTCACGCACCGCGTTCCTGTTCCTACCTGTGAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR GCA 90 bp AGCCAGACAGGACTCACAGGTAGGAACAGGAACGCGGTGCGTGAGTaGAAACGGTGGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTA +
Preference number: 1 (lower is better)
Translates to: SQTGLTGRNRNAVRE*KRWGSRLQRESLNL
Trigger: TAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGTTTGCACTCACGCACCGCGTTCCTGTTCCTACCTGTGAGTCCTGTCTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 90 bp TGGGGGAGAATGGGTAGCAGTTGTAAGGACACATGTGATGGGTGGTaGAGTCACAGGCAAGTCCTAGATAGACCCAGGGGACAGAAGGTT +
Preference number: 1 (lower is better)
Translates to: WGRMGSSCKDTCDGW*SHRQVLDRPRGQKV
Trigger: AACCTTCTGTCCCCTGGGTCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 90 bp GATTGGGGGAGAATGGGTAGCAGTTGTAAGGACACATGTGATGGGTaGTGGAGTCACAGGCAAGTCCTAGATAGACCCAGGGGACAGAAG +
Preference number: 1 (lower is better)
Translates to: DWGRMGSSCKDTCDG*WSHRQVLDRPRGQK
Trigger: CTTCTGTCCCCTGGGTCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCAATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 90 bp GTGTCTGCATGCAAGCTCAACACAAGGTTAGTGCCTCAGCAGGGGTaGGGCTGCACAGACGCCAGACACGTGTTTCTTGCTTTATATACA +
Preference number: 1 (lower is better)
Translates to: VSACKLNTRLVPQQG*GCTDARHVFLALYT
Trigger: TGTATATAAAGCAAGAAACACGTGTCTGGCGTCTGTGCAGCCCCACCCCTGCTGAGGCACTAACCTTGTGTTGAGCTTGCATGCAGACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR TCA 90 bp GAGGACAGAGTTTCAGGATGCCCCAGAAGGAGTGGCCTGGGACAATaGAAACTCACATACAGGCCGTCAACAATCCCAAAAGGGAGAGTT +
Preference number: 1 (lower is better)
Translates to: EDRVSGCPRRSGLGQ*KLTYRPSTIPKGRV
Trigger: AACTCTCCCTTTTGGGATTGTTGACGGCCTGTATGTGAGTTTTCATTGTCCCAGGCCACTCCTTCTGGGGCATCCTGAAACTCTGTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR GCA 90 bp GCATGCAAGCTCAACACAAGGTTAGTGCCTCAGCAGGGGTGGGGCTaGACAGACGCCAGACACGTGTTTCTTGCTTTATATACAATGGAA +
Preference number: 1 (lower is better)
Translates to: ACKLNTRLVPQQGWG*TDARHVFLALYTME
Trigger: TTCCATTGTATATAAAGCAAGAAACACGTGTCTGGCGTCTGTGCAGCCCCACCCCTGCTGAGGCACTAACCTTGTGTTGAGCTTGCATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR GCA 90 bp CACACTCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTaGCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAACA +
Preference number: 1 (lower is better)
Translates to: HTLSGLGPFSPMPMH*LWRAQLTTLPTDLT
Trigger: TGTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGAGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 90 bp CTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATaGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAACAAGAACC +
Preference number: 1 (lower is better)
Translates to: LSGLGPFSPMPMHCL*RAQLTTLPTDLTRT
Trigger: GGTTCTTGTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR GCA 90 bp GAGAGCCCAGCTTACAACTCTTCCAACAGACCTAACAAGAACCAATaGTCCAAGCTCATGTGCACAGAACCAAAGCCCCCAAACATCAAC +
Preference number: 1 (lower is better)
Translates to: ESPAYNSSNRPNKNQ*SKLMCTEPKPPNIN
Trigger: GTTGATGTTTGGGGGCTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 90 bp CCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTTTaGGGAGGCCAGATCAGCCAGAGAGGTGTCTGCATGCAAGCTCAA +
Preference number: 1 (lower is better)
Translates to: PKGRVSDWYISNWHF*GGQISQRGVCMQAQ
Trigger: TTGAGCTTGCATGCAGACACCTCTCTGGCTGATCTGGCCTCCCCAAAAGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 90 bp AAGCAAATGTCACCTGAAAAGACTGATCAACTGATTGGGGGAGAATaGGTAGCAGTTGTAAGGACACATGTGATGGGTGGTGGAGTCACA +
Preference number: 1 (lower is better)
Translates to: KQMSPEKTDQLIGGE*VAVVRTHVMGGGVT
Trigger: TGTGACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCAATCAGTTGATCAGTCTTTTCAGGTGACATTTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR TCA 90 bp TGCACAGACGCCAGACACGTGTTTCTTGCTTTATATACAATGGAATaGAATATACACGGTGACAGTGGTCACACATCTGGTCAGTGTGTA +
Preference number: 1 (lower is better)
Translates to: CTDARHVFLALYTME*NIHGDSGHTSGQCV
Trigger: TACACACTGACCAGATGTGTGACCACTGTCACCGTGTATATTTCATTCCATTGTATATAAAGCAAGAAACACGTGTCTGGCGTCTGTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp TTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCCACCTCCACTCCCACTaGCCTTGGAGGGAGGGTGGT +
Preference number: 2 (lower is better)
Translates to: LGEGHGMCQSLGARSRPCHLHSH*PWREGG
Trigger: ACCACCCTCCCTCCAAGGGCAGTGGGAGTGGAGGTG...GCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp TTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCCAGGAACGCGGTGCGTaGGTGCAAACGGTGGGGCTC +
Preference number: 2 (lower is better)
Translates to: LGTVEAFLTTERGLACLGQERGA*VQTVGL
Trigger: GAGCCCCACCGTTTGCACTCACGCACCGCGTTCCTG...GCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp AGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGAGAGGGACATGGGATGTaGCAGTCACTGGGGGCCAGG +
Preference number: 2 (lower is better)
Translates to: SGGFSNNRERPGMSGHCGEGHGM*QSLGAR
Trigger: CCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTC...TCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp ATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGGTGCCCACCACCAAATaGCCTTCAATATGGAGACAC +
Preference number: 2 (lower is better)
Translates to: MGCASHWGPGVGHAAEVGVPTTK*PSIWRH
Trigger: GTGTCTCCATATTGAAGGCCATTTGGTGGTGGGCAC...CCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TCTGTCAGACAGGAAGCCAGACAGGACTCACAGGTAGGAACAGGAACGCGGTGCGGATGTGCCAGTCACTaGGGGCCAGGAGTAGGCCAT +
Preference number: 2 (lower is better)
Translates to: SVRQEARQDSQVGTGTRCGCASH*GPGVGH
Trigger: ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCC...GCACCGCGTTCCTGTTCCTACCTGTGAGTCCTGTCTGGCTTCCTGTCTGACAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CAA 90 bp GTACCTTACAGTGCTGATGCGGTTGGAGGAAGCTCACCAACCTCGTaGTCAGAGCAGGAGGGAGGAGCCATCTCTGGGGCTGGTGTTGAC +
Preference number: 2 (lower is better)
Translates to: VPYSADAVGGSSPTS*SEQEGGAISGAGVD
Trigger: GTCAACACCAGCCCCAGAGATGGCTCCTCCCTCCTGCTCTGACAACGAGGTTGGTGAGCTTCCTCCAACCGCATCAGCACTGTAAGGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp TGTTTTATTCCATGGATGACAGACGCTACCATGCCACATCCCCGAAGCCTTCCCCAGGAACGCGGTGCGTaGGTGCAAACGGTGGGGCTC +
Preference number: 2 (lower is better)
Translates to: CFIPWMTDATMPHPRSLPQERGA*VQTVGL
Trigger: GAGCCCCACCGTTTGCACTCACGCACCGCGTTCCTG...GGGAAGGCTTCGGGGATGTGGCATGGTAGCGTCTGTCATCCATGGAATAAAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAAGGCGGTGTGGTGACTaGTTTCAACCTGGAGCTTGG +
Preference number: 2 (lower is better)
Translates to: LACLGTAETTMLSGSHGARRCGD*FQPGAW
Trigger: CCAAGCTCCAGGTTGAAACCAGTCACCACACCGCCT...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCGTGCCTCAGCAGGGGTaGGGCTGCACAGACGCCAGA +
Preference number: 2 (lower is better)
Translates to: SVRTRSLLSNANALPMESVPQQG*GCTDAR
Trigger: TCTGGCGTCTGTGCAGCCCCACCCCTGCTGAGGCAC...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp TTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCAGTAGGCCATGCTGCTaGGGTGGGGTTGTTCCAGGC +
Preference number: 2 (lower is better)
Translates to: LGTVEAFLTTERGLACLGSRPCC*GGVVPG
Trigger: GCCTGGAACAACCCCACCTCAGCAGCATGGCCTACT...GCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp ATTGGGGGAGAATGGGTAGCAGTTGTAAGGACACATGTGATGGGTGGTGGAGTCCACCTCCACTCCCACTaGCCTTGGAGGGAGGGTGGT +
Preference number: 2 (lower is better)
Translates to: IGGEWVAVVRTHVMGGGVHLHSH*PWREGG
Trigger: ACCACCCTCCCTCCAAGGGCAGTGGGAGTGGAGGTG...GACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TCTGTCAGACAGGAAGCCAGACAGGACTCACAGGTAGGAACAGGAACGCGGTGCGGAGGGTGGTGGTGGTaGGGATTCCTCAGTTGCATA +
Preference number: 2 (lower is better)
Translates to: SVRQEARQDSQVGTGTRCGGWWW*GFLSCI
Trigger: TATGCAACTGAGGAATCCCCACCACCACCACCCTCC...GCACCGCGTTCCTGTTCCTACCTGTGAGTCCTGTCTGGCTTCCTGTCTGACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGGGATGTGCCAGTCACTaGGGGCCAGGAGTAGGCCAT +
Preference number: 2 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGGCASH*GPGVGH
Trigger: ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCC...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CAA 90 bp GGTTCAAAGTATGCCCTTACTGTCATCTGTCCTTTGCTTTGTCCCTaGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGT +
Preference number: 2 (lower is better)
Translates to: GSKYALTVICPLLCP*GEGHGMCQSLGARS
Trigger: ACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGGGACAAAGCAAAGGACAGATGACAGTAAGGGCATACTTTGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCAGTAGGCCATGCTGCTaGGGTGGGGTTGTTCCAGGC +
Preference number: 2 (lower is better)
Translates to: SVRTRSLLSNANALPMESSRPCC*GGVVPG
Trigger: GCCTGGAACAACCCCACCTCAGCAGCATGGCCTACT...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp ATTGGGGGAGAATGGGTAGCAGTTGTAAGGACACATGTGATGGGTGGTGGAGTCCTTGGGGGAGGGACATaGGATGTGCCAGTCACTGGG +
Preference number: 2 (lower is better)
Translates to: IGGEWVAVVRTHVMGGGVLGGGT*DVPVTG
Trigger: CCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAG...GACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp CCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGACACCTCCACTCCCACTaGCCTTGGAGGGAGGGTGGT +
Preference number: 2 (lower is better)
Translates to: PVFWVQLGTVEAFLTTERHLHSH*PWREGG
Trigger: ACCACCCTCCCTCCAAGGGCAGTGGGAGTGGAGGTG...TCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp TGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAACAAGAACCAATGCTCCACACCTCCACTCCCACTaGCCTTGGAGGGAGGGTGGT +
Preference number: 2 (lower is better)
Translates to: WRAQLTTLPTDLTRTNAPHLHSH*PWREGG
Trigger: ACCACCCTCCCTCCAAGGGCAGTGGGAGTGGAGGTG...TGGAGCATTGGTTCTTGTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCGGAGGGTGGTGGTGGTaGGGATTCCTCAGTTGCATA +
Preference number: 2 (lower is better)
Translates to: LGTVEAFLTTERGLACLGGGWWW*GFLSCI
Trigger: TATGCAACTGAGGAATCCCCACCACCACCACCCTCC...GCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCAAAAGACCTGTTTTCTaGGTGCAGTTAGGGACAGTG +
Preference number: 2 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCKRPVF*VQLGTV
Trigger: CACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTT...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCTGACTGACTTTCAGTaGGAGCTGCTAGGCGCTCTG +
Preference number: 2 (lower is better)
Translates to: SVRTRSLLSNANALPMESLTDFQ*ELLGAL
Trigger: CAGAGCGCCTAGCAGCTCTCACTGAAAGTCAGTCAG...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCACTTGGGTTCAAAGTATaGCCTTACTGTCATCTGTCC +
Preference number: 2 (lower is better)
Translates to: LACLGTAETTMLSGSHGALGFKV*PYCHLS
Trigger: GGACAGATGACAGTAAGGGCATACTTTGAACCCAAG...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCCTTGGGTTCAAAGTATaGCCTTACTGTCATCTGTCC +
Preference number: 2 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVLGFKV*PYCHLS
Trigger: GGACAGATGACAGTAAGGGCATACTTTGAACCCAAG...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAACAAGAACCAATGCTCCACTTGGGGGAGGGACATaGGATGTGCCAGTCACTGGG +
Preference number: 2 (lower is better)
Translates to: WRAQLTTLPTDLTRTNAPLGGGT*DVPVTG
Trigger: CCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAG...TGGAGCATTGGTTCTTGTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp CACACTGCCTGTGGGATACTCATGATGTTGGCTTATTTGGCAAACCTAGGAGTGCTTGGGGGAGGGACATaGGATGTGCCAGTCACTGGG +
Preference number: 2 (lower is better)
Translates to: HTACGILMMLAYLANLGVLGGGT*DVPVTG
Trigger: CCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAG...CACTCCTAGGTTTGCCAAATAAGCCAACATCATGAGTATCCCACAGGCAGTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAACAGAGAGAGGCCTaGCATGTCTGGGCACTGCGG +
Preference number: 2 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQQQREA*HVWALR
Trigger: CCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTG...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCGTCTGGTTCCCATGGTaGAGCTCTGTCAGACAGGAA +
Preference number: 2 (lower is better)
Translates to: SVRTRSLLSNANALPMESVWFPW*SSVRQE
Trigger: TTCCTGTCTGACAGAGCTGCACCATGGGAACCAGAC...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCGGATGTGCCAGTCACTaGGGGCCAGGAGTAGGCCAT +
Preference number: 2 (lower is better)
Translates to: GSRLQRESLNLRACFLGFGCASH*GPGVGH
Trigger: ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCC...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCCTTGGGGGAGGGACATaGGATGTGCCAGTCACTGGG +
Preference number: 2 (lower is better)
Translates to: GSRLQRESLNLRACFLGFLGGGT*DVPVTG
Trigger: CCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAG...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCAGAGGCCTGGCATGTCTaGGCACTGCGGAGACAACCA +
Preference number: 2 (lower is better)
Translates to: FQVSWALPLAKPVEVVKAEAWHV*ALRRQP
Trigger: TGGTTGTCTCCGCAGTGCCCAGACATGCCAGGCCTC...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CAA 90 bp GCACACTCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATaGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAAC +
Preference number: 2 (lower is better)
Translates to: AHSVRTRSLLSNANA*PMESPAYNSSNRPN
Trigger: GTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGAGTGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTAGTAGGCCATGCTGCTaGGGTGGGGTTGTTCCAGGC +
Preference number: 2 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEASRPCC*GGVVPG
Trigger: GCCTGGAACAACCCCACCTCAGCAGCATGGCCTACT...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp ATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAGAGAGAAACTCAGAGTaGGACAGTCCAGGGTGGGAG +
Preference number: 2 (lower is better)
Translates to: MPMHCLWRAQLTTLPTDLERNSE*DSPGWE
Trigger: CTCCCACCCTGGACTGTCTCACTCTGAGTTTCTCTC...TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp GGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTCTTGGGTTCAAAGTATaGCCTTACTGTCATCTGTCC +
Preference number: 2 (lower is better)
Translates to: GTVEAFLTTERGLACLGTLGFKV*PYCHLS
Trigger: GGACAGATGACAGTAAGGGCATACTTTGAACCCAAG...AGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp ATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTACTGCGGAGACAACCATaGTGTCTGGTTCCCATGGTG +
Preference number: 2 (lower is better)
Translates to: MPMHCLWRAQLTTLPTDLLRRQP*CLVPMV
Trigger: CACCATGGGAACCAGACAGCATGGTTGTCTCCGCAG...TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCGTGCCCACCACCAAATaGCCTTCAATATGGAGACAC +
Preference number: 2 (lower is better)
Translates to: SVRTRSLLSNANALPMESVPTTK*PSIWRH
Trigger: GTGTCTCCATATTGAAGGCCATTTGGTGGTGGGCAC...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp GGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTGTGCCCACCACCAAATaGCCTTCAATATGGAGACAC +
Preference number: 2 (lower is better)
Translates to: GPFSPMPMHCLWRAQLTTVPTTK*PSIWRH
Trigger: GTGTCTCCATATTGAAGGCCATTTGGTGGTGGGCAC...AGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp AGTTGTAAGGACACATGTGATGGGTGGTGGAGTCACAGGCAAGTCCTAGATAGAAGGCGGTGTGGTGACTaGTTTCAACCTGGAGCTTGG +
Preference number: 2 (lower is better)
Translates to: SCKDTCDGWWSHRQVLDRRRCGD*FQPGAW
Trigger: CCAAGCTCCAGGTTGAAACCAGTCACCACACCGCCT...TCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CAA 90 bp TGCCTCAGCAGGGGTGGGGCTGCACAGACGCCAGACACGTGTTTCTaGCTTTATATACAATGGAATGAAATATACACGGTGACAGTGGTC +
Preference number: 2 (lower is better)
Translates to: CLSRGGAAQTPDTCF*LYIQWNEIYTVTVV
Trigger: GACCACTGTCACCGTGTATATTTCATTCCATTGTATATAAAGCAAGAAACACGTGTCTGGCGTCTGTGCAGCCCCACCCCTGCTGAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp TCCAACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTGCACAGAACCAAAGGACAGAGTTTCAGGATaGCCCAGAAGGAGTGGCCTG +
Preference number: 2 (lower is better)
Translates to: SNRPNKNQCSKLMCTEPKDRVSG*PRRSGL
Trigger: CAGGCCACTCCTTCTGGGGCATCCTGAAACTCTGTC...CTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAAAATGGCCTTCAATATaGAGACACATGCTATGGAAT +
Preference number: 2 (lower is better)
Translates to: LACLGTAETTMLSGSHGAKWPSI*RHMLWN
Trigger: ATTCCATAGCATGTGTCTCCATATTGAAGGCCATTT...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp AGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGAAAGGGCCTGTTTTCTTaGGTTCAAAGTATGCCCTTA +
Preference number: 2 (lower is better)
Translates to: SGGFSNNRERPGMSGHCGKGLFS*VQSMPL
Trigger: TAAGGGCATACTTTGAACCCAAGAAAACAGGCCCTT...TCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp GGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTAAGGGCCTGTTTTCTTaGGTTCAAAGTATGCCCTTA +
Preference number: 2 (lower is better)
Translates to: GTVEAFLTTERGLACLGTKGLFS*VQSMPL
Trigger: TAAGGGCATACTTTGAACCCAAGAAAACAGGCCCTT...AGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCTGATTGGGGGAGAATaGGTAGCAGTTGTAAGGACA +
Preference number: 2 (lower is better)
Translates to: SVRTRSLLSNANALPMESLIGGE*VAVVRT
Trigger: TGTCCTTACAACTGCTACCCATTCTCCCCCAATCAG...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CAA 90 bp GTGCGTGAGTGCAAACGGTGGGGCTCAAGGTTACAGAGAGAAAGCTaGAACTTAAGGGCCTGTTTTCTTGGGTTCAAAGTATGCCCTTAC +
Preference number: 2 (lower is better)
Translates to: VRECKRWGSRLQRES*NLRACFLGFKVCPY
Trigger: GTAAGGGCATACTTTGAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGTTTGCACTCACGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp TCCAACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTGCACAGAACCAAAGTGTACCTTACAGTGCTaGTGCGGTTGGAGGAAGCTC +
Preference number: 2 (lower is better)
Translates to: SNRPNKNQCSKLMCTEPKCTLQC*CGWRKL
Trigger: GAGCTTCCTCCAACCGCATCAGCACTGTAAGGTACA...CTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp TCCAACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTGCACAGAACCAAAGAGTGGCCTGGGACAATaGAAACTCACATACAGGCCG +
Preference number: 2 (lower is better)
Translates to: SNRPNKNQCSKLMCTEPKSGLGQ*KLTYRP
Trigger: CGGCCTGTATGTGAGTTTTCATTGTCCCAGGCCACT...CTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTGGAGGGTGGTGGTGGTaGGGATTCCTCAGTTGCATA +
Preference number: 2 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEAGGWWW*GFLSCI
Trigger: TATGCAACTGAGGAATCCCCACCACCACCACCCTCC...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp ATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAGTGCCCACCACCAAATaGCCTTCAATATGGAGACAC +
Preference number: 2 (lower is better)
Translates to: MPMHCLWRAQLTTLPTDLVPTTK*PSIWRH
Trigger: GTGTCTCCATATTGAAGGCCATTTGGTGGTGGGCAC...TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTAGGCGGTGTGGTGACTaGTTTCAACCTGGAGCTTGG +
Preference number: 2 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEARRCGD*FQPGAW
Trigger: CCAAGCTCCAGGTTGAAACCAGTCACCACACCGCCT...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp CGTCAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTGAGGCCTGGCATGTCTaGGCACTGCGGAGACAACCA +
Preference number: 2 (lower is better)
Translates to: RQQSQKGELVIGIFQTGTEAWHV*ALRRQP
Trigger: TGGTTGTCTCCGCAGTGCCCAGACATGCCAGGCCTC...AGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp TGCCTCTGGGTCATGGATTTTGAAGTCTTCACTGAAGAGATCTTCCACAGTCACGGTCAACAGGATGACTaGGGTGACAATCAGAGAGCA +
Preference number: 2 (lower is better)
Translates to: CLWVMDFEVFTEEIFHSHGQQDD*GDNQRA
Trigger: TGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACC...GTGACTGTGGAAGATCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148039.8
3UTR-3UTR CCA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCAACATGTGATGGGTGGTaGAGTCACAGGCAAGTCCTA +
Preference number: 2 (lower is better)
Translates to: FQVSWALPLAKPVEVVKATCDGW*SHRQVL
Trigger: TAGGACTTGCCTGTGACTCCACCACCCATCACATGT...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp CCACTTTGCCTCTGGGTCATGGATTTTGAAGTCTTCACTGAAGAGATCTTCCACTTTCCAGTTCCTCTGTaGAGGATTACTCCCCACCAG +
Preference number: 2 (lower is better)
Translates to: PLCLWVMDFEVFTEEIFHFPVPL*RITPHQ
Trigger: CTGGTGGGGAGTAATCCTCCACAGAGGAACTGGAAA...GTGGAAGATCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148039.8
3UTR-3UTR TCA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAAGAAGGTTTTACTGACTaGCTTTCAGTGAGAGCTGCT +
Preference number: 2 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQEGFTD*LSVRAA
Trigger: AGCAGCTCTCACTGAAAGTCAGTCAGTAAAACCTTC...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAAATGAAATATACACGGTaGCAGTGGTCACACATCTGG +
Preference number: 2 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQMKYTR*QWSHIW
Trigger: CCAGATGTGTGACCACTGTCACCGTGTATATTTCAT...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp GTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACACTCTCCTAACAAGAACCAATaGTCCAAGCTCATGTGCACA +
Preference number: 2 (lower is better)
Translates to: VSWALPLAKPVEVVKAHSPNKNQ*SKLMCT
Trigger: TGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGG...AGAGTGTGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp ATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAAAGGGCCTGTTTTCTTaGGTTCAAAGTATGCCCTTA +
Preference number: 2 (lower is better)
Translates to: MPMHCLWRAQLTTLPTDLKGLFS*VQSMPL
Trigger: TAAGGGCATACTTTGAACCCAAGAAAACAGGCCCTT...TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR TCA 90 bp CAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTTTGAGAGAAACTCAGAGTaGGACAGTCCAGGGTGGGAG +
Preference number: 2 (lower is better)
Translates to: QQSQKGELVIGIFQTGTFERNSE*DSPGWE
Trigger: CTCCCACCCTGGACTGTCTCACTCTGAGTTTCTCTC...AAAAGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR GCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTCTTGGGTTCAAAGTATaGCCTTACTGTCATCTGTCC +
Preference number: 2 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEALGFKV*PYCHLS
Trigger: GGACAGATGACAGTAAGGGCATACTTTGAACCCAAG...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCAGGGAGAGTTAGTGATTaGTATATTTCAAACTGGCAC +
Preference number: 2 (lower is better)
Translates to: FQVSWALPLAKPVEVVKAGRVSD*YISNWH
Trigger: GTGCCAGTTTGAAATATACCAATCACTAACTCTCCC...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CCA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCAAAATGGCCTTCAATATaGAGACACATGCTATGGAAT +
Preference number: 2 (lower is better)
Translates to: FQVSWALPLAKPVEVVKAKWPSI*RHMLWN
Trigger: ATTCCATAGCATGTGTCTCCATATTGAAGGCCATTT...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR TCA 72 bp TGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTaGGGTGGGGTTGTTCCAGGCGGTGTGGTGACTGGT +
Preference number: 3 (lower is better)
Translates to: CQSLGARSRPCC*GGVVPGGVVTG
Trigger: ACCAGTCACCACACCGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACTGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp GGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTCCACTCCCACTGCCCTaGGAGGGAGGGTGGTGGTGG +
Preference number: 3 (lower is better)
Translates to: GTVEAFLTTERGLACLGTPLPLP*EGGWWW
Trigger: CCACCACCACCCTCCCTCCAAGGGCAGTGGGAGTGG...AGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCCACTCCCACTGCCCTaGGAGGGAGGGTGGTGGTGG +
Preference number: 3 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGPLPLP*EGGWWW
Trigger: CCACCACCACCCTCCCTCCAAGGGCAGTGGGAGTGG...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR GCA 72 bp GAGGCCTGGCATGTCTGGGCACTGCGGAGACAACCATaGTGTCTGGTTCCCATGGTGCAGCTCTGTCAGACA +
Preference number: 3 (lower is better)
Translates to: EAWHVWALRRQP*CLVPMVQLCQT
Trigger: TGTCTGACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAGGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp GGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATaGTGCAGCTCTGTCAGACAGGAAGCCAGACAGGAC +
Preference number: 3 (lower is better)
Translates to: GHCGDNHAVWFP*CSSVRQEARQD
Trigger: GTCCTGTCTGGCTTCCTGTCTGACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACCACTCCCACTGCCCTaGGAGGGAGGGTGGTGGTGG +
Preference number: 3 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQPLPLP*EGGWWW
Trigger: CCACCACCACCCTCCCTCCAAGGGCAGTGGGAGTGG...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR GCA 72 bp TGCCCACCACCAAATGGCCTTCAATATGGAGACACATaGTATGGAATGCCCGCACCTCCACTCCCACTGCCC +
Preference number: 3 (lower is better)
Translates to: CPPPNGLQYGDT*YGMPAPPLPLP
Trigger: GGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGGCCATTTGGTGGTGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp TGCAAGCTCAACACAAGGTTAGTGCCTCAGCAGGGGTaGGGCTGCACAGACGCCAGACACGTGTTTCTTGCT +
Preference number: 3 (lower is better)
Translates to: CKLNTRLVPQQG*GCTDARHVFLA
Trigger: AGCAAGAAACACGTGTCTGGCGTCTGTGCAGCCCCACCCCTGCTGAGGCACTAACCTTGTGTTGAGCTTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR GCA 72 bp CAAATGGCCTTCAATATGGAGACACATGCTATGGAATaGCCGCACCTCCACTCCCACTGCCCTTGGAGGGAG +
Preference number: 3 (lower is better)
Translates to: QMAFNMETHAME*PHLHSHCPWRE
Trigger: CTCCCTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGGCCATTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp ACCACCAAATGGCCTTCAATATGGAGACACATGCTATaGAATGCCCGCACCTCCACTCCCACTGCCCTTGGA +
Preference number: 3 (lower is better)
Translates to: TTKWPSIWRHML*NARTSTPTALG
Trigger: TCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGGCCATTTGGTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp TGTTTTATTCCATGGATGACAGACGCTACCATGCCACATCCCCGAAGCCTTCCCCATCTGTCCTTTGCTTaGTCCCTTGGGGGAGGGACA +
Preference number: 3 (lower is better)
Translates to: CFIPWMTDATMPHPRSLPHLSFA*SLGGGT
Trigger: TGTCCCTCCCCCAAGGGACAAAGCAAAGGACAGATG...GGGAAGGCTTCGGGGATGTGGCATGGTAGCGTCTGTCATCCATGGAATAAAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp TGTTTTATTCCATGGATGACAGACGCTACCATGCCACATCCCCGAAGCCTTCCCACAGTGCTGATGCGGTaGGAGGAAGCTCACCAACCT +
Preference number: 3 (lower is better)
Translates to: CFIPWMTDATMPHPRSLPTVLMR*EEAHQP
Trigger: AGGTTGGTGAGCTTCCTCCAACCGCATCAGCACTGT...GGGAAGGCTTCGGGGATGTGGCATGGTAGCGTCTGTCATCCATGGAATAAAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR TCA 72 bp CCCAGGGGACAGAAGGTTTTACTGACTGACTTTCAGTaGGAGCTGCTAGGCGCTCTGTGTCCTTGGTGTCTT +
Preference number: 3 (lower is better)
Translates to: PRGQKVLLTDFQ*ELLGALCPWCL
Trigger: AAGACACCAAGGACACAGAGCGCCTAGCAGCTCTCACTGAAAGTCAGTCAGTAAAACCTTCTGTCCCCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp GGTAGGAACAGGAACGCGGTGCGTGAGTGCAAACGGTaGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTA +
Preference number: 3 (lower is better)
Translates to: GRNRNAVRECKR*GSRLQRESLNL
Trigger: TAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGTTTGCACTCACGCACCGCGTTCCTGTTCCTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp ATGGGTAGCAGTTGTAAGGACACATGTGATGGGTGGTaGAGTCACAGGCAAGTCCTAGATAGACCCAGGGGA +
Preference number: 3 (lower is better)
Translates to: MGSSCKDTCDGW*SHRQVLDRPRG
Trigger: TCCCCTGGGTCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCTTACAGAGAGAAAGCTaGAACTTAAGGGCCTGTTTT +
Preference number: 3 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVLQRES*NLRACF
Trigger: AAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAA...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAAACAGTGCTGATGCGGTaGGAGGAAGCTCACCAACCT +
Preference number: 3 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQTVLMR*EEAHQP
Trigger: AGGTTGGTGAGCTTCCTCCAACCGCATCAGCACTGT...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp CTGGTTTCAACCTGGAGCTTGGTGCCCACCACCAAATaGCCTTCAATATGGAGACACATGCTATGGAATGCC +
Preference number: 3 (lower is better)
Translates to: LVSTWSLVPTTK*PSIWRHMLWNA
Trigger: GGCATTCCATAGCATGTGTCTCCATATTGAAGGCCATTTGGTGGTGGGCACCAAGCTCCAGGTTGAAACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp AGAATGGGTAGCAGTTGTAAGGACACATGTGATGGGTaGTGGAGTCACAGGCAAGTCCTAGATAGACCCAGG +
Preference number: 3 (lower is better)
Translates to: RMGSSCKDTCDG*WSHRQVLDRPR
Trigger: CCTGGGTCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp AGGACAGAGTTTCAGGATGCCCCAGAAGGAGTGGCCTaGGACAATGAAAACTCACATACAGGCCGTCAACAA +
Preference number: 3 (lower is better)
Translates to: RTEFQDAPEGVA*DNENSHTGRQQ
Trigger: TTGTTGACGGCCTGTATGTGAGTTTTCATTGTCCCAGGCCACTCCTTCTGGGGCATCCTGAAACTCTGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCCATCTGTCCTTTGCTTaGTCCCTTGGGGGAGGGACA +
Preference number: 3 (lower is better)
Translates to: GSRLQRESLNLRACFLGFHLSFA*SLGGGT
Trigger: TGTCCCTCCCCCAAGGGACAAAGCAAAGGACAGATG...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp TCTGTCAGACAGGAAGCCAGACAGGACTCACAGGTAGGAACAGGAACGCGGTGCTTACAGAGAGAAAGCTaGAACTTAAGGGCCTGTTTT +
Preference number: 3 (lower is better)
Translates to: SVRQEARQDSQVGTGTRCLQRES*NLRACF
Trigger: AAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAA...GCACCGCGTTCCTGTTCCTACCTGTGAGTCCTGTCTGGCTTCCTGTCTGACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR TCA 72 bp GTTTCAGGATGCCCCAGAAGGAGTGGCCTGGGACAATaGAAACTCACATACAGGCCGTCAACAATCCCAAAA +
Preference number: 3 (lower is better)
Translates to: VSGCPRRSGLGQ*KLTYRPSTIPK
Trigger: TTTTGGGATTGTTGACGGCCTGTATGTGAGTTTTCATTGTCCCAGGCCACTCCTTCTGGGGCATCCTGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR GCA 72 bp TCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTaGCTATGGAGAGCCCAGCTTACAACTCTTCCAACA +
Preference number: 3 (lower is better)
Translates to: SGLGPFSPMPMH*LWRAQLTTLPT
Trigger: TGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp GCTGGTGTTGACAGGAGTGGAAGACCACACTGCCTGTaGGATACTCATGATGTTGGCTTATTTGGCAAACCT +
Preference number: 3 (lower is better)
Translates to: AGVDRSGRPHCL*DTHDVGLFGKP
Trigger: AGGTTTGCCAAATAAGCCAACATCATGAGTATCCCACAGGCAGTGTGGTCTTCCACTCCTGTCAACACCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp CTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATaGAGAGCCCAGCTTACAACTCTTCCAACAGACCTA +
Preference number: 3 (lower is better)
Translates to: LGPFSPMPMHCL*RAQLTTLPTDL
Trigger: TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCTTACAGAGAGAAAGCTaGAACTTAAGGGCCTGTTTT +
Preference number: 3 (lower is better)
Translates to: SVRTRSLLSNANALPMESLQRES*NLRACF
Trigger: AAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAA...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp TCACCTGAAAAGACTGATCAACTGATTGGGGGAGAATaGGTAGCAGTTGTAAGGACACATGTGATGGGTGGT +
Preference number: 3 (lower is better)
Translates to: SPEKTDQLIGGE*VAVVRTHVMGG
Trigger: ACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCAATCAGTTGATCAGTCTTTTCAGGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp AGAGTTAGTGATTGGTATATTTCAAACTGGCACTTTTaGGGAGGCCAGATCAGCCAGAGAGGTGTCTGCATG +
Preference number: 3 (lower is better)
Translates to: RVSDWYISNWHF*GGQISQRGVCM
Trigger: CATGCAGACACCTCTCTGGCTGATCTGGCCTCCCCAAAAGTGCCAGTTTGAAATATACCAATCACTAACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR GCA 72 bp AACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTaGACAGAACCAAAGCCCCCAAACATCAACAACAAA +
Preference number: 3 (lower is better)
Translates to: NRPNKNQCSKLM*TEPKPPNINNK
Trigger: TTTGTTGTTGATGTTTGGGGGCTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CCA 72 bp ACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTaGGTTCAAAGTATGCCCTTACTGTCATCTGTCCTT +
Preference number: 3 (lower is better)
Translates to: TERKLELKGLFS*VQSMPLLSSVL
Trigger: AAGGACAGATGACAGTAAGGGCATACTTTGAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR-3UTR CAA 90 bp CGTCAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTATGATGTTGGCTTATTaGGCAAACCTAGGAGTGGAA +
Preference number: 3 (lower is better)
Translates to: RQQSQKGELVIGIFQTGTMMLAY*ANLGVE
Trigger: TTCCACTCCTAGGTTTGCCAAATAAGCCAACATCAT...AGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTGACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp AGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTTGTTCCAGGCGCTCGGCCGTCACACTTaGCCACCACGGCTCCATGGC +
Preference number: 4 (lower is better)
Translates to: SHWGPGVGHAAEVGLFQALGRHT*PPRLHG
Trigger: GCCATGGAGCCGTGGTGGTCAAGTGTGACGGCCGAG...CGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCCGGCCGTGGCGTGGATaGTCAGGAACTGCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: LGEGHGMCQSLGARSRPCRPWRG*SGTAGP
Trigger: AGGACCAGCAGTTCCTGATCATCCACGCCACGGCCG...GCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCACTCGGCCGTCACACTTaGCCACCACGGCTCCATGGC +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGALGRHT*PPRLHG
Trigger: GCCATGGAGCCGTGGTGGTCAAGTGTGACGGCCGAG...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCCTCGGCCGTCACACTTaGCCACCACGGCTCCATGGC +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVLGRHT*PPRLHG
Trigger: GCCATGGAGCCGTGGTGGTCAAGTGTGACGGCCGAG...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCCGGCCGTGGCGTGGATaGTCAGGAACTGCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCRPWRG*SGTAGP
Trigger: AGGACCAGCAGTTCCTGATCATCCACGCCACGGCCG...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAAGGAGCTTGGTTCCCTaGAAGCCGCTGCCTCGGCCG +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGARSLVP*KPLPRP
Trigger: CGGCCGAGGCAGCGGCTTCCAGGGAACCAAGCTCCT...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGCTTCCTGTAGGAGCTTaGTTCCCTGGAAGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: MGCASHWGPGVGHAAEVGLPVGA*FPGSRC
Trigger: GCAGCGGCTTCCAGGGAACCAAGCTCCTACAGGAAG...CCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp AGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTTGTTCCAGGCGGAAGCTTTGCGTTGCTaGCTTCTGGTGGGTCCAGAC +
Preference number: 4 (lower is better)
Translates to: SHWGPGVGHAAEVGLFQAEALRC*LLVGPD
Trigger: GTCTGGACCCACCAGAAGTCAGCAACGCAAAGCTTC...CGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCCTGGTCCTCCAGTGCTaGCACTCGGTGTGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCLVLQC*HSVCQL
Trigger: AAGCTGGCACACCGAGTGTCAGCACTGGAGGACCAG...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATTCACAGCGACCTTGGTaGTGGTGGCCCATTTCACCA +
Preference number: 4 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHSQRPW*WWPISP
Trigger: TGGTGAAATGGGCCACCAGCACCAAGGTCGCTGTGA...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTTGTTCCAGGCGGTTGCTGACTTCTGGTaGGTCCAGACTCTGAGGGTC +
Preference number: 4 (lower is better)
Translates to: SHWGPGVGHAAEVGLFQAVADFW*VQTLRV
Trigger: GACCCTCAGAGTCTGGACCCACCAGAAGTCAGCAAC...CGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTGCGTTGCTGACTTCTaGTGGGTCCAGACTCTGAGG +
Preference number: 4 (lower is better)
Translates to: MGCASHWGPGVGHAAEVGCVADF*WVQTLR
Trigger: CCTCAGAGTCTGGACCCACCAGAAGTCAGCAACGCA...CCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATTGCGTTGCTGACTTCTaGTGGGTCCAGACTCTGAGG +
Preference number: 4 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHCVADF*WVQTLR
Trigger: CCTCAGAGTCTGGACCCACCAGAAGTCAGCAACGCA...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTTGTTCCAGGCGATCATCTCCAGGTCGTaGGTGGGTCCATTCAAGCCG +
Preference number: 4 (lower is better)
Translates to: SHWGPGVGHAAEVGLFQAIISRS*VGPFKP
Trigger: CGGCTTGAATGGACCCACCCACGACCTGGAGATGAT...CGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATAGGTCACAGCGACCTTaGTGCTGGTGGCCCATTTCA +
Preference number: 4 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHRSQRP*CWWPIS
Trigger: TGAAATGGGCCACCAGCACCAAGGTCGCTGTGACCT...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATAGGATTGACACATTCTaGGCCCGGTTCAGCCAGGTC +
Preference number: 4 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHRIDTF*ARFSQV
Trigger: GACCTGGCTGAACCGGGCCCAGAATGTGTCAATCCT...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGAGGAGCTTGGTTCCCTaGAAGCCGCTGCCTCGGCCG +
Preference number: 4 (lower is better)
Translates to: YGDTCYGMPAPPLPLPLERSLVP*KPLPRP
Trigger: CGGCCGAGGCAGCGGCTTCCAGGGAACCAAGCTCCT...CTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCCAGGGCCTTCACACTTaGGCAGGAAGAAGTCCATGT +
Preference number: 4 (lower is better)
Translates to: LGEGHGMCQSLGARSRPCQGLHT*AGRSPC
Trigger: ACATGGACTTCTTCCTGCTCAAGTGTGAAGGCCCTG...GCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp AGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTTGTTCCAGGCGCAGGGCCTTCACACTTaGGCAGGAAGAAGTCCATGT +
Preference number: 4 (lower is better)
Translates to: SHWGPGVGHAAEVGLFQAQGLHT*AGRSPC
Trigger: ACATGGACTTCTTCCTGCTCAAGTGTGAAGGCCCTG...CGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCCTGGTCCTCCAGTGCTaGCACTCGGTGTGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVLVLQC*HSVCQL
Trigger: AAGCTGGCACACCGAGTGTCAGCACTGGAGGACCAG...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTGGATGATCAGGAACTaGTGGTCCTCCAGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: LGEGHGMCQSLGARSRPCWMIRN*WSSSAD
Trigger: GTCAGCACTGGAGGACCAGCAGTTCCTGATCATCCA...GCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCCTTCCTGTAGGAGCTTaGTTCCCTGGAAGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCLPVGA*FPGSRC
Trigger: GCAGCGGCTTCCAGGGAACCAAGCTCCTACAGGAAG...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CAA 72 bp AGTGCTGATGCGGTTGGAGGAAGCTCACCAACCTCGTaGTCAGAGCAGGAGGGAGGAGCCATCTCTGGGGCT +
Preference number: 4 (lower is better)
Translates to: SADAVGGSSPTS*SEQEGGAISGA
Trigger: AGCCCCAGAGATGGCTCCTCCCTCCTGCTCTGACAACGAGGTTGGTGAGCTTCCTCCAACCGCATCAGCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCGAAGCTTTGCGTTGCTaGCTTCTGGTGGGTCCAGAC +
Preference number: 4 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCEALRC*LLVGPD
Trigger: GTCTGGACCCACCAGAAGTCAGCAACGCAAAGCTTC...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCCTCCCCACCAGCTCCTaGTCCTGCTGCTGTACAGAT +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVLPTSS*SCCCTD
Trigger: ATCTGTACAGCAGCAGGATCAGGAGCTGGTGGGGAG...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101471.4
CDS-3UTR GCA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCTCACAGCGACCTTGGTaGTGGTGGCCCATTTCACCA +
Preference number: 4 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCSQRPW*WWPISP
Trigger: TGGTGAAATGGGCCACCAGCACCAAGGTCGCTGTGA...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGCTTATGGCCTTTCCCTaGAGGACACCTGACGTTGTT +
Preference number: 4 (lower is better)
Translates to: MGCASHWGPGVGHAAEVGLMAFP*RTPDVV
Trigger: AACAACGTCAGGTGTCCTCCAGGGAAAGGCCATAAG...CCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071500.13
CDS-3UTR CCA 90 bp TCTGTCAGACAGGAAGCCAGACAGGACTCACAGGTAGGAACAGGAACGCGGTGCGCGCGGGTCATCAGGTaGCATCATCTCCAGGTCGTG +
Preference number: 4 (lower is better)
Translates to: SVRQEARQDSQVGTGTRCARVIR*HHLQVV
Trigger: CACGACCTGGAGATGATGCCACCTGATGACCCGCGC...GCACCGCGTTCCTGTTCCTACCTGTGAGTCCTGTCTGGCTTCCTGTCTGACAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCACCACCACGGCTCCATaGCTGCTCACCAACACTGTT +
Preference number: 4 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCTTTAP*LLTNTV
Trigger: AACAGTGTTGGTGAGCAGCCATGGAGCCGTGGTGGT...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCTCATCGGCCGTGGCGTaGATGATCAGGAACTGCTGG +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVSSAVA*MIRNCW
Trigger: CCAGCAGTTCCTGATCATCCACGCCACGGCCGATGA...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGAAGCTTTGCGTTGCTaGCTTCTGGTGGGTCCAGAC +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGAEALRC*LLVGPD
Trigger: GTCTGGACCCACCAGAAGTCAGCAACGCAAAGCTTC...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCGCGCAGAGCCGCAGGTaGAAGTCTGACCTTGATTTT +
Preference number: 4 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCAQSRR*KSDLDF
Trigger: AAAATCAAGGTCAGACTTTCACCTGCGGCTCTGCGC...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp AGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTTGTTCCAGGCGTGCATACTGAAGCTTTaGGTTGCTGACTTCTGGTGG +
Preference number: 4 (lower is better)
Translates to: SHWGPGVGHAAEVGLFQACILKL*VADFWW
Trigger: CCACCAGAAGTCAGCAACGCAAAGCTTCAGTATGCA...CGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCCTGGGAGGATGTAAGTaGTCAGGTACCCACCATAAT +
Preference number: 4 (lower is better)
Translates to: LGEGHGMCQSLGARSRPCLGGCK*SGTHHN
Trigger: ATTATGGTGGGTACCTGAGCACTTACATCCTCCCAG...GCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGTTGCTGACTTCTGGTaGGTCCAGACTCTGAGGGTC +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGAVADFW*VQTLRV
Trigger: GACCCTCAGAGTCTGGACCCACCAGAAGTCAGCAAC...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCATGCGTTGCTGACTTCTaGTGGGTCCAGACTCTGAGG +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGACVADF*WVQTLR
Trigger: CCTCAGAGTCTGGACCCACCAGAAGTCAGCAACGCA...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTCAGCTGCTGGCCTTTTaGGCCCCACCCTGCATACTG +
Preference number: 4 (lower is better)
Translates to: GTVEAFLTTERGLACLGTQLLAF*APPCIL
Trigger: CAGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTG...AGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCAGCTGCTGGCCTTTTaGGCCCCACCCTGCATACTG +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTAQLLAF*APPCIL
Trigger: CAGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTG...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCACATGGAGCGAGATGCTaGGGTTTTCACTGCCAGCCT +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGAHGARC*GFHCQP
Trigger: AGGCTGGCAGTGAAAACCCCAGCATCTCGCTCCATG...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCACCACCACGGCTCCATaGCTGCTCACCAACACTGTT +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVTTTAP*LLTNTV
Trigger: AACAGTGTTGGTGAGCAGCCATGGAGCCGTGGTGGT...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTTGTTCCAGGCGTTTGAAGTCTGTTATTaGAGAGAGCGCAGAGCCGCA +
Preference number: 4 (lower is better)
Translates to: SHWGPGVGHAAEVGLFQAFEVCY*RERRAA
Trigger: TGCGGCTCTGCGCTCTCTCCAATAACAGACTTCAAA...CGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACACTCTCTCCGCGCCTGGTACTaGAACCGGGGCCGGCCACCA +
Preference number: 4 (lower is better)
Translates to: VSWALPLAKPVEVVKAHSLRAWY*NRGRPP
Trigger: TGGTGGCCGGCCCCGGTTCCAGTACCAGGCGCGGAG...AGAGTGTGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCACATACAGCCAGTCACTaGGGCCATTGTAGATCACGC +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGAHTASH*GHCRSR
Trigger: GCGTGATCTACAATGGCCTCAGTGACTGGCTGTATG...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp AGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGACTGTACAGATTTTCCTaGGGCGCTGGGCTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: SGGFSNNRERPGMSGHCGLYRFS*GAGLLG
Trigger: GCCAAGGAGCCCAGCGCCTCAGGAAAATCTGTACAG...TCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101471.4
CDS-3UTR GCA 90 bp TATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGTCACAGCGACCTTGGTaGTGGTGGCCCATTTCACCA +
Preference number: 4 (lower is better)
Translates to: YGDTCYGMPAPPLPLPLESQRPW*WWPISP
Trigger: TGGTGAAATGGGCCACCAGCACCAAGGTCGCTGTGA...CTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGTCAGACAGGAAGCCAGACAGGACTCACAGGTAGGAACAGGAACGCGGTGCCATGGAGCGAGATGCTaGGGTTTTCACTGCCAGCCT +
Preference number: 4 (lower is better)
Translates to: SVRQEARQDSQVGTGTRCHGARC*GFHCQP
Trigger: AGGCTGGCAGTGAAAACCCCAGCATCTCGCTCCATG...GCACCGCGTTCCTGTTCCTACCTGTGAGTCCTGTCTGGCTTCCTGTCTGACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGACAGCGACCTTGGTGCTaGTGGCCCATTTCACCATGG +
Preference number: 4 (lower is better)
Translates to: SGGFSNNRERPGMSGHCGQRPWC*WPISPW
Trigger: CCATGGTGAAATGGGCCACCAGCACCAAGGTCGCTG...TCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGGAGATGTCGTCTCCGTaGCAGGTCTTCTGTGCTCAG +
Preference number: 4 (lower is better)
Translates to: YGDTCYGMPAPPLPLPLEEMSSP*QVFCAQ
Trigger: CTGAGCACAGAAGACCTGCCACGGAGACGACATCTC...CTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCCTGTTGTCGAGTCCATaGAGGCCAAGGTACCTCTCA +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVLLSSP*RPRYLS
Trigger: TGAGAGGTACCTTGGCCTCCATGGACTCGACAACAG...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCACTGTTGTCGAGTCCATaGAGGCCAAGGTACCTCTCA +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGALLSSP*RPRYLS
Trigger: TGAGAGGTACCTTGGCCTCCATGGACTCGACAACAG...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCGGTCAACAGGATGACTaGGGTGACAATCAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVGQQDD*GDNQRA
Trigger: TGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACC...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCACCTGTGGGATCGCTCTaGCAAAGAAAAACTTCCTGC +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGAPVGSL*QRKTSC
Trigger: GCAGGAAGTTTTTCTTTGTCAGAGCGATCCCACAGG...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGTGGCAGGTCTTCTGTaGTCAGGAAATAGATCTTAT +
Preference number: 4 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHVAGLL*SGNRSY
Trigger: ATAAGATCTATTTCCTGAGCACAGAAGACCTGCCAC...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCATCATCTCCAGGTCGTaGGTGGGTCCATTCAAGCCG +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTAIISRS*VGPFKP
Trigger: CGGCTTGAATGGACCCACCCACGACCTGGAGATGAT...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCAGGTCACAGCGACCTTaGTGCTGGTGGCCCATTTCA +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTARSQRP*CWWPIS
Trigger: TGAAATGGGCCACCAGCACCAAGGTCGCTGTGACCT...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTAGGATTGACACATTCTaGGCCCGGTTCAGCCAGGTC +
Preference number: 4 (lower is better)
Translates to: GTVEAFLTTERGLACLGTRIDTF*ARFSQV
Trigger: GACCTGGCTGAACCGGGCCCAGAATGTGTCAATCCT...AGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCAGGATTGACACATTCTaGGCCCGGTTCAGCCAGGTC +
Preference number: 4 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGRIDTF*ARFSQV
Trigger: GACCTGGCTGAACCGGGCCCAGAATGTGTCAATCCT...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCTGTCATTGCTGCTGTTaGGCTGGGATGATGATACGG +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVCHCCC*AGMMIR
Trigger: CCGTATCATCATCCCAGCCCAACAGCAGCAATGACA...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAAGGAGCTTGGTTCCCTaGAAGCCGCTGCCTCGGCCG +
Preference number: 4 (lower is better)
Translates to: PVFWVQLGTVEAFLTTERRSLVP*KPLPRP
Trigger: CGGCCGAGGCAGCGGCTTCCAGGGAACCAAGCTCCT...TCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGTCATCGGCCGTGGCGTaGATGATCAGGAACTGCTGG +
Preference number: 4 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGSSAVA*MIRNCW
Trigger: CCAGCAGTTCCTGATCATCCACGCCACGGCCGATGA...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCTCTGGTGACCACCAATaGGCGATGTGGCTCTTCAGA +
Preference number: 4 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGSGDHQ*AMWLFR
Trigger: TCTGAAGAGCCACATCGCTCATTGGTGGTCACCAGA...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp AGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGAGCGCAGAGCCGCAGGTaGAAGTCTGACCTTGATTTT +
Preference number: 4 (lower is better)
Translates to: SGGFSNNRERPGMSGHCGAQSRR*KSDLDF
Trigger: AAAATCAAGGTCAGACTTTCACCTGCGGCTCTGCGC...TCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp ACGGTGGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTCGGCCGTGGCGTGGATaGTCAGGAACTGCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: TVGLKVTERKLELKGLFSRPWRG*SGTAGP
Trigger: AGGACCAGCAGTTCCTGATCATCCACGCCACGGCCG...AGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp AGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTTGTTCCAGGCGATTGCTTATCCACTTTaGCTCTGGGTCATGGATTTT +
Preference number: 4 (lower is better)
Translates to: SHWGPGVGHAAEVGLFQAIAYPL*LWVMDF
Trigger: AAAATCCATGACCCAGAGGCAAAGTGGATAAGCAAT...CGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATCCCCATGAGGAATTTTaGTCAGAACATAATATCCAG +
Preference number: 4 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHPHEEF*SEHNIQ
Trigger: CTGGATATTATGTTCTGAGCAAAATTCCTCATGGGG...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCAAGATAAATATCAGCTaGTGGCCTTTTGGGCCCCAC +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVKINIS*WPFGPH
Trigger: GTGGGGCCCAAAAGGCCAGCAGCTGATATTTATCTT...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TCTGTCAGACAGGAAGCCAGACAGGACTCACAGGTAGGAACAGGAACGCGGTGCACTGGATGTTGTCATTaGTGCTGTTGGGCTGGGATG +
Preference number: 4 (lower is better)
Translates to: SVRQEARQDSQVGTGTRCTGCCH*CCWAGM
Trigger: CATCCCAGCCCAACAGCAGCAATGACAACATCCAGT...GCACCGCGTTCCTGTTCCTACCTGTGAGTCCTGTCTGGCTTCCTGTCTGACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCACTGGGAGGATGTAAGTaGTCAGGTACCCACCATAAT +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGALGGCK*SGTHHN
Trigger: ATTATGGTGGGTACCTGAGCACTTACATCCTCCCAG...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCCTGGGAGGATGTAAGTaGTCAGGTACCCACCATAAT +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVLGGCK*SGTHHN
Trigger: ATTATGGTGGGTACCTGAGCACTTACATCCTCCCAG...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCGTACCTCTCAGAAAATaGAGAGGCATAGAGTTTGAA +
Preference number: 4 (lower is better)
Translates to: LGEGHGMCQSLGARSRPCVPLRK*RGIEFE
Trigger: TTCAAACTCTATGCCTCTGCATTTTCTGAGAGGTAC...GCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGCATAGGACAGGATCTTaGTCACATCCCAGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: YGDTCYGMPAPPLPLPLEHRTGS*SHPSLQ
Trigger: CTGGAGACTGGGATGTGACCAAGATCCTGTCCTATG...CTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACCACCACGGCTCCATaGCTGCTCACCAACACTGTT +
Preference number: 4 (lower is better)
Translates to: LGTVEAFLTTERGLACLGTTTAP*LLTNTV
Trigger: AACAGTGTTGGTGAGCAGCCATGGAGCCGTGGTGGT...GCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCATTTTCCTGAGGCGCTaGGCTCCTTGGCTGTGGTCA +
Preference number: 4 (lower is better)
Translates to: LGTVEAFLTTERGLACLGIFLRR*APWLWS
Trigger: TGACCACAGCCAAGGAGCCCAGCGCCTCAGGAAAAT...GCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101471.4
CDS-3UTR CCA 90 bp CTGGTATCTTCCGCTGGGGTCAACAGGATGACTGAGGTGACAATCAGAGAGCAGATTTTCCTGAGGCGCTaGGCTCCTTGGCTGTGGTCA +
Preference number: 4 (lower is better)
Translates to: LVSSAGVNRMTEVTIREQIFLRR*APWLWS
Trigger: TGACCACAGCCAAGGAGCCCAGCGCCTCAGGAAAAT...CTGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACCCCAGCGGAAGATACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148039.8
CDS-3UTR TCA 90 bp TGTTTTATTCCATGGATGACAGACGCTACCATGCCACATCCCCGAAGCCTTCCCGAAGCTTTGCGTTGCTaGCTTCTGGTGGGTCCAGAC +
Preference number: 4 (lower is better)
Translates to: CFIPWMTDATMPHPRSLPEALRC*LLVGPD
Trigger: GTCTGGACCCACCAGAAGTCAGCAACGCAAAGCTTC...GGGAAGGCTTCGGGGATGTGGCATGGTAGCGTCTGTCATCCATGGAATAAAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTCTCCACCAAGTCACATaGCAGACACTGCCTGTTGAA +
Preference number: 4 (lower is better)
Translates to: GTVEAFLTTERGLACLGTLHQVT*QTLPVE
Trigger: TTCAACAGGCAGTGTCTGTCATGTGACTTGGTGGAG...AGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTCTCGGCCGTCACACTTaGCCACCACGGCTCCATGGC +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEALGRHT*PPRLHG
Trigger: GCCATGGAGCCGTGGTGGTCAAGTGTGACGGCCGAG...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCCGGCCGTGGCGTGGATaGTCAGGAACTGCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: GSRLQRESLNLRACFLGFRPWRG*SGTAGP
Trigger: AGGACCAGCAGTTCCTGATCATCCACGCCACGGCCG...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCATCACATGACAGACACTaGCTGTTGAAGTCATCTACC +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGASHDRH*LLKSST
Trigger: GGTAGATGACTTCAACAGGCAGTGTCTGTCATGTGA...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGTCTTGTCAATATACTaGTCCTTCAGCATAGTTCTT +
Preference number: 4 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHVLSIY*SFSIVL
Trigger: AAGAACTATGCTGAAGGAGCAGTATATTGACAAGAC...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCTGGATGATCAGGAACTaGTGGTCCTCCAGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: LGTVEAFLTTERGLACLGWMIRN*WSSSAD
Trigger: GTCAGCACTGGAGGACCAGCAGTTCCTGATCATCCA...GCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGTGGATGATCAGGAACTaGTGGTCCTCCAGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGWMIRN*WSSSAD
Trigger: GTCAGCACTGGAGGACCAGCAGTTCCTGATCATCCA...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCTTTCCAGTTCCTCTGTaGAGGATTACTCCCCACCAG +
Preference number: 4 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGFPVPL*RITPHQ
Trigger: CTGGTGGGGAGTAATCCTCCACAGAGGAACTGGAAA...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ACGGTGGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTCAGCTGCTGGCCTTTTaGGCCCCACCCTGCATACTG +
Preference number: 4 (lower is better)
Translates to: TVGLKVTERKLELKGLFSQLLAF*APPCIL
Trigger: CAGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTG...AGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAACAAGAACCAATGCTCCAGCGCGGGTCATCAGGTaGCATCATCTCCAGGTCGTG +
Preference number: 4 (lower is better)
Translates to: WRAQLTTLPTDLTRTNAPARVIR*HHLQVV
Trigger: CACGACCTGGAGATGATGCCACCTGATGACCCGCGC...TGGAGCATTGGTTCTTGTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGCGCGGGTCATCAGGTaGCATCATCTCCAGGTCGTG +
Preference number: 4 (lower is better)
Translates to: PVFWVQLGTVEAFLTTERARVIR*HHLQVV
Trigger: CACGACCTGGAGATGATGCCACCTGATGACCCGCGC...TCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTAGGATTGACACATTCTaGGCCCGGTTCAGCCAGGTC +
Preference number: 4 (lower is better)
Translates to: GPFSPMPMHCLWRAQLTTRIDTF*ARFSQV
Trigger: GACCTGGCTGAACCGGGCCCAGAATGTGTCAATCCT...AGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGTCAGACAGGAAGCCAGACAGGACTCACAGGTAGGAACAGGAACGCGGTGCTCTTCATTCTGTCTGTaGAGCCAGGCTTCGCTTTCA +
Preference number: 4 (lower is better)
Translates to: SVRQEARQDSQVGTGTRCSSFCL*SQASLS
Trigger: TGAAAGCGAAGCCTGGCTCCACAGACAGAATGAAGA...GCACCGCGTTCCTGTTCCTACCTGTGAGTCCTGTCTGGCTTCCTGTCTGACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCTGTCATTGCTGCTGTTaGGCTGGGATGATGATACGG +
Preference number: 4 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGCHCCC*AGMMIR
Trigger: CCGTATCATCATCCCAGCCCAACAGCAGCAATGACA...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCGAGATGTCGTCTCCGTaGCAGGTCTTCTGTGCTCAG +
Preference number: 4 (lower is better)
Translates to: SVRTRSLLSNANALPMESEMSSP*QVFCAQ
Trigger: CTGAGCACAGAAGACCTGCCACGGAGACGACATCTC...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ATTGGGGGAGAATGGGTAGCAGTTGTAAGGACACATGTGATGGGTGGTGGAGTCGAGATGTCGTCTCCGTaGCAGGTCTTCTGTGCTCAG +
Preference number: 4 (lower is better)
Translates to: IGGEWVAVVRTHVMGGGVEMSSP*QVFCAQ
Trigger: CTGAGCACAGAAGACCTGCCACGGAGACGACATCTC...GACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTTGTTCCAGGCGCTTCAAGATTTGCATTaGCAAGCTGTAATCTTCTAC +
Preference number: 4 (lower is better)
Translates to: SHWGPGVGHAAEVGLFQALQDLH*QAVIFY
Trigger: GTAGAAGATTACAGCTTGCCAATGCAAATCTTGAAG...CGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTAGGAGCTTGGTTCCCTaGAAGCCGCTGCCTCGGCCG +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEARSLVP*KPLPRP
Trigger: CGGCCGAGGCAGCGGCTTCCAGGGAACCAAGCTCCT...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTATGATCAGGAACTGCTaGTCCTCCAGTGCTGACACT +
Preference number: 4 (lower is better)
Translates to: GTVEAFLTTERGLACLGTMIRNC*SSSADT
Trigger: AGTGTCAGCACTGGAGGACCAGCAGTTCCTGATCAT...AGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCCCTCCTCTTTTGCTGTaGCTGTTGGTAGCTTATCTT +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVPPLLL*LLVAYL
Trigger: AAGATAAGCTACCAACAGCCACAGCAAAAGAGGAGG...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TGTTTTATTCCATGGATGACAGACGCTACCATGCCACATCCCCGAAGCCTTCCCCATACAGCCAGTCACTaGGGCCATTGTAGATCACGC +
Preference number: 4 (lower is better)
Translates to: CFIPWMTDATMPHPRSLPHTASH*GHCRSR
Trigger: GCGTGATCTACAATGGCCTCAGTGACTGGCTGTATG...GGGAAGGCTTCGGGGATGTGGCATGGTAGCGTCTGTCATCCATGGAATAAAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TGTTTTATTCCATGGATGACAGACGCTACCATGCCACATCCCCGAAGCCTTCCCTCTGGTGACCACCAATaGGCGATGTGGCTCTTCAGA +
Preference number: 4 (lower is better)
Translates to: CFIPWMTDATMPHPRSLPSGDHQ*AMWLFR
Trigger: TCTGAAGAGCCACATCGCTCATTGGTGGTCACCAGA...GGGAAGGCTTCGGGGATGTGGCATGGTAGCGTCTGTCATCCATGGAATAAAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp ATTGGGGGAGAATGGGTAGCAGTTGTAAGGACACATGTGATGGGTGGTGGAGTCCAGGGCCTTCACACTTaGGCAGGAAGAAGTCCATGT +
Preference number: 4 (lower is better)
Translates to: IGGEWVAVVRTHVMGGGVQGLHT*AGRSPC
Trigger: ACATGGACTTCTTCCTGCTCAAGTGTGAAGGCCCTG...GACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACTGGTCCTCCAGTGCTaGCACTCGGTGTGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: FQVSWALPLAKPVEVVKALVLQC*HSVCQL
Trigger: AAGCTGGCACACCGAGTGTCAGCACTGGAGGACCAG...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCCTGGTCCTCCAGTGCTaGCACTCGGTGTGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: GSRLQRESLNLRACFLGFLVLQC*HSVCQL
Trigger: AAGCTGGCACACCGAGTGTCAGCACTGGAGGACCAG...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGGATGTTGTCATTaGTGCTGTTGGGCTGGGATG +
Preference number: 4 (lower is better)
Translates to: LGTVEAFLTTERGLACLGTGCCH*CCWAGM
Trigger: CATCCCAGCCCAACAGCAGCAATGACAACATCCAGT...GCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGTGGCAGGTCTTCTGTaGTCAGGAAATAGATCTTAT +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGAVAGLL*SGNRSY
Trigger: ATAAGATCTATTTCCTGAGCACAGAAGACCTGCCAC...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCGTGGCAGGTCTTCTGTaGTCAGGAAATAGATCTTAT +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVVAGLL*SGNRSY
Trigger: ATAAGATCTATTTCCTGAGCACAGAAGACCTGCCAC...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTGGGAGGATGTAAGTaGTCAGGTACCCACCATAAT +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTALGGCK*SGTHHN
Trigger: ATTATGGTGGGTACCTGAGCACTTACATCCTCCCAG...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGACCCACCAGCTCCTTATaGCCTTTCCCTGGAGGACAC +
Preference number: 4 (lower is better)
Translates to: PVFWVQLGTVEAFLTTERPTSSL*PFPGGH
Trigger: GTGTCCTCCAGGGAAAGGCCATAAGGAGCTGGTGGG...TCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071500.13
CDS-3UTR CCA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGTTTCCAGTTCCTCTGTaGAGGATTACTCCCCACCAG +
Preference number: 4 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGFPVPL*RITPHQ
Trigger: CTGGTGGGGAGTAATCCTCCACAGAGGAACTGGAAA...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCCAGCTGCTGGCCTTTTaGGCCCCACCCTGCATACTG +
Preference number: 4 (lower is better)
Translates to: GSRLQRESLNLRACFLGFQLLAF*APPCIL
Trigger: CAGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTG...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTACAGCGACCTTGGTGCTaGTGGCCCATTTCACCATGG +
Preference number: 4 (lower is better)
Translates to: MPMHCLWRAQLTTLPTDLQRPWC*WPISPW
Trigger: CCATGGTGAAATGGGCCACCAGCACCAAGGTCGCTG...TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTTGTAAGGACACATGTGATGGGTGGTGGAGTCACAGGCAAGTCCTAGATAGACAGCGACCTTGGTGCTaGTGGCCCATTTCACCATGG +
Preference number: 4 (lower is better)
Translates to: SCKDTCDGWWSHRQVLDRQRPWC*WPISPW
Trigger: CCATGGTGAAATGGGCCACCAGCACCAAGGTCGCTG...TCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGATCTTCATTCTGTCTGTaGAGCCAGGCTTCGCTTTCA +
Preference number: 4 (lower is better)
Translates to: SGGFSNNRERPGMSGHCGSSFCL*SQASLS
Trigger: TGAAAGCGAAGCCTGGCTCCACAGACAGAATGAAGA...TCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGACCAGAGGTGATAGACTaGATGTTGTCATTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SGGFSNNRERPGMSGHCGPEVID*MLSLLL
Trigger: CAGCAGCAATGACAACATCCAGTCTATCACCTCTGG...TCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCCATAGGACAGGATCTTaGTCACATCCCAGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: LGTVEAFLTTERGLACLGHRTGS*SHPSLQ
Trigger: CTGGAGACTGGGATGTGACCAAGATCCTGTCCTATG...GCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ACGGTGGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTCATCGGCCGTGGCGTaGATGATCAGGAACTGCTGG +
Preference number: 4 (lower is better)
Translates to: TVGLKVTERKLELKGLFSSSAVA*MIRNCW
Trigger: CCAGCAGTTCCTGATCATCCACGCCACGGCCGATGA...AGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TGTTTTATTCCATGGATGACAGACGCTACCATGCCACATCCCCGAAGCCTTCCCGGTCAACAGGATGACTaGGGTGACAATCAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: CFIPWMTDATMPHPRSLPGQQDD*GDNQRA
Trigger: TGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACC...GGGAAGGCTTCGGGGATGTGGCATGGTAGCGTCTGTCATCCATGGAATAAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp ATTGGGGGAGAATGGGTAGCAGTTGTAAGGACACATGTGATGGGTGGTGGAGTCGGTCAACAGGATGACTaGGGTGACAATCAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: IGGEWVAVVRTHVMGGGVGQQDD*GDNQRA
Trigger: TGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACC...GACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCGGGATATTTCATATCTaGTGGCTCTCAAGGATTCAA +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVGIFHI*WLSRIQ
Trigger: TTGAATCCTTGAGAGCCATCAGATATGAAATATCCC...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCCTGTGGGATCGCTCTaGCAAAGAAAAACTTCCTGC +
Preference number: 4 (lower is better)
Translates to: GPFSPMPMHCLWRAQLTTPVGSL*QRKTSC
Trigger: GCAGGAAGTTTTTCTTTGTCAGAGCGATCCCACAGG...AGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CCACTTTGCCTCTGGGTCATGGATTTTGAAGTCTTCACTGAAGAGATCTTCCACCTGTACAGATTTTCCTaGGGCGCTGGGCTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: PLCLWVMDFEVFTEEIFHLYRFS*GAGLLG
Trigger: GCCAAGGAGCCCAGCGCCTCAGGAAAATCTGTACAG...GTGGAAGATCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148039.8
CDS-3UTR GCA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCATTGCTTATCCACTTTaGCTCTGGGTCATGGATTTT +
Preference number: 4 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVIAYPL*LWVMDF
Trigger: AAAATCCATGACCCAGAGGCAAAGTGGATAAGCAAT...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAATTGCTTATCCACTTTaGCTCTGGGTCATGGATTTT +
Preference number: 4 (lower is better)
Translates to: LACLGTAETTMLSGSHGAIAYPL*LWVMDF
Trigger: AAAATCCATGACCCAGAGGCAAAGTGGATAAGCAAT...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp AGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGATCACATGACAGACACTaGCTGTTGAAGTCATCTACC +
Preference number: 4 (lower is better)
Translates to: SGGFSNNRERPGMSGHCGSHDRH*LLKSST
Trigger: GGTAGATGACTTCAACAGGCAGTGTCTGTCATGTGA...TCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGTCAGACAGGAAGCCAGACAGGACTCACAGGTAGGAACAGGAACGCGGTGCTTTGCCTCTGGGTCATaGATTTTGAAGTCTTCACTG +
Preference number: 4 (lower is better)
Translates to: SVRQEARQDSQVGTGTRCFASGS*ILKSSL
Trigger: CAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAA...GCACCGCGTTCCTGTTCCTACCTGTGAGTCCTGTCTGGCTTCCTGTCTGACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGATGCGTTGCTGACTTCTaGTGGGTCCAGACTCTGAGG +
Preference number: 4 (lower is better)
Translates to: PVFWVQLGTVEAFLTTERCVADF*WVQTLR
Trigger: CCTCAGAGTCTGGACCCACCAGAAGTCAGCAACGCA...TCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAACAAGAACCAATGCTCCACATGGAGCGAGATGCTaGGGTTTTCACTGCCAGCCT +
Preference number: 4 (lower is better)
Translates to: WRAQLTTLPTDLTRTNAPHGARC*GFHCQP
Trigger: AGGCTGGCAGTGAAAACCCCAGCATCTCGCTCCATG...TGGAGCATTGGTTCTTGTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAACAAGAACCAATGCTCCAATCATCTCCAGGTCGTaGGTGGGTCCATTCAAGCCG +
Preference number: 4 (lower is better)
Translates to: WRAQLTTLPTDLTRTNAPIISRS*VGPFKP
Trigger: CGGCTTGAATGGACCCACCCACGACCTGGAGATGAT...TGGAGCATTGGTTCTTGTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAAATCATCTCCAGGTCGTaGGTGGGTCCATTCAAGCCG +
Preference number: 4 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQIISRS*VGPFKP
Trigger: CGGCTTGAATGGACCCACCCACGACCTGGAGATGAT...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTGCGCGGGTCATCAGGTaGCATCATCTCCAGGTCGTG +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEAARVIR*HHLQVV
Trigger: CACGACCTGGAGATGATGCCACCTGATGACCCGCGC...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAAGGTCACAGCGACCTTaGTGCTGGTGGCCCATTTCA +
Preference number: 4 (lower is better)
Translates to: PVFWVQLGTVEAFLTTERRSQRP*CWWPIS
Trigger: TGAAATGGGCCACCAGCACCAAGGTCGCTGTGACCT...TCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCACTTCCTGCCATCTTTaGAGAACACAGGCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTATSCHL*RTQALH
Trigger: ATGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGT...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCACTTCCTGCCATCTTTaGAGAACACAGGCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGTSCHL*RTQALH
Trigger: ATGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGT...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ATTGGGGGAGAATGGGTAGCAGTTGTAAGGACACATGTGATGGGTGGTGGAGTCTGTCATTGCTGCTGTTaGGCTGGGATGATGATACGG +
Preference number: 4 (lower is better)
Translates to: IGGEWVAVVRTHVMGGGVCHCCC*AGMMIR
Trigger: CCGTATCATCATCCCAGCCCAACAGCAGCAATGACA...GACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGAAGAAGTCCATGTTATaGCTGAAAGAAGCGCTGACA +
Preference number: 4 (lower is better)
Translates to: YGDTCYGMPAPPLPLPLEKKSML*LKEALT
Trigger: TGTCAGCGCTTCTTTCAGCCATAACATGGACTTCTT...CTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACACTCTACCACCACGGCTCCATaGCTGCTCACCAACACTGTT +
Preference number: 4 (lower is better)
Translates to: VSWALPLAKPVEVVKAHSTTTAP*LLTNTV
Trigger: AACAGTGTTGGTGAGCAGCCATGGAGCCGTGGTGGT...AGAGTGTGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCCAACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTGCACAGAACCAAAGCTTCCTGTAGGAGCTTaGTTCCCTGGAAGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: SNRPNKNQCSKLMCTEPKLPVGA*FPGSRC
Trigger: GCAGCGGCTTCCAGGGAACCAAGCTCCTACAGGAAG...CTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCCTTCCTGTAGGAGCTTaGTTCCCTGGAAGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: GSRLQRESLNLRACFLGFLPVGA*FPGSRC
Trigger: GCAGCGGCTTCCAGGGAACCAAGCTCCTACAGGAAG...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCATGATCAGGAACTGCTaGTCCTCCAGTGCTGACACT +
Preference number: 4 (lower is better)
Translates to: SVRTRSLLSNANALPMESMIRNC*SSSADT
Trigger: AGTGTCAGCACTGGAGGACCAGCAGTTCCTGATCAT...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCCCTCCTCTTTTGCTGTaGCTGTTGGTAGCTTATCTT +
Preference number: 4 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGPPLLL*LLVAYL
Trigger: AAGATAAGCTACCAACAGCCACAGCAAAAGAGGAGG...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCCTCCTCTTTTGCTGTaGCTGTTGGTAGCTTATCTT +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTAPPLLL*LLVAYL
Trigger: AAGATAAGCTACCAACAGCCACAGCAAAAGAGGAGG...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CAA 72 bp TTGGGTTCAAAGTATGCCCTTACTGTCATCTGTCCTTaGCTTTGTCCCTTGGGGGAGGGACATGGGATGTGC +
Preference number: 4 (lower is better)
Translates to: LGSKYALTVICP*LCPLGEGHGMC
Trigger: GCACATCCCATGTCCCTCCCCCAAGGGACAAAGCAAAGGACAGATGACAGTAAGGGCATACTTTGAACCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CAA 72 bp AGCTGGCTCCCCTTTCAGGTCTCCTGGGCTTTGCCATaGGCTAAACCTGTTGAAGTAGTGAAAGCACACTCT +
Preference number: 4 (lower is better)
Translates to: SWLPFQVSWALP*AKPVEVVKAHS
Trigger: AGAGTGTGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAAGGGGAGCCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CAA 72 bp AGCCAAAGCTGGCTCCCCTTTCAGGTCTCCTGGGCTTaGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCA +
Preference number: 4 (lower is better)
Translates to: SQSWLPFQVSWA*PLAKPVEVVKA
Trigger: TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAAGGGGAGCCAGCTTTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGGGGATATTTCATATCTaGTGGCTCTCAAGGATTCAA +
Preference number: 4 (lower is better)
Translates to: YGDTCYGMPAPPLPLPLEGIFHI*WLSRIQ
Trigger: TTGAATCCTTGAGAGCCATCAGATATGAAATATCCC...CTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACACTCTCATACAGCCAGTCACTaGGGCCATTGTAGATCACGC +
Preference number: 4 (lower is better)
Translates to: VSWALPLAKPVEVVKAHSHTASH*GHCRSR
Trigger: GCGTGATCTACAATGGCCTCAGTGACTGGCTGTATG...AGAGTGTGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACATACAGCCAGTCACTaGGGCCATTGTAGATCACGC +
Preference number: 4 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQHTASH*GHCRSR
Trigger: GCGTGATCTACAATGGCCTCAGTGACTGGCTGTATG...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAAGCGCAGAGCCGCAGGTaGAAGTCTGACCTTGATTTT +
Preference number: 4 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQAQSRR*KSDLDF
Trigger: AAAATCAAGGTCAGACTTTCACCTGCGGCTCTGCGC...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCAGAGGCATAGAGTTTaGAGTCTGTTATTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTAQRHRV*SLLLER
Trigger: TCTCTCCAATAACAGACTTCAAACTCTATGCCTCTG...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCGTGGCAGGTCTTCTGTaGTCAGGAAATAGATCTTAT +
Preference number: 4 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGVAGLL*SGNRSY
Trigger: ATAAGATCTATTTCCTGAGCACAGAAGACCTGCCAC...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGTCACATGACAGACACTaGCTGTTGAAGTCATCTACC +
Preference number: 4 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGSHDRH*LLKSST
Trigger: GGTAGATGACTTCAACAGGCAGTGTCTGTCATGTGA...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGGTACCTCTCAGAAAATaGAGAGGCATAGAGTTTGAA +
Preference number: 4 (lower is better)
Translates to: YGDTCYGMPAPPLPLPLEVPLRK*RGIEFE
Trigger: TTCAAACTCTATGCCTCTGCATTTTCTGAGAGGTAC...CTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp ATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTATGGATGATCAGGAACTaGTGGTCCTCCAGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: MPMHCLWRAQLTTLPTDLWMIRN*WSSSAD
Trigger: GTCAGCACTGGAGGACCAGCAGTTCCTGATCATCCA...TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCCATGGAGCGAGATGCTaGGGTTTTCACTGCCAGCCT +
Preference number: 4 (lower is better)
Translates to: GSRLQRESLNLRACFLGFHGARC*GFHCQP
Trigger: AGGCTGGCAGTGAAAACCCCAGCATCTCGCTCCATG...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTCAGCGACCTTGGTGCTaGTGGCCCATTTCACCATGG +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEAQRPWC*WPISPW
Trigger: CCATGGTGAAATGGGCCACCAGCACCAAGGTCGCTG...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCAAGGTCACAGCGACCTTaGTGCTGGTGGCCCATTTCA +
Preference number: 4 (lower is better)
Translates to: FQVSWALPLAKPVEVVKARSQRP*CWWPIS
Trigger: TGAAATGGGCCACCAGCACCAAGGTCGCTGTGACCT...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCTCTTCATTCTGTCTGTaGAGCCAGGCTTCGCTTTCA +
Preference number: 4 (lower is better)
Translates to: SVRTRSLLSNANALPMESSSFCL*SQASLS
Trigger: TGAAAGCGAAGCCTGGCTCCACAGACAGAATGAAGA...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCGAGATGTCGTCTCCGTaGCAGGTCTTCTGTGCTCAG +
Preference number: 4 (lower is better)
Translates to: GSRLQRESLNLRACFLGFEMSSP*QVFCAQ
Trigger: CTGAGCACAGAAGACCTGCCACGGAGACGACATCTC...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGAAAGAAGTCCATGTTATaGCTGAAAGAAGCGCTGACA +
Preference number: 4 (lower is better)
Translates to: SGGFSNNRERPGMSGHCGKKSML*LKEALT
Trigger: TGTCAGCGCTTCTTTCAGCCATAACATGGACTTCTT...TCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTACTGTTGTCGAGTCCATaGAGGCCAAGGTACCTCTCA +
Preference number: 4 (lower is better)
Translates to: MPMHCLWRAQLTTLPTDLLLSSP*RPRYLS
Trigger: TGAGAGGTACCTTGGCCTCCATGGACTCGACAACAG...TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACACTCTGGTCAACAGGATGACTaGGGTGACAATCAGAGAGCA +
Preference number: 4 (lower is better)
Translates to: VSWALPLAKPVEVVKAHSGQQDD*GDNQRA
Trigger: TGCTCTCTGATTGTCACCTCAGTCATCCTGTTGACC...AGAGTGTGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCTCCGTTCTCTGTAGATaGATTCCTTATTGCTTATCC +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTASVLCR*IPYCLS
Trigger: GGATAAGCAATAAGGAATTCATCTACAGAGAACGGA...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCTCTGGTGACCACCAATaGGCGATGTGGCTCTTCAGA +
Preference number: 4 (lower is better)
Translates to: GSRLQRESLNLRACFLGFSGDHQ*AMWLFR
Trigger: TCTGAAGAGCCACATCGCTCATTGGTGGTCACCAGA...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp AGTTGTAAGGACACATGTGATGGGTGGTGGAGTCACAGGCAAGTCCTAGATAGACCTGTGGGATCGCTCTaGCAAAGAAAAACTTCCTGC +
Preference number: 4 (lower is better)
Translates to: SCKDTCDGWWSHRQVLDRPVGSL*QRKTSC
Trigger: GCAGGAAGTTTTTCTTTGTCAGAGCGATCCCACAGG...TCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTCACAGCGACCTTGGTaGTGGTGGCCCATTTCACCA +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEASQRPW*WWPISP
Trigger: TGGTGAAATGGGCCACCAGCACCAAGGTCGCTGTGA...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp AGTTGTAAGGACACATGTGATGGGTGGTGGAGTCACAGGCAAGTCCTAGATAGAACTGGATGTTGTCATTaGTGCTGTTGGGCTGGGATG +
Preference number: 4 (lower is better)
Translates to: SCKDTCDGWWSHRQVLDRTGCCH*CCWAGM
Trigger: CATCCCAGCCCAACAGCAGCAATGACAACATCCAGT...TCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCGTACCTCTCAGAAAATaGAGAGGCATAGAGTTTGAA +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTAVPLRK*RGIEFE
Trigger: TTCAAACTCTATGCCTCTGCATTTTCTGAGAGGTAC...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CACACTGCCTGTGGGATACTCATGATGTTGGCTTATTTGGCAAACCTAGGAGTGTTTCCAGTTCCTCTGTaGAGGATTACTCCCCACCAG +
Preference number: 4 (lower is better)
Translates to: HTACGILMMLAYLANLGVFPVPL*RITPHQ
Trigger: CTGGTGGGGAGTAATCCTCCACAGAGGAACTGGAAA...CACTCCTAGGTTTGCCAAATAAGCCAACATCATGAGTATCCCACAGGCAGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCTTTGCCTCTGGGTCATaGATTTTGAAGTCTTCACTG +
Preference number: 4 (lower is better)
Translates to: LGTVEAFLTTERGLACLGFASGS*ILKSSL
Trigger: CAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAA...GCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CACACTGCCTGTGGGATACTCATGATGTTGGCTTATTTGGCAAACCTAGGAGTGCATAGGACAGGATCTTaGTCACATCCCAGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: HTACGILMMLAYLANLGVHRTGS*SHPSLQ
Trigger: CTGGAGACTGGGATGTGACCAAGATCCTGTCCTATG...CACTCCTAGGTTTGCCAAATAAGCCAACATCATGAGTATCCCACAGGCAGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCCAACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTGCACAGAACCAAAGCTGTTGTCGAGTCCATaGAGGCCAAGGTACCTCTCA +
Preference number: 4 (lower is better)
Translates to: SNRPNKNQCSKLMCTEPKLLSSP*RPRYLS
Trigger: TGAGAGGTACCTTGGCCTCCATGGACTCGACAACAG...CTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ACGGTGGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTATGATCAGGAACTGCTaGTCCTCCAGTGCTGACACT +
Preference number: 4 (lower is better)
Translates to: TVGLKVTERKLELKGLFSMIRNC*SSSADT
Trigger: AGTGTCAGCACTGGAGGACCAGCAGTTCCTGATCAT...AGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGCGGAGTTGGTAGCTTATCTTaGACTCTGAAACATTCCACA +
Preference number: 4 (lower is better)
Translates to: SGGFSNNRERPGMSGHCGVGSLS*TLKHST
Trigger: TGTGGAATGTTTCAGAGTCCAAGATAAGCTACCAAC...TCCGCAGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
3UTR CAA 72 bp GTGGAAGACCACACTGCCTGTGGGATACTCATGATGTaGGCTTATTTGGCAAACCTAGGAGTGGAACCCAAT +
Preference number: 4 (lower is better)
Translates to: VEDHTACGILMM*AYLANLGVEPN
Trigger: ATTGGGTTCCACTCCTAGGTTTGCCAAATAAGCCAACATCATGAGTATCCCACAGGCAGTGTGGTCTTCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TCCAACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTGCACAGAACCAAAGCCTGTGGGATCGCTCTaGCAAAGAAAAACTTCCTGC +
Preference number: 4 (lower is better)
Translates to: SNRPNKNQCSKLMCTEPKPVGSL*QRKTSC
Trigger: GCAGGAAGTTTTTCTTTGTCAGAGCGATCCCACAGG...CTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACTCCACCAAGTCACATaGCAGACACTGCCTGTTGAA +
Preference number: 4 (lower is better)
Translates to: FQVSWALPLAKPVEVVKALHQVT*QTLPVE
Trigger: TTCAACAGGCAGTGTCTGTCATGTGACTTGGTGGAG...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAACAAGAACCAATGCTCCAAAGATAAATATCAGCTaGTGGCCTTTTGGGCCCCAC +
Preference number: 4 (lower is better)
Translates to: WRAQLTTLPTDLTRTNAPKINIS*WPFGPH
Trigger: GTGGGGCCCAAAAGGCCAGCAGCTGATATTTATCTT...TGGAGCATTGGTTCTTGTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TCCAACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTGCACAGAACCAAAGACTGGATGTTGTCATTaGTGCTGTTGGGCTGGGATG +
Preference number: 4 (lower is better)
Translates to: SNRPNKNQCSKLMCTEPKTGCCH*CCWAGM
Trigger: CATCCCAGCCCAACAGCAGCAATGACAACATCCAGT...CTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCGTCTTGTCAATATACTaGTCCTTCAGCATAGTTCTT +
Preference number: 4 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGVLSIY*SFSIVL
Trigger: AAGAACTATGCTGAAGGAGCAGTATATTGACAAGAC...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCGTCTTGTCAATATACTaGTCCTTCAGCATAGTTCTT +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTAVLSIY*SFSIVL
Trigger: AAGAACTATGCTGAAGGAGCAGTATATTGACAAGAC...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp ACGGTGGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTCCATCACGTTGCCCTaGATTTTAGCGGTCTTGATC +
Preference number: 4 (lower is better)
Translates to: TVGLKVTERKLELKGLFSSITLP*ILAVLI
Trigger: GATCAAGACCGCTAAAATGCAGGGCAACGTGATGGA...AGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120555.8
CDS-3UTR CCA 90 bp TGTTTTATTCCATGGATGACAGACGCTACCATGCCACATCCCCGAAGCCTTCCCTTTGCCTCTGGGTCATaGATTTTGAAGTCTTCACTG +
Preference number: 4 (lower is better)
Translates to: CFIPWMTDATMPHPRSLPFASGS*ILKSSL
Trigger: CAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAA...GGGAAGGCTTCGGGGATGTGGCATGGTAGCGTCTGTCATCCATGGAATAAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACCAGAGGTGATAGACTaGATGTTGTCATTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQPEVID*MLSLLL
Trigger: CAGCAGCAATGACAACATCCAGTCTATCACCTCTGG...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTCAAGATTTGCATTaGCAAGCTGTAATCTTCTAC +
Preference number: 4 (lower is better)
Translates to: PSIWRHMLWNARTSTPTALQDLH*QAVIFY
Trigger: GTAGAAGATTACAGCTTGCCAATGCAAATCTTGAAG...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCACTTTGCCTCTGGGTCATGGATTTTGAAGTCTTCACTGAAGAGATCTTCCACGGGAAGTCAGAACAATaGGGTCTCTGGTTGTATCGC +
Preference number: 4 (lower is better)
Translates to: PLCLWVMDFEVFTEEIFHGKSEQ*GLWLYR
Trigger: GCGATACAACCAGAGACCCCATTGTTCTGACTTCCC...GTGGAAGATCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148039.8
CDS-3UTR GCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCTGCATACTGAAGCTTTaGGTTGCTGACTTCTGGTGG +
Preference number: 4 (lower is better)
Translates to: GSRLQRESLNLRACFLGFCILKL*VADFWW
Trigger: CCACCAGAAGTCAGCAACGCAAAGCTTCAGTATGCA...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCTCTTCATTCTGTCTGTaGAGCCAGGCTTCGCTTTCA +
Preference number: 4 (lower is better)
Translates to: GSRLQRESLNLRACFLGFSSFCL*SQASLS
Trigger: TGAAAGCGAAGCCTGGCTCCACAGACAGAATGAAGA...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTCATAGGACAGGATCTTaGTCACATCCCAGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEAHRTGS*SHPSLQ
Trigger: CTGGAGACTGGGATGTGACCAAGATCCTGTCCTATG...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCTTTGAAGTCTGTTATTaGAGAGAGCGCAGAGCCGCA +
Preference number: 4 (lower is better)
Translates to: GSRLQRESLNLRACFLGFFEVCY*RERRAA
Trigger: TGCGGCTCTGCGCTCTCTCCAATAACAGACTTCAAA...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TCCAACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTGCACAGAACCAAAGTTTGAAGTCTGTTATTaGAGAGAGCGCAGAGCCGCA +
Preference number: 4 (lower is better)
Translates to: SNRPNKNQCSKLMCTEPKFEVCY*RERRAA
Trigger: TGCGGCTCTGCGCTCTCTCCAATAACAGACTTCAAA...CTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTATGATCAGGAACTGCTaGTCCTCCAGTGCTGACACT +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEAMIRNC*SSSADT
Trigger: AGTGTCAGCACTGGAGGACCAGCAGTTCCTGATCAT...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CGTCAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTCTGGTGACCACCAATaGGCGATGTGGCTCTTCAGA +
Preference number: 4 (lower is better)
Translates to: RQQSQKGELVIGIFQTGTSGDHQ*AMWLFR
Trigger: TCTGAAGAGCCACATCGCTCATTGGTGGTCACCAGA...AGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTGACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGAGGCATAGAGTTTaGAGTCTGTTATTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQQRHRV*SLLLER
Trigger: TCTCTCCAATAACAGACTTCAAACTCTATGCCTCTG...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp ACGGTGGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTCAGAGGCATAGAGTTTaGAGTCTGTTATTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: TVGLKVTERKLELKGLFSQRHRV*SLLLER
Trigger: TCTCTCCAATAACAGACTTCAAACTCTATGCCTCTG...AGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTGCATACTGAAGCTTTaGGTTGCTGACTTCTGGTGG +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEACILKL*VADFWW
Trigger: CCACCAGAAGTCAGCAACGCAAAGCTTCAGTATGCA...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTAAGATAAATATCAGCTaGTGGCCTTTTGGGCCCCAC +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEAKINIS*WPFGPH
Trigger: GTGGGGCCCAAAAGGCCAGCAGCTGATATTTATCTT...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TCCAACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTGCACAGAACCAAAGTCACATGACAGACACTaGCTGTTGAAGTCATCTACC +
Preference number: 4 (lower is better)
Translates to: SNRPNKNQCSKLMCTEPKSHDRH*LLKSST
Trigger: GGTAGATGACTTCAACAGGCAGTGTCTGTCATGTGA...CTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGATTTGCCTCTGGGTCATaGATTTTGAAGTCTTCACTG +
Preference number: 4 (lower is better)
Translates to: PVFWVQLGTVEAFLTTERFASGS*ILKSSL
Trigger: CAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAA...TCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ACGGTGGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTAAGAAGTCCATGTTATaGCTGAAAGAAGCGCTGACA +
Preference number: 4 (lower is better)
Translates to: TVGLKVTERKLELKGLFSKKSML*LKEALT
Trigger: TGTCAGCGCTTCTTTCAGCCATAACATGGACTTCTT...AGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCAAGATTTGCATTaGCAAGCTGTAATCTTCTAC +
Preference number: 4 (lower is better)
Translates to: GPFSPMPMHCLWRAQLTTLQDLH*QAVIFY
Trigger: GTAGAAGATTACAGCTTGCCAATGCAAATCTTGAAG...AGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTGAAGTCTGTTATTaGAGAGAGCGCAGAGCCGCA +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEAFEVCY*RERRAA
Trigger: TGCGGCTCTGCGCTCTCTCCAATAACAGACTTCAAA...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp AGTTGTAAGGACACATGTGATGGGTGGTGGAGTCACAGGCAAGTCCTAGATAGAATTGCTTATCCACTTTaGCTCTGGGTCATGGATTTT +
Preference number: 4 (lower is better)
Translates to: SCKDTCDGWWSHRQVLDRIAYPL*LWVMDF
Trigger: AAAATCCATGACCCAGAGGCAAAGTGGATAAGCAAT...TCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp AGTTGTAAGGACACATGTGATGGGTGGTGGAGTCACAGGCAAGTCCTAGATAGAGTACCTCTCAGAAAATaGAGAGGCATAGAGTTTGAA +
Preference number: 4 (lower is better)
Translates to: SCKDTCDGWWSHRQVLDRVPLRK*RGIEFE
Trigger: TTCAAACTCTATGCCTCTGCATTTTCTGAGAGGTAC...TCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CGTCAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTGTCATTGCTGCTGTTaGGCTGGGATGATGATACGG +
Preference number: 4 (lower is better)
Translates to: RQQSQKGELVIGIFQTGTCHCCC*AGMMIR
Trigger: CCGTATCATCATCCCAGCCCAACAGCAGCAATGACA...AGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTGACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCAAAGAAGTCCATGTTATaGCTGAAAGAAGCGCTGACA +
Preference number: 4 (lower is better)
Translates to: FQVSWALPLAKPVEVVKAKKSML*LKEALT
Trigger: TGTCAGCGCTTCTTTCAGCCATAACATGGACTTCTT...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp ATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAGTTGGTAGCTTATCTTaGACTCTGAAACATTCCACA +
Preference number: 4 (lower is better)
Translates to: MPMHCLWRAQLTTLPTDLVGSLS*TLKHST
Trigger: TGTGGAATGTTTCAGAGTCCAAGATAAGCTACCAAC...TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp GTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACACTCTGTTGGTAGCTTATCTTaGACTCTGAAACATTCCACA +
Preference number: 4 (lower is better)
Translates to: VSWALPLAKPVEVVKAHSVGSLS*TLKHST
Trigger: TGTGGAATGTTTCAGAGTCCAAGATAAGCTACCAAC...AGAGTGTGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCAGGGATATTTCATATCTaGTGGCTCTCAAGGATTCAA +
Preference number: 4 (lower is better)
Translates to: FQVSWALPLAKPVEVVKAGIFHI*WLSRIQ
Trigger: TTGAATCCTTGAGAGCCATCAGATATGAAATATCCC...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTTTGCGCAGAGCCGCAGGTaGAAGTCTGACCTTGATTTT +
Preference number: 4 (lower is better)
Translates to: QQSQKGELVIGIFQTGTFAQSRR*KSDLDF
Trigger: AAAATCAAGGTCAGACTTTCACCTGCGGCTCTGCGC...AAAAGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp CGTCAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTAAGATAAATATCAGCTaGTGGCCTTTTGGGCCCCAC +
Preference number: 4 (lower is better)
Translates to: RQQSQKGELVIGIFQTGTKINIS*WPFGPH
Trigger: GTGGGGCCCAAAAGGCCAGCAGCTGATATTTATCTT...AGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTGACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR GCA 90 bp TGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTAACAAGAACCAATGCTCCAGTCTTGTCAATATACTaGTCCTTCAGCATAGTTCTT +
Preference number: 4 (lower is better)
Translates to: WRAQLTTLPTDLTRTNAPVLSIY*SFSIVL
Trigger: AAGAACTATGCTGAAGGAGCAGTATATTGACAAGAC...TGGAGCATTGGTTCTTGTTAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CGTCAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTCCAGAGGTGATAGACTaGATGTTGTCATTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: RQQSQKGELVIGIFQTGTPEVID*MLSLLL
Trigger: CAGCAGCAATGACAACATCCAGTCTATCACCTCTGG...AGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTGACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp AGTTGTAAGGACACATGTGATGGGTGGTGGAGTCACAGGCAAGTCCTAGATAGACTTCAAGATTTGCATTaGCAAGCTGTAATCTTCTAC +
Preference number: 4 (lower is better)
Translates to: SCKDTCDGWWSHRQVLDRLQDLH*QAVIFY
Trigger: GTAGAAGATTACAGCTTGCCAATGCAAATCTTGAAG...TCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTGGGATATTTCATATCTaGTGGCTCTCAAGGATTCAA +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEAGIFHI*WLSRIQ
Trigger: TTGAATCCTTGAGAGCCATCAGATATGAAATATCCC...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR TCA 90 bp CAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTTTCTCCACCAAGTCACATaGCAGACACTGCCTGTTGAA +
Preference number: 4 (lower is better)
Translates to: QQSQKGELVIGIFQTGTFLHQVT*QTLPVE
Trigger: TTCAACAGGCAGTGTCTGTCATGTGACTTGGTGGAG...AAAAGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTGTTGGTAGCTTATCTTaGACTCTGAAACATTCCACA +
Preference number: 4 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEAVGSLS*TLKHST
Trigger: TGTGGAATGTTTCAGAGTCCAAGATAAGCTACCAAC...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTTTACTTCCTGCCATCTTTaGAGAACACAGGCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: QQSQKGELVIGIFQTGTFTSCHL*RTQALH
Trigger: ATGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGT...AAAAGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CCA 90 bp CAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTTTCCTCCTCTTTTGCTGTaGCTGTTGGTAGCTTATCTT +
Preference number: 4 (lower is better)
Translates to: QQSQKGELVIGIFQTGTFPPLLL*LLVAYL
Trigger: AAGATAAGCTACCAACAGCCACAGCAAAAGAGGAGG...AAAAGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 90 bp GTAGGAGCTTGGTTCCCTGGAAGCCGCTGCCTCGGCCGTCACACTTaGCCACCACGGCTCCATGGCTGCTCACCAACACTGTTTCCCAGG +
Preference number: 5 (lower is better)
Translates to: VGAWFPGSRCLGRHT*PPRLHGCSPTLFPR
Trigger: CCTGGGAAACAGTGTTGGTGAGCAGCCATGGAGCCGTGGTGGTCAAGTGTGACGGCCGAGGCAGCGGCTTCCAGGGAACCAAGCTCCTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp CAGACACCCGTGGTGGCATCACAGAGGGTCAGGATTGACACATTCTaGGCCCGGTTCAGCCAGGTCACAGCGACCTTGGTGCTGGTGGCC +
Preference number: 5 (lower is better)
Translates to: QTPVVASQRVRIDTF*ARFSQVTATLVLVA
Trigger: GGCCACCAGCACCAAGGTCGCTGTGACCTGGCTGAACCGGGCCCAGAATGTGTCAATCCTGACCCTCTGTGATGCCACCACGGGTGTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp AGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTTGTTCCAGGCGCCAGGGCCTTCACACTaGAGCAGGAAGAAGTCCATG +
Preference number: 5 (lower is better)
Translates to: SHWGPGVGHAAEVGLFQAPGPSH*SRKKSM
Trigger: CATGGACTTCTTCCTGCTCAAGTGTGAAGGCCCTGG...CGCCTGGAACAACCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATCCAGGGCCTTCACACTaGAGCAGGAAGAAGTCCATG +
Preference number: 5 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHPGPSH*SRKKSM
Trigger: CATGGACTTCTTCCTGCTCAAGTGTGAAGGCCCTGG...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp ATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGCCAGGGCCTTCACACTaGAGCAGGAAGAAGTCCATG +
Preference number: 5 (lower is better)
Translates to: MGCASHWGPGVGHAAEVGPGPSH*SRKKSM
Trigger: CATGGACTTCTTCCTGCTCAAGTGTGAAGGCCCTGG...CCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp ATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGCCTCCTCCTCCTCTTTaGCTGTGGCTGTTGGTAGCT +
Preference number: 5 (lower is better)
Translates to: MGCASHWGPGVGHAAEVGPPPPL*LWLLVA
Trigger: AGCTACCAACAGCCACAGCAAAAGAGGAGGAGGAGG...CCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp TGGAAGCCGCTGCCTCGGCCGTCACACTTGACCACCACGGCTCCATaGCTGCTCACCAACACTGTTTCCCAGGTCACCTCAAACCTCTCT +
Preference number: 5 (lower is better)
Translates to: WKPLPRPSHLTTTAP*LLTNTVSQVTSNLS
Trigger: AGAGAGGTTTGAGGTGACCTGGGAAACAGTGTTGGTGAGCAGCCATGGAGCCGTGGTGGTCAAGTGTGACGGCCGAGGCAGCGGCTTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCATCTCATACGCTCTGTaGTCGAGTCCATGGAGGCCA +
Preference number: 5 (lower is better)
Translates to: LGEGHGMCQSLGARSRPCISYAL*SSPWRP
Trigger: TGGCCTCCATGGACTCGACAACAGAGCGTATGAGAT...GCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGCTGGACAGGTGCTGCTaGAGCGCCACGCTGTGGAAG +
Preference number: 5 (lower is better)
Translates to: YGDTCYGMPAPPLPLPLELDRCC*SATLWK
Trigger: CTTCCACAGCGTGGCGCTCAAGCAGCACCTGTCCAG...CTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp TATTCCCTCATGCGCGGGTCATCAGGTGGCATCATCTCCAGGTCGTaGGTGGGTCCATTCAAGCCGATGACATGGAGCGAGATGCTGGGG +
Preference number: 5 (lower is better)
Translates to: YSLMRGSSGGIISRS*VGPFKPMTWSEMLG
Trigger: CCCCAGCATCTCGCTCCATGTCATCGGCTTGAATGGACCCACCCACGACCTGGAGATGATGCCACCTGATGACCCGCGCATGAGGGAATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGCAGGTCACAGCGACCTaGGTGCTGGTGGCCCATTTC +
Preference number: 5 (lower is better)
Translates to: YGDTCYGMPAPPLPLPLEQVTAT*VLVAHF
Trigger: GAAATGGGCCACCAGCACCAAGGTCGCTGTGACCTG...CTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp ATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGGGTGAAAGTCTGACCTaGATTTTCTCCCTTGGCTGG +
Preference number: 5 (lower is better)
Translates to: MGCASHWGPGVGHAAEVGGESLT*IFSLGW
Trigger: CCAGCCAAGGGAGAAAATCAAGGTCAGACTTTCACC...CCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCAT
59% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCTCAGCTGCTGGCCTTTaGGGCCCCACCCTGCATACT +
Preference number: 5 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGSAAGL*GPTLHT
Trigger: AGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTGA...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATAACTTCCTGCCATCTTaGGAGAACACAGGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHNFLPS*ENTGSS
Trigger: TGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGTT...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCATCTCATACGCTCTGTaGTCGAGTCCATGGAGGCCA +
Preference number: 5 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCISYAL*SSPWRP
Trigger: TGGCCTCCATGGACTCGACAACAGAGCGTATGAGAT...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCACCTCCTCCTCCTCTTTaGCTGTGGCTGTTGGTAGCT +
Preference number: 5 (lower is better)
Translates to: LACLGTAETTMLSGSHGAPPPPL*LWLLVA
Trigger: AGCTACCAACAGCCACAGCAAAAGAGGAGGAGGAGG...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 90 bp TTTCTTAGTGCAGACACCCGTGGTGGCATCACAGAGGGTCAGGATTaGCACATTCTGGGCCCGGTTCAGCCAGGTCACAGCGACCTTGGT +
Preference number: 5 (lower is better)
Translates to: FLSADTRGGITEGQD*HILGPVQPGHSDLG
Trigger: ACCAAGGTCGCTGTGACCTGGCTGAACCGGGCCCAGAATGTGTCAATCCTGACCCTCTGTGATGCCACCACGGGTGTCTGCACTAAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATTGCATTTTAGCGGTCTaGATCATGGCCTTTTCCTTC +
Preference number: 5 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHCILAV*IMAFSF
Trigger: GAAGGAAAAGGCCATGATCAAGACCGCTAAAATGCA...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000120555.8
CDS TCA 90 bp GCCAGGTCACAGCGACCTTGGTGCTGGTGGCCCATTTCACCATGGTaGTGTAATATTCCCTCATGCGCGGGTCATCAGGTGGCATCATCT +
Preference number: 5 (lower is better)
Translates to: ARSQRPWCWWPISPW*CNIPSCAGHQVASS
Trigger: AGATGATGCCACCTGATGACCCGCGCATGAGGGAATATTACATCACCATGGTGAAATGGGCCACCAGCACCAAGGTCGCTGTGACCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTTCAGCTGCTGGCCTTTaGGGCCCCACCCTGCATACT +
Preference number: 5 (lower is better)
Translates to: GPFSPMPMHCLWRAQLTTSAAGL*GPTLHT
Trigger: AGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTGA...AGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCTTGTCATTGCTGCTGTaGGGCTGGGATGATGATACG +
Preference number: 5 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVLSLLL*GWDDDT
Trigger: CGTATCATCATCCCAGCCCAACAGCAGCAATGACAA...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGCTCTGTCGTGATAGACTGGATGTaGTCATTGCTGCTGTTGGGC +
Preference number: 5 (lower is better)
Translates to: SGHCGDNHAVWFPWCSSVVIDWM*SLLLLG
Trigger: GCCCAACAGCAGCAATGACAACATCCAGTCTATCAC...GACAGAGCTGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCCAGGGCCTTCACACTaGAGCAGGAAGAAGTCCATG +
Preference number: 5 (lower is better)
Translates to: PSIWRHMLWNARTSTPTAPGPSH*SRKKSM
Trigger: CATGGACTTCTTCCTGCTCAAGTGTGAAGGCCCTGG...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTCAAACATTCTTCTCTaGTCCGTGGTGTTATGCACA +
Preference number: 5 (lower is better)
Translates to: LGEGHGMCQSLGARSRPCSNILL*SVVLCT
Trigger: TGTGCATAACACCACGGACAAGAGAAGAATGTTTGA...GCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CCTTGGGGGAGGGACATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATTCAAACATTCTTCTCTaGTCCGTGGTGTTATGCACA +
Preference number: 5 (lower is better)
Translates to: PWGRDMGCASHWGPGVGHSNILL*SVVLCT
Trigger: TGTGCATAACACCACGGACAAGAGAAGAATGTTTGA...ATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCATGTCCCTCCCCCAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CTGGCATGTCTGGGCACTGCGGAGACAACCATGCTGTCTGGTTCCCATGGTGCAGGTGAAAGTCTGACCTaGATTTTCTCCCTTGGCTGG +
Preference number: 5 (lower is better)
Translates to: LACLGTAETTMLSGSHGAGESLT*IFSLGW
Trigger: CCAGCCAAGGGAGAAAATCAAGGTCAGACTTTCACC...TGCACCATGGGAACCAGACAGCATGGTTGTCTCCGCAGTGCCCAGACATGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCCTTTTGCTGTGGCTGTaGGTAGCTTATCTTGGACTC +
Preference number: 5 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCLLLWL*VAYLGL
Trigger: GAGTCCAAGATAAGCTACCAACAGCCACAGCAAAAG...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp ATAGTGGTAGGGCTTCACAGTGGGGTAGACAGAGCCTGTGTACGTTaGCAGCTCCATAAGTGGAACCCGGGAGTCGTTGATGGTGGCATA +
Preference number: 5 (lower is better)
Translates to: IVVGLHSGVDRACVR*QLHKWNPGVVDGGI
Trigger: TATGCCACCATCAACGACTCCCGGGTTCCACTTATGGAGCTGCCAACGTACACAGGCTCTGTCTACCCCACTGTGAAGCCCTACCACTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCCTTGGAGGTGATAGACTGGATGTaGTCATTGCTGCTGTTGGGC +
Preference number: 5 (lower is better)
Translates to: YGDTCYGMPAPPLPLPLEVIDWM*SLLLLG
Trigger: GCCCAACAGCAGCAATGACAACATCCAGTCTATCAC...CTCCAAGGGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp ATGGGATGTGCCAGTCACTGGGGGCCAGGAGTAGGCCATGCTGCTGAGGTGGGGTCTGAACTTCCTCATTaGCTTCCAAGTCAAACATTC +
Preference number: 5 (lower is better)
Translates to: MGCASHWGPGVGHAAEVGSELPH*LPSQTF
Trigger: GAATGTTTGACTTGGAAGCAAATGAGGAAGTTCAGA...CCCCACCTCAGCAGCATGGCCTACTCCTGGCCCCCAGTGACTGGCACATCCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp ATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTACTGGACAGGTGCTGCTaGAGCGCCACGCTGTGGAAG +
Preference number: 5 (lower is better)
Translates to: MPMHCLWRAQLTTLPTDLLDRCC*SATLWK
Trigger: CTTCCACAGCGTGGCGCTCAAGCAGCACCTGTCCAG...TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp TTTCACCATGGTGATGTAATATTCCCTCATGCGCGGGTCATCAGGTaGCATCATCTCCAGGTCGTGGGTGGGTCCATTCAAGCCGATGAC +
Preference number: 5 (lower is better)
Translates to: FHHGDVIFPHARVIR*HHLQVVGGSIQADD
Trigger: GTCATCGGCTTGAATGGACCCACCCACGACCTGGAGATGATGCCACCTGATGACCCGCGCATGAGGGAATATTACATCACCATGGTGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp AAGGATGACGAGCAGCGCAATGGCGATTCCTTTCCAGTTCCTCTGTaGAGGATTACTCCCCACCAGCTCCATCACGTTGCCCTGCATTTT +
Preference number: 5 (lower is better)
Translates to: KDDEQRNGDSFPVPL*RITPHQLHHVALHF
Trigger: AAAATGCAGGGCAACGTGATGGAGCTGGTGGGGAGTAATCCTCCACAGAGGAACTGGAAAGGAATCGCCATTGCGCTGCTCGTCATCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120555.8
CDS-3UTR CAA 90 bp CCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGATCAGCTGCTGGCCTTTaGGGCCCCACCCTGCATACT +
Preference number: 5 (lower is better)
Translates to: PVFWVQLGTVEAFLTTERSAAGL*GPTLHT
Trigger: AGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTGA...TCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp ACGGTGGGGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTCAGGTCACAGCGACCTaGGTGCTGGTGGCCCATTTC +
Preference number: 5 (lower is better)
Translates to: TVGLKVTERKLELKGLFSQVTAT*VLVAHF
Trigger: GAAATGGGCCACCAGCACCAAGGTCGCTGTGACCTG...AGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCCCCACCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGGTCACAGCGACCTaGGTGCTGGTGGCCCATTTC +
Preference number: 5 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQQVTAT*VLVAHF
Trigger: GAAATGGGCCACCAGCACCAAGGTCGCTGTGACCTG...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTTTGTCATTGCTGCTGTaGGGCTGGGATGATGATACG +
Preference number: 5 (lower is better)
Translates to: GTVEAFLTTERGLACLGTLSLLL*GWDDDT
Trigger: CGTATCATCATCCCAGCCCAACAGCAGCAATGACAA...AGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCGTGATAGACTGGATGTaGTCATTGCTGCTGTTGGGC +
Preference number: 5 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGVIDWM*SLLLLG
Trigger: GCCCAACAGCAGCAATGACAACATCCAGTCTATCAC...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCGTGATAGACTGGATGTaGTCATTGCTGCTGTTGGGC +
Preference number: 5 (lower is better)
Translates to: PSIWRHMLWNARTSTPTAVIDWM*SLLLLG
Trigger: GCCCAACAGCAGCAATGACAACATCCAGTCTATCAC...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GAGGGAGGAGCCATCTCTGGGGCTGGTGTTGACAGGAGTGGAAGACCACACTGCTCAAACATTCTTCTCTaGTCCGTGGTGTTATGCACA +
Preference number: 5 (lower is better)
Translates to: EGGAISGAGVDRSGRPHCSNILL*SVVLCT
Trigger: TGTGCATAACACCACGGACAAGAGAAGAATGTTTGA...GCAGTGTGGTCTTCCACTCCTGTCAACACCAGCCCCAGAGATGGCTCCTCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCACTGGTGAAAGTCTGACCTaGATTTTCTCCCTTGGCTGG +
Preference number: 5 (lower is better)
Translates to: GTVEAFLTTERGLACLGTGESLT*IFSLGW
Trigger: CCAGCCAAGGGAGAAAATCAAGGTCAGACTTTCACC...AGTGCCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCCTGGACAGGTGCTGCTaGAGCGCCACGCTGTGGAAG +
Preference number: 5 (lower is better)
Translates to: GSRLQRESLNLRACFLGFLDRCC*SATLWK
Trigger: CTTCCACAGCGTGGCGCTCAAGCAGCACCTGTCCAG...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TGTTTTATTCCATGGATGACAGACGCTACCATGCCACATCCCCGAAGCCTTCCCCCTCCTCCTCCTCTTTaGCTGTGGCTGTTGGTAGCT +
Preference number: 5 (lower is better)
Translates to: CFIPWMTDATMPHPRSLPPPPPL*LWLLVA
Trigger: AGCTACCAACAGCCACAGCAAAAGAGGAGGAGGAGG...GGGAAGGCTTCGGGGATGTGGCATGGTAGCGTCTGTCATCCATGGAATAAAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 90 bp GGGTACCATCCACCACGAGCAATAAGGGGTAGTGAGCTGTGTCGGTaGAGGTGGCCGGCTTCAAGATTTGCATTGGCAAGCTGTAATCTT +
Preference number: 5 (lower is better)
Translates to: GYHPPRAIRGSELCR*RWPASRFALASCNL
Trigger: AAGATTACAGCTTGCCAATGCAAATCTTGAAGCCGGCCACCTTCACCGACACAGCTCACTACCCCTTATTGCTCGTGGTGGATGGTACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 90 bp ATGCTAGGGAAGTCAGAACAATGGGGTCTCTGGTTGTATCGCATCTaGTCCTGCTGCTGTACAGATTTTCCTGAGGCGCTGGGCTCCTTG +
Preference number: 5 (lower is better)
Translates to: MLGKSEQWGLWLYRI*SCCCTDFPEALGSL
Trigger: CAAGGAGCCCAGCGCCTCAGGAAAATCTGTACAGCAGCAGGATCAGATGCGATACAACCAGAGACCCCATTGTTCTGACTTCCCTAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148039.8
CDS CCA 90 bp CGCAGAGCCGCAGGTGAAAGTCTGACCTTGATTTTCTCCCTTGGCTaGGAGGATGTAAGTGCTCAGGTACCCACCATAATCCTTCCCAAA +
Preference number: 5 (lower is better)
Translates to: RRAAGESLTLIFSLG*EDVSAQVPTIILPK
Trigger: TTTGGGAAGGATTATGGTGGGTACCTGAGCACTTACATCCTCCCAGCCAAGGGAGAAAATCAAGGTCAGACTTTCACCTGCGGCTCTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGTTGTCATTGCTGCTGTaGGGCTGGGATGATGATACG +
Preference number: 5 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGLSLLL*GWDDDT
Trigger: CGTATCATCATCCCAGCCCAACAGCAGCAATGACAA...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTATCTCATACGCTCTGTaGTCGAGTCCATGGAGGCCA +
Preference number: 5 (lower is better)
Translates to: GPFSPMPMHCLWRAQLTTISYAL*SSPWRP
Trigger: TGGCCTCCATGGACTCGACAACAGAGCGTATGAGAT...AGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 90 bp CATAGGTGCAGTTCTCCACCAAGTCACATGACAGACACTGCCTGTTaGAGTCATCTACCGTGTTGGCACTGTAGAGATGTCGTCTCCGTG +
Preference number: 5 (lower is better)
Translates to: HRCSSPPSHMTDTAC*SHLPCWHCRDVVSV
Trigger: CACGGAGACGACATCTCTACAGTGCCAACACGGTAGATGACTTCAACAGGCAGTGTCTGTCATGTGACTTGGTGGAGAACTGCACCTATG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 90 bp GTTCTCAAAGATAAATATCAGCTGCTGGCCTTTTGGGCCCCACCCTaGATACTGAAGCTTTGCGTTGCTGACTTCTGGTGGGTCCAGACT +
Preference number: 5 (lower is better)
Translates to: VLKDKYQLLAFWAPP*ILKLCVADFWWVQT
Trigger: AGTCTGGACCCACCAGAAGTCAGCAACGCAAAGCTTCAGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTGATATTTATCTTTGAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTCAGCTGCTGGCCTTTaGGGCCCCACCCTGCATACT +
Preference number: 5 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEASAAGL*GPTLHT
Trigger: AGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTGA...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGAACTTCCTGCCATCTTaGGAGAACACAGGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGNFLPS*ENTGSS
Trigger: TGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGTT...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCTTGTCATTGCTGCTGTaGGGCTGGGATGATGATACG +
Preference number: 5 (lower is better)
Translates to: SVRTRSLLSNANALPMESLSLLL*GWDDDT
Trigger: CGTATCATCATCCCAGCCCAACAGCAGCAATGACAA...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGCTTTTGCTGTGGCTGTaGGTAGCTTATCTTGGACTC +
Preference number: 5 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGLLLWL*VAYLGL
Trigger: GAGTCCAAGATAAGCTACCAACAGCCACAGCAAAAG...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAAAGGAGCGCGAGGTGTaGATCTTGCCGGTGAACCTT +
Preference number: 5 (lower is better)
Translates to: PVFWVQLGTVEAFLTTERKEREV*ILPVNL
Trigger: AAGGTTCACCGGCAAGATCAACACCTCGCGCTCCTT...TCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122171.8
CDS TCA 90 bp GCTGAAAGAAGCGCTGACATAGGTGCAGTTCTCCACCAAGTCACATaGCAGACACTGCCTGTTGAAGTCATCTACCGTGTTGGCACTGTA +
Preference number: 5 (lower is better)
Translates to: AERSADIGAVLHQVT*QTLPVEVIYRVGTV
Trigger: TACAGTGCCAACACGGTAGATGACTTCAACAGGCAGTGTCTGTCATGTGACTTGGTGGAGAACTGCACCTATGTCAGCGCTTCTTTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 90 bp CCGTGTTGGCACTGTAGAGATGTCGTCTCCGTGGCAGGTCTTCTGTaGTCAGGAAATAGATCTTATTCCGCTTCTCATCATAGGACAGGA +
Preference number: 5 (lower is better)
Translates to: PCWHCRDVVSVAGLL*SGNRSYSASHHRTG
Trigger: TCCTGTCCTATGATGAGAAGCGGAATAAGATCTATTTCCTGAGCACAGAAGACCTGCCACGGAGACGACATCTCTACAGTGCCAACACGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp TCCTCCTCCTCCTCCTCTTTTGCTGTGGCTGTTGGTAGCTTATCTTaGACTCTGAAACATTCCACAAAGAAGCCGATGATGGACCTGGAC +
Preference number: 5 (lower is better)
Translates to: SSSSSSFAVAVGSLS*TLKHSTKKPMMDLD
Trigger: GTCCAGGTCCATCATCGGCTTCTTTGTGGAATGTTTCAGAGTCCAAGATAAGCTACCAACAGCCACAGCAAAAGAGGAGGAGGAGGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCTCAAACATTCTTCTCTaGTCCGTGGTGTTATGCACA +
Preference number: 5 (lower is better)
Translates to: LGAVRDSGGFSNNRERPGSNILL*SVVLCT
Trigger: TGTGCATAACACCACGGACAAGAGAAGAATGTTTGA...GCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TCTGTCAGACAGGAAGCCAGACAGGACTCACAGGTAGGAACAGGAACGCGGTGCTCTGAACTTCCTCATTaGCTTCCAAGTCAAACATTC +
Preference number: 5 (lower is better)
Translates to: SVRQEARQDSQVGTGTRCSELPH*LPSQTF
Trigger: GAATGTTTGACTTGGAAGCAAATGAGGAAGTTCAGA...GCACCGCGTTCCTGTTCCTACCTGTGAGTCCTGTCTGGCTTCCTGTCTGACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TCTCTCCAATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAAATCTCATACGCTCTGTaGTCGAGTCCATGGAGGCCA +
Preference number: 5 (lower is better)
Translates to: SLQCQCIAYGEPSLQLFQISYAL*SSPWRP
Trigger: TGGCCTCCATGGACTCGACAACAGAGCGTATGAGAT...TTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCATTGGAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TCCAACAGACCTAACAAGAACCAATGCTCCAAGCTCATGTGCACAGAACCAAAGCCTCCTCCTCCTCTTTaGCTGTGGCTGTTGGTAGCT +
Preference number: 5 (lower is better)
Translates to: SNRPNKNQCSKLMCTEPKPPPPL*LWLLVA
Trigger: AGCTACCAACAGCCACAGCAAAAGAGGAGGAGGAGG...CTTTGGTTCTGTGCACATGAGCTTGGAGCATTGGTTCTTGTTAGGTCTGTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 90 bp GCCATTGTAGATCACGCCCTCCTTCCCTGTAGAGACCACTCGAATTaGCTGCTTTCCAACGTGTGCACAGTAGTAGATGTTGTTCTCAAA +
Preference number: 5 (lower is better)
Translates to: AIVDHALLPCRDHSN*LLSNVCTVVDVVLK
Trigger: TTTGAGAACAACATCTACTACTGTGCACACGTTGGAAAGCAGGCAATTCGAGTGGTCTCTACAGGGAAGGAGGGCGTGATCTACAATGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp GTTGAAGTCATCTACCGTGTTGGCACTGTAGAGATGTCGTCTCCGTaGCAGGTCTTCTGTGCTCAGGAAATAGATCTTATTCCGCTTCTC +
Preference number: 5 (lower is better)
Translates to: VEVIYRVGTVEMSSP*QVFCAQEIDLIPLL
Trigger: GAGAAGCGGAATAAGATCTATTTCCTGAGCACAGAAGACCTGCCACGGAGACGACATCTCTACAGTGCCAACACGGTAGATGACTTCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGTCTGGGTCATGGATTTaGAAGTCTTCACTGAAGAGA +
Preference number: 5 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGSGSWI*KSSLKR
Trigger: TCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGA...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CCTTCAATATGGAGACACATGCTATGGAATGCCCGCACCTCCACTCCCACTGCCACACCGTGGAATTATTaGTTTCAACATTCCGCAGTA +
Preference number: 5 (lower is better)
Translates to: PSIWRHMLWNARTSTPTATPWNY*FQHSAV
Trigger: TACTGCGGAATGTTGAAACAAATAATTCCACGGTGT...GGCAGTGGGAGTGGAGGTGCGGGCATTCCATAGCATGTGTCTCCATATTGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp GTAGTAGATGTTGTTCTCAAAGATAAATATCAGCTGCTGGCCTTTTaGGCCCCACCCTGCATACTGAAGCTTTGCGTTGCTGACTTCTGG +
Preference number: 5 (lower is better)
Translates to: VVDVVLKDKYQLLAF*APPCILKLCVADFW
Trigger: CCAGAAGTCAGCAACGCAAAGCTTCAGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTGATATTTATCTTTGAGAACAACATCTACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp ATTGGGGGAGAATGGGTAGCAGTTGTAAGGACACATGTGATGGGTGGTGGAGTCTCTGGGTCATGGATTTaGAAGTCTTCACTGAAGAGA +
Preference number: 5 (lower is better)
Translates to: IGGEWVAVVRTHVMGGGVSGSWI*KSSLKR
Trigger: TCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGA...GACTCCACCACCCATCACATGTGTCCTTACAACTGCTACCCATTCTCCCCCAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCTCTGGGTCATGGATTTaGAAGTCTTCACTGAAGAGA +
Preference number: 5 (lower is better)
Translates to: SVRTRSLLSNANALPMESSGSWI*KSSLKR
Trigger: TCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGA...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp AGTTGTAAGGACACATGTGATGGGTGGTGGAGTCACAGGCAAGTCCTAGATAGAAACTTCCTGCCATCTTaGGAGAACACAGGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: SCKDTCDGWWSHRQVLDRNFLPS*ENTGSS
Trigger: TGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGTT...TCTATCTAGGACTTGCCTGTGACTCCACCACCCATCACATGTGTCCTTACAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAGGCCTGGCATGTCTGGGGCTTCAAGATTTGCATaGGCAAGCTGTAATCTTCTA +
Preference number: 5 (lower is better)
Translates to: VRDSGGFSNNRERPGMSGASRFA*ASCNLL
Trigger: TAGAAGATTACAGCTTGCCAATGCAAATCTTGAAGC...CCCAGACATGCCAGGCCTCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCGGTGAAAGTCTGACCTaGATTTTCTCCCTTGGCTGG +
Preference number: 5 (lower is better)
Translates to: GSRLQRESLNLRACFLGFGESLT*IFSLGW
Trigger: CCAGCCAAGGGAGAAAATCAAGGTCAGACTTTCACC...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTTTCTGGACAGGTGCTGCTaGAGCGCCACGCTGTGGAAG +
Preference number: 5 (lower is better)
Translates to: QQSQKGELVIGIFQTGTFLDRCC*SATLWK
Trigger: CTTCCACAGCGTGGCGCTCAAGCAGCACCTGTCCAG...AAAAGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp ATGCCAATGCATTGCCTATGGAGAGCCCAGCTTACAACTCTTCCAACAGACCTACTTTTGCTGTGGCTGTaGGTAGCTTATCTTGGACTC +
Preference number: 5 (lower is better)
Translates to: MPMHCLWRAQLTTLPTDLLLLWL*VAYLGL
Trigger: GAGTCCAAGATAAGCTACCAACAGCCACAGCAAAAG...TAGGTCTGTTGGAAGAGTTGTAAGCTGGGCTCTCCATAGGCAATGCATTGGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp AACTTCCTGCCATCTTTGGAGAACACAGGCTCTTCATTCTGTCTGTaGAGCCAGGCTTCGCTTTCATCTTCATGTTTCTTAGTGCAGACA +
Preference number: 5 (lower is better)
Translates to: NFLPSLENTGSSFCL*SQASLSSSCFLVQT
Trigger: TGTCTGCACTAAGAAACATGAAGATGAAAGCGAAGCCTGGCTCCACAGACAGAATGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 90 bp GTACCTCTCAGAAAATGCAGAGGCATAGAGTTTGAAGTCTGTTATTaGAGAGAGCGCAGAGCCGCAGGTGAAAGTCTGACCTTGATTTTC +
Preference number: 5 (lower is better)
Translates to: VPLRKCRGIEFEVCY*RERRAAGESLTLIF
Trigger: GAAAATCAAGGTCAGACTTTCACCTGCGGCTCTGCGCTCTCTCCAATAACAGACTTCAAACTCTATGCCTCTGCATTTTCTGAGAGGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTTTCAGGTCACAGCGACCTaGGTGCTGGTGGCCCATTTC +
Preference number: 5 (lower is better)
Translates to: QQSQKGELVIGIFQTGTFQVTAT*VLVAHF
Trigger: GAAATGGGCCACCAGCACCAAGGTCGCTGTGACCTG...AAAAGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCAACTTCCTGCCATCTTaGGAGAACACAGGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: GSRLQRESLNLRACFLGFNFLPS*ENTGSS
Trigger: TGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGTT...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TCTGTCAGGACTAGGTCCCTTCTCTCCAATGCCAATGCATTGCCTATGGAGAGCGCTTCAAGATTTGCATaGGCAAGCTGTAATCTTCTA +
Preference number: 5 (lower is better)
Translates to: SVRTRSLLSNANALPMESASRFA*ASCNLL
Trigger: TAGAAGATTACAGCTTGCCAATGCAAATCTTGAAGC...GCTCTCCATAGGCAATGCATTGGCATTGGAGAGAAGGGACCTAGTCCTGACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACTTTTGCTGTGGCTGTaGGTAGCTTATCTTGGACTC +
Preference number: 5 (lower is better)
Translates to: FQVSWALPLAKPVEVVKALLLWL*VAYLGL
Trigger: GAGTCCAAGATAAGCTACCAACAGCCACAGCAAAAG...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 90 bp CTCCTTCCCTGTAGAGACCACTCGAATTGCCTGCTTTCCAACGTGTaGACAGTAGTAGATGTTGTTCTCAAAGATAAATATCAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LLPCRDHSNCLLSNV*TVVDVVLKDKYQLL
Trigger: CAGCAGCTGATATTTATCTTTGAGAACAACATCTACTACTGTGCACACGTTGGAAAGCAGGCAATTCGAGTGGTCTCTACAGGGAAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TTTCAGGTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCATCTGGGTCATGGATTTaGAAGTCTTCACTGAAGAGA +
Preference number: 5 (lower is better)
Translates to: FQVSWALPLAKPVEVVKASGSWI*KSSLKR
Trigger: TCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGA...TGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGACCTGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GGCTCAAGGTTACAGAGAGAAAGCTTGAACTTAAGGGCCTGTTTTCTTGGGTTCTATTGCTTATCCACTTaGCCTCTGGGTCATGGATTT +
Preference number: 5 (lower is better)
Translates to: GSRLQRESLNLRACFLGFYCLST*PLGHGF
Trigger: AAATCCATGACCCAGAGGCAAAGTGGATAAGCAATA...GAACCCAAGAAAACAGGCCCTTAAGTTCAAGCTTTCTCTCTGTAACCTTGAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTTTTCTAACAACAGAGAGAACACCGTGGAATTATTaGTTTCAACATTCCGCAGTA +
Preference number: 5 (lower is better)
Translates to: PVFWVQLGTVEAFLTTERTPWNY*FQHSAV
Trigger: TACTGCGGAATGTTGAAACAAATAATTCCACGGTGT...TCTCTCTGTTGTTAGAAAAGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACACTCTACACCGTGGAATTATTaGTTTCAACATTCCGCAGTA +
Preference number: 5 (lower is better)
Translates to: VSWALPLAKPVEVVKAHSTPWNY*FQHSAV
Trigger: TACTGCGGAATGTTGAAACAAATAATTCCACGGTGT...AGAGTGTGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp GTCTCCTGGGCTTTGCCATTGGCTAAACCTGTTGAAGTAGTGAAAGCACACTCTTCTGAACTTCCTCATTaGCTTCCAAGTCAAACATTC +
Preference number: 5 (lower is better)
Translates to: VSWALPLAKPVEVVKAHSSELPH*LPSQTF
Trigger: GAATGTTTGACTTGGAAGCAAATGAGGAAGTTCAGA...AGAGTGTGCTTTCACTACTTCAACAGGTTTAGCCAATGGCAAAGCCCAGGAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 90 bp TTTCGATATTCAATCTTCGGCATCTGCCGGTCGTTGATAGCCTTCTaGACTTCCTCATTTGCTTCCAAGTCAAACATTCTTCTCTTGTCC +
Preference number: 5 (lower is better)
Translates to: FRYSIFGICRSLIAF*TSSFASKSNILLLS
Trigger: GGACAAGAGAAGAATGTTTGACTTGGAAGCAAATGAGGAAGTTCAGAAGGCTATCAACGACCGGCAGATGCCGAAGATTGAATATCGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp TACTTTGTACATAAAAGACCTGTTTTCTGGGTGCAGTTAGGGACAGTGGAGGCTGCTTCAAGATTTGCATaGGCAAGCTGTAATCTTCTA +
Preference number: 5 (lower is better)
Translates to: YFVHKRPVFWVQLGTVEAASRFA*ASCNLL
Trigger: TAGAAGATTACAGCTTGCCAATGCAAATCTTGAAGC...AGCCTCCACTGTCCCTAACTGCACCCAGAAAACAGGTCTTTTATGTACAAAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS-3UTR CAA 90 bp CAACAATCCCAAAAGGGAGAGTTAGTGATTGGTATATTTCAAACTGGCACTTTTGCTTCAAGATTTGCATaGGCAAGCTGTAATCTTCTA +
Preference number: 5 (lower is better)
Translates to: QQSQKGELVIGIFQTGTFASRFA*ASCNLL
Trigger: TAGAAGATTACAGCTTGCCAATGCAAATCTTGAAGC...AAAAGTGCCAGTTTGAAATATACCAATCACTAACTCTCCCTTTTGGGATTGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 90 bp TTCTCCTCCAGGAAGCCTAGCCGCCTCCGTACTTCCTGTAGGAGCTaGGTTCCCTGGAAGCCGCTGCCTCGGCCGTCACACTTGACCACC +
Preference number: 6 (lower is better)
Translates to: FSSRKPSRLRTSCRS*VPWKPLPRPSHLTT
Trigger: GGTGGTCAAGTGTGACGGCCGAGGCAGCGGCTTCCAGGGAACCAAGCTCCTACAGGAAGTACGGAGGCGGCTAGGCTTCCTGGAGGAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp GCAGACACCCGTGGTGGCATCACAGAGGGTCAGGATTaGCACATTCTGGGCCCGGTTCAGCCAGGTCACAGC +
Preference number: 6 (lower is better)
Translates to: ADTRGGITEGQD*HILGPVQPGHS
Trigger: GCTGTGACCTGGCTGAACCGGGCCCAGAATGTGTCAATCCTGACCCTCTGTGATGCCACCACGGGTGTCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp CTGCCTCGGCCGTCACACTTGACCACCACGGCTCCATaGCTGCTCACCAACACTGTTTCCCAGGTCACCTCA +
Preference number: 6 (lower is better)
Translates to: LPRPSHLTTTAP*LLTNTVSQVTS
Trigger: TGAGGTGACCTGGGAAACAGTGTTGGTGAGCAGCCATGGAGCCGTGGTGGTCAAGTGTGACGGCCGAGGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp ATGCGCGGGTCATCAGGTGGCATCATCTCCAGGTCGTaGGTGGGTCCATTCAAGCCGATGACATGGAGCGAG +
Preference number: 6 (lower is better)
Translates to: MRGSSGGIISRS*VGPFKPMTWSE
Trigger: CTCGCTCCATGTCATCGGCTTGAATGGACCCACCCACGACCTGGAGATGATGCCACCTGATGACCCGCGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp GTGGTGGCATCACAGAGGGTCAGGATTGACACATTCTaGGCCCGGTTCAGCCAGGTCACAGCGACCTTGGTG +
Preference number: 6 (lower is better)
Translates to: VVASQRVRIDTF*ARFSQVTATLV
Trigger: CACCAAGGTCGCTGTGACCTGGCTGAACCGGGCCCAGAATGTGTCAATCCTGACCCTCTGTGATGCCACCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp TTGGGCCCCACCCTGCATACTGAAGCTTTGCGTTGCTaGCTTCTGGTGGGTCCAGACTCTGAGGGTCCCCAT +
Preference number: 6 (lower is better)
Translates to: LGPTLHTEALRC*LLVGPDSEGPH
Trigger: ATGGGGACCCTCAGAGTCTGGACCCACCAGAAGTCAGCAACGCAAAGCTTCAGTATGCAGGGTGGGGCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 72 bp CTGGCCTTTTGGGCCCCACCCTGCATACTGAAGCTTTaGGTTGCTGACTTCTGGTGGGTCCAGACTCTGAGG +
Preference number: 6 (lower is better)
Translates to: LAFWAPPCILKL*VADFWWVQTLR
Trigger: CCTCAGAGTCTGGACCCACCAGAAGTCAGCAACGCAAAGCTTCAGTATGCAGGGTGGGGCCCAAAAGGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp TTTTCATCGGCCGTGGCGTGGATGATCAGGAACTGCTaGTCCTCCAGTGCTGACACTCGGTGTGCCAGCTTG +
Preference number: 6 (lower is better)
Translates to: FSSAVAWMIRNC*SSSADTRCASL
Trigger: CAAGCTGGCACACCGAGTGTCAGCACTGGAGGACCAGCAGTTCCTGATCATCCACGCCACGGCCGATGAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp TCATCTCCAGGTCGTGGGTGGGTCCATTCAAGCCGATaGCATGGAGCGAGATGCTGGGGTTTTCACTGCCAG +
Preference number: 6 (lower is better)
Translates to: SSPGRGWVHSSR*HGARCWGFHCQ
Trigger: CTGGCAGTGAAAACCCCAGCATCTCGCTCCATGTCATCGGCTTGAATGGACCCACCCACGACCTGGAGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp TCCAGGTCGTGGGTGGGTCCATTCAAGCCGATGACATaGAGCGAGATGCTGGGGTTTTCACTGCCAGCCTTA +
Preference number: 6 (lower is better)
Translates to: SRSWVGPFKPMT*SEMLGFSLPAL
Trigger: TAAGGCTGGCAGTGAAAACCCCAGCATCTCGCTCCATGTCATCGGCTTGAATGGACCCACCCACGACCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp GCTGGTCCTCCAGTGCTGACACTCGGTGTGCCAGCTTaGTCATCTCATACGCTCTGTTGTCGAGTCCATGGA +
Preference number: 6 (lower is better)
Translates to: AGPPVLTLGVPA*SSHTLCCRVHG
Trigger: TCCATGGACTCGACAACAGAGCGTATGAGATGACCAAGCTGGCACACCGAGTGTCAGCACTGGAGGACCAGC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 72 bp TGCTGGTCCTCCAGTGCTGACACTCGGTGTGCCAGCTaGGTCATCTCATACGCTCTGTTGTCGAGTCCATGG +
Preference number: 6 (lower is better)
Translates to: CWSSSADTRCAS*VISYALLSSPW
Trigger: CCATGGACTCGACAACAGAGCGTATGAGATGACCAAGCTGGCACACCGAGTGTCAGCACTGGAGGACCAGCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp CAGCGACCTTGGTGCTGGTGGCCCATTTCACCATGGTaGTGTAATATTCCCTCATGCGCGGGTCATCAGGTG +
Preference number: 6 (lower is better)
Translates to: QRPWCWWPISPW*CNIPSCAGHQV
Trigger: CACCTGATGACCCGCGCATGAGGGAATATTACATCACCATGGTGAAATGGGCCACCAGCACCAAGGTCGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp CCACCACGAGCAATAAGGGGTAGTGAGCTGTGTCGGTaGAGGTGGCCGGCTTCAAGATTTGCATTGGCAAGC +
Preference number: 6 (lower is better)
Translates to: PPRAIRGSELCR*RWPASRFALAS
Trigger: GCTTGCCAATGCAAATCTTGAAGCCGGCCACCTTCACCGACACAGCTCACTACCCCTTATTGCTCGTGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp GTTTCCCAGGTCACCTCAAACCTCTCTGTCACGCTCTaGCTCCCTGGGGTACCATCCACCACGAGCAATAAG +
Preference number: 6 (lower is better)
Translates to: VSQVTSNLSVTL*LPGVPSTTSNK
Trigger: CTTATTGCTCGTGGTGGATGGTACCCCAGGGAGTCAGAGCGTGACAGAGAGGTTTGAGGTGACCTGGGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp CAGTTCCTCTGTGGAGGATTACTCCCCACCAGCTCCTaGTCCTGCTGCTGTACAGATTTTCCTGAGGCGCTG +
Preference number: 6 (lower is better)
Translates to: QFLCGGLLPTSS*SCCCTDFPEAL
Trigger: CAGCGCCTCAGGAAAATCTGTACAGCAGCAGGATCAGGAGCTGGTGGGGAGTAATCCTCCACAGAGGAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101471.4
CDS CCA 72 bp GGTGATGTAATATTCCCTCATGCGCGGGTCATCAGGTaGCATCATCTCCAGGTCGTGGGTGGGTCCATTCAA +
Preference number: 6 (lower is better)
Translates to: GDVIFPHARVIR*HHLQVVGGSIQ
Trigger: TTGAATGGACCCACCCACGACCTGGAGATGATGCCACCTGATGACCCGCGCATGAGGGAATATTACATCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 72 bp ACTCGGTGTGCCAGCTTGGTCATCTCATACGCTCTGTaGTCGAGTCCATGGAGGCCAAGGTACCTCTCAGAA +
Preference number: 6 (lower is better)
Translates to: TRCASLVISYAL*SSPWRPRYLSE
Trigger: TTCTGAGAGGTACCTTGGCCTCCATGGACTCGACAACAGAGCGTATGAGATGACCAAGCTGGCACACCGAGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 90 bp GTCTGTTATTGGAGAGAGCGCAGAGCCGCAGGTGAAAGTCTGACCTaGATTTTCTCCCTTGGCTGGGAGGATGTAAGTGCTCAGGTACCC +
Preference number: 6 (lower is better)
Translates to: VCYWRERRAAGESLT*IFSLGWEDVSAQVP
Trigger: GGGTACCTGAGCACTTACATCCTCCCAGCCAAGGGAGAAAATCAAGGTCAGACTTTCACCTGCGGCTCTGCGCTCTCTCCAATAACAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 90 bp AGTGCTGACACTCGGTGTGCCAGCTTGGTCATCTCATACGCTCTGTaGTCGAGTCCATGGAGGCCAAGGTACCTCTCAGAAAATGCAGAG +
Preference number: 6 (lower is better)
Translates to: SADTRCASLVISYAL*SSPWRPRYLSENAE
Trigger: CTCTGCATTTTCTGAGAGGTACCTTGGCCTCCATGGACTCGACAACAGAGCGTATGAGATGACCAAGCTGGCACACCGAGTGTCAGCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 72 bp GATAAATATCAGCTGCTGGCCTTTTGGGCCCCACCCTaGATACTGAAGCTTTGCGTTGCTGACTTCTGGTGG +
Preference number: 6 (lower is better)
Translates to: DKYQLLAFWAPP*ILKLCVADFWW
Trigger: CCACCAGAAGTCAGCAACGCAAAGCTTCAGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTGATATTTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp CCCTGCATACTGAAGCTTTGCGTTGCTGACTTCTGGTaGGTCCAGACTCTGAGGGTCCCCATGAGGAATTTT +
Preference number: 6 (lower is better)
Translates to: PCILKLCVADFW*VQTLRVPMRNF
Trigger: AAAATTCCTCATGGGGACCCTCAGAGTCTGGACCCACCAGAAGTCAGCAACGCAAAGCTTCAGTATGCAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 90 bp GTGGTGTTATGCACAGTAACAGTGGGTACGCCAGGGCCTTCACACTaGAGCAGGAAGAAGTCCATGTTATGGCTGAAAGAAGCGCTGACA +
Preference number: 6 (lower is better)
Translates to: VVLCTVTVGTPGPSH*SRKKSMLWLKEALT
Trigger: TGTCAGCGCTTCTTTCAGCCATAACATGGACTTCTTCCTGCTCAAGTGTGAAGGCCCTGGCGTACCCACTGTTACTGTGCATAACACCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 72 bp GATCACGCCCTCCTTCCCTGTAGAGACCACTCGAATTaGCTGCTTTCCAACGTGTGCACAGTAGTAGATGTT +
Preference number: 6 (lower is better)
Translates to: DHALLPCRDHSN*LLSNVCTVVDV
Trigger: AACATCTACTACTGTGCACACGTTGGAAAGCAGGCAATTCGAGTGGTCTCTACAGGGAAGGAGGGCGTGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp AGCTTGGTCATCTCATACGCTCTGTTGTCGAGTCCATaGAGGCCAAGGTACCTCTCAGAAAATGCAGAGGCA +
Preference number: 6 (lower is better)
Translates to: SLVISYALLSSP*RPRYLSENAEA
Trigger: TGCCTCTGCATTTTCTGAGAGGTACCTTGGCCTCCATGGACTCGACAACAGAGCGTATGAGATGACCAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 72 bp GTCACATCCCAGTCTCCAGAGGTGATAGACTGGATGTaGTCATTGCTGCTGTTGGGCTGGGATGATGATACG +
Preference number: 6 (lower is better)
Translates to: VTSQSPEVIDWM*SLLLLGWDDDT
Trigger: CGTATCATCATCCCAGCCCAACAGCAGCAATGACAACATCCAGTCTATCACCTCTGGAGACTGGGATGTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 90 bp AGGATCTTGGTCACATCCCAGTCTCCAGAGGTGATAGACTGGATGTaGTCATTGCTGCTGTTGGGCTGGGATGATGATACGGTGATATGG +
Preference number: 6 (lower is better)
Translates to: RILVTSQSPEVIDWM*SLLLLGWDDDTVIW
Trigger: CCATATCACCGTATCATCATCCCAGCCCAACAGCAGCAATGACAACATCCAGTCTATCACCTCTGGAGACTGGGATGTGACCAAGATCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp AGCGCTGACATAGGTGCAGTTCTCCACCAAGTCACATaGCAGACACTGCCTGTTGAAGTCATCTACCGTGTT +
Preference number: 6 (lower is better)
Translates to: SADIGAVLHQVT*QTLPVEVIYRV
Trigger: AACACGGTAGATGACTTCAACAGGCAGTGTCTGTCATGTGACTTGGTGGAGAACTGCACCTATGTCAGCGCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp CAAGGTACCTCTCAGAAAATGCAGAGGCATAGAGTTTaGAGTCTGTTATTGGAGAGAGCGCAGAGCCGCAGG +
Preference number: 6 (lower is better)
Translates to: QGTSQKMQRHRV*SLLLERAQSRR
Trigger: CCTGCGGCTCTGCGCTCTCTCCAATAACAGACTTCAAACTCTATGCCTCTGCATTTTCTGAGAGGTACCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp AAGTCAGAACAATGGGGTCTCTGGTTGTATCGCATCTaGTCCTGCTGCTGTACAGATTTTCCTGAGGCGCTG +
Preference number: 6 (lower is better)
Translates to: KSEQWGLWLYRI*SCCCTDFPEAL
Trigger: CAGCGCCTCAGGAAAATCTGTACAGCAGCAGGATCAGATGCGATACAACCAGAGACCCCATTGTTCTGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148039.8
CDS GCA 72 bp TCCAAGTCAAACATTCTTCTCTTGTCCGTGGTGTTATaGACAGTAACAGTGGGTACGCCAGGGCCTTCACAC +
Preference number: 6 (lower is better)
Translates to: SKSNILLLSVVL*TVTVGTPGPSH
Trigger: GTGTGAAGGCCCTGGCGTACCCACTGTTACTGTGCATAACACCACGGACAAGAGAAGAATGTTTGACTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp TACGGTGATATGGTAGAATTTACCCCGGCCTCCCTGTaGGATCGCTCTGACAAAGAAAAACTTCCTGCCATC +
Preference number: 6 (lower is better)
Translates to: YGDMVEFTPASL*DRSDKEKLPAI
Trigger: GATGGCAGGAAGTTTTTCTTTGTCAGAGCGATCCCACAGGGAGGCCGGGGTAAATTCTACCATATCACCGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp GCAGGTGAAAGTCTGACCTTGATTTTCTCCCTTGGCTaGGAGGATGTAAGTGCTCAGGTACCCACCATAATC +
Preference number: 6 (lower is better)
Translates to: AGESLTLIFSLG*EDVSAQVPTII
Trigger: GATTATGGTGGGTACCTGAGCACTTACATCCTCCCAGCCAAGGGAGAAAATCAAGGTCAGACTTTCACCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 72 bp TGCACAGTAACAGTGGGTACGCCAGGGCCTTCACACTaGAGCAGGAAGAAGTCCATGTTATGGCTGAAAGAA +
Preference number: 6 (lower is better)
Translates to: CTVTVGTPGPSH*SRKKSMLWLKE
Trigger: TTCTTTCAGCCATAACATGGACTTCTTCCTGCTCAAGTGTGAAGGCCCTGGCGTACCCACTGTTACTGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp AGTTCTCCACCAAGTCACATGACAGACACTGCCTGTTaGAGTCATCTACCGTGTTGGCACTGTAGAGATGTC +
Preference number: 6 (lower is better)
Translates to: SSPPSHMTDTAC*SHLPCWHCRDV
Trigger: GACATCTCTACAGTGCCAACACGGTAGATGACTTCAACAGGCAGTGTCTGTCATGTGACTTGGTGGAGAACT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp GTTGTTCTCAAAGATAAATATCAGCTGCTGGCCTTTTaGGCCCCACCCTGCATACTGAAGCTTTGCGTTGCT +
Preference number: 6 (lower is better)
Translates to: VVLKDKYQLLAF*APPCILKLCVA
Trigger: AGCAACGCAAAGCTTCAGTATGCAGGGTGGGGCCCAAAAGGCCAGCAGCTGATATTTATCTTTGAGAACAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 72 bp CACTGTAGAGATGTCGTCTCCGTGGCAGGTCTTCTGTaGTCAGGAAATAGATCTTATTCCGCTTCTCATCAT +
Preference number: 6 (lower is better)
Translates to: HCRDVVSVAGLL*SGNRSYSASHH
Trigger: ATGATGAGAAGCGGAATAAGATCTATTTCCTGAGCACAGAAGACCTGCCACGGAGACGACATCTCTACAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 72 bp CTGCCGGTCGTTGATAGCCTTCTGAACTTCCTCATTTaGTTCCAAGTCAAACATTCTTCTCTTGTCCGTGGT +
Preference number: 6 (lower is better)
Translates to: LPVVDSLLNFLI*FQVKHSSLVRG
Trigger: ACCACGGACAAGAGAAGAATGTTTGACTTGGAAGCAAATGAGGAAGTTCAGAAGGCTATCAACGACCGGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 72 bp TTCCCAAACACAGCTACCCGAGTCTTGTCAATATACTaGTCCTTCAGCATAGTTCTTACAGCTTCCATCTGG +
Preference number: 6 (lower is better)
Translates to: FPNTATRVLSIY*SFSIVLTASIW
Trigger: CCAGATGGAAGCTGTAAGAACTATGCTGAAGGAGCAGTATATTGACAAGACTCGGGTAGCTGTGTTTGGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp TCCTCCTCTTTTGCTGTGGCTGTTGGTAGCTTATCTTaGACTCTGAAACATTCCACAAAGAAGCCGATGATG +
Preference number: 6 (lower is better)
Translates to: SSSFAVAVGSLS*TLKHSTKKPMM
Trigger: CATCATCGGCTTCTTTGTGGAATGTTTCAGAGTCCAAGATAAGCTACCAACAGCCACAGCAAAAGAGGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 72 bp GTGAGCTGTGTCGGTGAAGGTGGCCGGCTTCAAGATTaGCATTGGCAAGCTGTAATCTTCTACTTCAATTTT +
Preference number: 6 (lower is better)
Translates to: VSCVGEGGRLQD*HWQAVIFYFNF
Trigger: AAAATTGAAGTAGAAGATTACAGCTTGCCAATGCAAATCTTGAAGCCGGCCACCTTCACCGACACAGCTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS TCA 72 bp TCAATCTTCGGCATCTGCCGGTCGTTGATAGCCTTCTaGACTTCCTCATTTGCTTCCAAGTCAAACATTCTT +
Preference number: 6 (lower is better)
Translates to: SIFGICRSLIAF*TSSFASKSNIL
Trigger: AAGAATGTTTGACTTGGAAGCAAATGAGGAAGTTCAGAAGGCTATCAACGACCGGCAGATGCCGAAGATTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 72 bp ACTTCCTCATTTGCTTCCAAGTCAAACATTCTTCTCTaGTCCGTGGTGTTATGCACAGTAACAGTGGGTACG +
Preference number: 6 (lower is better)
Translates to: TSSFASKSNILL*SVVLCTVTVGT
Trigger: CGTACCCACTGTTACTGTGCATAACACCACGGACAAGAGAAGAATGTTTGACTTGGAAGCAAATGAGGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 90 bp CCCATGAGGAATTTTGCTCAGAACATAATATCCAGTGTGGGAGTGTaGGTATACCGGCTCCACATTATAGGAGAACAGCACATACTCTTT +
Preference number: 6 (lower is better)
Translates to: PMRNFAQNIISSVGV*VYRLHIIGEQHILF
Trigger: AAAGAGTATGTGCTGTTCTCCTATAATGTGGAGCCGGTATACCAACACTCCCACACTGGATATTATGTTCTGAGCAAAATTCCTCATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CAA 72 bp AATTTTGCTCAGAACATAATATCCAGTGTGGGAGTGTaGGTATACCGGCTCCACATTATAGGAGAACAGCAC +
Preference number: 6 (lower is better)
Translates to: NFAQNIISSVGV*VYRLHIIGEQH
Trigger: GTGCTGTTCTCCTATAATGTGGAGCCGGTATACCAACACTCCCACACTGGATATTATGTTCTGAGCAAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS GCA 72 bp TGTAGAGACCACTCGAATTGCCTGCTTTCCAACGTGTaGACAGTAGTAGATGTTGTTCTCAAAGATAAATAT +
Preference number: 6 (lower is better)
Translates to: CRDHSNCLLSNV*TVVDVVLKDKY
Trigger: ATATTTATCTTTGAGAACAACATCTACTACTGTGCACACGTTGGAAAGCAGGCAATTCGAGTGGTCTCTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8
CDS CCA 72 bp AATTCCTTATTGCTTATCCACTTTGCCTCTGGGTCATaGATTTTGAAGTCTTCACTGAAGAGATCTTCCACA +
Preference number: 6 (lower is better)
Translates to: NSLLLIHFASGS*ILKSSLKRSST
Trigger: TGTGGAAGATCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGGATAAGCAATAAGGAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071500.13
ENSMUST00000101471.4
ENSMUST00000120555.8
ENSMUST00000122171.8