RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DPEP2NB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000115768

Ensembl transcript IDs: ENSMUST00000227778.2

Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAAGGAACATGGAGGCCTTGGGTATGGGGTTGGAGATGGGTTTGCTaGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCGCCCC +
Preference number: 1 (lower is better)
Translates to: KGTWRPWVWGWRWVC*TWSTVFQLQLARRP
Trigger: GGGGCGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGTTCCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR GCA 90 bp GTTAAAGGAACATGGAGGCCTTGGGTATGGGGTTGGAGATGGGTTTaGTGGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCGC +
Preference number: 1 (lower is better)
Translates to: VKGTWRPWVWGWRWV*WTWSTVFQLQLARR
Trigger: GCGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGTTCCTTTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR GCA 90 bp CCCTTTCTGCTTCCCAAGACGCCTCTAGAGGACCAAGAGGACAGGTaGTGTGCAGAGCAACTCTACTCTGAGACTTCTTGCTCACGGCTA +
Preference number: 1 (lower is better)
Translates to: PFLLPKTPLEDQEDR*CAEQLYSETSCSRL
Trigger: TAGCCGTGAGCAAGAAGTCTCAGAGTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTCCTCTAGAGGCGTCTTGGGAAGCAGAAAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR CCA 90 bp GCTGAAGTTAAAGGAACATGGAGGCCTTGGGTATGGGGTTGGAGATaGGTTTGCTGGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCG +
Preference number: 1 (lower is better)
Translates to: AEVKGTWRPWVWGWR*VCWTWSTVFQLQLA
Trigger: CGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGTTCCTTTAACTTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR TCA 90 bp ACAGCTGTGGTTCTGCCTACATTGGTGTTCAGTAGAGGGCATTGCTaGAGAGGGCTCAACCTCCTGAGGCAGCTAGCAGCCTTTCTTCTC +
Preference number: 1 (lower is better)
Translates to: TAVVLPTLVFSRGHC*RGLNLLRQLAAFLL
Trigger: GAGAAGAAAGGCTGCTAGCTGCCTCAGGAGGTTGAGCCCTCTTCAGCAATGCCCTCTACTGAACACCAATGTAGGCAGAACCACAGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR TCA 90 bp TCTAGAGGACCAAGAGGACAGGTGCTGTGCAGAGCAACTCTACTCTaGGACTTCTTGCTCACGGCTAGTTGGCATTCAGGTGGGCTCTTG +
Preference number: 1 (lower is better)
Translates to: SRGPRGQVLCRATLL*DFLLTASWHSGGLL
Trigger: CAAGAGCCCACCTGAATGCCAACTAGCCGTGAGCAAGAAGTCTCAGAGTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTCCTCTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR-3UTR GCA 90 bp TGCTGGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCGCCCCGGGGCTGACCAAGAGGACAGGTaGTGTGCAGAGCAACTCTAC +
Preference number: 2 (lower is better)
Translates to: CWTWSTVFQLQLARRPGADQEDR*CAEQLY
Trigger: GTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTC...AGCCCCGGGGCGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR-3UTR GCA 90 bp GCTTGTGCTGGTGGCTGCTGGCATGATTCAGAGCAGAGCATACTCAGAGAGACAAGGTGGGCTCTTGACTaGAGAGCATGCAGGCAGAAC +
Preference number: 2 (lower is better)
Translates to: ACAGGCWHDSEQSILRETRWALD*RACRQN
Trigger: GTTCTGCCTGCATGCTCTGCAGTCAAGAGCCCACCT...TGTCTCTCTGAGTATGCTCTGCTCTGAATCATGCCAGCAGCCACCAGCACAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR CAA 90 bp AGAGAGACAGCTCCGGTTTGGTCCCTCTGTATCTTCTCTCTGCACTaGTCTCCTCAACTCAGCTCAACTCAGAGCAGACCGCCCCTTTCT +
Preference number: 2 (lower is better)
Translates to: RETAPVWSLCIFSLH*SPQLSSTQSRPPLS
Trigger: AGAAAGGGGCGGTCTGCTCTGAGTTGAGCTGAGTTGAGGAGACAAGTGCAGAGAGAAGATACAGAGGGACCAAACCGGAGCTGTCTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR-3UTR TCA 90 bp CACTTGTCTCCTCAACTCAGCTCAACTCAGAGCAGACCGCCCCTTTCTGCTTCCAGAGCAACTCTACTCTaGGACTTCTTGCTCACGGCT +
Preference number: 2 (lower is better)
Translates to: HLSPQLSSTQSRPPLSASRATLL*DFLLTA
Trigger: AGCCGTGAGCAAGAAGTCTCAGAGTAGAGTTGCTCT...GGAAGCAGAAAGGGGCGGTCTGCTCTGAGTTGAGCTGAGTTGAGGAGACAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR-3UTR CCA 90 bp CCCAAGACGCCTCTAGAGGACCAAGAGGACAGGTGCTGTGCAGAGCAACTCTACTGGTTCTGCCTACATTaGTGTTCAGTAGAGGGCATT +
Preference number: 2 (lower is better)
Translates to: PKTPLEDQEDRCCAEQLYWFCLH*CSVEGI
Trigger: AATGCCCTCTACTGAACACCAATGTAGGCAGAACCA...GTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTCCTCTAGAGGCGTCTTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR-3UTR TCA 90 bp TCCTTTATTAACTACTGCTCATTTCTTCCAGGTTTAGGAAGTCCAGCCACTCCTATTCAGGTGGGCTCTTaGCTGCAGAGCATGCAGGCA +
Preference number: 2 (lower is better)
Translates to: SFINYCSFLPGLGSPATPIQVGS*LQSMQA
Trigger: TGCCTGCATGCTCTGCAGTCAAGAGCCCACCTGAAT...AGGAGTGGCTGGACTTCCTAAACCTGGAAGAAATGAGCAGTAGTTAATAAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR-3UTR CAA 90 bp TTGCTGGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCGCCCCGGGGCCCAGCCACTCCTGGCTaGTGCTGGTGGCTGCTGGCA +
Preference number: 3 (lower is better)
Translates to: LLDLVHSVPAPASASPRGPATPG*CWWLLA
Trigger: TGCCAGCAGCCACCAGCACAAGCCAGGAGTGGCTGG...GCCCCGGGGCGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR TCA 72 bp CCAGCCACTCCTGGCTTGTGCTGGTGGCTGCTGGCATaGTTCAGAGCAGAGCATACTCAGAGAGACAGCTCC +
Preference number: 3 (lower is better)
Translates to: PATPGLCWWLLA*FRAEHTQRDSS
Trigger: GGAGCTGTCTCTCTGAGTATGCTCTGCTCTGAATCATGCCAGCAGCCACCAGCACAAGCCAGGAGTGGCTGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR CCA 72 bp TGGAGGCCTTGGGTATGGGGTTGGAGATGGGTTTGCTaGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCG +
Preference number: 3 (lower is better)
Translates to: WRPWVWGWRWVC*TWSTVFQLQLA
Trigger: CGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR TCA 72 bp GTTCTGCCTACATTGGTGTTCAGTAGAGGGCATTGCTaGAGAGGGCTCAACCTCCTGAGGCAGCTAGCAGCC +
Preference number: 3 (lower is better)
Translates to: VLPTLVFSRGHC*RGLNLLRQLAA
Trigger: GGCTGCTAGCTGCCTCAGGAGGTTGAGCCCTCTTCAGCAATGCCCTCTACTGAACACCAATGTAGGCAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR TCA 72 bp TCTTGCTCACGGCTAGTTGGCATTCAGGTGGGCTCTTaGCTGCAGAGCATGCAGGCAGAACAGCTGTGGTTC +
Preference number: 3 (lower is better)
Translates to: SCSRLVGIQVGS*LQSMQAEQLWF
Trigger: GAACCACAGCTGTTCTGCCTGCATGCTCTGCAGTCAAGAGCCCACCTGAATGCCAACTAGCCGTGAGCAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR GCA 72 bp ACATGGAGGCCTTGGGTATGGGGTTGGAGATGGGTTTaGTGGACTTGGTCCACAGTGTTCCAGCTCCAGCTA +
Preference number: 3 (lower is better)
Translates to: TWRPWVWGWRWV*WTWSTVFQLQL
Trigger: TAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR GCA 72 bp CTTCCCAAGACGCCTCTAGAGGACCAAGAGGACAGGTaGTGTGCAGAGCAACTCTACTCTGAGACTTCTTGC +
Preference number: 3 (lower is better)
Translates to: LPKTPLEDQEDR*CAEQLYSETSC
Trigger: GCAAGAAGTCTCAGAGTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTCCTCTAGAGGCGTCTTGGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR CCA 72 bp AAAGGAACATGGAGGCCTTGGGTATGGGGTTGGAGATaGGTTTGCTGGACTTGGTCCACAGTGTTCCAGCTC +
Preference number: 3 (lower is better)
Translates to: KGTWRPWVWGWR*VCWTWSTVFQL
Trigger: GAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGTTCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR TCA 72 bp CCAAGAGGACAGGTGCTGTGCAGAGCAACTCTACTCTaGGACTTCTTGCTCACGGCTAGTTGGCATTCAGGT +
Preference number: 3 (lower is better)
Translates to: PRGQVLCRATLL*DFLLTASWHSG
Trigger: ACCTGAATGCCAACTAGCCGTGAGCAAGAAGTCTCAGAGTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR CCA 72 bp AGCATGCAGGCAGAACAGCTGTGGTTCTGCCTACATTaGTGTTCAGTAGAGGGCATTGCTGAAGAGGGCTCA +
Preference number: 3 (lower is better)
Translates to: SMQAEQLWFCLH*CSVEGIAEEGS
Trigger: TGAGCCCTCTTCAGCAATGCCCTCTACTGAACACCAATGTAGGCAGAACCACAGCTGTTCTGCCTGCATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR GCA 72 bp AGACAGCTCCGGTTTGGTCCCTCTGTATCTTCTCTCTaGACTTGTCTCCTCAACTCAGCTCAACTCAGAGCA +
Preference number: 3 (lower is better)
Translates to: RQLRFGPSVSSL*TCLLNSAQLRA
Trigger: TGCTCTGAGTTGAGCTGAGTTGAGGAGACAAGTGCAGAGAGAAGATACAGAGGGACCAAACCGGAGCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR CCA 72 bp TCAGAGCAGAGCATACTCAGAGAGACAGCTCCGGTTTaGTCCCTCTGTATCTTCTCTCTGCACTTGTCTCCT +
Preference number: 3 (lower is better)
Translates to: SEQSILRETAPV*SLCIFSLHLSP
Trigger: AGGAGACAAGTGCAGAGAGAAGATACAGAGGGACCAAACCGGAGCTGTCTCTCTGAGTATGCTCTGCTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR TCA 72 bp AAGGAATTTACTTTAGGGGAACAGGAAGGCTTGACTTaGTCTTTGGCTCAAGTCAAAGATTGTTACATAAAC +
Preference number: 3 (lower is better)
Translates to: KEFTLGEQEGLT*SLAQVKDCYIN
Trigger: GTTTATGTAACAATCTTTGACTTGAGCCAAAGATCAAGTCAAGCCTTCCTGTTCCCCTAAAGTAAATTCCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR CAA 72 bp GCCTTGGGTATGGGGTTGGAGATGGGTTTGCTGGACTaGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCG +
Preference number: 4 (lower is better)
Translates to: ALGMGLEMGLLD*VHSVPAPASAS
Trigger: CGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS-3UTR CCA 90 bp CACTTGTCTCCTCAACTCAGCTCAACTCAGAGCAGACCGCCCCTTTCTGCTTCCGGGAAGAAGGAGCTGTaGGAGGCATGGGCGTTGAAT +
Preference number: 4 (lower is better)
Translates to: HLSPQLSSTQSRPPLSASGKKEL*EAWALN
Trigger: ATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCC...GGAAGCAGAAAGGGGCGGTCTGCTCTGAGTTGAGCTGAGTTGAGGAGACAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR CAA 72 bp AACATGGAGGCCTTGGGTATGGGGTTGGAGATGGGTTaGCTGGACTTGGTCCACAGTGTTCCAGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: NMEALGMGLEMG*LDLVHSVPAPA
Trigger: AGCTGGAGCTGGAACACTGTGGACCAAGTCCAGCAAACCCATCTCCAACCCCATACCCAAGGCCTCCATGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS-3UTR CCA 90 bp CAAGACGCCTCTAGAGGACCAAGAGGACAGGTGCTGTGCAGAGCAACTCTACTCGAGCTGTGGGAGGCATaGGCGTTGAATAACAGGCTT +
Preference number: 4 (lower is better)
Translates to: QDASRGPRGQVLCRATLLELWEA*ALNNRL
Trigger: AAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTC...GAGTAGAGTTGCTCTGCACAGCACCTGTCCTCTTGGTCCTCTAGAGGCGTCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
3UTR CAA 72 bp TTCAGAGCAGAGCATACTCAGAGAGACAGCTCCGGTTaGGTCCCTCTGTATCTTCTCTCTGCACTTGTCTCC +
Preference number: 4 (lower is better)
Translates to: FRAEHTQRDSSG*VPLYLLSALVS
Trigger: GGAGACAAGTGCAGAGAGAAGATACAGAGGGACCAAACCGGAGCTGTCTCTCTGAGTATGCTCTGCTCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS-3UTR CAA 90 bp TGGACTTGGTCCACAGTGTTCCAGCTCCAGCTAGCGCGTCGCCCCGGGGCTCTTCCTCTTGCTCAGCCTTaGCAGGTGTGGGAAGCGGCG +
Preference number: 5 (lower is better)
Translates to: WTWSTVFQLQLARRPGALPLAQP*QVWEAA
Trigger: CGCCGCTTCCCACACCTGCAAAGGCTGAGCAAGAGG...AAGAGCCCCGGGGCGACGCGCTAGCTGGAGCTGGAACACTGTGGACCAAGTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS CCA 90 bp CGATTCTTCCTGAACTCGCTGTCTCTTGGGAGCCCGCCTGGGCACTaGCTTCTCCTCTTGCTCAGCCTTTGCAGGTGTGGGAAGCGGCGC +
Preference number: 5 (lower is better)
Translates to: RFFLNSLSLGSPPGH*LLLLLSLCRCGKRR
Trigger: GCGCCGCTTCCCACACCTGCAAAGGCTGAGCAAGAGGAGAAGCCAGTGCCCAGGCGGGCTCCCAAGAGACAGCGAGTTCAGGAAGAATCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS CCA 90 bp GCCCTTTGTAGAGGACGTGGTAGTATCCGGGGGAAGAAGGAGCTGTaGGAGGCATGGGCGTTGAATAACAGGCTTCACAGGGGACAGAGG +
Preference number: 5 (lower is better)
Translates to: ALCRGRGSIRGKKEL*EAWALNNRLHRGQR
Trigger: CCTCTGTCCCCTGTGAAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCCCCGGATACTACCACGTCCTCTACAAAGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS CCA 90 bp CTTGATCCGATTCTTCCTGAACTCGCTGTCTCTTGGGAGCCCGCCTaGGCACTGGCTTCTCCTCTTGCTCAGCCTTTGCAGGTGTGGGAA +
Preference number: 5 (lower is better)
Translates to: LDPILPELAVSWEPA*ALASPLAQPLQVWE
Trigger: TTCCCACACCTGCAAAGGCTGAGCAAGAGGAGAAGCCAGTGCCCAGGCGGGCTCCCAAGAGACAGCGAGTTCAGGAAGAATCGGATCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS TCA 90 bp GTGGTAGTATCCGGGGGAAGAAGGAGCTGTGGGAGGCATGGGCGTTaGATAACAGGCTTCACAGGGGACAGAGGACAGGTTAGAATTAAT +
Preference number: 5 (lower is better)
Translates to: VVVSGGRRSCGRHGR*ITGFTGDRGQVRIN
Trigger: ATTAATTCTAACCTGTCCTCTGTCCCCTGTGAAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCCCCGGATACTACCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS TCA 72 bp TCCGGGGGAAGAAGGAGCTGTGGGAGGCATGGGCGTTaGATAACAGGCTTCACAGGGGACAGAGGACAGGTT +
Preference number: 6 (lower is better)
Translates to: SGGRRSCGRHGR*ITGFTGDRGQV
Trigger: AACCTGTCCTCTGTCCCCTGTGAAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCCCCGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS CCA 72 bp GGTAGTATCCGGGGGAAGAAGGAGCTGTGGGAGGCATaGGCGTTGAATAACAGGCTTCACAGGGGACAGAGG +
Preference number: 6 (lower is better)
Translates to: GSIRGKKELWEA*ALNNRLHRGQR
Trigger: CCTCTGTCCCCTGTGAAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCCCCGGATACTACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS CAA 90 bp GCCTCCAATCAGGCAGTATGTCTCTCCATGCCAGGCCATCTGGGCTaGTGCATGCCCTTTGTAGAGGACGTGGTAGTATCCGGGGGAAGA +
Preference number: 6 (lower is better)
Translates to: ASNQAVCLSMPGHLG*CMPFVEDVVVSGGR
Trigger: TCTTCCCCCGGATACTACCACGTCCTCTACAAAGGGCATGCACAAGCCCAGATGGCCTGGCATGGAGAGACATACTGCCTGATTGGAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS GCA 72 bp GCAGTATGTCTCTCCATGCCAGGCCATCTGGGCTTGTaGATGCCCTTTGTAGAGGACGTGGTAGTATCCGGG +
Preference number: 6 (lower is better)
Translates to: AVCLSMPGHLGL*MPFVEDVVVSG
Trigger: CCCGGATACTACCACGTCCTCTACAAAGGGCATGCACAAGCCCAGATGGCCTGGCATGGAGAGACATACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS CCA 72 bp AGAGGACGTGGTAGTATCCGGGGGAAGAAGGAGCTGTaGGAGGCATGGGCGTTGAATAACAGGCTTCACAGG +
Preference number: 6 (lower is better)
Translates to: RGRGSIRGKKEL*EAWALNNRLHR
Trigger: CCTGTGAAGCCTGTTATTCAACGCCCATGCCTCCCACAGCTCCTTCTTCCCCCGGATACTACCACGTCCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2
CDS CAA 72 bp CAGGCAGTATGTCTCTCCATGCCAGGCCATCTGGGCTaGTGCATGCCCTTTGTAGAGGACGTGGTAGTATCC +
Preference number: 6 (lower is better)
Translates to: QAVCLSMPGHLG*CMPFVEDVVVS
Trigger: GGATACTACCACGTCCTCTACAAAGGGCATGCACAAGCCCAGATGGCCTGGCATGGAGAGACATACTGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227778.2