Pregenerated sensors for DPEP2NB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000115768Ensembl transcript IDs: ENSMUST00000227778.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | AAAGGAACATGGAGGCCTTGGGTATGGGGTTGGAGATGGGTTTGCTaGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCGCCCC | + |
Preference number: 1 (lower is better) Translates to: KGTWRPWVWGWRWVC*TWSTVFQLQLARRP Trigger: GGGGCGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGTTCCTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR GCA 90 bp | GTTAAAGGAACATGGAGGCCTTGGGTATGGGGTTGGAGATGGGTTTaGTGGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCGC | + |
Preference number: 1 (lower is better) Translates to: VKGTWRPWVWGWRWV*WTWSTVFQLQLARR Trigger: GCGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGTTCCTTTAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR GCA 90 bp | CCCTTTCTGCTTCCCAAGACGCCTCTAGAGGACCAAGAGGACAGGTaGTGTGCAGAGCAACTCTACTCTGAGACTTCTTGCTCACGGCTA | + |
Preference number: 1 (lower is better) Translates to: PFLLPKTPLEDQEDR*CAEQLYSETSCSRL Trigger: TAGCCGTGAGCAAGAAGTCTCAGAGTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTCCTCTAGAGGCGTCTTGGGAAGCAGAAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR CCA 90 bp | GCTGAAGTTAAAGGAACATGGAGGCCTTGGGTATGGGGTTGGAGATaGGTTTGCTGGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCG | + |
Preference number: 1 (lower is better) Translates to: AEVKGTWRPWVWGWR*VCWTWSTVFQLQLA Trigger: CGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGTTCCTTTAACTTCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR TCA 90 bp | ACAGCTGTGGTTCTGCCTACATTGGTGTTCAGTAGAGGGCATTGCTaGAGAGGGCTCAACCTCCTGAGGCAGCTAGCAGCCTTTCTTCTC | + |
Preference number: 1 (lower is better) Translates to: TAVVLPTLVFSRGHC*RGLNLLRQLAAFLL Trigger: GAGAAGAAAGGCTGCTAGCTGCCTCAGGAGGTTGAGCCCTCTTCAGCAATGCCCTCTACTGAACACCAATGTAGGCAGAACCACAGCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR TCA 90 bp | TCTAGAGGACCAAGAGGACAGGTGCTGTGCAGAGCAACTCTACTCTaGGACTTCTTGCTCACGGCTAGTTGGCATTCAGGTGGGCTCTTG | + |
Preference number: 1 (lower is better) Translates to: SRGPRGQVLCRATLL*DFLLTASWHSGGLL Trigger: CAAGAGCCCACCTGAATGCCAACTAGCCGTGAGCAAGAAGTCTCAGAGTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTCCTCTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR-3UTR GCA 90 bp | TGCTGGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCGCCCCGGGGCTGACCAAGAGGACAGGTaGTGTGCAGAGCAACTCTAC | + |
Preference number: 2 (lower is better) Translates to: CWTWSTVFQLQLARRPGADQEDR*CAEQLY Trigger: GTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTC...AGCCCCGGGGCGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR-3UTR GCA 90 bp | GCTTGTGCTGGTGGCTGCTGGCATGATTCAGAGCAGAGCATACTCAGAGAGACAAGGTGGGCTCTTGACTaGAGAGCATGCAGGCAGAAC | + |
Preference number: 2 (lower is better) Translates to: ACAGGCWHDSEQSILRETRWALD*RACRQN Trigger: GTTCTGCCTGCATGCTCTGCAGTCAAGAGCCCACCT...TGTCTCTCTGAGTATGCTCTGCTCTGAATCATGCCAGCAGCCACCAGCACAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR CAA 90 bp | AGAGAGACAGCTCCGGTTTGGTCCCTCTGTATCTTCTCTCTGCACTaGTCTCCTCAACTCAGCTCAACTCAGAGCAGACCGCCCCTTTCT | + |
Preference number: 2 (lower is better) Translates to: RETAPVWSLCIFSLH*SPQLSSTQSRPPLS Trigger: AGAAAGGGGCGGTCTGCTCTGAGTTGAGCTGAGTTGAGGAGACAAGTGCAGAGAGAAGATACAGAGGGACCAAACCGGAGCTGTCTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR-3UTR TCA 90 bp | CACTTGTCTCCTCAACTCAGCTCAACTCAGAGCAGACCGCCCCTTTCTGCTTCCAGAGCAACTCTACTCTaGGACTTCTTGCTCACGGCT | + |
Preference number: 2 (lower is better) Translates to: HLSPQLSSTQSRPPLSASRATLL*DFLLTA Trigger: AGCCGTGAGCAAGAAGTCTCAGAGTAGAGTTGCTCT...GGAAGCAGAAAGGGGCGGTCTGCTCTGAGTTGAGCTGAGTTGAGGAGACAAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR-3UTR CCA 90 bp | CCCAAGACGCCTCTAGAGGACCAAGAGGACAGGTGCTGTGCAGAGCAACTCTACTGGTTCTGCCTACATTaGTGTTCAGTAGAGGGCATT | + |
Preference number: 2 (lower is better) Translates to: PKTPLEDQEDRCCAEQLYWFCLH*CSVEGI Trigger: AATGCCCTCTACTGAACACCAATGTAGGCAGAACCA...GTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTCCTCTAGAGGCGTCTTGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR-3UTR TCA 90 bp | TCCTTTATTAACTACTGCTCATTTCTTCCAGGTTTAGGAAGTCCAGCCACTCCTATTCAGGTGGGCTCTTaGCTGCAGAGCATGCAGGCA | + |
Preference number: 2 (lower is better) Translates to: SFINYCSFLPGLGSPATPIQVGS*LQSMQA Trigger: TGCCTGCATGCTCTGCAGTCAAGAGCCCACCTGAAT...AGGAGTGGCTGGACTTCCTAAACCTGGAAGAAATGAGCAGTAGTTAATAAAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR-3UTR CAA 90 bp | TTGCTGGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCGCCCCGGGGCCCAGCCACTCCTGGCTaGTGCTGGTGGCTGCTGGCA | + |
Preference number: 3 (lower is better) Translates to: LLDLVHSVPAPASASPRGPATPG*CWWLLA Trigger: TGCCAGCAGCCACCAGCACAAGCCAGGAGTGGCTGG...GCCCCGGGGCGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR TCA 72 bp | CCAGCCACTCCTGGCTTGTGCTGGTGGCTGCTGGCATaGTTCAGAGCAGAGCATACTCAGAGAGACAGCTCC | + |
Preference number: 3 (lower is better) Translates to: PATPGLCWWLLA*FRAEHTQRDSS Trigger: GGAGCTGTCTCTCTGAGTATGCTCTGCTCTGAATCATGCCAGCAGCCACCAGCACAAGCCAGGAGTGGCTGG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR CCA 72 bp | TGGAGGCCTTGGGTATGGGGTTGGAGATGGGTTTGCTaGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCG | + |
Preference number: 3 (lower is better) Translates to: WRPWVWGWRWVC*TWSTVFQLQLA Trigger: CGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR TCA 72 bp | GTTCTGCCTACATTGGTGTTCAGTAGAGGGCATTGCTaGAGAGGGCTCAACCTCCTGAGGCAGCTAGCAGCC | + |
Preference number: 3 (lower is better) Translates to: VLPTLVFSRGHC*RGLNLLRQLAA Trigger: GGCTGCTAGCTGCCTCAGGAGGTTGAGCCCTCTTCAGCAATGCCCTCTACTGAACACCAATGTAGGCAGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR TCA 72 bp | TCTTGCTCACGGCTAGTTGGCATTCAGGTGGGCTCTTaGCTGCAGAGCATGCAGGCAGAACAGCTGTGGTTC | + |
Preference number: 3 (lower is better) Translates to: SCSRLVGIQVGS*LQSMQAEQLWF Trigger: GAACCACAGCTGTTCTGCCTGCATGCTCTGCAGTCAAGAGCCCACCTGAATGCCAACTAGCCGTGAGCAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR GCA 72 bp | ACATGGAGGCCTTGGGTATGGGGTTGGAGATGGGTTTaGTGGACTTGGTCCACAGTGTTCCAGCTCCAGCTA | + |
Preference number: 3 (lower is better) Translates to: TWRPWVWGWRWV*WTWSTVFQLQL Trigger: TAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR GCA 72 bp | CTTCCCAAGACGCCTCTAGAGGACCAAGAGGACAGGTaGTGTGCAGAGCAACTCTACTCTGAGACTTCTTGC | + |
Preference number: 3 (lower is better) Translates to: LPKTPLEDQEDR*CAEQLYSETSC Trigger: GCAAGAAGTCTCAGAGTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTCCTCTAGAGGCGTCTTGGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR CCA 72 bp | AAAGGAACATGGAGGCCTTGGGTATGGGGTTGGAGATaGGTTTGCTGGACTTGGTCCACAGTGTTCCAGCTC | + |
Preference number: 3 (lower is better) Translates to: KGTWRPWVWGWR*VCWTWSTVFQL Trigger: GAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGTTCCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR TCA 72 bp | CCAAGAGGACAGGTGCTGTGCAGAGCAACTCTACTCTaGGACTTCTTGCTCACGGCTAGTTGGCATTCAGGT | + |
Preference number: 3 (lower is better) Translates to: PRGQVLCRATLL*DFLLTASWHSG Trigger: ACCTGAATGCCAACTAGCCGTGAGCAAGAAGTCTCAGAGTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR CCA 72 bp | AGCATGCAGGCAGAACAGCTGTGGTTCTGCCTACATTaGTGTTCAGTAGAGGGCATTGCTGAAGAGGGCTCA | + |
Preference number: 3 (lower is better) Translates to: SMQAEQLWFCLH*CSVEGIAEEGS Trigger: TGAGCCCTCTTCAGCAATGCCCTCTACTGAACACCAATGTAGGCAGAACCACAGCTGTTCTGCCTGCATGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR GCA 72 bp | AGACAGCTCCGGTTTGGTCCCTCTGTATCTTCTCTCTaGACTTGTCTCCTCAACTCAGCTCAACTCAGAGCA | + |
Preference number: 3 (lower is better) Translates to: RQLRFGPSVSSL*TCLLNSAQLRA Trigger: TGCTCTGAGTTGAGCTGAGTTGAGGAGACAAGTGCAGAGAGAAGATACAGAGGGACCAAACCGGAGCTGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR CCA 72 bp | TCAGAGCAGAGCATACTCAGAGAGACAGCTCCGGTTTaGTCCCTCTGTATCTTCTCTCTGCACTTGTCTCCT | + |
Preference number: 3 (lower is better) Translates to: SEQSILRETAPV*SLCIFSLHLSP Trigger: AGGAGACAAGTGCAGAGAGAAGATACAGAGGGACCAAACCGGAGCTGTCTCTCTGAGTATGCTCTGCTCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR TCA 72 bp | AAGGAATTTACTTTAGGGGAACAGGAAGGCTTGACTTaGTCTTTGGCTCAAGTCAAAGATTGTTACATAAAC | + |
Preference number: 3 (lower is better) Translates to: KEFTLGEQEGLT*SLAQVKDCYIN Trigger: GTTTATGTAACAATCTTTGACTTGAGCCAAAGATCAAGTCAAGCCTTCCTGTTCCCCTAAAGTAAATTCCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR CAA 72 bp | GCCTTGGGTATGGGGTTGGAGATGGGTTTGCTGGACTaGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCG | + |
Preference number: 4 (lower is better) Translates to: ALGMGLEMGLLD*VHSVPAPASAS Trigger: CGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS-3UTR CCA 90 bp | CACTTGTCTCCTCAACTCAGCTCAACTCAGAGCAGACCGCCCCTTTCTGCTTCCGGGAAGAAGGAGCTGTaGGAGGCATGGGCGTTGAAT | + |
Preference number: 4 (lower is better) Translates to: HLSPQLSSTQSRPPLSASGKKEL*EAWALN Trigger: ATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCC...GGAAGCAGAAAGGGGCGGTCTGCTCTGAGTTGAGCTGAGTTGAGGAGACAAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR CAA 72 bp | AACATGGAGGCCTTGGGTATGGGGTTGGAGATGGGTTaGCTGGACTTGGTCCACAGTGTTCCAGCTCCAGCT | + |
Preference number: 4 (lower is better) Translates to: NMEALGMGLEMG*LDLVHSVPAPA Trigger: AGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS-3UTR CCA 90 bp | CAAGACGCCTCTAGAGGACCAAGAGGACAGGTGCTGTGCAGAGCAACTCTACTCGAGCTGTGGGAGGCATaGGCGTTGAATAACAGGCTT | + |
Preference number: 4 (lower is better) Translates to: QDASRGPRGQVLCRATLLELWEA*ALNNRL Trigger: AAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTC...GAGTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTCCTCTAGAGGCGTCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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3UTR CAA 72 bp | TTCAGAGCAGAGCATACTCAGAGAGACAGCTCCGGTTaGGTCCCTCTGTATCTTCTCTCTGCACTTGTCTCC | + |
Preference number: 4 (lower is better) Translates to: FRAEHTQRDSSG*VPLYLLSALVS Trigger: GGAGACAAGTGCAGAGAGAAGATACAGAGGGACCAAACCGGAGCTGTCTCTCTGAGTATGCTCTGCTCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS-3UTR CAA 90 bp | TGGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCGCCCCGGGGCTCTTCCTCTTGCTCAGCCTTaGCAGGTGTGGGAAGCGGCG | + |
Preference number: 5 (lower is better) Translates to: WTWSTVFQLQLARRPGALPLAQP*QVWEAA Trigger: CGCCGCTTCCCACACCTGCAAAGGCTGAGCAAGAGG...AAGAGCCCCGGGGCGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS CCA 90 bp | CGATTCTTCCTGAACTCGCTGTCTCTTGGGAGCCCGCCTGGGCACTaGCTTCTCCTCTTGCTCAGCCTTTGCAGGTGTGGGAAGCGGCGC | + |
Preference number: 5 (lower is better) Translates to: RFFLNSLSLGSPPGH*LLLLLSLCRCGKRR Trigger: GCGCCGCTTCCCACACCTGCAAAGGCTGAGCAAGAGGAGAAGCCAGTGCCCAGGCGGGCTCCCAAGAGACAGCGAGTTCAGGAAGAATCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS CCA 90 bp | GCCCTTTGTAGAGGACGTGGTAGTATCCGGGGGAAGAAGGAGCTGTaGGAGGCATGGGCGTTGAATAACAGGCTTCACAGGGGACAGAGG | + |
Preference number: 5 (lower is better) Translates to: ALCRGRGSIRGKKEL*EAWALNNRLHRGQR Trigger: CCTCTGTCCCCTGTGAAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCCCCGGATACTACCACGTCCTCTACAAAGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS CCA 90 bp | CTTGATCCGATTCTTCCTGAACTCGCTGTCTCTTGGGAGCCCGCCTaGGCACTGGCTTCTCCTCTTGCTCAGCCTTTGCAGGTGTGGGAA | + |
Preference number: 5 (lower is better) Translates to: LDPILPELAVSWEPA*ALASPLAQPLQVWE Trigger: TTCCCACACCTGCAAAGGCTGAGCAAGAGGAGAAGCCAGTGCCCAGGCGGGCTCCCAAGAGACAGCGAGTTCAGGAAGAATCGGATCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS TCA 90 bp | GTGGTAGTATCCGGGGGAAGAAGGAGCTGTGGGAGGCATGGGCGTTaGATAACAGGCTTCACAGGGGACAGAGGACAGGTTAGAATTAAT | + |
Preference number: 5 (lower is better) Translates to: VVVSGGRRSCGRHGR*ITGFTGDRGQVRIN Trigger: ATTAATTCTAACCTGTCCTCTGTCCCCTGTGAAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCCCCGGATACTACCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS TCA 72 bp | TCCGGGGGAAGAAGGAGCTGTGGGAGGCATGGGCGTTaGATAACAGGCTTCACAGGGGACAGAGGACAGGTT | + |
Preference number: 6 (lower is better) Translates to: SGGRRSCGRHGR*ITGFTGDRGQV Trigger: AACCTGTCCTCTGTCCCCTGTGAAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCCCCGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS CCA 72 bp | GGTAGTATCCGGGGGAAGAAGGAGCTGTGGGAGGCATaGGCGTTGAATAACAGGCTTCACAGGGGACAGAGG | + |
Preference number: 6 (lower is better) Translates to: GSIRGKKELWEA*ALNNRLHRGQR Trigger: CCTCTGTCCCCTGTGAAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCCCCGGATACTACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS CAA 90 bp | GCCTCCAATCAGGCAGTATGTCTCTCCATGCCAGGCCATCTGGGCTaGTGCATGCCCTTTGTAGAGGACGTGGTAGTATCCGGGGGAAGA | + |
Preference number: 6 (lower is better) Translates to: ASNQAVCLSMPGHLG*CMPFVEDVVVSGGR Trigger: TCTTCCCCCGGATACTACCACGTCCTCTACAAAGGGCATGCACAAGCCCAGATGGCCTGGCATGGAGAGACATACTGCCTGATTGGAGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS GCA 72 bp | GCAGTATGTCTCTCCATGCCAGGCCATCTGGGCTTGTaGATGCCCTTTGTAGAGGACGTGGTAGTATCCGGG | + |
Preference number: 6 (lower is better) Translates to: AVCLSMPGHLGL*MPFVEDVVVSG Trigger: CCCGGATACTACCACGTCCTCTACAAAGGGCATGCACAAGCCCAGATGGCCTGGCATGGAGAGACATACTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS CCA 72 bp | AGAGGACGTGGTAGTATCCGGGGGAAGAAGGAGCTGTaGGAGGCATGGGCGTTGAATAACAGGCTTCACAGG | + |
Preference number: 6 (lower is better) Translates to: RGRGSIRGKKEL*EAWALNNRLHR Trigger: CCTGTGAAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCCCCGGATACTACCACGTCCTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |
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CDS CAA 72 bp | CAGGCAGTATGTCTCTCCATGCCAGGCCATCTGGGCTaGTGCATGCCCTTTGTAGAGGACGTGGTAGTATCC | + |
Preference number: 6 (lower is better) Translates to: QAVCLSMPGHLG*CMPFVEDVVVS Trigger: GGATACTACCACGTCCTCTACAAAGGGCATGCACAAGCCCAGATGGCCTGGCATGGAGAGACATACTGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227778.2 |