Pregenerated sensors for DPCD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041035Ensembl transcript IDs: ENSMUST00000047057.9, ENSMUST00000235805.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | CCCAGGCTCCCAGCTCCTGAGGGCACTGGCTCTCCCACTTCAAGCTaGCACTGGCCCAAGGCTCCCAGGGCATTTTTCACACGCCACTTC | + |
Preference number: 5 (lower is better) Translates to: PRLPAPEGTGSPTSS*HWPKAPRAFFTRHF Trigger: GAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CCA 90 bp | CTCCCAGCTCCTGAGGGCACTGGCTCTCCCACTTCAAGCTGCCACTaGCCCAAGGCTCCCAGGGCATTTTTCACACGCCACTTCCTCACA | + |
Preference number: 5 (lower is better) Translates to: LPAPEGTGSPTSSCH*PKAPRAFFTRHFLT Trigger: TGTGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS GCA 90 bp | ATGGGGTGCAGAATTAGCCTCTTGGTACAGCCCATCCTGCAGCAGTaGCGTCTTCTCGGCCGACCGCAAAACCTCCAACCAGCTAGTCAC | + |
Preference number: 5 (lower is better) Translates to: MGCRISLLVQPILQQ*RLLGRPQNLQPASH Trigger: GTGACTAGCTGGTTGGAGGTTTTGCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235805.2 |
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CDS GCA 90 bp | GTCTGGGAACAAATAGTGCACCATCCTCTTCCCATCCTGCAGCAGTaGCGTCTTCTCGGCCGACCGCAAAACCTCCAACCAGCTAGTCAC | + |
Preference number: 5 (lower is better) Translates to: VWEQIVHHPLPILQQ*RLLGRPQNLQPASH Trigger: GTGACTAGCTGGTTGGAGGTTTTGCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGAAGAGGATGGTGCACTATTTGTTCCCAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CCA 90 bp | GTTTCAGTTTCCTCGTCAGTCAAATGGGGTGCAGAATTAGCCTCTTaGTACAGCCCATCCTGCAGCAGTGCCGTCTTCTCGGCCGACCGC | + |
Preference number: 5 (lower is better) Translates to: VSVSSSVKWGAELAS*YSPSCSSAVFSADR Trigger: GCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCATTTGACTGACGAGGAAACTGAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235805.2 |
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CDS GCA 90 bp | TCTAAAACCTTCCTGGGTTTCAGTTTCCTCGTCAGTCAAATGGGGTaGAGAATTAGCCTCTTGGTACAGCCCATCCTGCAGCAGTGCCGT | + |
Preference number: 5 (lower is better) Translates to: SKTFLGFSFLVSQMG*RISLLVQPILQQCR Trigger: ACGGCACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCATTTGACTGACGAGGAAACTGAAACCCAGGAAGGTTTTAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235805.2 |
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CDS CCA 90 bp | TTCACTGGTCTTCTCGTCATATTCTTCTGCCATTTCCTTCCCGTCTaGGAACAAATAGTGCACCATCCTCTTCCCATCCTGCAGCAGTGC | + |
Preference number: 5 (lower is better) Translates to: FTGLLVIFFCHFLPV*EQIVHHPLPILQQC Trigger: GCACTGCTGCAGGATGGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CCA 90 bp | TTTGGTCTAAAACCTTCCTGGGTTTCAGTTTCCTCGTCAGTCAAATaGGGTGCAGAATTAGCCTCTTGGTACAGCCCATCCTGCAGCAGT | + |
Preference number: 5 (lower is better) Translates to: FGLKPSWVSVSSSVK*GAELASWYSPSCSS Trigger: ACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCATTTGACTGACGAGGAAACTGAAACCCAGGAAGGTTTTAGACCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235805.2 |
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CDS TCA 90 bp | CATTTCCTTCCCGTCTGGGAACAAATAGTGCACCATCCTCTTCCCTaGTTATCTGCAAAACCTGGGTTTGGTCTAAAACCTTCCTGGGTT | + |
Preference number: 5 (lower is better) Translates to: HFLPVWEQIVHHPLP*LSAKPGFGLKPSWV Trigger: AACCCAGGAAGGTTTTAGACCAAACCCAGGTTTTGCAGATAATCAGGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235805.2 |
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CDS CCA 72 bp | CCTGAGGGCACTGGCTCTCCCACTTCAAGCTGCCACTaGCCCAAGGCTCCCAGGGCATTTTTCACACGCCAC | + |
Preference number: 6 (lower is better) Translates to: PEGTGSPTSSCH*PKAPRAFFTRH Trigger: GTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CAA 90 bp | GGTTTCAGTTTCCTCGTCAGTCAAATGGGGTGCAGAATTAGCCTCTaGGTACAGCCCATCCTGCAGCAGTGCCGTCTTCTCGGCCGACCG | + |
Preference number: 6 (lower is better) Translates to: GFSFLVSQMGCRISL*VQPILQQCRLLGRP Trigger: CGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCATTTGACTGACGAGGAAACTGAAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235805.2 |
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CDS GCA 72 bp | CAAATAGTGCACCATCCTCTTCCCATCCTGCAGCAGTaGCGTCTTCTCGGCCGACCGCAAAACCTCCAACCA | + |
Preference number: 6 (lower is better) Translates to: QIVHHPLPILQQ*RLLGRPQNLQP Trigger: TGGTTGGAGGTTTTGCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGAAGAGGATGGTGCACTATTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS GCA 72 bp | AGAATTAGCCTCTTGGTACAGCCCATCCTGCAGCAGTaGCGTCTTCTCGGCCGACCGCAAAACCTCCAACCA | + |
Preference number: 6 (lower is better) Translates to: RISLLVQPILQQ*RLLGRPQNLQP Trigger: TGGTTGGAGGTTTTGCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235805.2 |
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CDS CAA 90 bp | GTTTTGGTGTCCTTGCGCATGAAGATGGGATTGGCATTACTTTCTTaGATGAGCTCGGATCCCAGGCTCCCAGCTCCTGAGGGCACTGGC | + |
Preference number: 6 (lower is better) Translates to: VLVSLRMKMGLALLS*MSSDPRLPAPEGTG Trigger: GCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAATCCCATCTTCATGCGCAAGGACACCAAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CAA 72 bp | TCCTTGCGCATGAAGATGGGATTGGCATTACTTTCTTaGATGAGCTCGGATCCCAGGCTCCCAGCTCCTGAG | + |
Preference number: 6 (lower is better) Translates to: SLRMKMGLALLS*MSSDPRLPAPE Trigger: CTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAATCCCATCTTCATGCGCAAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CAA 90 bp | CGCCACTGGAAACTTGTTTTGGTGTCCTTGCGCATGAAGATGGGATaGGCATTACTTTCTTTGATGAGCTCGGATCCCAGGCTCCCAGCT | + |
Preference number: 6 (lower is better) Translates to: RHWKLVLVSLRMKMG*ALLSLMSSDPRLPA Trigger: AGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAATCCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CCA 72 bp | TGCGCAAAGCTCAACGCAGAATCCTCTAGAGGAAGCTaGTGTCTGTCTAGGTCAGGGATGGAGAACTTCTTG | + |
Preference number: 6 (lower is better) Translates to: CAKLNAESSRGS*CLSRSGMENFL Trigger: CAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CCA 72 bp | CCTTTGGCTTCTGATAAGAGATTATCAGGGTGCAGTTaGCGTGCGCAAAGCTCAACGCAGAATCCTCTAGAG | + |
Preference number: 6 (lower is better) Translates to: PLASDKRLSGCS*RAQSSTQNPLE Trigger: CTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACTGCACCCTGATAATCTCTTATCAGAAGCCAAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CCA 72 bp | AAACCTTCCTGGGTTTCAGTTTCCTCGTCAGTCAAATaGGGTGCAGAATTAGCCTCTTGGTACAGCCCATCC | + |
Preference number: 6 (lower is better) Translates to: KPSWVSVSSSVK*GAELASWYSPS Trigger: GGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCATTTGACTGACGAGGAAACTGAAACCCAGGAAGGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235805.2 |
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CDS CCA 72 bp | CTTCTCGTCATATTCTTCTGCCATTTCCTTCCCGTCTaGGAACAAATAGTGCACCATCCTCTTCCCATCCTG | + |
Preference number: 6 (lower is better) Translates to: LLVIFFCHFLPV*EQIVHHPLPIL Trigger: CAGGATGGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS TCA 72 bp | CCCGTCTGGGAACAAATAGTGCACCATCCTCTTCCCTaGTTATCTGCAAAACCTGGGTTTGGTCTAAAACCT | + |
Preference number: 6 (lower is better) Translates to: PVWEQIVHHPLP*LSAKPGFGLKP Trigger: AGGTTTTAGACCAAACCCAGGTTTTGCAGATAATCAGGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235805.2 |
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CDS TCA 72 bp | TCTTTAACTCCTTCTGTAACTCTGACTCAGCCGCCATaGCCTCCTTTGGCTTCTGATAAGAGATTATCAGGG | + |
Preference number: 6 (lower is better) Translates to: SLTPSVTLTQPP*PPLASDKRLSG Trigger: CCCTGATAATCTCTTATCAGAAGCCAAAGGAGGTCATGGCGGCTGAGTCAGAGTTACAGAAGGAGTTAAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS GCA 72 bp | GGAACAAATAGTGCACCATCCTCTTCCCTGATTATCTaGAAAACCTGGGTTTGGTCTAAAACCTTCCTGGGT | + |
Preference number: 6 (lower is better) Translates to: GTNSAPSSSLII*KTWVWSKTFLG Trigger: ACCCAGGAAGGTTTTAGACCAAACCCAGGTTTTGCAGATAATCAGGGAAGAGGATGGTGCACTATTTGTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235805.2 |
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CDS CCA 72 bp | CCTCTAGAGGAAGCTGGTGTCTGTCTAGGTCAGGGATaGAGAACTTCTTGTAGTACTTTTTGTTTGTCGTTC | + |
Preference number: 6 (lower is better) Translates to: PLEEAGVCLGQG*RTSCSTFCLSF Trigger: GAACGACAAACAAAAAGTACTACAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CAA 72 bp | AAACTTGTTTTGGTGTCCTTGCGCATGAAGATGGGATaGGCATTACTTTCTTTGATGAGCTCGGATCCCAGG | + |
Preference number: 6 (lower is better) Translates to: KLVLVSLRMKMG*ALLSLMSSDPR Trigger: CCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAATCCCATCTTCATGCGCAAGGACACCAAAACAAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |
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CDS CAA 72 bp | TTTCGAATCCGCCACTGGAAACTTGTTTTGGTGTCCTaGCGCATGAAGATGGGATTGGCATTACTTTCTTTG | + |
Preference number: 6 (lower is better) Translates to: FRIRHWKLVLVS*RMKMGLALLSL Trigger: CAAAGAAAGTAATGCCAATCCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047057.9 |