RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DPCD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041035

Ensembl transcript IDs: ENSMUST00000047057.9, ENSMUST00000235805.2

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CCCAGGCTCCCAGCTCCTGAGGGCACTGGCTCTCCCACTTCAAGCTaGCACTGGCCCAAGGCTCCCAGGGCATTTTTCACACGCCACTTC +
Preference number: 5 (lower is better)
Translates to: PRLPAPEGTGSPTSS*HWPKAPRAFFTRHF
Trigger: GAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CCA 90 bp CTCCCAGCTCCTGAGGGCACTGGCTCTCCCACTTCAAGCTGCCACTaGCCCAAGGCTCCCAGGGCATTTTTCACACGCCACTTCCTCACA +
Preference number: 5 (lower is better)
Translates to: LPAPEGTGSPTSSCH*PKAPRAFFTRHFLT
Trigger: TGTGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS GCA 90 bp ATGGGGTGCAGAATTAGCCTCTTGGTACAGCCCATCCTGCAGCAGTaGCGTCTTCTCGGCCGACCGCAAAACCTCCAACCAGCTAGTCAC +
Preference number: 5 (lower is better)
Translates to: MGCRISLLVQPILQQ*RLLGRPQNLQPASH
Trigger: GTGACTAGCTGGTTGGAGGTTTTGCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235805.2
CDS GCA 90 bp GTCTGGGAACAAATAGTGCACCATCCTCTTCCCATCCTGCAGCAGTaGCGTCTTCTCGGCCGACCGCAAAACCTCCAACCAGCTAGTCAC +
Preference number: 5 (lower is better)
Translates to: VWEQIVHHPLPILQQ*RLLGRPQNLQPASH
Trigger: GTGACTAGCTGGTTGGAGGTTTTGCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGAAGAGGATGGTGCACTATTTGTTCCCAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CCA 90 bp GTTTCAGTTTCCTCGTCAGTCAAATGGGGTGCAGAATTAGCCTCTTaGTACAGCCCATCCTGCAGCAGTGCCGTCTTCTCGGCCGACCGC +
Preference number: 5 (lower is better)
Translates to: VSVSSSVKWGAELAS*YSPSCSSAVFSADR
Trigger: GCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCATTTGACTGACGAGGAAACTGAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235805.2
CDS GCA 90 bp TCTAAAACCTTCCTGGGTTTCAGTTTCCTCGTCAGTCAAATGGGGTaGAGAATTAGCCTCTTGGTACAGCCCATCCTGCAGCAGTGCCGT +
Preference number: 5 (lower is better)
Translates to: SKTFLGFSFLVSQMG*RISLLVQPILQQCR
Trigger: ACGGCACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCATTTGACTGACGAGGAAACTGAAACCCAGGAAGGTTTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235805.2
CDS CCA 90 bp TTCACTGGTCTTCTCGTCATATTCTTCTGCCATTTCCTTCCCGTCTaGGAACAAATAGTGCACCATCCTCTTCCCATCCTGCAGCAGTGC +
Preference number: 5 (lower is better)
Translates to: FTGLLVIFFCHFLPV*EQIVHHPLPILQQC
Trigger: GCACTGCTGCAGGATGGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CCA 90 bp TTTGGTCTAAAACCTTCCTGGGTTTCAGTTTCCTCGTCAGTCAAATaGGGTGCAGAATTAGCCTCTTGGTACAGCCCATCCTGCAGCAGT +
Preference number: 5 (lower is better)
Translates to: FGLKPSWVSVSSSVK*GAELASWYSPSCSS
Trigger: ACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCATTTGACTGACGAGGAAACTGAAACCCAGGAAGGTTTTAGACCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235805.2
CDS TCA 90 bp CATTTCCTTCCCGTCTGGGAACAAATAGTGCACCATCCTCTTCCCTaGTTATCTGCAAAACCTGGGTTTGGTCTAAAACCTTCCTGGGTT +
Preference number: 5 (lower is better)
Translates to: HFLPVWEQIVHHPLP*LSAKPGFGLKPSWV
Trigger: AACCCAGGAAGGTTTTAGACCAAACCCAGGTTTTGCAGATAATCAGGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235805.2
CDS CCA 72 bp CCTGAGGGCACTGGCTCTCCCACTTCAAGCTGCCACTaGCCCAAGGCTCCCAGGGCATTTTTCACACGCCAC +
Preference number: 6 (lower is better)
Translates to: PEGTGSPTSSCH*PKAPRAFFTRH
Trigger: GTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CAA 90 bp GGTTTCAGTTTCCTCGTCAGTCAAATGGGGTGCAGAATTAGCCTCTaGGTACAGCCCATCCTGCAGCAGTGCCGTCTTCTCGGCCGACCG +
Preference number: 6 (lower is better)
Translates to: GFSFLVSQMGCRISL*VQPILQQCRLLGRP
Trigger: CGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCATTTGACTGACGAGGAAACTGAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235805.2
CDS GCA 72 bp CAAATAGTGCACCATCCTCTTCCCATCCTGCAGCAGTaGCGTCTTCTCGGCCGACCGCAAAACCTCCAACCA +
Preference number: 6 (lower is better)
Translates to: QIVHHPLPILQQ*RLLGRPQNLQP
Trigger: TGGTTGGAGGTTTTGCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGAAGAGGATGGTGCACTATTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS GCA 72 bp AGAATTAGCCTCTTGGTACAGCCCATCCTGCAGCAGTaGCGTCTTCTCGGCCGACCGCAAAACCTCCAACCA +
Preference number: 6 (lower is better)
Translates to: RISLLVQPILQQ*RLLGRPQNLQP
Trigger: TGGTTGGAGGTTTTGCGGTCGGCCGAGAAGACGGCACTGCTGCAGGATGGGCTGTACCAAGAGGCTAATTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235805.2
CDS CAA 90 bp GTTTTGGTGTCCTTGCGCATGAAGATGGGATTGGCATTACTTTCTTaGATGAGCTCGGATCCCAGGCTCCCAGCTCCTGAGGGCACTGGC +
Preference number: 6 (lower is better)
Translates to: VLVSLRMKMGLALLS*MSSDPRLPAPEGTG
Trigger: GCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAATCCCATCTTCATGCGCAAGGACACCAAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CAA 72 bp TCCTTGCGCATGAAGATGGGATTGGCATTACTTTCTTaGATGAGCTCGGATCCCAGGCTCCCAGCTCCTGAG +
Preference number: 6 (lower is better)
Translates to: SLRMKMGLALLS*MSSDPRLPAPE
Trigger: CTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAATCCCATCTTCATGCGCAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CAA 90 bp CGCCACTGGAAACTTGTTTTGGTGTCCTTGCGCATGAAGATGGGATaGGCATTACTTTCTTTGATGAGCTCGGATCCCAGGCTCCCAGCT +
Preference number: 6 (lower is better)
Translates to: RHWKLVLVSLRMKMG*ALLSLMSSDPRLPA
Trigger: AGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAATCCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CCA 72 bp TGCGCAAAGCTCAACGCAGAATCCTCTAGAGGAAGCTaGTGTCTGTCTAGGTCAGGGATGGAGAACTTCTTG +
Preference number: 6 (lower is better)
Translates to: CAKLNAESSRGS*CLSRSGMENFL
Trigger: CAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CCA 72 bp CCTTTGGCTTCTGATAAGAGATTATCAGGGTGCAGTTaGCGTGCGCAAAGCTCAACGCAGAATCCTCTAGAG +
Preference number: 6 (lower is better)
Translates to: PLASDKRLSGCS*RAQSSTQNPLE
Trigger: CTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACTGCACCCTGATAATCTCTTATCAGAAGCCAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CCA 72 bp AAACCTTCCTGGGTTTCAGTTTCCTCGTCAGTCAAATaGGGTGCAGAATTAGCCTCTTGGTACAGCCCATCC +
Preference number: 6 (lower is better)
Translates to: KPSWVSVSSSVK*GAELASWYSPS
Trigger: GGATGGGCTGTACCAAGAGGCTAATTCTGCACCCCATTTGACTGACGAGGAAACTGAAACCCAGGAAGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235805.2
CDS CCA 72 bp CTTCTCGTCATATTCTTCTGCCATTTCCTTCCCGTCTaGGAACAAATAGTGCACCATCCTCTTCCCATCCTG +
Preference number: 6 (lower is better)
Translates to: LLVIFFCHFLPV*EQIVHHPLPIL
Trigger: CAGGATGGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS TCA 72 bp CCCGTCTGGGAACAAATAGTGCACCATCCTCTTCCCTaGTTATCTGCAAAACCTGGGTTTGGTCTAAAACCT +
Preference number: 6 (lower is better)
Translates to: PVWEQIVHHPLP*LSAKPGFGLKP
Trigger: AGGTTTTAGACCAAACCCAGGTTTTGCAGATAATCAGGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235805.2
CDS TCA 72 bp TCTTTAACTCCTTCTGTAACTCTGACTCAGCCGCCATaGCCTCCTTTGGCTTCTGATAAGAGATTATCAGGG +
Preference number: 6 (lower is better)
Translates to: SLTPSVTLTQPP*PPLASDKRLSG
Trigger: CCCTGATAATCTCTTATCAGAAGCCAAAGGAGGTCATGGCGGCTGAGTCAGAGTTACAGAAGGAGTTAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS GCA 72 bp GGAACAAATAGTGCACCATCCTCTTCCCTGATTATCTaGAAAACCTGGGTTTGGTCTAAAACCTTCCTGGGT +
Preference number: 6 (lower is better)
Translates to: GTNSAPSSSLII*KTWVWSKTFLG
Trigger: ACCCAGGAAGGTTTTAGACCAAACCCAGGTTTTGCAGATAATCAGGGAAGAGGATGGTGCACTATTTGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235805.2
CDS CCA 72 bp CCTCTAGAGGAAGCTGGTGTCTGTCTAGGTCAGGGATaGAGAACTTCTTGTAGTACTTTTTGTTTGTCGTTC +
Preference number: 6 (lower is better)
Translates to: PLEEAGVCLGQG*RTSCSTFCLSF
Trigger: GAACGACAAACAAAAAGTACTACAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CAA 72 bp AAACTTGTTTTGGTGTCCTTGCGCATGAAGATGGGATaGGCATTACTTTCTTTGATGAGCTCGGATCCCAGG +
Preference number: 6 (lower is better)
Translates to: KLVLVSLRMKMG*ALLSLMSSDPR
Trigger: CCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAATCCCATCTTCATGCGCAAGGACACCAAAACAAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9
CDS CAA 72 bp TTTCGAATCCGCCACTGGAAACTTGTTTTGGTGTCCTaGCGCATGAAGATGGGATTGGCATTACTTTCTTTG +
Preference number: 6 (lower is better)
Translates to: FRIRHWKLVLVS*RMKMGLALLSL
Trigger: CAAAGAAAGTAATGCCAATCCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047057.9