RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DPP10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036815

Ensembl transcript IDs: ENSMUST00000112603.4, ENSMUST00000112606.8, ENSMUST00000239072.2

Found 389 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGAGCATGTGTCCTTCTTACCAGTTGGGACATCTTCTGGATATATaGCCAGGAGAGGTATTGCGGGATCCTCCGGTAGTACTAGCTGAG +
Preference number: 1 (lower is better)
Translates to: WSMCPSYQLGHLLDI*PGEVLRDPPVVLAE
Trigger: CTCAGCTAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACATGCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp TATATGCCCAGGAGAGGTATTGCGGGATCCTCCGGTAGTACTAGCTaGGACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGGAT +
Preference number: 1 (lower is better)
Translates to: YMPRRGIAGSSGSTS*DKRMDHLETAISRD
Trigger: ATCCCTGGATATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp CTACTGCTAGCGGGAGAGACAGATGCCGTGTCATGCGCATGTCTCTaGGAGTGTAAATTGAGGTCTGGATTCCAGAAGAATGACAGGAAC +
Preference number: 1 (lower is better)
Translates to: LLLAGETDAVSCACL*ECKLRSGFQKNDRN
Trigger: GTTCCTGTCATTCTTCTGGAATCCAGACCTCAATTTACACTCTCAGAGACATGCGCATGACACGGCATCTGTCTCTCCCGCTAGCAGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp CGTGTGCAGAAGGATCCTGTTACAGCTTCATTCTTCCTGGCCAGTTaGGCGCGCAATAGGCAATGGCTTGAATCATTCTCCTATGGTATC +
Preference number: 1 (lower is better)
Translates to: RVQKDPVTASFFLAS*ARNRQWLESFSYGI
Trigger: GATACCATAGGAGAATGATTCAAGCCATTGCCTATTGCGCGCTCAACTGGCCAGGAAGAATGAAGCTGTAACAGGATCCTTCTGCACACG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp AAATTGAGGTCTGGATTCCAGAAGAATGACAGGAACCATGAGAGCTaGCATGCCTTGGGTTTTAGACCCCTCATGACCTCAGAGGGCTCT +
Preference number: 1 (lower is better)
Translates to: KLRSGFQKNDRNHES*HALGFRPLMTSEGS
Trigger: AGAGCCCTCTGAGGTCATGAGGGGTCTAAAACCCAAGGCATGTCAGCTCTCATGGTTCCTGTCATTCTTCTGGAATCCAGACCTCAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp GAGAGACAGATGCCGTGTCATGCGCATGTCTCTGAGAGTGTAAATTaGGGTCTGGATTCCAGAAGAATGACAGGAACCATGAGAGCTGAC +
Preference number: 1 (lower is better)
Translates to: ERQMPCHAHVSESVN*GLDSRRMTGTMRAD
Trigger: GTCAGCTCTCATGGTTCCTGTCATTCTTCTGGAATCCAGACCTCAATTTACACTCTCAGAGACATGCGCATGACACGGCATCTGTCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 90 bp GAGGTGGGACCTTGCTTGAAGAAGTACAGCAGTAGTGGGCAGATTTaGGGATTTATAACCTGGCCTCTCTCTGCTTGTTCTCTCTCTGTT +
Preference number: 1 (lower is better)
Translates to: EVGPCLKKYSSSGQI*GFITWPLSACSLSV
Trigger: AACAGAGAGAGAACAAGCAGAGAGAGGCCAGGTTATAAATCCCCAAATCTGCCCACTACTGCTGTACTTCTTCAAGCAAGGTCCCACCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 90 bp CCCACTGGGTTTGAGATAAAGTGCCTGCTCATTCTCCTTTGTGTATaGCATACTAACCAGTCCAGGAACTTCTGGGTTTTGCCAGTCTCC +
Preference number: 1 (lower is better)
Translates to: PTGFEIKCLLILLCV*HTNQSRNFWVLPVS
Trigger: GGAGACTGGCAAAACCCAGAAGTTCCTGGACTGGTTAGTATGCCATACACAAAGGAGAATGAGCAGGCACTTTATCTCAAACCCAGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 90 bp GTGGAGTGCAGGCCATTAATAAAACACCAGACTGTGGAACCAGGCTaGCATAAGAGAATTGTGAGAAGAATGGCCAGGAATCCCAGAGTA +
Preference number: 1 (lower is better)
Translates to: VECRPLIKHQTVEPG*HKRIVRRMARNPRV
Trigger: TACTCTGGGATTCCTGGCCATTCTTCTCACAATTCTCTTATGGCAGCCTGGTTCCACAGTCTGGTGTTTTATTAATGGCCTGCACTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTaGAGTGAGAAAGCCACAGGAGGCTGGCTAGCACTCACTGTGGCA +
Preference number: 1 (lower is better)
Translates to: FCCMRTFQDQSTCKS*SEKATGGWLALTVA
Trigger: TGCCACAGTGAGTGCTAGCCAGCCTCCTGTGGCTTTCTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 90 bp CCCTCAAGACAGTCTGCTGTGGGAATGAAGGGAGCTTTGGAATTTTaGAATTGTGGGGGCAGGTTTAGGCTCATAATACATAGGAGTAGC +
Preference number: 1 (lower is better)
Translates to: PSRQSAVGMKGALEF*NCGGRFRLIIHRSS
Trigger: GCTACTCCTATGTATTATGAGCCTAAACCTGCCCCCACAATTCCAAAATTCCAAAGCTCCCTTCATTCCCACAGCAGACTGTCTTGAGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp TTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTaGGAAAGCCACAGGAGGCTGGCTAGCACTCACTGTGGCACTTAT +
Preference number: 1 (lower is better)
Translates to: LYEDISRPINMQKLE*ESHRRLASTHCGTY
Trigger: ATAAGTGCCACAGTGAGTGCTAGCCAGCCTCCTGTGGCTTTCTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp CAGATGTTGGGATGTAATGAGAATCACACTTGCTTGAAGTGCATATaGATGGGGAAGTCCTGTTACCTGTGCTTCCTTGCCAGGCCTTTT +
Preference number: 1 (lower is better)
Translates to: QMLGCNENHTCLKCI*MGKSCYLCFLARPF
Trigger: AAAAGGCCTGGCAAGGAAGCACAGGTAACAGGACTTCCCCATTCATATGCACTTCAAGCAAGTGTGATTCTCATTACATCCCAACATCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp GCTGACCTGACCATACCTCAAAGCCACATGTTGGAAAGAGACATCTaGCAATTGTCCTCGGACCTCCATGTGAATTCATTAGAAGTAGCA +
Preference number: 1 (lower is better)
Translates to: ADLTIPQSHMLERDI*QLSSDLHVNSLEVA
Trigger: TGCTACTTCTAATGAATTCACATGGAGGTCCGAGGACAATTGTCAGATGTCTCTTTCCAACATGTGGCTTTGAGGTATGGTCAGGTCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 90 bp TCTGGGTTTTGCCAGTCTCCACTTCCTATATCTGCACAGAAGCTCTaGGATTACAGAGATGTGCCACTGTGTCTAACTTTATGTAGGTTC +
Preference number: 1 (lower is better)
Translates to: SGFCQSPLPISAQKL*DYRDVPLCLTLCRF
Trigger: GAACCTACATAAAGTTAGACACAGTGGCACATCTCTGTAATCCCAGAGCTTCTGTGCAGATATAGGAAGTGGAGACTGGCAAAACCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 90 bp ACTAATCTCTCAGAACTGCACACCTGTCAGCCTTTACTATTCTCCTaGAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAA +
Preference number: 1 (lower is better)
Translates to: TNLSELHTCQPLLFS*RWCKRTPWKSAQRK
Trigger: TTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATAGTAAAGGCTGACAGGTGTGCAGTTCTGAGAGATTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp ATCCTAAAGGACAGATGTTGGGATGTAATGAGAATCACACTTGCTTaGAGTGCATATGAATGGGGAAGTCCTGTTACCTGTGCTTCCTTG +
Preference number: 1 (lower is better)
Translates to: ILKDRCWDVMRITLA*SAYEWGSPVTCASL
Trigger: CAAGGAAGCACAGGTAACAGGACTTCCCCATTCATATGCACTTCAAGCAAGTGTGATTCTCATTACATCCCAACATCTGTCCTTTAGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 90 bp TACACTAGATATTGTTTCTTGAGTCCCACTGGGTTTGAGATAAAGTaGCTGCTCATTCTCCTTTGTGTATGGCATACTAACCAGTCCAGG +
Preference number: 1 (lower is better)
Translates to: YTRYCFLSPTGFEIK*LLILLCVWHTNQSR
Trigger: CCTGGACTGGTTAGTATGCCATACACAAAGGAGAATGAGCAGGCACTTTATCTCAAACCCAGTGGGACTCAAGAAACAATATCTAGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 90 bp AAGCTGCCCTTAGAATTCTGGAGCGTCTACAACAAGACAGTCTCTTaGTTCAGTTTCATTGAGCCTCAATATTCCCTTCAGCTCTGTATA +
Preference number: 1 (lower is better)
Translates to: KLPLEFWSVYNKTVS*FSFIEPQYSLQLCI
Trigger: TATACAGAGCTGAAGGGAATATTGAGGCTCAATGAAACTGAACCAAGAGACTGTCTTGTTGTAGACGCTCCAGAATTCTAAGGGCAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR CCA 90 bp GGGGAACCTCAAACATTGATCTCTGAGAGGTTTGAATTGATTTGTTaGTGGAGAGGTCAGCCATTGGTTACAGTATTATTGCTCGATGGT +
Preference number: 1 (lower is better)
Translates to: GEPQTLISERFELIC*WRGQPLVTVLLLDG
Trigger: ACCATCGAGCAATAATACTGTAACCAATGGCTGACCTCTCCACCAACAAATCAATTCAAACCTCTCAGAGATCAATGTTTGAGGTTCCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 90 bp GTAACTGGGTTTCAATGGTGGATTTGGACCTGCCTATATTTCCTGTaGCTAGATATCTTCTTTTCTCTTAGAGAATTCCCAAACCAGGAC +
Preference number: 1 (lower is better)
Translates to: VTGFQWWIWTCLYFL*LDIFFSLREFPNQD
Trigger: GTCCTGGTTTGGGAATTCTCTAAGAGAAAAGAAGATATCTAGGCACAGGAAATATAGGCAGGTCCAAATCCACCATTGAAACCCAGTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp CCATGTCCAAGTCTGGCAGCATCTCAACTGAGATACAGAGGCACATaGTGGGTTACAAGCATACAGCAAATCATCTTTTCTCAATTAATT +
Preference number: 1 (lower is better)
Translates to: PCPSLAASQLRYRGT*WVTSIQQIIFSQLI
Trigger: AATTAATTGAGAAAAGATGATTTGCTGTATGCTTGTAACCCATCATGTGCCTCTGTATCTCAGTTGAGATGCTGCCAGACTTGGACATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 90 bp GGAAATAAATTACATTCACAGCAGCTTACACTAATCTCTCAGAACTaGACACCTGTCAGCCTTTACTATTCTCCTGCAGGTGGTGTAAAA +
Preference number: 1 (lower is better)
Translates to: GNKLHSQQLTLISQN*TPVSLYYSPAGGVK
Trigger: TTTTACACCACCTGCAGGAGAATAGTAAAGGCTGACAGGTGTGCAGTTCTGAGAGATTAGTGTAAGCTGCTGTGAATGTAATTTATTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp TTTAATGAGAATAACTGTGTGAACTGGAAGCCAAAGTTCATGTTTTaGACTGCATCCCCATCCTTTCACACCATAGAGAACAACCATCCT +
Preference number: 1 (lower is better)
Translates to: FNENNCVNWKPKFMF*TASPSFHTIENNHP
Trigger: AGGATGGTTGTTCTCTATGGTGTGAAAGGATGGGGATGCAGTTCAAAACATGAACTTTGGCTTCCAGTTCACACAGTTATTCTCATTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 90 bp AGGAGAGATTTTTATGTTCACATGTTTCATCAACAAACATGCTTTTaGCTTAGAATGACTCTAGCAGTAGGGCTCCTAGAACCAAGGTTG +
Preference number: 1 (lower is better)
Translates to: RRDFYVHMFHQQTCF*LRMTLAVGLLEPRL
Trigger: CAACCTTGGTTCTAGGAGCCCTACTGCTAGAGTCATTCTAAGCCAAAAGCATGTTTGTTGATGAAACATGTGAACATAAAAATCTCTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp AAGGGAGATATAAACAAGGGAGATATAAACAAGAAGAAACAGGACTaGATAAACGTGTGCAGAAGGATCCTGTTACAGCTTCATTCTTCC +
Preference number: 1 (lower is better)
Translates to: KGDINKGDINKKKQD*INVCRRILLQLHSS
Trigger: GGAAGAATGAAGCTGTAACAGGATCCTTCTGCACACGTTTATTCAGTCCTGTTTCTTCTTGTTTATATCTCCCTTGTTTATATCTCCCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp CACACACACACACACTCCTGCTTTGCTGTAGGTGCTCCACATACATaGATGTTCTTACAAAAACAACAAGAGAGTATAAATCAACTCAAA +
Preference number: 1 (lower is better)
Translates to: HTHTHSCFAVGAPHT*MFLQKQQESINQLK
Trigger: TTTGAGTTGATTTATACTCTCTTGTTGTTTTTGTAAGAACATTCATGTATGTGGAGCACCTACAGCAAAGCAGGAGTGTGTGTGTGTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 90 bp TTGCAAGACGTTGATTTGCATGACCCTTATTTACATGGCAGATGCTaGACAACTGGAAATAAATTACATTCACAGCAGCTTACACTAATC +
Preference number: 1 (lower is better)
Translates to: LQDVDLHDPYLHGRC*TTGNKLHSQQLTLI
Trigger: GATTAGTGTAAGCTGCTGTGAATGTAATTTATTTCCAGTTGTGCAGCATCTGCCATGTAAATAAGGGTCATGCAAATCAACGTCTTGCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 90 bp GATTTGCAAGACGTTGATTTGCATGACCCTTATTTACATGGCAGATaGTGCACAACTGGAAATAAATTACATTCACAGCAGCTTACACTA +
Preference number: 1 (lower is better)
Translates to: DLQDVDLHDPYLHGR*CTTGNKLHSQQLTL
Trigger: TAGTGTAAGCTGCTGTGAATGTAATTTATTTCCAGTTGTGCAGCATCTGCCATGTAAATAAGGGTCATGCAAATCAACGTCTTGCAAATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 90 bp ACTATGAATCCTTTATACTTTGCTCAGACGTCTCAAGATCTCCTTTaGTATTCAGAGTCTTTTGTAGCTTCCCTTAACCTTCAAGTTTAT +
Preference number: 1 (lower is better)
Translates to: TMNPLYFAQTSQDLL*YSESFVASLNLQVY
Trigger: ATAAACTTGAAGGTTAAGGGAAGCTACAAAAGACTCTGAATACCAAAGGAGATCTTGAGACGTCTGAGCAAAGTATAAAGGATTCATAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp CAATGCCAAGAGCCATTAATAAGCTATTTCTTGGTCCTTATTTACTaGGTACGTAATGCTCTCAATGAGAGTAGGAAAAACAAATTTGCT +
Preference number: 1 (lower is better)
Translates to: QCQEPLISYFLVLIY*VRNALNESRKNKFA
Trigger: AGCAAATTTGTTTTTCCTACTCTCATTGAGAGCATTACGTACTCAGTAAATAAGGACCAAGAAATAGCTTATTAATGGCTCTTGGCATTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 90 bp AACAAGTTTCCAGAAGCAGCTAAGCACTTAACTAGACAAAGGAATTaGAGCTCCTTTGAATTTTATATTTGCTTACTAACAGTCAGGAGA +
Preference number: 1 (lower is better)
Translates to: NKFPEAAKHLTRQRN*SSFEFYICLLTVRR
Trigger: TCTCCTGACTGTTAGTAAGCAAATATAAAATTCAAAGGAGCTTCAATTCCTTTGTCTAGTTAAGTGCTTAGCTGCTTCTGGAAACTTGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAACAGCCCACTCACTCCTaGTTCCTGGCCCTGGCATTC +
Preference number: 2 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKQPTHS*FLALAF
Trigger: GAATGCCAGGGCCAGGAAGCAGGAGTGAGTGGGCTG...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGGCAGCACAGTAGTGTaGATGTCTGTCTCCAAGGTC +
Preference number: 2 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRGSTVV*MSVSKV
Trigger: GACCTTGGAGACAGACATCCACACTACTGTGCTGCC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTGCAGGCATGGAATGCTaGGTAGACTCTGGGGAAAAA +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAAGMEC*VDSGEK
Trigger: TTTTTCCCCAGAGTCTACTCAGCATTCCATGCCTGC...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAATGCAAAAGCTGGAGTaGGAAAGCCACAGGAGGCTG +
Preference number: 2 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKMQKLE*ESHRRL
Trigger: CAGCCTCCTGTGGCTTTCTCACTCCAGCTTTTGCAT...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAGGTCTCAGCTGGCAGTaGTGTTTGGGGGTGAGGAGG +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLGLSWQ*CLGVRR
Trigger: CCTCCTCACCCCCAAACAGCACTGCCAGCTGAGACC...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGAGCGGGAGAGACAGATaGCGTGTCATGCGCATGTCT +
Preference number: 2 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSESGRDR*RVMRMS
Trigger: AGACATGCGCATGACACGGCATCTGTCTCTCCCGCT...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 90 bp TGTGCAGGTGAACGGAGGACAGAAGACTACACTAGATATTGTTTCTaGAGTCCCACTGGGTTTGAGATAAAGTGCCTGCTCATTCTCCTT +
Preference number: 2 (lower is better)
Translates to: CAGERRTEDYTRYCF*SPTGFEIKCLLILL
Trigger: AAGGAGAATGAGCAGGCACTTTATCTCAAACCCAGTGGGACTCAAGAAACAATATCTAGTGTAGTCTTCTGTCCTCCGTTCACCTGCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 90 bp AGAGAATTGCCCTCAAGACAGTCTGCTGTGGGAATGAAGGGAGCTTaGGAATTTTGGAATTGTGGGGGCAGGTTTAGGCTCATAATACAT +
Preference number: 2 (lower is better)
Translates to: RELPSRQSAVGMKGA*EFWNCGGRFRLIIH
Trigger: ATGTATTATGAGCCTAAACCTGCCCCCACAATTCCAAAATTCCAAAGCTCCCTTCATTCCCACAGCAGACTGTCTTGAGGGCAATTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACACTACTGACAACTGCCTaGACTTTGGAAGGTGCTGAA +
Preference number: 2 (lower is better)
Translates to: PSPPREQYATQWHCICLTLLTTA*TLEGAE
Trigger: TTCAGCACCTTCCAAAGTTCAGGCAGTTGTCAGTAG...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGACTACTGACAACTGCCTaGACTTTGGAAGGTGCTGAA +
Preference number: 2 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRLLTTA*TLEGAE
Trigger: TTCAGCACCTTCCAAAGTTCAGGCAGTTGTCAGTAG...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGGCAGGCATGGAATGCTaGGTAGACTCTGGGGAAAAA +
Preference number: 2 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEAGMEC*VDSGEK
Trigger: TTTTTCCCCAGAGTCTACTCAGCATTCCATGCCTGC...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAAGAGGAATGTGCAACTaGGGTCACTGGGATTCAAGA +
Preference number: 2 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKRGMCN*GHWDSR
Trigger: TCTTGAATCCCAGTGACCTCAGTTGCACATTCCTCT...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTCTATCTACTGACAACTaGCTGAACTTTGGAAGGTGC +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIALSTDN*LNFGRC
Trigger: GCACCTTCCAAAGTTCAGGCAGTTGTCAGTAGATAG...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR GCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAACCAAGAGAGCAATATaGCACTCAGTGGCATTGCAT +
Preference number: 2 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRTKRAI*HSVALH
Trigger: ATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR GCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTACCAAGAGAGCAATATaGCACTCAGTGGCATTGCAT +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIATKRAI*HSVALH
Trigger: ATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR CCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGCAGTCCAGGAACTTCTaGGTTTTGCCAGTCTCCACT +
Preference number: 2 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEQSRNF*VLPVST
Trigger: AGTGGAGACTGGCAAAACCCAGAAGTTCCTGGACTG...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 90 bp ATTCTGATTCTGGTTCCCTCAGAAAGGTGCCTGAGATTTGGCAACTaGAACAAGTTTCCAGAAGCAGCTAAGCACTTAACTAGACAAAGG +
Preference number: 2 (lower is better)
Translates to: ILILVPSERCLRFGN*NKFPEAAKHLTRQR
Trigger: CCTTTGTCTAGTTAAGTGCTTAGCTGCTTCTGGAAACTTGTTCAAGTTGCCAAATCTCAGGCACCTTTCTGAGGGAACCAGAATCAGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAAACTTCCCTTTACAATaGAACACCTTCTGCACCCTT +
Preference number: 2 (lower is better)
Translates to: PSPPREQYATQWHCICLTNFPLQ*NTFCTL
Trigger: AAGGGTGCAGAAGGTGTTTCATTGTAAAGGGAAGTT...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTAACTTCCCTTTACAATaGAACACCTTCTGCACCCTT +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIANFPLQ*NTFCTL
Trigger: AAGGGTGCAGAAGGTGTTTCATTGTAAAGGGAAGTT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGGTGATCATGACCATTaGAATCAAAGTGAGGGTAAC +
Preference number: 2 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRGDHDH*NQSEGN
Trigger: GTTACCCTCACTTTGATTTCAATGGTCATGATCACC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTGGTGATCATGACCATTaGAATCAAAGTGAGGGTAAC +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAGDHDH*NQSEGN
Trigger: GTTACCCTCACTTTGATTTCAATGGTCATGATCACC...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAGGTGATCATGACCATTaGAATCAAAGTGAGGGTAAC +
Preference number: 2 (lower is better)
Translates to: PSPPREQYATQWHCICLTGDHDH*NQSEGN
Trigger: GTTACCCTCACTTTGATTTCAATGGTCATGATCACC...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGCTACTGACAACTGCCTaGACTTTGGAAGGTGCTGAA +
Preference number: 2 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSELLTTA*TLEGAE
Trigger: TTCAGCACCTTCCAAAGTTCAGGCAGTTGTCAGTAG...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGCTCTCTGCCCTCTCATaGCTGAAACTTCACACAGTT +
Preference number: 2 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWLSALS*LKLHTV
Trigger: AACTGTGTGAAGTTTCAGTCATGAGAGGGCAGAGAG...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAAGGAGAAGACACCTGTaGGCATTTCTTTTGTGTGAC +
Preference number: 2 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKRRRHL*AFLLCD
Trigger: GTCACACAAAAGAAATGCTCACAGGTGTCTTCTCCT...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGCTAGCAAGCATTGGCTaGAAGGACCCTGATATAGCT +
Preference number: 2 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSELASIG*KDPDIA
Trigger: AGCTATATCAGGGTCCTTTCAGCCAATGCTTGCTAG...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTCTCACTGTCTGCATATaGACACGTGCGTGTATATAT +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIALTVCI*TRACIY
Trigger: ATATATACACGCACGTGTGCATATGCAGACAGTGAG...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR GCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACACTCACTGTCTGCATATaGACACGTGCGTGTATATAT +
Preference number: 2 (lower is better)
Translates to: PSPPREQYATQWHCICLTLTVCI*TRACIY
Trigger: ATATATACACGCACGTGTGCATATGCAGACAGTGAG...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR GCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAACCCCTTAAAAGTAGGTaGTTTGTCCACAGCTGGTAT +
Preference number: 2 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKPLKSR*FVHSWY
Trigger: ATACCAGCTGTGGACAAAGCACCTACTTTTAAGGGG...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGACAACTGCCTGAACTTTaGAAGGTGCTGAAATCCATA +
Preference number: 2 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRQLPEL*KVLKSI
Trigger: TATGGATTTCAGCACCTTCCAAAGTTCAGGCAGTTG...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR CCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAACTGCATATGTATCACTaGAAAGAGAGGCCCATTGGA +
Preference number: 2 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKLHMYH*KERPIG
Trigger: TCCAATGGGCCTCTCTTTCCAGTGATACATATGCAG...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 90 bp CATGGAGGAAGCTTGGCATTGAAGTCTCAGGAAACCTTCAGAATTTaGAATATGCAGAAAAACATTGGGATGCATCTGAGGCAAGAGTGT +
Preference number: 2 (lower is better)
Translates to: HGGSLALKSQETFRI*NMQKNIGMHLRQEC
Trigger: ACACTCTTGCCTCAGATGCATCCCAATGTTTTTCTGCATATTCAAAATTCTGAAGGTTTCCTGAGACTTCAATGCCAAGCTTCCTCCATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTTTGGTTCAGTTTCATTaGGCCTCAATATTCCCTTCA +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIALVQFH*ASIFPS
Trigger: TGAAGGGAATATTGAGGCTCAATGAAACTGAACCAA...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTAAGTATTCTATCTACTaGCAACTGCCTGAACTTTGG +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAKYSIY*QLPELW
Trigger: CCAAAGTTCAGGCAGTTGTCAGTAGATAGAATACTT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAAAGTATTCTATCTACTaGCAACTGCCTGAACTTTGG +
Preference number: 2 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRKYSIY*QLPELW
Trigger: CCAAAGTTCAGGCAGTTGTCAGTAGATAGAATACTT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAACTGCACTGAGAGTTTaGAGTAAAAGGTTTGAGTGT +
Preference number: 2 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRTALRV*SKRFEC
Trigger: ACACTCAAACCTTTTACTTCAAACTCTCAGTGCAGT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAAGGTGGGACCTTGCTTaGAGAAGTACAGCAGTAGTG +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLRWDLA*RSTAVV
Trigger: CACTACTGCTGTACTTCTTCAAGCAAGGTCCCACCT...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAAACAAGACAGTCTCTTaGTTCAGTTTCATTGAGCCT +
Preference number: 2 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRNKTVS*FSFIEP
Trigger: AGGCTCAATGAAACTGAACCAAGAGACTGTCTTGTT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR CCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAAACAAGACAGTCTCTTaGTTCAGTTTCATTGAGCCT +
Preference number: 2 (lower is better)
Translates to: PSPPREQYATQWHCICLTNKTVS*FSFIEP
Trigger: AGGCTCAATGAAACTGAACCAAGAGACTGTCTTGTT...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR CCA 90 bp ACCATAGAGAACAACAGAGCAACAGAACCTCCTTTATGTAATTTGAAAGTGAAAGGCAGCACAGTAGTGTaGATGTCTGTCTCCAAGGTC +
Preference number: 2 (lower is better)
Translates to: TIENNRATEPPLCNLKVKGSTVV*MSVSKV
Trigger: GACCTTGGAGACAGACATCCACACTACTGTGCTGCC...TTTCACTTTCAAATTACATAAAGGAGGTTCTGTTGCTCTGTTGTTCTCTATGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGGGTCTCATCATATTTaGCTCAATAAAGAAGCATCC +
Preference number: 2 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRGSHHI*LNKEAS
Trigger: GGATGCTTCTTTATTGAGCCAAATATGATGAGACCC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR CCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGTGGGGATTTATAACCTaGCCTCTCTCTGCTTGTTCT +
Preference number: 2 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEWGFIT*PLSACS
Trigger: AGAACAAGCAGAGAGAGGCCAGGTTATAAATCCCCA...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAACTGGGTTTCAATGGTaGATTTGGACCTGCCTATAT +
Preference number: 2 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKTGFQW*IWTCLY
Trigger: ATATAGGCAGGTCCAAATCCACCATTGAAACCCAGT...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 90 bp AGAACCAGCTTTCAAGTCCACACCTTAGAATCCCAGGCTGTGCAGTaGATAAAGCCTAGGGTGGCTGAAGAAATTCTTTACTTTAAAATT +
Preference number: 2 (lower is better)
Translates to: RTSFQVHTLESQAVQ*IKPRVAEEILYFKI
Trigger: AATTTTAAAGTAAAGAATTTCTTCAGCCACCCTAGGCTTTATCAACTGCACAGCCTGGGATTCTAAGGTGTGGACTTGAAAGCTGGTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR TCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAATCTGTTATATGGACTaGAAACACACCCAACTTCAG +
Preference number: 2 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKICYMD*KHTQLQ
Trigger: CTGAAGTTGGGTGTGTTTTCAGTCCATATAACAGAT...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTATGTGGAGTGGCCAAATaGGCCATGAGAAGTGTTGTA +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLCGVAK*AMRSVV
Trigger: TACAACACTTCTCATGGCTCATTTGGCCACTCCACA...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTACGTTATGCACTTTATaGAAAGGTGATCATGACCAT +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIATLCTL*KGDHDH
Trigger: ATGGTCATGATCACCTTTGCATAAAGTGCATAACGT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR GCA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGCTCACTGTCTGCATATaGACACGTGCGTGTATATAT +
Preference number: 2 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWLTVCI*TRACIY
Trigger: ATATATACACGCACGTGTGCATATGCAGACAGTGAG...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGAAGCTATACCTTTCCTaGCAGCTGTATCAGGAATCT +
Preference number: 2 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEKLYLS*QLYQES
Trigger: AGATTCCTGATACAGCTGGCAGGAAAGGTATAGCTT...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAGGCTGGAAGGAATTCTaGTTTCTCACACTAAACTTA +
Preference number: 2 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKGWKEF*FLTLNL
Trigger: TAAGTTTAGTGTGAGAAAGCAGAATTCCTTCCAGCC...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 90 bp GGAATTAAAAACAACACTGAAGTAAACAGGATCAGAAAAAGGAAGTaGGTTCCATGTCCAAGTCTGGCAGCATCTCAACTGAGATACAGA +
Preference number: 2 (lower is better)
Translates to: GIKNNTEVNRIRKRK*VPCPSLAASQLRYR
Trigger: TCTGTATCTCAGTTGAGATGCTGCCAGACTTGGACATGGAACCAACTTCCTTTTTCTGATCCTGTTTACTTCAGTGTTGTTTTTAATTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGCTAATTGCTCCAAACTaGCACATTGTAGGATTTGGT +
Preference number: 2 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWLIAPN*HIVGFG
Trigger: ACCAAATCCTACAATGTGTCAGTTTGGAGCAATTAG...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTCCACTGGGATTTTTCTaGGCATCGGACTTTGGTTTC +
Preference number: 2 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTPLGFF*ASDFGF
Trigger: GAAACCAAAGTCCGATGCTCAGAAAAATCCCAGTGG...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCAGGCCTAAATTCTCCTaGAGCTATACCTTTCCTGCC +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPRPKFS*SYTFPA
Trigger: GGCAGGAAAGGTATAGCTTCAGGAGAATTTAGGCCT...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTACTGGAGATCCAACATTaGCCCTTGACCTTTCAATGT +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLLEIQH*PLTFQC
Trigger: ACATTGAAAGGTCAAGGGTCAATGTTGGATCTCCAG...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTATTAACATGTTAGATTaGAGCTCAGCCATCAAAGAT +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAINMLD*SSAIKD
Trigger: ATCTTTGATGGCTGAGCTGCAATCTAACATGTTAAT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR GCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGCCACTCAGTGGCATTaGATTTGTTTAACAAAATTT +
Preference number: 2 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRATQWH*ICLTKF
Trigger: AAATTTTGTTAAACAAATGCAATGCCACTGAGTGGC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR GCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTGCCACTCAGTGGCATTaGATTTGTTTAACAAAATTT +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAATQWH*ICLTKF
Trigger: AAATTTTGTTAAACAAATGCAATGCCACTGAGTGGC...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR GCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCGTCACCATAGCTCTCTaGCCTCTCATGACTGAAACT +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPVTIAL*PLMTET
Trigger: AGTTTCAGTCATGAGAGGGCAGAGAGCTATGGTGAC...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAACATCTGGTGAGAAATTaGTCAAATAGTTCTCTACCT +
Preference number: 2 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKHLVRN*SNSSLP
Trigger: AGGTAGAGAACTATTTGAGCAATTTCTCACCAGATG...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTGACACAATAGCTACCTaGTGCTGGCTTCCAGTAACT +
Preference number: 2 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTDTIAT*CWLPVT
Trigger: AGTTACTGGAAGCCAGCAGCAGGTAGCTATTGTGTC...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCGTTCCCTCAGAAAGGTaGCTGAGATTTGGCAACTTG +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPVPSER*LRFGNL
Trigger: CAAGTTGCCAAATCTCAGGCACCTTTCTGAGGGAAC...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTATGCTGAGTAGACTCTaGGGAAAAATGAATTCTTAT +
Preference number: 2 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAMLSRL*GKMNSY
Trigger: ATAAGAATTCATTTTTCCCCAGAGTCTACTCAGCAT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR CCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCTCTGCACAGAAGCTCTaGGATTACAGAGATGTGCCA +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPSAQKL*DYRDVP
Trigger: TGGCACATCTCTGTAATCCCAGAGCTTCTGTGCAGA...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 90 bp GACAACCTTGAAGCTGAAGCTTTTATTTATCTGGGCAAAGGAATTTaGCACATTATTCTCCCTAAGGGCTCAAAATCCAATTACACCACA +
Preference number: 2 (lower is better)
Translates to: DNLEAEAFIYLGKGI*HIILPKGSKSNYTT
Trigger: TGTGGTGTAATTGGATTTTGAGCCCTTAGGGAGAATAATGTGCAAAATTCCTTTGCCCAGATAAATAAAAGCTTCAGCTTCAAGGTTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAAACTTCCCTTTACAATaGAACACCTTCTGCACCCTT +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLNFPLQ*NTFCTL
Trigger: AAGGGTGCAGAAGGTGTTTCATTGTAAAGGGAAGTT...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGTTGGTCCTTATTTACTaGGTACGTAATGCTCTCAAT +
Preference number: 2 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSELVLIY*VRNALN
Trigger: ATTGAGAGCATTACGTACTCAGTAAATAAGGACCAA...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGGGTGCTCCACATACATaGATGTTCTTACAAAAACAA +
Preference number: 2 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEGAPHT*MFLQKQ
Trigger: TTGTTTTTGTAAGAACATTCATGTATGTGGAGCACC...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTTGCAATACCACGTATTaGTGTTTGTGTTCTGGGGGT +
Preference number: 2 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTCNTTY*CLCSGG
Trigger: ACCCCCAGAACACAAACAGCAATACGTGGTATTGCA...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAGGGTTTGAGATAAAGTaGCTGCTCATTCTCCTTTGT +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLGFEIK*LLILLC
Trigger: ACAAAGGAGAATGAGCAGGCACTTTATCTCAAACCC...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTGCGCGCAATAGGCAATaGCTTGAATCATTCTCCTAT +
Preference number: 2 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTARNRQ*LESFSY
Trigger: ATAGGAGAATGATTCAAGCCATTGCCTATTGCGCGC...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCTTCAGAGCTATGGGCTaGAAGGAATTCTGCTTTCTC +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPFRAMG*KEFCFL
Trigger: GAGAAAGCAGAATTCCTTCCAGCCCATAGCTCTGAA...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCATTGCTTCAGAGCTATaGGCTGGAAGGAATTCTGCT +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPIASEL*AGRNSA
Trigger: AGCAGAATTCCTTCCAGCCCATAGCTCTGAAGCAAT...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAAAGGTGCCTGAGATTTaGCAACTTGAACAAGTTTCC +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLKVPEI*QLEQVS
Trigger: GGAAACTTGTTCAAGTTGCCAAATCTCAGGCACCTT...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTATTGGTTCAGTTTCATTaGGCCTCAATATTCCCTTCA +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLLVQFH*ASIFPS
Trigger: TGAAGGGAATATTGAGGCTCAATGAAACTGAACCAA...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTTGCGTGGATGTGAACTaGGAGTATAAAAGAGTGAGA +
Preference number: 2 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTCVDVN*EYKRVR
Trigger: TCTCACTCTTTTATACTCTCAGTTCACATCCACGCA...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCGTGAATACTGAAATCTaGGGCCATGTTGAGATTGCT +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPVNTEI*GHVEIA
Trigger: AGCAATCTCAACATGGCCTCAGATTTCAGTATTCAC...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCTTCGCTGAAGTGCAATaGAAGATAGAGAATTGCCCT +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPFAEVQ*KIENCP
Trigger: AGGGCAATTCTCTATCTTGCATTGCACTTCAGCGAA...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAAACAAGACAGTCTCTTaGTTCAGTTTCATTGAGCCT +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLNKTVS*FSFIEP
Trigger: AGGCTCAATGAAACTGAACCAAGAGACTGTCTTGTT...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp ACCATAGAGAACAACAGAGCAACAGAACCTCCTTTATGTAATTTGAAAGTGAAACAACTGCCTGAACTTTaGAAGGTGCTGAAATCCATA +
Preference number: 2 (lower is better)
Translates to: TIENNRATEPPLCNLKVKQLPEL*KVLKSI
Trigger: TATGGATTTCAGCACCTTCCAAAGTTCAGGCAGTTG...TTTCACTTTCAAATTACATAAAGGAGGTTCTGTTGCTCTGTTGTTCTCTATGGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGATGCTGAGTAGACTCTaGGGAAAAATGAATTCTTAT +
Preference number: 2 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWMLSRL*GKMNSY
Trigger: ATAAGAATTCATTTTTCCCCAGAGTCTACTCAGCAT...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAAAAGTGTCCACACTTTaGTCTTCCTTCTTCTACAGT +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLKVSTL*SSFFYS
Trigger: ACTGTAGAAGAAGGAAGACCAAAGTGTGGACACTTT...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTTTCACTATGAATACCTaGACTCTCCACAAGAGGAAC +
Preference number: 2 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTFTMNT*TLHKRN
Trigger: GTTCCTCTTGTGGAGAGTCCAGGTATTCATAGTGAA...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTATTATGTGTTCCTTTCTaGGTTAATACTCCTGAAGAC +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLLCVPF*VNTPED
Trigger: GTCTTCAGGAGTATTAACTCAGAAAGGAACACATAA...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR TCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAAAAGCCATCATCTGGTaGGAAATTGCTCAAATAGTT +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLKAIIW*EIAQIV
Trigger: AACTATTTGAGCAATTTCTCACCAGATGATGGCTTT...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAACGTTATGCACTTTATaGAAAGGTGATCATGACCAT +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLTLCTL*KGDHDH
Trigger: ATGGTCATGATCACCTTTGCATAAAGTGCATAACGT...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAAATTTATCCTGGCAATaGCAAGAGCCATTAATAAGC +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLNLSWQ*QEPLIS
Trigger: GCTTATTAATGGCTCTTGGCATTGCCAGGATAAATT...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTATGTGATAATTTATCCTaGCAATGCCAAGAGCCATTA +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLCDNLS*QCQEPL
Trigger: TAATGGCTCTTGGCATTGCCAGGATAAATTATCACA...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAACACTTAAGAAAGGCTaGTTGTTACAAGAGGAAAAG +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLTLKKG*LLQEEK
Trigger: CTTTTCCTCTTGTAACAACCAGCCTTTCTTAAGTGT...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 90 bp CCAGGGTTAGAGGGAGGATTATTATTCAAGAGAGGAGTATTATTATaGGGAGATATAAACAAGGGAGATATAAACAAGGGAGATATAAAC +
Preference number: 2 (lower is better)
Translates to: PGLEGGLLFKRGVLL*GDINKGDINKGDIN
Trigger: GTTTATATCTCCCTTGTTTATATCTCCCTTGTTTATATCTCCCAATAATAATACTCCTCTCTTGAATAATAATCCTCCCTCTAACCCTGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTTCCTGTCCATTTAAATaGAATACCACGTATTGCTGT +
Preference number: 2 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTSCPFK*NTTYCC
Trigger: ACAGCAATACGTGGTATTGCATTTAAATGGACAGGA...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCCCATTCTTCTATCTCTaGTTCAATTACCTGTCCTTA +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPPFFYL*FNYLSL
Trigger: TAAGGACAGGTAATTGAAGCAGAGATAGAAGAATGG...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAAATAACTGTGTGAACTaGAAGCCAAAGTTCATGTTT +
Preference number: 2 (lower is better)
Translates to: NNSFNILAKTTSLISALLNNCVN*KPKFMF
Trigger: AAACATGAACTTTGGCTTCCAGTTCACACAGTTATT...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCATTAACATGTTAGATTaGAGCTCAGCCATCAAAGAT +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPINMLD*SSAIKD
Trigger: ATCTTTGATGGCTGAGCTGCAATCTAACATGTTAAT...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR GCA 90 bp ACCATAGAGAACAACAGAGCAACAGAACCTCCTTTATGTAATTTGAAAGTGAAATTCTCAGTTACTAATTaGTCCAAACTGACACATTGT +
Preference number: 2 (lower is better)
Translates to: TIENNRATEPPLCNLKVKFSVTN*SKLTHC
Trigger: ACAATGTGTCAGTTTGGAGCAATTAGTAACTGAGAA...TTTCACTTTCAAATTACATAAAGGAGGTTCTGTTGCTCTGTTGTTCTCTATGGT
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCTGCTTTGTCCACAGCTaGTATATAATTTTGAAAAGC +
Preference number: 2 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPCFVHS*YIILKS
Trigger: GCTTTTCAAAATTATATACCAGCTGTGGACAAAGCA...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp GTGAGGTGGTGTGGCCTGCTGTGCGTGGATGTGAACTaGGAGTATAAAAGAGTGAGAGGTCCAGGGTTAGAG +
Preference number: 3 (lower is better)
Translates to: VRWCGLLCVDVN*EYKRVRGPGLE
Trigger: CTCTAACCCTGGACCTCTCACTCTTTTATACTCTCAGTTCACATCCACGCACAGCAGGCCACACCACCTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp ATGAGAGCTGACATGCCTTGGGTTTTAGACCCCTCATaGCCTCAGAGGGCTCTGGTAAGTGTGGATCCTCCA +
Preference number: 3 (lower is better)
Translates to: MRADMPWVLDPS*PQRALVSVDPP
Trigger: TGGAGGATCCACACTTACCAGAGCCCTCTGAGGTCATGAGGGGTCTAAAACCCAAGGCATGTCAGCTCTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp CCCCAGGAAACCAACCCTTGCAACTTCCCTTTACAATaGAACACCTTCTGCACCCTTGGCAGCACAGTAGTG +
Preference number: 3 (lower is better)
Translates to: PQETNPCNFPLQ*NTFCTLGSTVV
Trigger: CACTACTGTGCTGCCAAGGGTGCAGAAGGTGTTTCATTGTAAAGGGAAGTTGCAAGGGTTGGTTTCCTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR CCA 72 bp ACATGCAAAAGCTGGAGTGAGAAAGCCACAGGAGGCTaGCTAGCACTCACTGTGGCACTTATCTGTGAAACC +
Preference number: 3 (lower is better)
Translates to: TCKSWSEKATGG*LALTVALICET
Trigger: GGTTTCACAGATAAGTGCCACAGTGAGTGCTAGCCAGCCTCCTGTGGCTTTCTCACTCCAGCTTTTGCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp AGGAGAGGTATTGCGGGATCCTCCGGTAGTACTAGCTaGGACAAAAGGATGGACCATCTAGAGACTGCCATA +
Preference number: 3 (lower is better)
Translates to: RRGIAGSSGSTS*DKRMDHLETAI
Trigger: TATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTAGTACTACCGGAGGATCCCGCAATACCTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp GCGGGAGAGACAGATGCCGTGTCATGCGCATGTCTCTaGGAGTGTAAATTGAGGTCTGGATTCCAGAAGAAT +
Preference number: 3 (lower is better)
Translates to: AGETDAVSCACL*ECKLRSGFQKN
Trigger: ATTCTTCTGGAATCCAGACCTCAATTTACACTCTCAGAGACATGCGCATGACACGGCATCTGTCTCTCCCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp TGTCCTTCTTACCAGTTGGGACATCTTCTGGATATATaGCCAGGAGAGGTATTGCGGGATCCTCCGGTAGTA +
Preference number: 3 (lower is better)
Translates to: CPSYQLGHLLDI*PGEVLRDPPVV
Trigger: TACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 72 bp GTGTGCAGAAGGATCCTGTTACAGCTTCATTCTTCCTaGCCAGTTGAGCGCGCAATAGGCAATGGCTTGAAT +
Preference number: 3 (lower is better)
Translates to: VCRRILLQLHSS*PVERAIGNGLN
Trigger: ATTCAAGCCATTGCCTATTGCGCGCTCAACTGGCCAGGAAGAATGAAGCTGTAACAGGATCCTTCTGCACAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp AAGGATCCTGTTACAGCTTCATTCTTCCTGGCCAGTTaGGCGCGCAATAGGCAATGGCTTGAATCATTCTCC +
Preference number: 3 (lower is better)
Translates to: KDPVTASFFLAS*ARNRQWLESFS
Trigger: GGAGAATGATTCAAGCCATTGCCTATTGCGCGCTCAACTGGCCAGGAAGAATGAAGCTGTAACAGGATCCTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp TCAGAACTGCACACCTGTCAGCCTTTACTATTCTCCTaGAGGTGGTGTAAAAGGACACCCTGGAAATCTGCA +
Preference number: 3 (lower is better)
Translates to: SELHTCQPLLFS*RWCKRTPWKSA
Trigger: TGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATAGTAAAGGCTGACAGGTGTGCAGTTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 72 bp CAACTTCCCTTTACAATGAAACACCTTCTGCACCCTTaGCAGCACAGTAGTGTGGATGTCTGTCTCCAAGGT +
Preference number: 3 (lower is better)
Translates to: QLPFTMKHLLHP*QHSSVDVCLQG
Trigger: ACCTTGGAGACAGACATCCACACTACTGTGCTGCCAAGGGTGCAGAAGGTGTTTCATTGTAAAGGGAAGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR CCA 72 bp ACCTGCTGCTGGCTTCCAGTAACTGGGTTTCAATGGTaGATTTGGACCTGCCTATATTTCCTGTGCCTAGAT +
Preference number: 3 (lower is better)
Translates to: TCCWLPVTGFQW*IWTCLYFLCLD
Trigger: ATCTAGGCACAGGAAATATAGGCAGGTCCAAATCCACCATTGAAACCCAGTTACTGGAAGCCAGCAGCAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 72 bp ATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTaGAGTGAGAAAGCCACAGGAGGCTGGCTAGCACTC +
Preference number: 3 (lower is better)
Translates to: MRTFQDQSTCKS*SEKATGGWLAL
Trigger: GAGTGCTAGCCAGCCTCCTGTGGCTTTCTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp TTGCACCTGACTTCCTCATATAAGCCACAAACATCTTaGGAGCTGCGCAGGTGTACCAGGATACTGGTGAAT +
Preference number: 3 (lower is better)
Translates to: LHLTSSYKPQTS*ELRRCTRILVN
Trigger: ATTCACCAGTATCCTGGTACACCTGCGCAGCTCTCAAGATGTTTGTGGCTTATATGAGGAAGTCAGGTGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp ATAGAGAATTGCCCTCAAGACAGTCTGCTGTGGGAATaGAGGGAGCTTTGGAATTTTGGAATTGTGGGGGCA +
Preference number: 3 (lower is better)
Translates to: IENCPQDSLLWE*RELWNFGIVGA
Trigger: TGCCCCCACAATTCCAAAATTCCAAAGCTCCCTTCATTCCCACAGCAGACTGTCTTGAGGGCAATTCTCTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp AGTTGGTTCCATGTCCAAGTCTGGCAGCATCTCAACTaGGATACAGAGGCACATGATGGGTTACAAGCATAC +
Preference number: 3 (lower is better)
Translates to: SWFHVQVWQHLN*DTEAHDGLQAY
Trigger: GTATGCTTGTAACCCATCATGTGCCTCTGTATCTCAGTTGAGATGCTGCCAGACTTGGACATGGAACCAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp ACCAGACTGTGGAACCAGGCTGCCATAAGAGAATTGTaGGAAGAATGGCCAGGAATCCCAGAGTACAAACAA +
Preference number: 3 (lower is better)
Translates to: TRLWNQAAIREL*EEWPGIPEYKQ
Trigger: TTGTTTGTACTCTGGGATTCCTGGCCATTCTTCTCACAATTCTCTTATGGCAGCCTGGTTCCACAGTCTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp TGGCTAGCACTCACTGTGGCACTTATCTGTGAAACCTaGTCTAGAAACACCTACCTTGAACTCTCTTGTGAC +
Preference number: 3 (lower is better)
Translates to: WLALTVALICET*SRNTYLELSCD
Trigger: GTCACAAGAGAGTTCAAGGTAGGTGTTTCTAGAGCAGGTTTCACAGATAAGTGCCACAGTGAGTGCTAGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp CATATGAATGGGGAAGTCCTGTTACCTGTGCTTCCTTaGCAGGCCTTTTCTTTCCCATTGGTATACTCCTTC +
Preference number: 3 (lower is better)
Translates to: HMNGEVLLPVLP*QAFSFPLVYSF
Trigger: GAAGGAGTATACCAATGGGAAAGAAAAGGCCTGGCAAGGAAGCACAGGTAACAGGACTTCCCCATTCATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTACAGCAATAGATGCATaGAGCAGGCATGGAATGCTG +
Preference number: 3 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIATAIDA*SRHGML
Trigger: CAGCATTCCATGCCTGCTCAATGCATCTATTGCTGT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR CAA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAGGAGGAAGCTTGGCATaGAAGTCTCAGGAAACCTTC +
Preference number: 3 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKGGSLA*KSQETF
Trigger: GAAGGTTTCCTGAGACTTCAATGCCAAGCTTCCTCC...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp TTGCCTCCACACAACAGGCAAGGAACAGGGATAGTTTaGCCACCTGATGGGGTTGTGAAACTTTATGATTTC +
Preference number: 3 (lower is better)
Translates to: LPPHNRQGTGIV*PPDGVVKLYDF
Trigger: GAAATCATAAAGTTTCACAACCCCATCAGGTGGTCAAACTATCCCTGTTCCTTGCCTGTTGTGTGGAGGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp GGATGTAATGAGAATCACACTTGCTTGAAGTGCATATaGATGGGGAAGTCCTGTTACCTGTGCTTCCTTGCC +
Preference number: 3 (lower is better)
Translates to: GCNENHTCLKCI*MGKSCYLCFLA
Trigger: GGCAAGGAAGCACAGGTAACAGGACTTCCCCATTCATATGCACTTCAAGCAAGTGTGATTCTCATTACATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp TGTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATaGAATACCACGTATTGCTGTTTGTGTTCTGGGGGT +
Preference number: 3 (lower is better)
Translates to: CRIWYPVSCPFK*NTTYCCLCSGG
Trigger: ACCCCCAGAACACAAACAGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR GCA 72 bp CAAATAGCCCACATTAGGAACCAAGGTGGGTTTCATTaGTTCAGAGCTATGGGCTGGAAGGAATTCTGCTTT +
Preference number: 3 (lower is better)
Translates to: QIAHIRNQGGFH*FRAMGWKEFCF
Trigger: AAAGCAGAATTCCTTCCAGCCCATAGCTCTGAAGCAATGAAACCCACCTTGGTTCCTAATGTGGGCTATTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 72 bp TGCTGGCTTCCAGTAACTGGGTTTCAATGGTGGATTTaGACCTGCCTATATTTCCTGTGCCTAGATATCTTC +
Preference number: 3 (lower is better)
Translates to: CWLPVTGFQWWI*TCLYFLCLDIF
Trigger: GAAGATATCTAGGCACAGGAAATATAGGCAGGTCCAAATCCACCATTGAAACCCAGTTACTGGAAGCCAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 72 bp AGACACAATAGCTACCTGCTGCTGGCTTCCAGTAACTaGGTTTCAATGGTGGATTTGGACCTGCCTATATTT +
Preference number: 3 (lower is better)
Translates to: RHNSYLLLASSN*VSMVDLDLPIF
Trigger: AAATATAGGCAGGTCCAAATCCACCATTGAAACCCAGTTACTGGAAGCCAGCAGCAGGTAGCTATTGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTAGCTGGCAGTGCTGTTaGGGGGTGAGGAGGATGGAA +
Preference number: 3 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTSWQCC*GVRRME
Trigger: TTCCATCCTCCTCACCCCCAAACAGCACTGCCAGCT...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAGCTGCTGCCCTTTGTTaGTTTCCCTGTGGCATTAAT +
Preference number: 3 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKAAALC*FPCGIN
Trigger: ATTAATGCCACAGGGAAACAAACAAAGGGCAGCAGC...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp ACAATGACACCATTGCATACACTAGCAAGCATTGGCTaGAAGGACCCTGATATAGCTGTCTCTTGTGAGACT +
Preference number: 3 (lower is better)
Translates to: TMTPLHTLASIG*KDPDIAVSCET
Trigger: AGTCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCCAATGCTTGCTAGTGTATGCAATGGTGTCATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp TTACATTCACAGCAGCTTACACTAATCTCTCAGAACTaGACACCTGTCAGCCTTTACTATTCTCCTGCAGGT +
Preference number: 3 (lower is better)
Translates to: LHSQQLTLISQN*TPVSLYYSPAG
Trigger: ACCTGCAGGAGAATAGTAAAGGCTGACAGGTGTGCAGTTCTGAGAGATTAGTGTAAGCTGCTGTGAATGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp AGGCCATTAATAAAACACCAGACTGTGGAACCAGGCTaGCATAAGAGAATTGTGAGAAGAATGGCCAGGAAT +
Preference number: 3 (lower is better)
Translates to: RPLIKHQTVEPG*HKRIVRRMARN
Trigger: ATTCCTGGCCATTCTTCTCACAATTCTCTTATGGCAGCCTGGTTCCACAGTCTGGTGTTTTATTAATGGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGACTTGGTTCAGTTTCATaGAGCCTCAATATTCCCTTC +
Preference number: 3 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRLGSVS*SLNIPF
Trigger: GAAGGGAATATTGAGGCTCAATGAAACTGAACCAAG...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR CAA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACACTTGGTTCAGTTTCATaGAGCCTCAATATTCCCTTC +
Preference number: 3 (lower is better)
Translates to: PSPPREQYATQWHCICLTLGSVS*SLNIPF
Trigger: GAAGGGAATATTGAGGCTCAATGAAACTGAACCAAG...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR CAA 90 bp ACCATAGAGAACAACAGAGCAACAGAACCTCCTTTATGTAATTTGAAAGTGAAAACCACGTATTGCTGTTaGTGTTCTGGGGGTGAGGGG +
Preference number: 3 (lower is better)
Translates to: TIENNRATEPPLCNLKVKTTYCC*CSGGEG
Trigger: CCCCTCACCCCCAGAACACAAACAGCAATACGTGGT...TTTCACTTTCAAATTACATAAAGGAGGTTCTGTTGCTCTGTTGTTCTCTATGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGATGCAATACCACGTATaGCTGTTTGTGTTCTGGGGG +
Preference number: 3 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEMQYHV*LFVFWG
Trigger: CCCCCAGAACACAAACAGCAATACGTGGTATTGCAT...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAACCCCCTTTAGCTCATaGGGTATTTTCTCTAGCTTC +
Preference number: 3 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKTPFSS*GIFSSF
Trigger: GAAGCTAGAGAAAATACCCAATGAGCTAAAGGGGGT...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp GACAGATGTTGGGATGTAATGAGAATCACACTTGCTTaGAGTGCATATGAATGGGGAAGTCCTGTTACCTGT +
Preference number: 3 (lower is better)
Translates to: DRCWDVMRITLA*SAYEWGSPVTC
Trigger: ACAGGTAACAGGACTTCCCCATTCATATGCACTTCAAGCAAGTGTGATTCTCATTACATCCCAACATCTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp ACCATACCTCAAAGCCACATGTTGGAAAGAGACATCTaGCAATTGTCCTCGGACCTCCATGTGAATTCATTA +
Preference number: 3 (lower is better)
Translates to: TIPQSHMLERDI*QLSSDLHVNSL
Trigger: TAATGAATTCACATGGAGGTCCGAGGACAATTGTCAGATGTCTCTTTCCAACATGTGGCTTTGAGGTATGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp AGTCTGGCAGCATCTCAACTGAGATACAGAGGCACATaGTGGGTTACAAGCATACAGCAAATCATCTTTTCT +
Preference number: 3 (lower is better)
Translates to: SLAASQLRYRGT*WVTSIQQIIFS
Trigger: AGAAAAGATGATTTGCTGTATGCTTGTAACCCATCATGTGCCTCTGTATCTCAGTTGAGATGCTGCCAGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 72 bp TTTGAGATAAAGTGCCTGCTCATTCTCCTTTGTGTATaGCATACTAACCAGTCCAGGAACTTCTGGGTTTTG +
Preference number: 3 (lower is better)
Translates to: FEIKCLLILLCV*HTNQSRNFWVL
Trigger: CAAAACCCAGAAGTTCCTGGACTGGTTAGTATGCCATACACAAAGGAGAATGAGCAGGCACTTTATCTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTCTGGCCTCTCTCTGCTaGTTCTCTCTCTGTTTTCCC +
Preference number: 3 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTLASLC*FSLCFP
Trigger: GGGAAAACAGAGAGAGAACAAGCAGAGAGAGGCCAG...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp AATAACTGTGTGAACTGGAAGCCAAAGTTCATGTTTTaGACTGCATCCCCATCCTTTCACACCATAGAGAAC +
Preference number: 3 (lower is better)
Translates to: NNCVNWKPKFMF*TASPSFHTIEN
Trigger: GTTCTCTATGGTGTGAAAGGATGGGGATGCAGTTCAAAACATGAACTTTGGCTTCCAGTTCACACAGTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp TATTGTTTCTTGAGTCCCACTGGGTTTGAGATAAAGTaGCTGCTCATTCTCCTTTGTGTATGGCATACTAAC +
Preference number: 3 (lower is better)
Translates to: YCFLSPTGFEIK*LLILLCVWHTN
Trigger: GTTAGTATGCCATACACAAAGGAGAATGAGCAGGCACTTTATCTCAAACCCAGTGGGACTCAAGAAACAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 72 bp GTTACTAATTGCTCCAAACTGACACATTGTAGGATTTaGTACCCCGTGTCCTGTCCATTTAAATGCAATACC +
Preference number: 3 (lower is better)
Translates to: VTNCSKLTHCRI*YPVSCPFKCNT
Trigger: GGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTACAATGTGTCAGTTTGGAGCAATTAGTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR CCA 72 bp TCAGACTTTGCAACATCTTCTGGAAGATCTGTTATATaGACTGAAAACACACCCAACTTCAGTCACCATAGC +
Preference number: 3 (lower is better)
Translates to: SDFATSSGRSVI*TENTPNFSHHS
Trigger: GCTATGGTGACTGAAGTTGGGTGTGTTTTCAGTCCATATAACAGATCTTCCAGAAGATGTTGCAAAGTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR-3UTR CAA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCGAGGTGGGACCTTGCTaGAAGAAGTACAGCAGTAGT +
Preference number: 3 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPEVGPC*KKYSSS
Trigger: ACTACTGCTGTACTTCTTCAAGCAAGGTCCCACCTC...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCTTAGGAGGTGGGACCTaGCTTGAAGAAGTACAGCAG +
Preference number: 3 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPLGGGT*LEEVQQ
Trigger: CTGCTGTACTTCTTCAAGCAAGGTCCCACCTCCTAA...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp AACTTCAGTCACCATAGCTCTCTGCCCTCTCATGACTaGAACTTCACACAGTTAAGTTTAATTTCCATTCTC +
Preference number: 3 (lower is better)
Translates to: NFSHHSSLPSHD*NFTQLSLISIL
Trigger: GAGAATGGAAATTAAACTTAACTGTGTGAAGTTTCAGTCATGAGAGGGCAGAGAGCTATGGTGACTGAAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR GCA 72 bp ATCTTCAAAAGAAGGCTTAGGTATAAAAACATCCCATaGTTACTATTCAGTAGCTTGAGGTGTGCCTCCAGA +
Preference number: 3 (lower is better)
Translates to: IFKRRLRYKNIP*LLFSSLRCASR
Trigger: TCTGGAGGCACACCTCAAGCTACTGAATAGTAAGCATGGGATGTTTTTATACCTAAGCCTTCTTTTGAAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp GACGTTGATTTGCATGACCCTTATTTACATGGCAGATaGTGCACAACTGGAAATAAATTACATTCACAGCAG +
Preference number: 3 (lower is better)
Translates to: DVDLHDPYLHGR*CTTGNKLHSQQ
Trigger: CTGCTGTGAATGTAATTTATTTCCAGTTGTGCAGCATCTGCCATGTAAATAAGGGTCATGCAAATCAACGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 72 bp TTACTATTCTCCTGCAGGTGGTGTAAAAGGACACCCTaGAAATCTGCACAAAGAAAAATTTACTGGAAATGC +
Preference number: 3 (lower is better)
Translates to: LLFSCRWCKRTP*KSAQRKIYWKC
Trigger: GCATTTCCAGTAAATTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATAGTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCCAAAGTGTCCACACTTaGGTCTTCCTTCTTCTACAG +
Preference number: 3 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPQSVHT*VFLLLQ
Trigger: CTGTAGAAGAAGGAAGACCAAAGTGTGGACACTTTG...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCGAGGAACAAGTGTTCTaGACACGTGAAGCATTTCTC +
Preference number: 3 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPEEQVF*TREAFL
Trigger: GAGAAATGCTTCACGTGTCAAGAACACTTGTTCCTC...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCCCGTTGACTATTGCTTaGCTGTATCCTGTCTACTTC +
Preference number: 3 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPPLTIA*LYPVYF
Trigger: GAAGTAGACAGGATACAGCAAAGCAATAGTCAACGG...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp TTTCAATGGTGGATTTGGACCTGCCTATATTTCCTGTaGCTAGATATCTTCTTTTCTCTTAGAGAATTCCCA +
Preference number: 3 (lower is better)
Translates to: FQWWIWTCLYFL*LDIFFSLREFP
Trigger: TGGGAATTCTCTAAGAGAAAAGAAGATATCTAGGCACAGGAAATATAGGCAGGTCCAAATCCACCATTGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp GTTGATTTGCATGACCCTTATTTACATGGCAGATGCTaGACAACTGGAAATAAATTACATTCACAGCAGCTT +
Preference number: 3 (lower is better)
Translates to: VDLHDPYLHGRC*TTGNKLHSQQL
Trigger: AAGCTGCTGTGAATGTAATTTATTTCCAGTTGTGCAGCATCTGCCATGTAAATAAGGGTCATGCAAATCAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CCA 72 bp CAAACATTGATCTCTGAGAGGTTTGAATTGATTTGTTaGTGGAGAGGTCAGCCATTGGTTACAGTATTATTG +
Preference number: 3 (lower is better)
Translates to: QTLISERFELIC*WRGQPLVTVLL
Trigger: CAATAATACTGTAACCAATGGCTGACCTCTCCACCAACAAATCAATTCAAACCTCTCAGAGATCAATGTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR-3UTR CAA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTACAAACAATGACACCATaGCATACACTAGCAAGCATT +
Preference number: 3 (lower is better)
Translates to: NNSFNILAKTTSLISALLQTMTP*HTLASI
Trigger: AATGCTTGCTAGTGTATGCAATGGTGTCATTGTTTG...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp ACACACTCCTGCTTTGCTGTAGGTGCTCCACATACATaGATGTTCTTACAAAAACAACAAGAGAGTATAAAT +
Preference number: 3 (lower is better)
Translates to: THSCFAVGAPHT*MFLQKQQESIN
Trigger: ATTTATACTCTCTTGTTGTTTTTGTAAGAACATTCATGTATGTGGAGCACCTACAGCAAAGCAGGAGTGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp AATCAACCAACCATATTTTACCTTATAAATGTGGAGTaGAGGCCATTAATAAAACACCAGACTGTGGAACCA +
Preference number: 3 (lower is better)
Translates to: NQPTIFYLINVE*RPLIKHQTVEP
Trigger: TGGTTCCACAGTCTGGTGTTTTATTAATGGCCTGCACTCCACATTTATAAGGTAAAATATGGTTGGTTGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR TCA 72 bp GAGCCATTAATAAGCTATTTCTTGGTCCTTATTTACTaGGTACGTAATGCTCTCAATGAGAGTAGGAAAAAC +
Preference number: 3 (lower is better)
Translates to: EPLISYFLVLIY*VRNALNESRKN
Trigger: GTTTTTCCTACTCTCATTGAGAGCATTACGTACTCAGTAAATAAGGACCAAGAAATAGCTTATTAATGGCTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp TCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTaGATTTGTTTAACAAAATTTCTTTATCAGAAACTA +
Preference number: 3 (lower is better)
Translates to: SPPREQYATQWH*ICLTKFLYQKL
Trigger: TAGTTTCTGATAAAGAAATTTTGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR TCA 72 bp GTTGATTTAAAAGTATTCTATCTACTGACAACTGCCTaGACTTTGGAAGGTGCTGAAATCCATATTTCTACA +
Preference number: 3 (lower is better)
Translates to: VDLKVFYLLTTA*TLEGAEIHIST
Trigger: TGTAGAAATATGGATTTCAGCACCTTCCAAAGTTCAGGCAGTTGTCAGTAGATAGAATACTTTTAAATCAAC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR TCA 72 bp CTTTCAAAGGAATTTCAAAGGTTATGTGTTCCTTTCTaGGTTAATACTCCTGAAGACTCTCACCATAGAAAA +
Preference number: 3 (lower is better)
Translates to: LSKEFQRLCVPF*VNTPEDSHHRK
Trigger: TTTTCTATGGTGAGAGTCTTCAGGAGTATTAACTCAGAAAGGAACACATAACCTTTGAAATTCCTTTGAAAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR GCA 72 bp CAAGAGAGTATAAATCAACTCAAACTGGAATTTAAATaGTGTTGTAGGATTCACTATGAATACCTGGACTCT +
Preference number: 3 (lower is better)
Translates to: QESINQLKLEFK*CCRIHYEYLDS
Trigger: AGAGTCCAGGTATTCATAGTGAATCCTACAACAGCATTTAAATTCCAGTTTGAGTTGATTTATACTCTCTTG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR GCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATCCTGGTCGGCTGGCTaGGACTGGGTTGCCCTGGCC +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRSWSAG*DWVALA
Trigger: GGCCAGGGCAACCCAGTCGCAGCCAGCCGACCAGGA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp GCAGATTTGGGGATTTATAACCTGGCCTCTCTCTGCTaGTTCTCTCTCTGTTTTCCCAGCAGCCAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: ADLGIYNLASLC*FSLCFPSSQPG
Trigger: GCCTGGCTGGCTGCTGGGAAAACAGAGAGAGAACAAGCAGAGAGAGGCCAGGTTATAAATCCCCAAATCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGGCGACTGGGTTGCCCTaGCCCCTGGGGTGGGTTGCT +
Preference number: 4 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEATGLP*PLGWVA
Trigger: AGCAACCCACCCCAGGGGCCAGGGCAACCCAGTCGC...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp TGGAAAGCAGGCAGAGGCAAGCGGTTCCCTGTGAGTTaGAGGTCAGCTTGCTCTATGTTAGTATTGACCCTG +
Preference number: 4 (lower is better)
Translates to: WKAGRGKRFPVS*RSACSMLVLTL
Trigger: CAGGGTCAATACTAACATAGAGCAAGCTGACCTCAAACTCACAGGGAACCGCTTGCCTCTGCCTGCTTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp CCCTCAAGACAGTCTGCTGTGGGAATGAAGGGAGCTTaGGAATTTTGGAATTGTGGGGGCAGGTTTAGGCTC +
Preference number: 4 (lower is better)
Translates to: PSRQSAVGMKGA*EFWNCGGRFRL
Trigger: GAGCCTAAACCTGCCCCCACAATTCCAAAATTCCAAAGCTCCCTTCATTCCCACAGCAGACTGTCTTGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGCCGATTCAACCACCTaGCCACTGTCCTCGTGTTGC +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRADSTT*PLSSCC
Trigger: GCAACACGAGGACAGTGGTCAGGTGGTTGAATCGGC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAGCCGATTCAACCACCTaGCCACTGTCCTCGTGTTGC +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTADSTT*PLSSCC
Trigger: GCAACACGAGGACAGTGGTCAGGTGGTTGAATCGGC...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGGGTTGTCTGTGATGTaGAGGCTGACCACTGGGACC +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRGLSVM*RLTTGT
Trigger: GGTCCCAGTGGTCAGCCTTCACATCACAGACAACCC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAGGGTTGTCTGTGATGTaGAGGCTGACCACTGGGACC +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTGLSVM*RLTTGT
Trigger: GGTCCCAGTGGTCAGCCTTCACATCACAGACAACCC...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTTGGAGGGCTGACACTTaGTGTGATGGGACACGCTGG +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAWRADT*CDGTRW
Trigger: CCAGCGTGTCCCATCACATCAAGTGTCAGCCCTCCA...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAATCAGCTGCTGTCCTTaGACACCCCAGGCCGCATAC +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRISCCP*TPQAAY
Trigger: GTATGCGGCCTGGGGTGTGCAAGGACAGCAGCTGAT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAATCAGCTGCTGTCCTTaGACACCCCAGGCCGCATAC +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTISCCP*TPQAAY
Trigger: GTATGCGGCCTGGGGTGTGCAAGGACAGCAGCTGAT...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR CAA 72 bp CCCAAGGCGCCAGGGACTGCAGCTAAGTCATATGACTaGCACCTGACTTCCTCATATAAGCCACAAACATCT +
Preference number: 4 (lower is better)
Translates to: PKAPGTAAKSYD*HLTSSYKPQTS
Trigger: AGATGTTTGTGGCTTATATGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCCTTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGACGCATACTGCAACACTaGGTCCTCAACTTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRRILQH*VLNFWG
Trigger: CCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCG...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTCGCATACTGCAACACTaGGTCCTCAACTTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIARILQH*VLNFWG
Trigger: CCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCG...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGACACTTCCCAGTTTCCTaGTGTCAGATGCCGCACCGT +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRHFPVS*CQMPHR
Trigger: ACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTG...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGACCCCAGGCCGCATACTaGAACACTGAGTCCTCAACT +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRPQAAY*NTESST
Trigger: AGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGG...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACACCCCAGGCCGCATACTaGAACACTGAGTCCTCAACT +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTPQAAY*NTESST
Trigger: AGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGG...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAACGCATACTGCAACACTaGGTCCTCAACTTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKRILQH*VLNFWG
Trigger: CCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCG...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR GCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGATCAGCTGCTGTCCTTaGACACCCCAGGCCGCATAC +
Preference number: 4 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEISCCP*TPQAAY
Trigger: GTATGCGGCCTGGGGTGTGCAAGGACAGCAGCTGAT...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATCACCAGCAGGGCAATaGCGATTCCCTTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRSPAGQ*RFPSSF
Trigger: GAAACTGGAAGGGAATCGCCATTGCCCTGCTGGTGA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGTGAAGGCTGACCACTaGGACCTTTGGACCTTCACA +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRVKADH*DLWTFT
Trigger: TGTGAAGGTCCAAAGGTCCCAGTGGTCAGCCTTCAC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTGTGAAGGCTGACCACTaGGACCTTTGGACCTTCACA +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAVKADH*DLWTFT
Trigger: TGTGAAGGTCCAAAGGTCCCAGTGGTCAGCCTTCAC...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAACTTCATGTCTGAGATaGGTGCAACCACGGCTCCAC +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRTSCLR*VQPRLH
Trigger: GTGGAGCCGTGGTTGCACCCATCTCAGACATGAAGT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGCACTTCCCAGTTTCCTaGTGTCAGATGCCGCACCGT +
Preference number: 4 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWHFPVS*CQMPHR
Trigger: ACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTG...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTATACAACTTCATGTCTaGGATGGGTGCAACCACGGC +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAIQLHV*DGCNHG
Trigger: GCCGTGGTTGCACCCATCTCAGACATGAAGTTGTAT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAATACAACTTCATGTCTaGGATGGGTGCAACCACGGC +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRIQLHV*DGCNHG
Trigger: GCCGTGGTTGCACCCATCTCAGACATGAAGTTGTAT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATACTTCCTAGTTCCTTaGTGGTCTTGGAGGGCTGAC +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRYFLVP*WSWRAD
Trigger: GTCAGCCCTCCAAGACCATCAAGGAACTAGGAAGTA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTACCTGGGGTGGGTTGCTaGTCCTGCTTCATGGCTGTC +
Preference number: 4 (lower is better)
Translates to: NNSFNILAKTTSLISALLPGVGC*SCFMAV
Trigger: GACAGCCATGAAGCAGGAGCAGCAACCCACCCCAGG...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR GCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGCCCCAGGCCGCATACTaGAACACTGAGTCCTCAACT +
Preference number: 4 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEPQAAY*NTESST
Trigger: AGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGG...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR GCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAGTATGGGTACTGCTTTaGTTTGGGGTACAGTGCTCC +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTVWVLL*FGVQCS
Trigger: GGAGCACTGTACCCCAAAGCAAAGCAGTACCCATAC...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGTATGGGTACTGCTTTaGTTTGGGGTACAGTGCTCC +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRVWVLL*FGVQCS
Trigger: GGAGCACTGTACCCCAAAGCAAAGCAGTACCCATAC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTTGCCGCACCGTAATTTaGTCGCTTTTACTCTGGACC +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIACRTVI*SLLLWT
Trigger: GGTCCAGAGTAAAAGCGAGCAAATTACGGTGCGGCA...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACATGCCGCACCGTAATTTaGTCGCTTTTACTCTGGACC +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTCRTVI*SLLLWT
Trigger: GGTCCAGAGTAAAAGCGAGCAAATTACGGTGCGGCA...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR CAA 72 bp TCTTCCTGGCCAGTTGAGCGCGCAATAGGCAATGGCTaGAATCATTCTCCTATGGTATCCAACCAGTTCTTA +
Preference number: 4 (lower is better)
Translates to: SSWPVERAIGNG*NHSPMVSNQFL
Trigger: TAAGAACTGGTTGGATACCATAGGAGAATGATTCAAGCCATTGCCTATTGCGCGCTCAACTGGCCAGGAAGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp GCATATGAATGGGGAAGTCCTGTTACCTGTGCTTCCTaGCCAGGCCTTTTCTTTCCCATTGGTATACTCCTT +
Preference number: 4 (lower is better)
Translates to: AYEWGSPVTCAS*PGLFFPIGILL
Trigger: AAGGAGTATACCAATGGGAAAGAAAAGGCCTGGCAAGGAAGCACAGGTAACAGGACTTCCCCATTCATATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACACCGTTCAGAGAAAGCTaGGGCATACAACTTCATGTC +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTPFRES*GIQLHV
Trigger: GACATGAAGTTGTATGCCTCAGCTTTCTCTGAACGG...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATGCTTTGGGGTACAGTaGTCCAGTAAACCGAGGTAT +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRCFGVQ*SSKPRY
Trigger: ATACCTCGGTTTACTGGAGCACTGTACCCCAAAGCA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACATGCTTTGGGGTACAGTaGTCCAGTAAACCGAGGTAT +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTCFGVQ*SSKPRY
Trigger: ATACCTCGGTTTACTGGAGCACTGTACCCCAAAGCA...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACATTTCCTGATGTCAGATaGCGCACCGTAATTTGCTCG +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTFPDVR*RTVICS
Trigger: CGAGCAAATTACGGTGCGGCATCTGACATCAGGAAA...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGTCACCAGCAGGGCAATaGCGATTCCCTTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWSPAGQ*RFPSSF
Trigger: GAAACTGGAAGGGAATCGCCATTGCCCTGCTGGTGA...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAACTTGCTTCCATCTCTaGAAAACACTGGCTCCTCGT +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRTCFHL*KTLAPR
Trigger: ACGAGGAGCCAGTGTTTTCCAGAGATGGAAGCAAGT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTACTTGCTTCCATCTCTaGAAAACACTGGCTCCTCGT +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIATCFHL*KTLAPR
Trigger: ACGAGGAGCCAGTGTTTTCCAGAGATGGAAGCAAGT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATATAGTTGCCTCCCTTaGGGAGAAGATTCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRYSCLP*GEDSVL
Trigger: GAGCACAGAATCTTCTCCCCAAGGGAGGCAACTATA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACATATAGTTGCCTCCCTTaGGGAGAAGATTCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTYSCLP*GEDSVL
Trigger: GAGCACAGAATCTTCTCCCCAAGGGAGGCAACTATA...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAAAAACTTTCAGGCCCTaGAATCCACTTCCTCTGCCA +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRKTFRP*NPLPLP
Trigger: TGGCAGAGGAAGTGGATTCCAGGGCCTGAAAGTTTT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAAAAACTTTCAGGCCCTaGAATCCACTTCCTCTGCCA +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTKTFRP*NPLPLP
Trigger: TGGCAGAGGAAGTGGATTCCAGGGCCTGAAAGTTTT...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTTTTACAGCAGCTACTTaGTCCTTTGCCTCCACTGAG +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAFTAAT*SFASTE
Trigger: CTCAGTGGAGGCAAAGGACCAAGTAGCTGCTGTAAA...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGACTTCATGTCTGAGATaGGTGCAACCACGGCTCCAC +
Preference number: 4 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSETSCLR*VQPRLH
Trigger: GTGGAGCCGTGGTTGCACCCATCTCAGACATGAAGT...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp CTGCTGGCTTCCAGTAACTGGGTTTCAATGGTGGATTaGGACCTGCCTATATTTCCTGTGCCTAGATATCTT +
Preference number: 4 (lower is better)
Translates to: LLASSNWVSMVD*DLPIFPVPRYL
Trigger: AAGATATCTAGGCACAGGAAATATAGGCAGGTCCAAATCCACCATTGAAACCCAGTTACTGGAAGCCAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp CTGGTTCCCTCAGAAAGGTGCCTGAGATTTGGCAACTaGAACAAGTTTCCAGAAGCAGCTAAGCACTTAACT +
Preference number: 4 (lower is better)
Translates to: LVPSERCLRFGN*NKFPEAAKHLT
Trigger: AGTTAAGTGCTTAGCTGCTTCTGGAAACTTGTTCAAGTTGCCAAATCTCAGGCACCTTTCTGAGGGAACCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp ACCATAGAGAACAACAGAGCAACAGAACCTCCTTTATGTAATTTGAAAGTGAAAGGGTTGTCTGTGATGTaGAGGCTGACCACTGGGACC +
Preference number: 4 (lower is better)
Translates to: TIENNRATEPPLCNLKVKGLSVM*RLTTGT
Trigger: GGTCCCAGTGGTCAGCCTTCACATCACAGACAACCC...TTTCACTTTCAAATTACATAAAGGAGGTTCTGTTGCTCTGTTGTTCTCTATGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACACAAGAGGAAATACCTTaGTGGGTTGTCTGTGATGTG +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTQEEIP*WVVCDV
Trigger: CACATCACAGACAACCCATCAAGGTATTTCCTCTTG...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTCAAGAGGAAATACCTTaGTGGGTTGTCTGTGATGTG +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAQEEIP*WVVCDV
Trigger: CACATCACAGACAACCCATCAAGGTATTTCCTCTTG...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGACAAGAGGAAATACCTTaGTGGGTTGTCTGTGATGTG +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRQEEIP*WVVCDV
Trigger: CACATCACAGACAACCCATCAAGGTATTTCCTCTTG...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGATACAACTTCATGTCTaGGATGGGTGCAACCACGGC +
Preference number: 4 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWIQLHV*DGCNHG
Trigger: GCCGTGGTTGCACCCATCTCAGACATGAAGTTGTAT...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAACTTGCTTCCATCTCTaGAAAACACTGGCTCCTCGT +
Preference number: 4 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKTCFHL*KTLAPR
Trigger: ACGAGGAGCCAGTGTTTTCCAGAGATGGAAGCAAGT...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp GAATACCTGGACTCTCCACAAGAGGAACAAGTGTTCTaGACACGTGAAGCATTTCTCTATCTTGTAACTCCC +
Preference number: 4 (lower is better)
Translates to: EYLDSPQEEQVF*TREAFLYLVTP
Trigger: GGGAGTTACAAGATAGAGAAATGCTTCACGTGTCAAGAACACTTGTTCCTCTTGTGGAGAGTCCAGGTATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp AGCTCAGCTCTTTACCTGGGTGCTGGAGATCCAACATaGACCCTTGACCTTTCAATGTTGGTACTTTTGATT +
Preference number: 4 (lower is better)
Translates to: SSALYLGAGDPT*TLDLSMLVLLI
Trigger: AATCAAAAGTACCAACATTGAAAGGTCAAGGGTCAATGTTGGATCTCCAGCACCCAGGTAAAGAGCTGAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp CTTGATTTGCATGGCCCTGATTTGCAAGACGTTGATTaGCATGACCCTTATTTACATGGCAGATGCTGCACA +
Preference number: 4 (lower is better)
Translates to: LDLHGPDLQDVD*HDPYLHGRCCT
Trigger: TGTGCAGCATCTGCCATGTAAATAAGGGTCATGCAAATCAACGTCTTGCAAATCAGGGCCATGCAAATCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp GGGGAACCTCAAACATTGATCTCTGAGAGGTTTGAATaGATTTGTTGGTGGAGAGGTCAGCCATTGGTTACA +
Preference number: 4 (lower is better)
Translates to: GEPQTLISERFE*ICWWRGQPLVT
Trigger: TGTAACCAATGGCTGACCTCTCCACCAACAAATCAATTCAAACCTCTCAGAGATCAATGTTTGAGGTTCCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAATCAGCTCCAAAGTATaGGTTGGTCCATACAGGTTT +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRISSKV*VGPYRF
Trigger: AAACCTGTATGGACCAACTCATACTTTGGAGCTGAT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTATCAGCTCCAAAGTATaGGTTGGTCCATACAGGTTT +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAISSKV*VGPYRF
Trigger: AAACCTGTATGGACCAACTCATACTTTGGAGCTGAT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGGTGTCAATAAGAACTaGATCCCAGTCAACATGGAA +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRGVNKN*IPVNME
Trigger: TTCCATGTTGACTGGGATTCAGTTCTTATTGACACC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTGGTGTCAATAAGAACTaGATCCCAGTCAACATGGAA +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAGVNKN*IPVNME
Trigger: TTCCATGTTGACTGGGATTCAGTTCTTATTGACACC...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGACCACGGCTCCACATTTaGAAAACTTCTCATCTGATT +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRPRLHI*KTSHLI
Trigger: AATCAGATGAGAAGTTTTTCAAATGTGGAGCCGTGG...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACACCACGGCTCCACATTTaGAAAACTTCTCATCTGATT +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTPRLHI*KTSHLI
Trigger: AATCAGATGAGAAGTTTTTCAAATGTGGAGCCGTGG...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAAGGAACATAGCTATGTaGTGGAATTCTCCTCTTCCA +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTRNIAM*WNSPLP
Trigger: TGGAAGAGGAGAATTCCACCACATAGCTATGTTCCT...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAAGGAACATAGCTATGTaGTGGAATTCTCCTCTTCCA +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRRNIAM*WNSPLP
Trigger: TGGAAGAGGAGAATTCCACCACATAGCTATGTTCCT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGTATAGTTGCCTCCCTTaGGGAGAAGATTCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEYSCLP*GEDSVL
Trigger: GAGCACAGAATCTTCTCCCCAAGGGAGGCAACTATA...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATTATTCATCTTCTTCTaGTTCCTGTGGCAGCACAGA +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRLFIFF*FLWQHR
Trigger: TCTGTGCTGCCACAGGAACCAGAAGAAGATGAATAA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTTTATTCATCTTCTTCTaGTTCCTGTGGCAGCACAGA +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIALFIFF*FLWQHR
Trigger: TCTGTGCTGCCACAGGAACCAGAAGAAGATGAATAA...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
3UTR CAA 72 bp ACACCACAAAGATCACAGCATCCTAAAGGACAGATGTaGGGATGTAATGAGAATCACACTTGCTTGAAGTGC +
Preference number: 4 (lower is better)
Translates to: TPQRSQHPKGQM*GCNENHTCLKC
Trigger: GCACTTCAAGCAAGTGTGATTCTCATTACATCCCAACATCTGTCCTTTAGGATGCTGTGATCTTTGTGGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp AACAACACTGAAGTAAACAGGATCAGAAAAAGGAAGTaGGTTCCATGTCCAAGTCTGGCAGCATCTCAACTG +
Preference number: 4 (lower is better)
Translates to: NNTEVNRIRKRK*VPCPSLAASQL
Trigger: CAGTTGAGATGCTGCCAGACTTGGACATGGAACCAACTTCCTTTTTCTGATCCTGTTTACTTCAGTGTTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp TGTTGGTGGAGAGGTCAGCCATTGGTTACAGTATTATaGCTCGATGGTGTTAGACAGATAAGAAGGACAGAA +
Preference number: 4 (lower is better)
Translates to: CWWRGQPLVTVL*LDGVRQIRRTE
Trigger: TTCTGTCCTTCTTATCTGTCTAACACCATCGAGCAATAATACTGTAACCAATGGCTGACCTCTCCACCAACA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTGCGAGCTTCTTCTTCTaGATAGTTTCTTTCATCACA +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAASFFF*IVSFIT
Trigger: TGTGATGAAAGAAACTATTCAGAAGAAGAAGCTCGC...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGCGAGCTTCTTCTTCTaGATAGTTTCTTTCATCACA +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRASFFF*IVSFIT
Trigger: TGTGATGAAAGAAACTATTCAGAAGAAGAAGCTCGC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAGCTGAATGCTGGAAATaGACTTTTGTATCAGCAGTT +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTAECWK*TFVSAV
Trigger: AACTGCTGATACAAAAGTTCATTTCCAGCATTCAGC...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTGCTGAATGCTGGAAATaGACTTTTGTATCAGCAGTT +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAAECWK*TFVSAV
Trigger: AACTGCTGATACAAAAGTTCATTTCCAGCATTCAGC...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACATCTAGTCTCTCTCTTTaGGAGCTTCTTCTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTSSLSL*ELLLLN
Trigger: ATTCAGAAGAAGAAGCTCGCAAAGAGAGAGACTAGA...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATCTAGTCTCTCTCTTTaGGAGCTTCTTCTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRSSLSL*ELLLLN
Trigger: ATTCAGAAGAAGAAGCTCGCAAAGAGAGAGACTAGA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTCTCCAAAGTATGAGTTaGTCCATACAGGTTTACAAC +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIALQSMS*SIQVYN
Trigger: GTTGTAAACCTGTATGGACCAACTCATACTTTGGAG...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTTTTAAAAATGTCGGGTaGCATCAGCTCCAAAGTATG +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAFKNVG*HQLQSM
Trigger: CATACTTTGGAGCTGATGCCACCCGACATTTTTAAA...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATTTAAAAATGTCGGGTaGCATCAGCTCCAAAGTATG +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRFKNVG*HQLQSM
Trigger: CATACTTTGGAGCTGATGCCACCCGACATTTTTAAA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGTAAAGAACTGCTCTTaGTATCAGGTTGATAGTAGA +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRVKNCS*YQVDSR
Trigger: TCTACTATCAACCTGATATCAAGAGCAGTTCTTTAC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGATCAGCTCCAAAGTATaGGTTGGTCCATACAGGTTT +
Preference number: 4 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWISSKV*VGPYRF
Trigger: AAACCTGTATGGACCAACTCATACTTTGGAGCTGAT...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAAATAACAAGAAATGTTaGTTCATGGGGCTAAAGCTG +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTNNKKC*FMGLKL
Trigger: CAGCTTTAGCCCCATGAATCAACATTTCTTGTTATT...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTAATAACAAGAAATGTTaGTTCATGGGGCTAAAGCTG +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIANNKKC*FMGLKL
Trigger: CAGCTTTAGCCCCATGAATCAACATTTCTTGTTATT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGGGTGTCAATAAGAACTaGATCCCAGTCAACATGGAA +
Preference number: 4 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSEGVNKN*IPVNME
Trigger: TTCCATGTTGACTGGGATTCAGTTCTTATTGACACC...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGCCACGGCTCCACATTTaGAAAACTTCTCATCTGATT +
Preference number: 4 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWPRLHI*KTSHLI
Trigger: AATCAGATGAGAAGTTTTTCAAATGTGGAGCCGTGG...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAGCTGAATGCTGGAAATaGACTTTTGTATCAGCAGTT +
Preference number: 4 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKAECWK*TFVSAV
Trigger: AACTGCTGATACAAAAGTTCATTTCCAGCATTCAGC...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACACTTGATCAATTCTGCTaGATGCTGGAAATGAACTTT +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTLDQFC*MLEMNF
Trigger: AAAGTTCATTTCCAGCATTCAGCAGAATTGATCAAG...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR TCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTCTTGATCAATTCTGCTaGATGCTGGAAATGAACTTT +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIALDQFC*MLEMNF
Trigger: AAAGTTCATTTCCAGCATTCAGCAGAATTGATCAAG...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTATGCTTTGGGGTACAGTaGTCCAGTAAACCGAGGTAT +
Preference number: 4 (lower is better)
Translates to: NNSFNILAKTTSLISALLCFGVQ*SSKPRY
Trigger: ATACCTCGGTTTACTGGAGCACTGTACCCCAAAGCA...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR GCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTGTATGGGTACTGCTTTaGTTTGGGGTACAGTGCTCC +
Preference number: 4 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTVWVLL*FGVQCS
Trigger: GGAGCACTGTACCCCAAAGCAAAGCAGTACCCATAC...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR GCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTTCTGCCATCAAATCTTaGTACAATGACATTATCGGT +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIASAIKS*YNDIIG
Trigger: ACCGATAATGTCATTGTAGCAAGATTTGATGGCAGA...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATCTGCCATCAAATCTTaGTACAATGACATTATCGGT +
Preference number: 4 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRSAIKS*YNDIIG
Trigger: ACCGATAATGTCATTGTAGCAAGATTTGATGGCAGA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTCCAGCTTTTATCAGATaGTTGATCAATTCTGCTGAA +
Preference number: 4 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAPAFIR*LINSAE
Trigger: TTCAGCAGAATTGATCAAGCATCTGATAAAAGCTGG...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR GCA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACACCAGCTTTTATCAGATaGTTGATCAATTCTGCTGAA +
Preference number: 4 (lower is better)
Translates to: PSPPREQYATQWHCICLTPAFIR*LINSAE
Trigger: TTCAGCAGAATTGATCAAGCATCTGATAAAAGCTGG...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CCA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGAGGAACATAGCTATGTaGTGGAATTCTCCTCTTCCA +
Preference number: 4 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSERNIAM*WNSPLP
Trigger: TGGAAGAGGAGAATTCCACCACATAGCTATGTTCCT...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTCCGTTCAGAGAAAGCTaGGGCATACAACTTCATGTC +
Preference number: 4 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTPFRES*GIQLHV
Trigger: GACATGAAGTTGTATGCCTCAGCTTTCTCTGAACGG...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR GCA 90 bp ACCATAGAGAACAACAGAGCAACAGAACCTCCTTTATGTAATTTGAAAGTGAAATTTCCTGATGTCAGATaGCGCACCGTAATTTGCTCG +
Preference number: 4 (lower is better)
Translates to: TIENNRATEPPLCNLKVKFPDVR*RTVICS
Trigger: CGAGCAAATTACGGTGCGGCATCTGACATCAGGAAA...TTTCACTTTCAAATTACATAAAGGAGGTTCTGTTGCTCTGTTGTTCTCTATGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCAAAACTTTCAGGCCCTaGAATCCACTTCCTCTGCCA +
Preference number: 4 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPKTFRP*NPLPLP
Trigger: TGGCAGAGGAAGTGGATTCCAGGGCCTGAAAGTTTT...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGAATAACAAGAAATGTTaGTTCATGGGGCTAAAGCTG +
Preference number: 4 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWNNKKC*FMGLKL
Trigger: CAGCTTTAGCCCCATGAATCAACATTTCTTGTTATT...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp CCTGATTTACATGAACTTGATTTGCATGGCCCTGATTaGCAAGACGTTGATTTGCATGACCCTTATTTACAT +
Preference number: 4 (lower is better)
Translates to: PDLHELDLHGPD*QDVDLHDPYLH
Trigger: ATGTAAATAAGGGTCATGCAAATCAACGTCTTGCAAATCAGGGCCATGCAAATCAAGTTCATGTAAATCAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CCA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTATTTAAAAATGTCGGGTaGCATCAGCTCCAAAGTATG +
Preference number: 4 (lower is better)
Translates to: NNSFNILAKTTSLISALLFKNVG*HQLQSM
Trigger: CATACTTTGGAGCTGATGCCACCCGACATTTTTAAA...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CCA 90 bp ACCATAGAGAACAACAGAGCAACAGAACCTCCTTTATGTAATTTGAAAGTGAAATTATTCATCTTCTTCTaGTTCCTGTGGCAGCACAGA +
Preference number: 4 (lower is better)
Translates to: TIENNRATEPPLCNLKVKLFIFF*FLWQHR
Trigger: TCTGTGCTGCCACAGGAACCAGAAGAAGATGAATAA...TTTCACTTTCAAATTACATAAAGGAGGTTCTGTTGCTCTGTTGTTCTCTATGGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTCTCCAAAGTATGAGTTaGTCCATACAGGTTTACAAC +
Preference number: 4 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTLQSMS*SIQVYN
Trigger: GTTGTAAACCTGTATGGACCAACTCATACTTTGGAG...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTGTAAAGAACTGCTCTTaGTATCAGGTTGATAGTAGA +
Preference number: 4 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTVKNCS*YQVDSR
Trigger: TCTACTATCAACCTGATATCAAGAGCAGTTCTTTAC...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR TCA 90 bp CAAATCATCTTTTCTCAATTAATTCCTGTTTCAGAAGATCTGAATTCTCCTCCCCTTGATCAATTCTGCTaGATGCTGGAAATGAACTTT +
Preference number: 4 (lower is better)
Translates to: QIIFSQLIPVSEDLNSPPLDQFC*MLEMNF
Trigger: AAAGTTCATTTCCAGCATTCAGCAGAATTGATCAAG...GGGAGGAGAATTCAGATCTTCTGAAACAGGAATTAATTGAGAAAAGATGATTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR GCA 90 bp ACCATAGAGAACAACAGAGCAACAGAACCTCCTTTATGTAATTTGAAAGTGAAACCAGCTTTTATCAGATaGTTGATCAATTCTGCTGAA +
Preference number: 4 (lower is better)
Translates to: TIENNRATEPPLCNLKVKPAFIR*LINSAE
Trigger: TTCAGCAGAATTGATCAAGCATCTGATAAAAGCTGG...TTTCACTTTCAAATTACATAAAGGAGGTTCTGTTGCTCTGTTGTTCTCTATGGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
3UTR CAA 72 bp TTAATATGGAGAAATTATCATGGAGGAAGCTTGGCATaGAAGTCTCAGGAAACCTTCAGAATTTTGAATATG +
Preference number: 4 (lower is better)
Translates to: LIWRNYHGGSLA*KSQETFRILNM
Trigger: CATATTCAAAATTCTGAAGGTTTCCTGAGACTTCAATGCCAAGCTTCCTCCATGATAATTTCTCCATATTAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTGGCCCCTGGGGTGGGTaGCTGCTCCTGCTTCATGGC +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAGPWGG*LLLLHG
Trigger: GCCATGAAGCAGGAGCAGCAACCCACCCCAGGGGCC...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CAA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTACTGGCTGCGACTGGGTaGCCCTGGCCCCTGGGGTGG +
Preference number: 5 (lower is better)
Translates to: NNSFNILAKTTSLISALLLAATG*PWPLGW
Trigger: CCACCCCAGGGGCCAGGGCAACCCAGTCGCAGCCAG...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS TCA 90 bp ACAGCAGCTACTTGGTCCTTTGCCTCCACTGAGCCTATCCTTCTGTaGATCTCCTGCAAAACTTTCAGGCCCTGGAATCCACTTCCTCTG +
Preference number: 5 (lower is better)
Translates to: TAATWSFASTEPILL*ISCKTFRPWNPLPL
Trigger: CAGAGGAAGTGGATTCCAGGGCCTGAAAGTTTTGCAGGAGATTCACAGAAGGATAGGCTCAGTGGAGGCAAAGGACCAAGTAGCTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS GCA 90 bp TTGACCTGCCTTGGGGTATGGGTACTGCTTTGCTTTGGGGTACAGTaGTCCAGTAAACCGAGGTATGATCATGTTAGGCACCAACGAGTC +
Preference number: 5 (lower is better)
Translates to: LTCLGVWVLLCFGVQ*SSKPRYDHVRHQRV
Trigger: GACTCGTTGGTGCCTAACATGATCATACCTCGGTTTACTGGAGCACTGTACCCCAAAGCAAAGCAGTACCCATACCCCAAGGCAGGTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTAATCAGCTGCTGTCCTaGCACACCCCAGGCCGCATA +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIANQLLS*HTPGRI
Trigger: TATGCGGCCTGGGGTGTGCAAGGACAGCAGCTGATT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAAATCAGCTGCTGTCCTaGCACACCCCAGGCCGCATA +
Preference number: 5 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRNQLLS*HTPGRI
Trigger: TATGCGGCCTGGGGTGTGCAAGGACAGCAGCTGATT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CCA 90 bp AACAGGAACAGTCATGAAGAACTTGCTTCCATCTCTGGAAAACACTaGCTCCTCGTTCTGTTTAGAGAGCCAGGTGTCGGACGTCATCTC +
Preference number: 5 (lower is better)
Translates to: NRNSHEELASISGKH*LLVLFREPGVGRHL
Trigger: GAGATGACGTCCGACACCTGGCTCTCTAAACAGAACGAGGAGCCAGTGTTTTCCAGAGATGGAAGCAAGTTCTTCATGACTGTTCCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 90 bp GGTCCATACAGGTTTACAACATATAACTTCACTGATGGGTTCGCTTaGCCTGCCTTGGGGTATGGGTACTGCTTTGCTTTGGGGTACAGT +
Preference number: 5 (lower is better)
Translates to: GPYRFTTYNFTDGFA*PALGYGYCFALGYS
Trigger: ACTGTACCCCAAAGCAAAGCAGTACCCATACCCCAAGGCAGGTCAAGCGAACCCATCAGTGAAGTTATATGTTGTAAACCTGTATGGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GCCAGCTGTATCAGGAATCTTAAAATAAACCTTCCTTCCCTAAGTTGCATTTGGAATCAGCTGCTGTCCTaGCACACCCCAGGCCGCATA +
Preference number: 5 (lower is better)
Translates to: ASCIRNLKINLPSLSCIWNQLLS*HTPGRI
Trigger: TATGCGGCCTGGGGTGTGCAAGGACAGCAGCTGATT...CCAAATGCAACTTAGGGAAGGAAGGTTTATTTTAAGATTCCTGATACAGCTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CAA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAGGGTACTGCTTTGCTTaGGGGTACAGTGCTCCAGTA +
Preference number: 5 (lower is better)
Translates to: PSPPREQYATQWHCICLTGYCFA*GYSAPV
Trigger: TACTGGAGCACTGTACCCCAAAGCAAAGCAGTACCC...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTGGGTACTGCTTTGCTTaGGGGTACAGTGCTCCAGTA +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAGYCFA*GYSAPV
Trigger: TACTGGAGCACTGTACCCCAAAGCAAAGCAGTACCC...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTTCCCTTCCAGTTTCTTaGTGGAGGGCTGTTACTTCC +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIASLPVS*WRAVTS
Trigger: GGAAGTAACAGCCCTCCACAAAGAAACTGGAAGGGA...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACATCCCTTCCAGTTTCTTaGTGGAGGGCTGTTACTTCC +
Preference number: 5 (lower is better)
Translates to: PSPPREQYATQWHCICLTSLPVS*WRAVTS
Trigger: GGAAGTAACAGCCCTCCACAAAGAAACTGGAAGGGA...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATCCCTTCCAGTTTCTTaGTGGAGGGCTGTTACTTCC +
Preference number: 5 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRSLPVS*WRAVTS
Trigger: GGAAGTAACAGCCCTCCACAAAGAAACTGGAAGGGA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAACCACTGTCCTCGTGTaGCTCACCCATTTAACCATG +
Preference number: 5 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRTTVLV*LTHLTM
Trigger: CATGGTTAAATGGGTGAGCAACACGAGGACAGTGGT...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTACCACTGTCCTCGTGTaGCTCACCCATTTAACCATG +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIATTVLV*LTHLTM
Trigger: CATGGTTAAATGGGTGAGCAACACGAGGACAGTGGT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAATGCCGCACCGTAATTaGCTCGCTTTTACTCTGGAC +
Preference number: 5 (lower is better)
Translates to: PSPPREQYATQWHCICLTMPHRN*LAFTLD
Trigger: GTCCAGAGTAAAAGCGAGCAAATTACGGTGCGGCAT...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTATGCCGCACCGTAATTaGCTCGCTTTTACTCTGGAC +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAMPHRN*LAFTLD
Trigger: GTCCAGAGTAAAAGCGAGCAAATTACGGTGCGGCAT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 90 bp AGTTGTTTCATCATAGGCCAAGATCCTTATCACTTCCCAGTTTCCTaGTGTCAGATGCCGCACCGTAATTTGCTCGCTTTTACTCTGGAC +
Preference number: 5 (lower is better)
Translates to: SCFIIGQDPYHFPVS*CQMPHRNLLAFTLD
Trigger: GTCCAGAGTAAAAGCGAGCAAATTACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTGATAAGGATCTTGGCCTATGATGAAACAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGACTTATCTGTCACCATTaGGCCTCCTGGTTCTTCATC +
Preference number: 5 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRLICHH*ASWFFI
Trigger: GATGAAGAACCAGGAGGCCAAATGGTGACAGATAAG...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACACTTATCTGTCACCATTaGGCCTCCTGGTTCTTCATC +
Preference number: 5 (lower is better)
Translates to: PSPPREQYATQWHCICLTLICHH*ASWFFI
Trigger: GATGAAGAACCAGGAGGCCAAATGGTGACAGATAAG...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTAAGTGCTTTCTTCCTTaGATGGCATGCCAAGGTACC +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAKCFLP*MACQGT
Trigger: GGTACCTTGGCATGCCATCAAAGGAAGAAAGCACTT...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAAAGTGCTTTCTTCCTTaGATGGCATGCCAAGGTACC +
Preference number: 5 (lower is better)
Translates to: PSPPREQYATQWHCICLTKCFLP*MACQGT
Trigger: GGTACCTTGGCATGCCATCAAAGGAAGAAAGCACTT...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 90 bp GAATTGTTTTCCAAGAGGAAATACCTTGATGGGTTGTCTGTGATGTaGAGGCTGACCACTGGGACCTTTGGACCTTCACAGAATAACAAG +
Preference number: 5 (lower is better)
Translates to: ELFSKRKYLDGLSVM*RLTTGTFGPSQNNK
Trigger: CTTGTTATTCTGTGAAGGTCCAAAGGTCCCAGTGGTCAGCCTTCACATCACAGACAACCCATCAAGGTATTTCCTCTTGGAAAACAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CCA 90 bp ACCGTAATTTGCTCGCTTTTACTCTGGACCAGGAACATAGCTATGTaGTGGAATTCTCCTCTTCCACCTTGTTTAACAGGAACAGTCATG +
Preference number: 5 (lower is better)
Translates to: TVICSLLLWTRNIAM*WNSPLPPCLTGTVM
Trigger: CATGACTGTTCCTGTTAAACAAGGTGGAAGAGGAGAATTCCACCACATAGCTATGTTCCTGGTCCAGAGTAAAAGCGAGCAAATTACGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAACTTATCTGTCACCATTaGGCCTCCTGGTTCTTCATC +
Preference number: 5 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKLICHH*ASWFFI
Trigger: GATGAAGAACCAGGAGGCCAAATGGTGACAGATAAG...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS TCA 90 bp TTATATACCACGACTGTATCATTGATCCACCGAGGTTCTGGATTATaGAGTCCGAATCCTTTCCCCAAAAGCTCCTCTAGTGACAGTCTT +
Preference number: 5 (lower is better)
Translates to: LYTTTVSLIHRGSGL*SPNPFPKSSSSDSL
Trigger: AAGACTGTCACTAGAGGAGCTTTTGGGGAAAGGATTCGGACTTCATAATCCAGAACCTCGGTGGATCAATGATACAGTCGTGGTATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 90 bp CTGACCACTGGGACCTTTGGACCTTCACAGAATAACAAGAAATGTTaGTTCATGGGGCTAAAGCTGGCATCAAAATACGTGCAATCTTCT +
Preference number: 5 (lower is better)
Translates to: LTTGTFGPSQNNKKC*FMGLKLASKYVQSS
Trigger: AGAAGATTGCACGTATTTTGATGCCAGCTTTAGCCCCATGAATCAACATTTCTTGTTATTCTGTGAAGGTCCAAAGGTCCCAGTGGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS GCA 90 bp CTTTTAAACCATGAATGTTATGCAGTACACTGGATGCCTGGTAAGTaGTTTCTTCCTTTGATGGCATGCCAAGGTACCGTTCAGAGAAAG +
Preference number: 5 (lower is better)
Translates to: LLNHECYAVHWMPGK*FLPLMACQGTVQRK
Trigger: CTTTCTCTGAACGGTACCTTGGCATGCCATCAAAGGAAGAAAGCACTTACCAGGCATCCAGTGTACTGCATAACATTCATGGTTTAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CCA 90 bp GTAATTTGCTCGCTTTTACTCTGGACCAGGAACATAGCTATGTGGTaGAATTCTCCTCTTCCACCTTGTTTAACAGGAACAGTCATGAAG +
Preference number: 5 (lower is better)
Translates to: VICSLLLWTRNIAMW*NSPLPPCLTGTVMK
Trigger: CTTCATGACTGTTCCTGTTAAACAAGGTGGAAGAGGAGAATTCCACCACATAGCTATGTTCCTGGTCCAGAGTAAAAGCGAGCAAATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTAGGGTACTGCTTTGCTTaGGGGTACAGTGCTCCAGTA +
Preference number: 5 (lower is better)
Translates to: NNSFNILAKTTSLISALLGYCFA*GYSAPV
Trigger: TACTGGAGCACTGTACCCCAAAGCAAAGCAGTACCC...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CAA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACATTCTCCTCTTCCACCTaGTTTAACAGGAACAGTCAT +
Preference number: 5 (lower is better)
Translates to: PSPPREQYATQWHCICLTFSSST*FNRNSH
Trigger: ATGACTGTTCCTGTTAAACAAGGTGGAAGAGGAGAA...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGATTCTCCTCTTCCACCTaGTTTAACAGGAACAGTCAT +
Preference number: 5 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRFSSST*FNRNSH
Trigger: ATGACTGTTCCTGTTAAACAAGGTGGAAGAGGAGAA...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACAACCACGGCTCCACATTaGAAAAACTTCTCATCTGAT +
Preference number: 5 (lower is better)
Translates to: PSPPREQYATQWHCICLTTTAPH*KNFSSD
Trigger: ATCAGATGAGAAGTTTTTCAAATGTGGAGCCGTGGT...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGCTGGAAATGAACTTTaGTATCAGCAGTTCCGTGAA +
Preference number: 5 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRAGNEL*YQQFRE
Trigger: TTCACGGAACTGCTGATACAAAAGTTCATTTCCAGC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTGCTGGAAATGAACTTTaGTATCAGCAGTTCCGTGAA +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAAGNEL*YQQFRE
Trigger: TTCACGGAACTGCTGATACAAAAGTTCATTTCCAGC...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 90 bp AATAGTTTCTTTCATCACAGAATTGTTTTCCAAGAGGAAATACCTTaGTGGGTTGTCTGTGATGTGAAGGCTGACCACTGGGACCTTTGG +
Preference number: 5 (lower is better)
Translates to: NSFFHHRIVFQEEIP*WVVCDVKADHWDLW
Trigger: CCAAAGGTCCCAGTGGTCAGCCTTCACATCACAGACAACCCATCAAGGTATTTCCTCTTGGAAAACAATTCTGTGATGAAAGAAACTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAACCACGGCTCCACATTaGAAAAACTTCTCATCTGAT +
Preference number: 5 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKTTAPH*KNFSSD
Trigger: ATCAGATGAGAAGTTTTTCAAATGTGGAGCCGTGGT...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CAA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGAGCTTTTATCAGATGCTaGATCAATTCTGCTGAATGC +
Preference number: 5 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRAFIRC*INSAEC
Trigger: GCATTCAGCAGAATTGATCAAGCATCTGATAAAAGC...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GGGCTTAGTTTAACAGCAATAGATGCATTGAGCAGGCATGGAATGCTGAGTAGACCTCTAGTGACAGTCTaGTTTCTGAAGAATTTGTTA +
Preference number: 5 (lower is better)
Translates to: GLSLTAIDALSRHGMLSRPLVTV*FLKNLL
Trigger: TAACAAATTCTTCAGAAACAAGACTGTCACTAGAGG...TCTACTCAGCATTCCATGCCTGCTCAATGCATCTATTGCTGTTAAACTAAGCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTCCTCTAGTGACAGTCTaGTTTCTGAAGAATTTGTTA +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIAPLVTV*FLKNLL
Trigger: TAACAAATTCTTCAGAAACAAGACTGTCACTAGAGG...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTACCACTGTCCTCGTGTaGCTCACCCATTTAACCATG +
Preference number: 5 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTTTVLV*LTHLTM
Trigger: CATGGTTAAATGGGTGAGCAACACGAGGACAGTGGT...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CAA 90 bp CATTTATTCCACAGTTTAACCCAACTTAAGGAAGAATGCTGTGAATTCAGAACTATGCCGCACCGTAATTaGCTCGCTTTTACTCTGGAC +
Preference number: 5 (lower is better)
Translates to: HLFHSLTQLKEECCEFRTMPHRN*LAFTLD
Trigger: GTCCAGAGTAAAAGCGAGCAAATTACGGTGCGGCAT...AGTTCTGAATTCACAGCATTCTTCCTTAAGTTGGGTTAAACTGTGGAATAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS-3UTR CAA 90 bp CCTTCTCCACCAAGAGAGCAATATGCCACTCAGTGGCATTGCATTTGTTTAACATCTTCTTTCATAAAGTaGCATGAGATGCAATCACGA +
Preference number: 5 (lower is better)
Translates to: PSPPREQYATQWHCICLTSSFIK*HEMQSR
Trigger: TCGTGATTGCATCTCATGCAACTTTATGAAAGAAGA...TGTTAAACAAATGCAATGCCACTGAGTGGCATATTGCTCTCTTGGTGGAGAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTTCTTCTTTCATAAAGTaGCATGAGATGCAATCACGA +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIASSFIK*HEMQSR
Trigger: TCGTGATTGCATCTCATGCAACTTTATGAAAGAAGA...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp GTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAATGCAATACCACGTATTGCTCTGATTTTAAGATCATaGATGCAATATAGCCCCCAT +
Preference number: 5 (lower is better)
Translates to: VGFGTPCPVHLNAIPRIALILRS*MQYSPH
Trigger: ATGGGGGCTATATTGCATCAATGATCTTAAAATCAG...AGCAATACGTGGTATTGCATTTAAATGGACAGGACACGGGGTACCAAATCCTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp TATTCTCCTGCAGGTGGTGTAAAAGGACACCCTGGAAATCTGCACAAAGAAAAAGCTTTTATCAGATGCTaGATCAATTCTGCTGAATGC +
Preference number: 5 (lower is better)
Translates to: YSPAGGVKGHPGNLHKEKAFIRC*INSAEC
Trigger: GCATTCAGCAGAATTGATCAAGCATCTGATAAAAGC...TTTTTCTTTGTGCAGATTTCCAGGGTGTCCTTTTACACCACCTGCAGGAGAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS TCA 90 bp TATTCTCTTGATTTAAAAATGTCGGGTGGCATCAGCTCCAAAGTATaGGTTGGTCCATACAGGTTTACAACATATAACTTCACTGATGGG +
Preference number: 5 (lower is better)
Translates to: YSLDLKMSGGISSKV*VGPYRFTTYNFTDG
Trigger: CCCATCAGTGAAGTTATATGTTGTAAACCTGTATGGACCAACTCATACTTTGGAGCTGATGCCACCCGACATTTTTAAATCAAGAGAATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp TTCTGTTGTATGAGGACATTTCAAGACCAATCAACATGCAAAAGCTGGAGTGAGCTGATTTTAAGATCATaGATGCAATATAGCCCCCAT +
Preference number: 5 (lower is better)
Translates to: FCCMRTFQDQSTCKSWSELILRS*MQYSPH
Trigger: ATGGGGGCTATATTGCATCAATGATCTTAAAATCAG...CTCACTCCAGCTTTTGCATGTTGATTGGTCTTGAAATGTCCTCATACAACAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS TCA 90 bp GAAGAATCTGAGAATTGTGCTGTAAAAATGATGCTTGCTCTTGTCTaGAATGTGATATCCTTCATCTGGATAGACCTGCAGAGTGTAATT +
Preference number: 5 (lower is better)
Translates to: EESENCAVKMMLALV*NVISFIWIDLQSVI
Trigger: AATTACACTCTGCAGGTCTATCCAGATGAAGGATATCACATTTCAGACAAGAGCAAGCATCATTTTTACAGCACAATTCTCAGATTCTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp ACCATAGAGAACAACAGAGCAACAGAACCTCCTTTATGTAATTTGAAAGTGAAAGCTGGAAATGAACTTTaGTATCAGCAGTTCCGTGAA +
Preference number: 5 (lower is better)
Translates to: TIENNRATEPPLCNLKVKAGNEL*YQQFRE
Trigger: TTCACGGAACTGCTGATACAAAAGTTCATTTCCAGC...TTTCACTTTCAAATTACATAAAGGAGGTTCTGTTGCTCTGTTGTTCTCTATGGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS CCA 90 bp ATTTGGCCTCCTGGTTCTTCATCCATTATTAATAGAAGAGCATACTaGTTTTTCTCCATAAAATCTTTGGGAAAGGACAACTGTAAAGGA +
Preference number: 5 (lower is better)
Translates to: IWPPGSSSIINRRAY*FFSIKSLGKDNCKG
Trigger: TCCTTTACAGTTGTCCTTTCCCAAAGATTTTATGGAGAAAAACCAGTATGCTCTTCTATTAATAATGGATGAAGAACCAGGAGGCCAAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS-3UTR CAA 90 bp AATAATTCTTTCAATATCTTAGCAAAGACAACAAGCCTCATCAGTGCCCTCCTACCTCTAGTGACAGTCTaGTTTCTGAAGAATTTGTTA +
Preference number: 5 (lower is better)
Translates to: NNSFNILAKTTSLISALLPLVTV*FLKNLL
Trigger: TAACAAATTCTTCAGAAACAAGACTGTCACTAGAGG...TAGGAGGGCACTGATGAGGCTTGTTGTCTTTGCTAAGATATTGAAAGAATTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS GCA 90 bp AGGAAGTTCATAGTCATCAATGTGAAGTATTCTAGTCTCTCTCTTTaGGAGCTTCTTCTTCTGAATAGTTTCTTTCATCACAGAATTGTT +
Preference number: 5 (lower is better)
Translates to: RKFIVINVKYSSLSL*ELLLLNSFFHHRIV
Trigger: AACAATTCTGTGATGAAAGAAACTATTCAGAAGAAGAAGCTCGCAAAGAGAGAGACTAGAATACTTCACATTGATGACTATGAACTTCCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CCA 72 bp CTAGTTCCTGGTCGGCTGGCTGCGACTGGGTTGCCCTaGCCCCTGGGGTGGGTTGCTGCTCCTGCTTCATGG +
Preference number: 6 (lower is better)
Translates to: LVPGRLAATGLP*PLGWVAAPASW
Trigger: CCATGAAGCAGGAGCAGCAACCCACCCCAGGGGCCAGGGCAACCCAGTCGCAGCCAGCCGACCAGGAACTAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS CCA 72 bp CTGTTACTTCCTAGTTCCTGGTCGGCTGGCTGCGACTaGGTTGCCCTGGCCCCTGGGGTGGGTTGCTGCTCC +
Preference number: 6 (lower is better)
Translates to: LLLPSSWSAGCD*VALAPGVGCCS
Trigger: GGAGCAGCAACCCACCCCAGGGGCCAGGGCAACCCAGTCGCAGCCAGCCGACCAGGAACTAGGAAGTAACAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS CAA 72 bp TACTTCCTAGTTCCTGGTCGGCTGGCTGCGACTGGGTaGCCCTGGCCCCTGGGGTGGGTTGCTGCTCCTGCT +
Preference number: 6 (lower is better)
Translates to: YFLVPGRLAATG*PWPLGWVAAPA
Trigger: AGCAGGAGCAGCAACCCACCCCAGGGGCCAGGGCAACCCAGTCGCAGCCAGCCGACCAGGAACTAGGAAGTA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS CAA 90 bp GAGGGCTGTTACTTCCTAGTTCCTGGTCGGCTGGCTGCGACTGGGTaGCCCTGGCCCCTGGGGTGGGTTGCTGCTCCTGCTTCATGGCTG +
Preference number: 6 (lower is better)
Translates to: EGCYFLVPGRLAATG*PWPLGWVAAPASWL
Trigger: CAGCCATGAAGCAGGAGCAGCAACCCACCCCAGGGGCCAGGGCAACCCAGTCGCAGCCAGCCGACCAGGAACTAGGAAGTAACAGCCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112606.8
CDS TCA 72 bp CTGTCCTTGCACACCCCAGGCCGCATACTGCAACACTaGGTCCTCAACTTCTGGGGGATTCAACTCCCACAC +
Preference number: 6 (lower is better)
Translates to: LSLHTPGRILQH*VLNFWGIQLPH
Trigger: GTGTGGGAGTTGAATCCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGGTGTGCAAGGACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS GCA 72 bp CCAGGTGTCGGACGTCATCTCATATTTCCTGCTGCATaGCCCGGTGGTAGATTCACAGAGTGTGAGGATGGA +
Preference number: 6 (lower is better)
Translates to: PGVGRHLIFPAA*PGGRFTECEDG
Trigger: TCCATCCTCACACTCTGTGAATCTACCACCGGGGCATGCAGCAGGAAATATGAGATGACGTCCGACACCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS GCA 72 bp GTTCGCTTGACCTGCCTTGGGGTATGGGTACTGCTTTaGTTTGGGGTACAGTGCTCCAGTAAACCGAGGTAT +
Preference number: 6 (lower is better)
Translates to: VRLTCLGVWVLL*FGVQCSSKPRY
Trigger: ATACCTCGGTTTACTGGAGCACTGTACCCCAAAGCAAAGCAGTACCCATACCCCAAGGCAGGTCAAGCGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 72 bp TCCAAGAGGAAATACCTTGATGGGTTGTCTGTGATGTaGAGGCTGACCACTGGGACCTTTGGACCTTCACAG +
Preference number: 6 (lower is better)
Translates to: SKRKYLDGLSVM*RLTTGTFGPSQ
Trigger: CTGTGAAGGTCCAAAGGTCCCAGTGGTCAGCCTTCACATCACAGACAACCCATCAAGGTATTTCCTCTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 72 bp ACTTGGTCCTTTGCCTCCACTGAGCCTATCCTTCTGTaGATCTCCTGCAAAACTTTCAGGCCCTGGAATCCA +
Preference number: 6 (lower is better)
Translates to: TWSFASTEPILL*ISCKTFRPWNP
Trigger: TGGATTCCAGGGCCTGAAAGTTTTGCAGGAGATTCACAGAAGGATAGGCTCAGTGGAGGCAAAGGACCAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS GCA 72 bp CTTGGGGTATGGGTACTGCTTTGCTTTGGGGTACAGTaGTCCAGTAAACCGAGGTATGATCATGTTAGGCAC +
Preference number: 6 (lower is better)
Translates to: LGVWVLLCFGVQ*SSKPRYDHVRH
Trigger: GTGCCTAACATGATCATACCTCGGTTTACTGGAGCACTGTACCCCAAAGCAAAGCAGTACCCATACCCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CCA 72 bp CATATAACTTCACTGATGGGTTCGCTTGACCTGCCTTaGGGTATGGGTACTGCTTTGCTTTGGGGTACAGTG +
Preference number: 6 (lower is better)
Translates to: HITSLMGSLDLP*GMGTALLWGTV
Trigger: CACTGTACCCCAAAGCAAAGCAGTACCCATACCCCAAGGCAGGTCAAGCGAACCCATCAGTGAAGTTATATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS GCA 72 bp TCCCAGTTTCCTGATGTCAGATGCCGCACCGTAATTTaGTCGCTTTTACTCTGGACCAGGAACATAGCTATG +
Preference number: 6 (lower is better)
Translates to: SQFPDVRCRTVI*SLLLWTRNIAM
Trigger: CATAGCTATGTTCCTGGTCCAGAGTAAAAGCGAGCAAATTACGGTGCGGCATCTGACATCAGGAAACTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CCA 72 bp AGTCATGAAGAACTTGCTTCCATCTCTGGAAAACACTaGCTCCTCGTTCTGTTTAGAGAGCCAGGTGTCGGA +
Preference number: 6 (lower is better)
Translates to: SHEELASISGKH*LLVLFREPGVG
Trigger: TCCGACACCTGGCTCTCTAAACAGAACGAGGAGCCAGTGTTTTCCAGAGATGGAAGCAAGTTCTTCATGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CAA 90 bp GAATGTTATGCAGTACACTGGATGCCTGGTAAGTGCTTTCTTCCTTaGATGGCATGCCAAGGTACCGTTCAGAGAAAGCTGAGGCATACA +
Preference number: 6 (lower is better)
Translates to: ECYAVHWMPGKCFLP*MACQGTVQRKLRHT
Trigger: TGTATGCCTCAGCTTTCTCTGAACGGTACCTTGGCATGCCATCAAAGGAAGAAAGCACTTACCAGGCATCCAGTGTACTGCATAACATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS GCA 72 bp AAGATCCTTATCACTTCCCAGTTTCCTGATGTCAGATaGCGCACCGTAATTTGCTCGCTTTTACTCTGGACC +
Preference number: 6 (lower is better)
Translates to: KILITSQFPDVR*RTVICSLLLWT
Trigger: GGTCCAGAGTAAAAGCGAGCAAATTACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTGATAAGGATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 72 bp AGGTTTACAACATATAACTTCACTGATGGGTTCGCTTaGCCTGCCTTGGGGTATGGGTACTGCTTTGCTTTG +
Preference number: 6 (lower is better)
Translates to: RFTTYNFTDGFA*PALGYGYCFAL
Trigger: CAAAGCAAAGCAGTACCCATACCCCAAGGCAGGTCAAGCGAACCCATCAGTGAAGTTATATGTTGTAAACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS GCA 72 bp CATGAATGTTATGCAGTACACTGGATGCCTGGTAAGTaGTTTCTTCCTTTGATGGCATGCCAAGGTACCGTT +
Preference number: 6 (lower is better)
Translates to: HECYAVHWMPGK*FLPLMACQGTV
Trigger: AACGGTACCTTGGCATGCCATCAAAGGAAGAAAGCACTTACCAGGCATCCAGTGTACTGCATAACATTCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CCA 72 bp ATATACCACGACTGTATCATTGATCCACCGAGGTTCTaGATTATGAAGTCCGAATCCTTTCCCCAAAAGCTC +
Preference number: 6 (lower is better)
Translates to: IYHDCIIDPPRF*IMKSESFPQKL
Trigger: GAGCTTTTGGGGAAAGGATTCGGACTTCATAATCCAGAACCTCGGTGGATCAATGATACAGTCGTGGTATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CCA 72 bp TCGCTTTTACTCTGGACCAGGAACATAGCTATGTGGTaGAATTCTCCTCTTCCACCTTGTTTAACAGGAACA +
Preference number: 6 (lower is better)
Translates to: SLLLWTRNIAMW*NSPLPPCLTGT
Trigger: TGTTCCTGTTAAACAAGGTGGAAGAGGAGAATTCCACCACATAGCTATGTTCCTGGTCCAGAGTAAAAGCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 72 bp ATATTTTACAGCAGCTACTTGGTCCTTTGCCTCCACTaGGCCTATCCTTCTGTGAATCTCCTGCAAAACTTT +
Preference number: 6 (lower is better)
Translates to: IFYSSYLVLCLH*AYPSVNLLQNF
Trigger: AAAGTTTTGCAGGAGATTCACAGAAGGATAGGCTCAGTGGAGGCAAAGGACCAAGTAGCTGCTGTAAAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CAA 72 bp GTTTCAGTAAATATTTTACAGCAGCTACTTGGTCCTTaGCCTCCACTGAGCCTATCCTTCTGTGAATCTCCT +
Preference number: 6 (lower is better)
Translates to: VSVNILQQLLGP*PPLSLSFCESP
Trigger: AGGAGATTCACAGAAGGATAGGCTCAGTGGAGGCAAAGGACCAAGTAGCTGCTGTAAAATATTTACTGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 72 bp GTCCATTGTTGGTTTTATATACCACGACTGTATCATTaGTCCACCGAGGTTCTGGATTATGAAGTCCGAATC +
Preference number: 6 (lower is better)
Translates to: VHCWFYIPRLYH*STEVLDYEVRI
Trigger: GATTCGGACTTCATAATCCAGAACCTCGGTGGATCAATGATACAGTCGTGGTATATAAAACCAACAATGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CAA 90 bp GGGCTAAAGCTGGCATCAAAATACGTGCAATCTTCTTTCATAAAGTaGCATGAGATGCAATCACGATTCAATAGTCCCTCAGTAGAAGCA +
Preference number: 6 (lower is better)
Translates to: GLKLASKYVQSSFIK*HEMQSRFNSPSVEA
Trigger: TGCTTCTACTGAGGGACTATTGAATCGTGATTGCATCTCATGCAACTTTATGAAAGAAGATTGCACGTATTTTGATGCCAGCTTTAGCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CAA 90 bp AATGTGGAAGCATTTGATTCTGTATTCAGTTTCATGACGTGTCCATaGTTGGTTTTATATACCACGACTGTATCATTGATCCACCGAGGT +
Preference number: 6 (lower is better)
Translates to: NVEAFDSVFSFMTCP*LVLYTTTVSLIHRG
Trigger: ACCTCGGTGGATCAATGATACAGTCGTGGTATATAAAACCAACAATGGACACGTCATGAAACTGAATACAGAATCAAATGCTTCCACATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CAA 90 bp GGGGAAAGTGAGTGTCTGGAGGCTTTAAACGTTACAAAAGTTGAGTaGTCCAATAACAATGTGGAAGCATTTGATTCTGTATTCAGTTTC +
Preference number: 6 (lower is better)
Translates to: GESECLEALNVTKVE*SNNNVEAFDSVFSF
Trigger: GAAACTGAATACAGAATCAAATGCTTCCACATTGTTATTGGACAACTCAACTTTTGTAACGTTTAAAGCCTCCAGACACTCACTTTCCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 72 bp GATTTAAAAATGTCGGGTGGCATCAGCTCCAAAGTATaGGTTGGTCCATACAGGTTTACAACATATAACTTC +
Preference number: 6 (lower is better)
Translates to: DLKMSGGISSKV*VGPYRFTTYNF
Trigger: GAAGTTATATGTTGTAAACCTGTATGGACCAACTCATACTTTGGAGCTGATGCCACCCGACATTTTTAAATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS TCA 72 bp ACAATGTGGAAGCATTTGATTCTGTATTCAGTTTCATaGCGTGTCCATTGTTGGTTTTATATACCACGACTG +
Preference number: 6 (lower is better)
Translates to: TMWKHLILYSVS*RVHCWFYIPRL
Trigger: CAGTCGTGGTATATAAAACCAACAATGGACACGTCATGAAACTGAATACAGAATCAAATGCTTCCACATTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS GCA 72 bp ATAGTCATCAATGTGAAGTATTCTAGTCTCTCTCTTTaGGAGCTTCTTCTTCTGAATAGTTTCTTTCATCAC +
Preference number: 6 (lower is better)
Translates to: IVINVKYSSLSL*ELLLLNSFFHH
Trigger: GTGATGAAAGAAACTATTCAGAAGAAGAAGCTCGCAAAGAGAGAGACTAGAATACTTCACATTGATGACTAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2
CDS CAA 72 bp GCATTTGATTCTGTATTCAGTTTCATGACGTGTCCATaGTTGGTTTTATATACCACGACTGTATCATTGATC +
Preference number: 6 (lower is better)
Translates to: AFDSVFSFMTCP*LVLYTTTVSLI
Trigger: GATCAATGATACAGTCGTGGTATATAAAACCAACAATGGACACGTCATGAAACTGAATACAGAATCAAATGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112603.4
ENSMUST00000112606.8
ENSMUST00000239072.2