RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DOP1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022946

Ensembl transcript IDs: ENSMUST00000045004.11, ENSMUST00000226215.2, ENSMUST00000226836.2, ENSMUST00000227156.2, ENSMUST00000228261.2, ENSMUST00000228846.2

Found 792 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCTCCACACACTCCTCCAGCTGCCGCAGGACCCTCGGGTTCTCTGTaGCAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCA +
Preference number: 1 (lower is better)
Translates to: APHTPPAAAGPSGSL*QGTLALRFLAHQQA
Trigger: TGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACAGAGAACCCGAGGGTCCTGCGGCAGCTGGAGGAGTGTGTGGAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR GCA 90 bp CACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTCCTCCAGCTaGCGCAGGACCCTCGGGTTCTCTGTGACAGGGCACTCTGGCGCT +
Preference number: 1 (lower is better)
Translates to: HSGCSRKSCSTHSSS*RRTLGFSVTGHSGA
Trigger: AGCGCCAGAGTGCCCTGTCACAGAGAACCCGAGGGTCCTGCGGCAGCTGGAGGAGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR CCA 90 bp GACCCTCGGGTTCTCTGTGACAGGGCACTCTGGCGCTGCGGTTCCTaGCACATCAGCAGGCAGCTGGCTTTGGGTTTTGAAAGCACAGTT +
Preference number: 1 (lower is better)
Translates to: DPRVLCDRALWRCGS*HISRQLALGFESTV
Trigger: AACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACAGAGAACCCGAGGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR TCA 90 bp AGGCAAGTGCTGTGTCCAGGAACTTGCAGGCAGAGAGGTACATGGTaGGATCGCTGGGGGACAACACCCTGCCTGCAGACCCATTGCCAT +
Preference number: 1 (lower is better)
Translates to: RQVLCPGTCRQRGTW*DRWGTTPCLQTHCH
Trigger: ATGGCAATGGGTCTGCAGGCAGGGTGTTGTCCCCCAGCGATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTTGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR CCA 90 bp ACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTaGCTTTGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGT +
Preference number: 1 (lower is better)
Translates to: TGHSGAAVPGTSAGS*LWVLKAQFNVVKNG
Trigger: ACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR CCA 90 bp CACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTTaGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTATCAAC +
Preference number: 1 (lower is better)
Translates to: HSGAAVPGTSAGSWL*VLKAQFNVVKNGIN
Trigger: GTTGATACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR GCA 90 bp TCTGTAAATCTGAAACAAGGGCATCTTGTCTGGAGGGAAGGCAAGTaGTGTGTCCAGGAACTTGCAGGCAGAGAGGTACATGGTGAGATC +
Preference number: 1 (lower is better)
Translates to: SVNLKQGHLVWREGK*CVQELAGREVHGEI
Trigger: GATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTTGCCTTCCCTCCAGACAAGATGCCCTTGTTTCAGATTTACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR CCA 90 bp TGGAACAAATGCCCATCTGTAAATCTGAAACAAGGGCATCTTGTCTaGAGGGAAGGCAAGTGCTGTGTCCAGGAACTTGCAGGCAGAGAG +
Preference number: 1 (lower is better)
Translates to: WNKCPSVNLKQGHLV*REGKCCVQELAGRE
Trigger: CTCTCTGCCTGCAAGTTCCTGGACACAGCACTTGCCTTCCCTCCAGACAAGATGCCCTTGTTTCAGATTTACAGATGGGCATTTGTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR TCA 90 bp AGCTGCCGATTTCCCCGTATCTTGACCTCAGAAGTTCTAGAATCCTaGCAGTGTGAGGCCTGCATTCTTGGTGATTCTCTTCCAGTTCTG +
Preference number: 1 (lower is better)
Translates to: SCRFPRILTSEVLES*QCEACILGDSLPVL
Trigger: CAGAACTGGAAGAGAATCACCAAGAATGCAGGCCTCACACTGTCAGGATTCTAGAACTTCTGAGGTCAAGATACGGGGAAATCGGCAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR TCA 90 bp AGGAAACTGAATGTTGGCGCAAAAGAGGAAACTCTTTCTTCCTGGTaGTCTCGTCGGAGCTGCCGATTTCCCCGTATCTTGACCTCAGAA +
Preference number: 1 (lower is better)
Translates to: RKLNVGAKEETLSSW*SRRSCRFPRILTSE
Trigger: TTCTGAGGTCAAGATACGGGGAAATCGGCAGCTCCGACGAGATCACCAGGAAGAAAGAGTTTCCTCTTTTGCGCCAACATTCAGTTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR CCA 90 bp GTGGTGAAGAATGGTATCAACTGCCTGATGCAGGAAACTGAATGTTaGCGCAAAAGAGGAAACTCTTTCTTCCTGGTGATCTCGTCGGAG +
Preference number: 1 (lower is better)
Translates to: VVKNGINCLMQETEC*RKRGNSFFLVISSE
Trigger: CTCCGACGAGATCACCAGGAAGAAAGAGTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATTCTTCACCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR GCA 90 bp TGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTATCAACTaGCTGATGCAGGAAACTGAATGTTGGCGCAAAAGAGGAAACTCT +
Preference number: 1 (lower is better)
Translates to: WVLKAQFNVVKNGIN*LMQETECWRKRGNS
Trigger: AGAGTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR TCA 90 bp TGTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTCCTGATGCAGGAAACTaGATGTTGGCGCAAAAGAGG +
Preference number: 2 (lower is better)
Translates to: CDRALWRCGSWHISRQLAPDAGN*MLAQKR
Trigger: CCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGG...AGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR CAA 90 bp AAGGGCATCTTGTCTGGAGGGAAGGCAAGTGCTGTGTCCAGGAACTaGCAGGCAGAGAGGTACATGGTGAGATCGCTGGGGGACAACACC +
Preference number: 2 (lower is better)
Translates to: KGILSGGKASAVSRN*QAERYMVRSLGDNT
Trigger: GGTGTTGTCCCCCAGCGATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTTGCCTTCCCTCCAGACAAGATGCCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGAGCACACAGCTGTCCTaGCCAGGGGTGGGGAGAAGA +
Preference number: 2 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSTQLS*PGVGRR
Trigger: TCTTCTCCCCACCCCTGGCCAGGACAGCTGTGTGCT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
3UTR-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTAGCACACAGCTGTCCTaGCCAGGGGTGGGGAGAAGA +
Preference number: 2 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSTQLS*PGVGRR
Trigger: TCTTCTCCCCACCCCTGGCCAGGACAGCTGTGTGCT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
3UTR-3UTR CCA 90 bp TGTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTATTGCCATCAGCAACTaGGGCTTTTATTCTGTTGCT +
Preference number: 2 (lower is better)
Translates to: CDRALWRCGSWHISRQLAIAISN*GFYSVA
Trigger: AGCAACAGAATAAAAGCCCCAGTTGCTGATGGCAAT...AGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR CCA 90 bp GTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTCAGGAAACTGAATGTTaGCGCAAAAGAGGAAACTCT +
Preference number: 2 (lower is better)
Translates to: VTGHSGAAVPGTSAGSWLQETEC*RKRGNS
Trigger: AGAGTTTCCTCTTTTGCGCCAACATTCAGTTTCCTG...AAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR CCA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTGCAGGCAGCTGGCTTTaGGTTTTGAAAGCACAGTTT +
Preference number: 2 (lower is better)
Translates to: ALLGANTPDAPESPAPHTAGSWL*VLKAQF
Trigger: AAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR CCA 90 bp GAAGAAGCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACTCAGTGTCCACTTCTaGAACAAATGCCCATCTGTA +
Preference number: 2 (lower is better)
Translates to: EEALLGANTPDAPESPAPLSVHF*NKCPSV
Trigger: TACAGATGGGCATTTGTTCCAGAAGTGGACACTGAG...TGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGCTTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR TCA 90 bp GCAGGCAGCTGGCTTTGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTATTCTCTTCCAGTTCTaGCAGGAAGGCTGGGTGCTC +
Preference number: 2 (lower is better)
Translates to: AGSWLWVLKAQFNVVKNGILFQF*QEGWVL
Trigger: GAGCACCCAGCCTTCCTGTCAGAACTGGAAGAGAAT...ACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAAGCACACAGCTGTCCTaGCCAGGGGTGGGGAGAAGA +
Preference number: 2 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSTQLS*PGVGRR
Trigger: TCTTCTCCCCACCCCTGGCCAGGACAGCTGTGTGCT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
3UTR-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGGACTGTGGCAGGGTTaGTTCAAATCCCCCAGTCCC +
Preference number: 2 (lower is better)
Translates to: LEYITRPLRETCLAAEQKGLWQG*FKSPSP
Trigger: GGGACTGGGGGATTTGAACCAACCCTGCCACAGTCC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
3UTR CAA 90 bp AAACTGGGACTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTaGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTG +
Preference number: 2 (lower is better)
Translates to: KLGLEYITRPLRETC*AAEQKIPEQHFRTV
Trigger: CACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAGTCCCAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
3UTR CAA 90 bp GCAGACCCATTGCCATCAGCAACTGGGGCTTTTATTCTGTTGCTTTaGTGGCTGTTTCTTGATTCATCTTCCTCTTTCAGATCTTCCTCA +
Preference number: 2 (lower is better)
Translates to: ADPLPSATGAFILLL*WLFLDSSSSFRSSS
Trigger: TGAGGAAGATCTGAAAGAGGAAGATGAATCAAGAAACAGCCACAAAAGCAACAGAATAAAAGCCCCAGTTGCTGATGGCAATGGGTCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR TCA 90 bp GCAGGCAGCTGGCTTTGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTTTTGTGGCTGTTTCTTaGTTCATCTTCCTCTTTCAG +
Preference number: 2 (lower is better)
Translates to: AGSWLWVLKAQFNVVKNGFVAVS*FIFLFQ
Trigger: CTGAAAGAGGAAGATGAATCAAGAAACAGCCACAAA...ACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR TCA 72 bp ACTCCTCCAGCTGCCGCAGGACCCTCGGGTTCTCTGTaGCAGGGCACTCTGGCGCTGCGGTTCCTGGCACAT +
Preference number: 3 (lower is better)
Translates to: TPPAAAGPSGSL*QGTLALRFLAH
Trigger: ATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACAGAGAACCCGAGGGTCCTGCGGCAGCTGGAGGAGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR CAA 90 bp GTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTCTGCCTGCAGACCCATaGCCATCAGCAACTGGGGCT +
Preference number: 3 (lower is better)
Translates to: VTGHSGAAVPGTSAGSWLLPADP*PSATGA
Trigger: AGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAG...AAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR GCA 72 bp TGCTCCAGAAAGTCCTGCTCCACACACTCCTCCAGCTaGCGCAGGACCCTCGGGTTCTCTGTGACAGGGCAC +
Preference number: 3 (lower is better)
Translates to: CSRKSCSTHSSS*RRTLGFSVTGH
Trigger: GTGCCCTGTCACAGAGAACCCGAGGGTCCTGCGGCAGCTGGAGGAGTGTGTGGAGCAGGACTTTCTGGAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR CAA 90 bp GTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTGCTGTGTCCAGGAACTaGCAGGCAGAGAGGTACATG +
Preference number: 3 (lower is better)
Translates to: VTGHSGAAVPGTSAGSWLAVSRN*QAERYM
Trigger: CATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGC...AAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR TCA 72 bp CTGTGTCCAGGAACTTGCAGGCAGAGAGGTACATGGTaGGATCGCTGGGGGACAACACCCTGCCTGCAGACC +
Preference number: 3 (lower is better)
Translates to: LCPGTCRQRGTW*DRWGTTPCLQT
Trigger: GGTCTGCAGGCAGGGTGTTGTCCCCCAGCGATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR TCA 72 bp GTGAGGCCTGCATTCTTGGTGATTCTCTTCCAGTTCTaGCAGGAAGGCTGGGTGCTCAGTGTCCACTTCTGG +
Preference number: 3 (lower is better)
Translates to: VRPAFLVILFQF*QEGWVLSVHFW
Trigger: CCAGAAGTGGACACTGAGCACCCAGCCTTCCTGTCAGAACTGGAAGAGAATCACCAAGAATGCAGGCCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR GCA 72 bp CTGAAACAAGGGCATCTTGTCTGGAGGGAAGGCAAGTaGTGTGTCCAGGAACTTGCAGGCAGAGAGGTACAT +
Preference number: 3 (lower is better)
Translates to: LKQGHLVWREGK*CVQELAGREVH
Trigger: ATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTTGCCTTCCCTCCAGACAAGATGCCCTTGTTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR CCA 72 bp AAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTaGTTCAAATCCCCCAGTCCCCTCTTCTTTACAGCA +
Preference number: 3 (lower is better)
Translates to: KYLNSTSGLWQG*FKSPSPLFFTA
Trigger: TGCTGTAAAGAAGAGGGGACTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
3UTR CCA 72 bp TGCCCATCTGTAAATCTGAAACAAGGGCATCTTGTCTaGAGGGAAGGCAAGTGCTGTGTCCAGGAACTTGCA +
Preference number: 3 (lower is better)
Translates to: CPSVNLKQGHLV*REGKCCVQELA
Trigger: TGCAAGTTCCTGGACACAGCACTTGCCTTCCCTCCAGACAAGATGCCCTTGTTTCAGATTTACAGATGGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGCAGATCTTCCTCAAGTaGTATGAATGTCTGGATCAA +
Preference number: 3 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQQIFLK*YECLDQ
Trigger: TTGATCCAGACATTCATACAACTTGAGGAAGATCTG...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
3UTR-3UTR CAA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTTTTGTGGCTGTTTCTaGATTCATCTTCCTCTTTCA +
Preference number: 3 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQFCGCF*IHLPLS
Trigger: TGAAAGAGGAAGATGAATCAAGAAACAGCCACAAAA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp TGTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTAAAAGCTCTGGCCGATaGGGGCCTCCTGGTGGCGTG +
Preference number: 4 (lower is better)
Translates to: CDRALWRCGSWHISRQLAKSSGR*GPPGGV
Trigger: CACGCCACCAGGAGGCCCTCATCGGCCAGAGCTTTT...AGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp GTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTCCAGCCCTGGGCTGCTaGACTGATAGCACCGTCTGT +
Preference number: 4 (lower is better)
Translates to: VTGHSGAAVPGTSAGSWLPALGC*TDSTVC
Trigger: ACAGACGGTGCTATCAGTGCAGCAGCCCAGGGCTGG...AAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTAGGGAGCTCAGCAGCTaGGCGCCGGCTCGGAAGCTG +
Preference number: 4 (lower is better)
Translates to: ALLGANTPDAPESPAPHTRELSS*APARKL
Trigger: CAGCTTCCGAGCCGGCGCCCAGCTGCTGAGCTCCCT...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp GCAGAGAGGTACATGGTGAGATCGCTGGGGGACAACACCCTGCCTGCAGACCCACAGCCAGCCCTGGGCTaGTGCACTGATAGCACCGTC +
Preference number: 4 (lower is better)
Translates to: AERYMVRSLGDNTLPADPQPALG*CTDSTV
Trigger: GACGGTGCTATCAGTGCAGCAGCCCAGGGCTGGCTG...TGGGTCTGCAGGCAGGGTGTTGTCCCCCAGCGATCTCACCATGTACCTCTCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTATGCCCTGCCCCCGATaGGGATCGGAGCACAGCAGT +
Preference number: 4 (lower is better)
Translates to: ALLGANTPDAPESPAPHTMPCPR*GSEHSS
Trigger: ACTGCTGTGCTCCGATCCCCATCGGGGGCAGGGCAT...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCCGCCCCGGTCGGCGGTaGCCAGGCCGTAGCGCTTCT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFRPGRR*PGRSAS
Trigger: AGAAGCGCTACGGCCTGGCCACCGCCGACCGGGGCG...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TGTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTAGGAGGAGCCAGCGATaGTACCTACAGCTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: CDRALWRCGSWHISRQLARRSQR*YLQLPG
Trigger: TCCTGGAAGCTGTAGGTACCATCGCTGGCTCCTCCT...AGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp GTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTGGAGGGCATGGCAGATaGTATCCTCACAGATGTTGG +
Preference number: 4 (lower is better)
Translates to: VTGHSGAAVPGTSAGSWLGGHGR*YPHRCW
Trigger: CCAACATCTGTGAGGATATCATCTGCCATGCCCTCC...AAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp GTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTGACCTTCCAGAAGAGTaGGCGGGTAGTCAGGAGAAA +
Preference number: 4 (lower is better)
Translates to: VTGHSGAAVPGTSAGSWLDLPEE*AGSQEK
Trigger: TTTCTCCTGACTACCCGCTCACTCTTCTGGAAGGTC...AAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp GAAGAAGCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCATGGGGCTGCACGTACTaGATGGCACCGATGGCCTGC +
Preference number: 4 (lower is better)
Translates to: EEALLGANTPDAPESPAPWGCTY*MAPMAC
Trigger: GCAGGCCATCGGTGCCATGCAGTACGTGCAGCCCCA...TGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGCTTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp GTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTAGAAGCCAGAACCTCTaGCAAGAGAGAGAGCGCTTG +
Preference number: 4 (lower is better)
Translates to: VTGHSGAAVPGTSAGSWLRSQNL*QERERL
Trigger: CAAGCGCTCTCTCTCTTGGCAGAGGTTCTGGCTTCT...AAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp GAAGAAGCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCAATGAGGGCCTCCTGGTaGCGTGCCAGGAGGTTGGAG +
Preference number: 4 (lower is better)
Translates to: EEALLGANTPDAPESPAPMRASW*RARRLE
Trigger: CTCCAACCTCCTGGCACGCCACCAGGAGGCCCTCAT...TGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGCTTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp GTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTACAGCTCTACACAGGTaGTGTGATGTTCACGGGTCT +
Preference number: 4 (lower is better)
Translates to: VTGHSGAAVPGTSAGSWLTALHR*CDVHGS
Trigger: AGACCCGTGAACATCACATCACCTGTGTAGAGCTGT...AAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp ACACCCTGCCTGCAGACCCATTGCCATCAGCAACTGGGGCTTTTATTCTGTTGCGCATGGGTTCGAGGATaGGGGCCACATCCCCGAGGG +
Preference number: 4 (lower is better)
Translates to: TPCLQTHCHQQLGLLFCCAWVRG*GPHPRG
Trigger: CCCTCGGGGATGTGGCCCGCATCCTCGAACCCATGC...GCAACAGAATAAAAGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAGGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCCCCTGGCCCAGGTGGTaGTCCAGGACGATGAGGGCC +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFPWPRW*SRTMRA
Trigger: GGCCCTCATCGTCCTGGAGCACCACCTGGGCCAGGG...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp TGTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTCTCTTTCTCGTCGCTaGGGTAAACCATGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: CDRALWRCGSWHISRQLASLSRR*GKPCPG
Trigger: TCCTGGACATGGTTTACCGCAGCGACGAGAAAGAGA...AGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp GTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTAGCAGCATGGCCTTCTaGTCAAAGCTGGAGAAGAGT +
Preference number: 4 (lower is better)
Translates to: VTGHSGAAVPGTSAGSWLSSMAF*SKLEKS
Trigger: ACTCTTCTCCAGCTTTGAGCAGAAGGCCATGCTGCT...AAGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp TGTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTAGAGGTCATCCTGTCTaGAAGGTCCACATAGTAGGG +
Preference number: 4 (lower is better)
Translates to: CDRALWRCGSWHISRQLARGHPV*KVHIVG
Trigger: CCCTACTATGTGGACCTTCCAGACAGGATGACCTCT...AGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTACCTGGCATTGGACCTaGGGCTTTCTGGCTGGAAGG +
Preference number: 4 (lower is better)
Translates to: ALLGANTPDAPESPAPHTTWHWT*GFLAGR
Trigger: CCTTCCAGCCAGAAAGCCCCAGGTCCAATGCCAGGT...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGCATGGGTTCGAGGATaGGGGCCACATCCCCGAGGG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLAWVRG*GPHPRG
Trigger: CCCTCGGGGATGTGGCCCGCATCCTCGAACCCATGC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAGTGCTGTGTCCAGGAACTTGCAGGCAGAGAGGTACATGGTGAGATCGCTGGGTCAGGGGCACCCTCCTaGGGCTCAGATTCACCACAC +
Preference number: 4 (lower is better)
Translates to: KCCVQELAGREVHGEIAGSGAPS*GSDSPH
Trigger: GTGTGGTGAATCTGAGCCGCAGGAGGGTGCCCCTGA...CCCAGCGATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp ACACCCTGCCTGCAGACCCATTGCCATCAGCAACTGGGGCTTTTATTCTGTTGCGGCCTCCTGGTGGCGTaGCAGGAGGTTGGAGATGAG +
Preference number: 4 (lower is better)
Translates to: TPCLQTHCHQQLGLLFCCGLLVA*QEVGDE
Trigger: CTCATCTCCAACCTCCTGGCACGCCACCAGGAGGCC...GCAACAGAATAAAAGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAGGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCCCTGGCCCAGGTGGTaGTCCAGGACGATGAGGGCC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQPWPRW*SRTMRA
Trigger: GGCCCTCATCGTCCTGGAGCACCACCTGGGCCAGGG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTGAGGGGGTGGGGCTaGACGTACTGCATGGCACCG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLVRGWG*TYCMAP
Trigger: CGGTGCCATGCAGTACGTGCAGCCCCACCCCCTCAC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGTGCTCAGAGAGCTCTaGCGACGAGGCGCTGAGCCC +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFVLREL*RRGAEP
Trigger: GGGCTCAGCGCCTCGTCGCCAGAGCTCTCTGAGCAC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGTGCTCAGAGAGCTCTaGCGACGAGGCGCTGAGCCC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGVLREL*RRGAEP
Trigger: GGGCTCAGCGCCTCGTCGCCAGAGCTCTCTGAGCAC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCAGTCCAGCAGCAGGTaGCAGGCGGCAGCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQQSSSR*QAAAKA
Trigger: GGCCTTGGCTGCCGCCTGCCACCTGCTGCTGGACTG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGCAGTCCAGCAGCAGGTaGCAGGCGGCAGCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQQSSSR*QAAAKA
Trigger: GGCCTTGGCTGCCGCCTGCCACCTGCTGCTGGACTG...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGATCGCTGGGGGACAACACCCTGCCTGCAGACCCATTGCCATCAGCAACTGGGTCCTGCTTGAGACACTaGATGGACGTCCTCTGGGTT +
Preference number: 4 (lower is better)
Translates to: RSLGDNTLPADPLPSATGSCLRH*MDVLWV
Trigger: AACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGA...CCCAGTTGCTGATGGCAATGGGTCTGCAGGCAGGGTGTTGTCCCCCAGCGATCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp GAAGAAGCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCAAGCAGGACGAACTCCTaGACCTTGCACCTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: EEALLGANTPDAPESPAPSRTNS*TLHLCS
Trigger: GCTGCAGAGGTGCAAGGTCCAGGAGTTCGTCCTGCT...TGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGCTTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACGCCCCGGTCGGCGGTaGCCAGGCCGTAGCGCTTCT +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKRPGRR*PGRSAS
Trigger: AGAAGCGCTACGGCCTGGCCACCGCCGACCGGGGCG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGCCCTGGCCCAGGTaGTGCTCCAGGACGATGAGG +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGWPWPR*CSRTMR
Trigger: CCTCATCGTCCTGGAGCACCACCTGGGCCAGGGCCA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGGGAGCTCAGCAGCTaGGCGCCGGCTCGGAAGCTG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPRELSS*APARKL
Trigger: CAGCTTCCGAGCCGGCGCCCAGCTGCTGAGCTCCCT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTTCTTCCACGCCCGCTTaGTGTAGGCATAGCCACTCA +
Preference number: 4 (lower is better)
Translates to: ALLGANTPDAPESPAPHTSSTPA*CRHSHS
Trigger: TGAGTGGCTATGCCTACACCAAGCGGGCGTGGAAGA...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCTGGCGACGAGGCGCTaGGCCCAATCCCACTGTCTT +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGLATRR*AQSHCL
Trigger: AAGACAGTGGGATTGGGCTCAGCGCCTCGTCGCCAG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGACACCCGAGGCACCCTaGGGTGCTCAGAGAGCTCTG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLTPEAP*GAQRAL
Trigger: CAGAGCTCTCTGAGCACCTCAGGGTGCCTCGGGTGT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCACACCCGAGGCACCCTaGGGTGCTCAGAGAGCTCTG +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFTPEAP*GAQRAL
Trigger: CAGAGCTCTCTGAGCACCTCAGGGTGCCTCGGGTGT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTTCATCTTGTCTTCGATaGCAAGAGCGAGGGACTGGG +
Preference number: 4 (lower is better)
Translates to: ALLGANTPDAPESPAPHTSSCLR*QERGTG
Trigger: CCCAGTCCCTCGCTCTTGTCATCGAAGACAAGATGA...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTAAAAGCTCTGGCCGATaGGGGCCTCCTGGTGGCGTG +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGKSSGR*GPPGGV
Trigger: CACGCCACCAGGAGGCCCTCATCGGCCAGAGCTTTT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GAAGAAGCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCAGCAGCAGGCTGTGGATaGACTCCGTGTTCTTCCCTT +
Preference number: 4 (lower is better)
Translates to: EEALLGANTPDAPESPAPAAGCG*TPCSSL
Trigger: AAGGGAAGAACACGGAGTTCATCCACAGCCTGCTGC...TGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGCTTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTATGGCAAGGAATGCGTaGCCAGGCTCACCCAGGCGG +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGMARNA*PGSPRR
Trigger: CCGCCTGGGTGAGCCTGGTCACGCATTCCTTGCCAT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GCAGAGAGGTACATGGTGAGATCGCTGGGGGACAACACCCTGCCTGCAGACCCACAAGACGTATCCATCTaGAAGAAAGCGGGGTCCAAG +
Preference number: 4 (lower is better)
Translates to: AERYMVRSLGDNTLPADPQDVSI*KKAGSK
Trigger: CTTGGACCCCGCTTTCTTTCAGATGGATACGTCTTG...TGGGTCTGCAGGCAGGGTGTTGTCCCCCAGCGATCTCACCATGTACCTCTCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGGAACACCAGGAGGGTaGAGAGCTCCGAGACGGTGG +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFGTPGG*RAPRRW
Trigger: CCACCGTCTCGGAGCTCTGCACCCTCCTGGTGTTCC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGTGTCTGGCCCTTGTTaGCCTTCCCTGGGGGCTCCT +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGVSGPC*PSLGAP
Trigger: AGGAGCCCCCAGGGAAGGGCAACAAGGGCCAGACAC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTGTCTGGCCCTTGTTaGCCTTCCCTGGGGGCTCCT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLVSGPC*PSLGAP
Trigger: AGGAGCCCCCAGGGAAGGGCAACAAGGGCCAGACAC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCAGCCAGCCCTGGGCTaGTGCACTGATAGCACCGTC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGQPALG*CTDSTV
Trigger: GACGGTGCTATCAGTGCAGCAGCCCAGGGCTGGCTG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAGTGCTGTGTCCAGGAACTTGCAGGCAGAGAGGTACATGGTGAGATCGCTGGGGCCTCGACTGTCTCCTaGTTCTCCCTCTGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: KCCVQELAGREVHGEIAGASTVS*FSLCCF
Trigger: GAAGCAGCAGAGGGAGAAGCAGGAGACAGTCGAGGC...CCCAGCGATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGGCCTCCTGGTGGCGTaGCAGGAGGTTGGAGATGAG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLGLLVA*QEVGDE
Trigger: CTCATCTCCAACCTCCTGGCACGCCACCAGGAGGCC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GAAGAAGCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCATGGACCTTGCACCTCTaGAGCAGGCTGTGGATGAAC +
Preference number: 4 (lower is better)
Translates to: EEALLGANTPDAPESPAPWTLHL*SRLWMN
Trigger: GTTCATCCACAGCCTGCTGCAGAGGTGCAAGGTCCA...TGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGCTTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGTGAGGGGGTGGGGCTaGACGTACTGCATGGCACCG +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQVRGWG*TYCMAP
Trigger: CGGTGCCATGCAGTACGTGCAGCCCCACCCCCTCAC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGGTGAGGGGGTGGGGCTaGACGTACTGCATGGCACCG +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQVRGWG*TYCMAP
Trigger: CGGTGCCATGCAGTACGTGCAGCCCCACCCCCTCAC...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GAAGAAGCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACAGCGAGGTCAGGTaGTGGGGAGAGATTCTTAGC +
Preference number: 4 (lower is better)
Translates to: EEALLGANTPDAPESPAPHSEVR*WGEILS
Trigger: GCTAAGAATCTCTCCCCAGCACCTGACCTCGCTGTG...TGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGCTTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTGCGAGGGACTGGGAGTaGTTTATCACTTCCAGCAGT +
Preference number: 4 (lower is better)
Translates to: ALLGANTPDAPESPAPHTARDWE*FITSSS
Trigger: ACTGCTGGAAGTGATAAACCACTCCCAGTCCCTCGC...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCGCACCAGCCAGCCCTaGGCTGCTGCACTGATAGCA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGRTSQP*AAALIA
Trigger: TGCTATCAGTGCAGCAGCCCAGGGCTGGCTGGTGCG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGCAAGGCCGCTCGCTTaGAGTATGCCCTGCCCCCGA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPARPLA*SMPCPR
Trigger: TCGGGGGCAGGGCATACTCCAAGCGAGCGGCCTTGC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGCAAGGCCGCTCGCTTaGAGTATGCCCTGCCCCCGA +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQARPLA*SMPCPR
Trigger: TCGGGGGCAGGGCATACTCCAAGCGAGCGGCCTTGC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCCTGGGGCTTTCTGGCTaGAAGGCTGCCAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFLGLSG*KAASKA
Trigger: GGCCTTGCTGGCAGCCTTCCAGCCAGAAAGCCCCAG...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGCGCGGTGGAGCTaGTGTCTATGCCCGTCCTGG +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQGARWS*CLCPSW
Trigger: CCAGGACGGGCATAGACACCAGCTCCACCGCGCACC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCCGATGAGGGCCTCCTaGTGGCGTGCCAGGAGGTTG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPPMRAS*WRARRL
Trigger: CAACCTCCTGGCACGCCACCAGGAGGCCCTCATCGG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
57% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAGTGGGGGCAGACATTaGGGGCCTGGGTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSGGRH*GPGSAA
Trigger: AGCTGCAGACCCAGGCCCCCAATGTCTGCCCCCACT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTGGCCCTGGCCCAGGTaGTGCTCCAGGACGATGAGG +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQWPWPR*CSRTMR
Trigger: CCTCATCGTCCTGGAGCACCACCTGGGCCAGGGCCA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
3UTR CAA 72 bp TTGTCTGGAGGGAAGGCAAGTGCTGTGTCCAGGAACTaGCAGGCAGAGAGGTACATGGTGAGATCGCTGGGG +
Preference number: 4 (lower is better)
Translates to: LSGGKASAVSRN*QAERYMVRSLG
Trigger: CCCCAGCGATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTTGCCTTCCCTCCAGACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTGGCCTGCTGGAAGTTaGGAGCCCTCTGCCACTCTC +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLWPAGS*EPSATL
Trigger: GAGAGTGGCAGAGGGCTCTCAACTTCCAGCAGGCCA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGCCTGCTGGAAGTTaGGAGCCCTCTGCCACTCTC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGWPAGS*EPSATL
Trigger: GAGAGTGGCAGAGGGCTCTCAACTTCCAGCAGGCCA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCCCTCTCACCACAGCTaGGACCAGAAGGCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQPSHHS*DQKALG
Trigger: TCCCAGGGCCTTCTGGTCTCAGCTGTGGTGAGAGGG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGATGGCAAGGAATGCGTaGCCAGGCTCACCCAGGCGG +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQMARNA*PGSPRR
Trigger: CCGCCTGGGTGAGCCTGGTCACGCATTCCTTGCCAT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGGTCAAGCTCGCCACTaGAGACGGCAAAAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFGQARH*RRQKPG
Trigger: GCCAGGCTTTTGCCGTCTTCAGTGGCGAGCTTGACC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGAACACCAGGAGGGTaGAGAGCTCCGAGACGGTGG +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQGTPGG*RAPRRW
Trigger: CCACCGTCTCGGAGCTCTGCACCCTCCTGGTGTTCC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCCTCGGCAAGAGGCTaGAGCAGGCAGCCAAGCACC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSSARG*SRQPST
Trigger: GGTGCTTGGCTGCCTGCTGCAGCCTCTTGCCGAGGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCCAGGGTGCTCGGTaGTCTGTGTCTGGCCCTTGT +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGCQGAR*SVSGPC
Trigger: ACAAGGGCCAGACACAGAGCACCGAGCACCCTGGCA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTCAGGGGCACCCTCCTaGGGCTCAGATTCACCACAC +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSGAPS*GSDSPH
Trigger: GTGTGGTGAATCTGAGCCGCAGGAGGGTGCCCCTGA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGGCCTCCTGGTGGCGTaGCAGGAGGTTGGAGATGAG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPGLLVA*QEVGDE
Trigger: CTCATCTCCAACCTCCTGGCACGCCACCAGGAGGCC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAGTGCTGTGTCCAGGAACTTGCAGGCAGAGAGGTACATGGTGAGATCGCTGGGCTCCAGATCTGGTCCTaGCCCAGATTGATGAGGCTC +
Preference number: 4 (lower is better)
Translates to: KCCVQELAGREVHGEIAGLQIWS*PRLMRL
Trigger: GAGCCTCATCAATCTGGGGCAGGACCAGATCTGGAG...CCCAGCGATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAGGACGATGAGGGCCTaGAGCAGCTTGAGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFRTMRA*SSLSSS
Trigger: CGAGCTGCTCAAGCTGCTGCAGGCCCTCATCGTCCT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GCAGAGAGGTACATGGTGAGATCGCTGGGGGACAACACCCTGCCTGCAGACCCATGTACGCACTGTGATTaGGCAGGTAAGGAAACACGT +
Preference number: 4 (lower is better)
Translates to: AERYMVRSLGDNTLPADPCTHCD*AGKETR
Trigger: ACGTGTTTCCTTACCTGCGCAATCACAGTGCGTACA...TGGGTCTGCAGGCAGGGTGTTGTCCCCCAGCGATCTCACCATGTACCTCTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTCCTGTGTGGGCTGCTaGGCACAGACGACAGCGACT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSCVGC*AQTTAT
Trigger: AGTCGCTGTCGTCTGTGCCCAGCAGCCCACACAGGA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGCAACAGCAGGAGCATaGGTTCGAGGATGCGGGCCA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGATAGA*VRGCGP
Trigger: TGGCCCGCATCCTCGAACCCATGCTCCTGCTGTTGC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCATGCCCTGCCCCCGATaGGGATCGGAGCACAGCAGT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPMPCPR*GSEHSS
Trigger: ACTGCTGTGCTCCGATCCCCATCGGGGGCAGGGCAT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCTGGGGCTTTCTGGCTaGAAGGCTGCCAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQLGLSG*KAASKA
Trigger: GGCCTTGCTGGCAGCCTTCCAGCCAGAAAGCCCCAG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGGACCTGGGGCTTTCTaGCTGGAAGGCTGCCAGCAA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGGPGAF*LEGCQQ
Trigger: TTGCTGGCAGCCTTCCAGCCAGAAAGCCCCAGGTCC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGGACCTGGGGCTTTCTaGCTGGAAGGCTGCCAGCAA +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFGPGAF*LEGCQQ
Trigger: TTGCTGGCAGCCTTCCAGCCAGAAAGCCCCAGGTCC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCATGAGGGCCTCCTGGTaGCGTGCCAGGAGGTTGGAG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPMRASW*RARRLE
Trigger: CTCCAACCTCCTGGCACGCCACCAGGAGGCCCTCAT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGCACCGATGGCCTGCTaGAAGTTGAGAGCCCTCTGC +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLAPMAC*KLRALC
Trigger: GCAGAGGGCTCTCAACTTCCAGCAGGCCATCGGTGC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGCTGCACGTACTGCATaGCACCGATGGCCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLAARTA*HRWPAG
Trigger: TCCAGCAGGCCATCGGTGCCATGCAGTACGTGCAGC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TGTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTGTAGCTCTTCCAAAATaGCGTTCTTGGCATTTCTCA +
Preference number: 4 (lower is better)
Translates to: CDRALWRCGSWHISRQLAVALPK*RSWHFS
Trigger: TGAGAAATGCCAAGAACGCCATTTTGGAAGAGCTAC...AGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp TGTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTCTTGCTTTCCAGGTTaGGTGTTCTTGTCACAAAGT +
Preference number: 4 (lower is better)
Translates to: CDRALWRCGSWHISRQLASCFPG*VFLSQS
Trigger: ACTTTGTGACAAGAACACCCAACCTGGAAAGCAAGA...AGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTGGCGCTGCGGTTCCTaGCACATCAGCAGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQWRCGS*HISRQL
Trigger: CAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTGGCGCTGCGGTTCCTaGCACATCAGCAGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQWRCGS*HISRQL
Trigger: CAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTGTGACAGGGCACTCTaGCGCTGCGGTTCCTGGCAC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQCDRAL*RCGSWH
Trigger: GTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCTGCTCCTTGCCTGGTaGGTCCCTGCTGATGTGGTT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLLLLAW*VPADVV
Trigger: AACCACATCAGCAGGGACTCACCAGGCAAGGAGCAG...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGAGCCTGTGTCTTGTCTaGGTCTGCTCGCACCAGGCT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSLCLV*VCSHQA
Trigger: AGCCTGGTGCGAGCAGACTCAGACAAGACACAGGCT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGCACCAGCTGCAGCACTaGGTCTGTCTGCAGGGTGCT +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQHQLQH*VCLQGA
Trigger: AGCACCCTGCAGACAGACTCAGTGCTGCAGCTGGTG...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCACCAGCTGCAGCACTaGGTCTGTCTGCAGGGTGCT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQHQLQH*VCLQGA
Trigger: AGCACCCTGCAGACAGACTCAGTGCTGCAGCTGGTG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp ACACCCTGCCTGCAGACCCATTGCCATCAGCAACTGGGGCTTTTATTCTGTTGCTCTTCCAGAGAGACCTaGGGTTGGGCTTTCACCTCC +
Preference number: 4 (lower is better)
Translates to: TPCLQTHCHQQLGLLFCCSSRET*GWAFTS
Trigger: GGAGGTGAAAGCCCAACCTCAGGTCTCTCTGGAAGA...GCAACAGAATAAAAGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAGGGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCAAGCTCGCCACTaGAGACGGCAAAAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQGQARH*RRQKPG
Trigger: GCCAGGCTTTTGCCGTCTTCAGTGGCGAGCTTGACC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCCAGCCCTGGGCTGCTaGACTGATAGCACCGTCTGT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPPALGC*TDSTVC
Trigger: ACAGACGGTGCTATCAGTGCAGCAGCCCAGGGCTGG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
54% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTCAGGGGCACCCTCCTaGGGCTCAGATTCACCACAC +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQSGAPS*GSDSPH
Trigger: GTGTGGTGAATCTGAGCCGCAGGAGGGTGCCCCTGA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGCCTCGACTGTCTCCTaGTTCTCCCTCTGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGASTVS*FSLCCF
Trigger: GAAGCAGCAGAGGGAGAAGCAGGAGACAGTCGAGGC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTGGAGCTGGTGTCTATaGCCGTCCTGGACACAGCCT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLWSWCL*PSWTQP
Trigger: AGGCTGTGTCCAGGACGGGCATAGACACCAGCTCCA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTCGATCTGCAGTGGGTaGTCGCTCCAGATCTGGTCC +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSICSG*SLQIWS
Trigger: GGACCAGATCTGGAGCGAGCACCCACTGCAGATCGA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTTGAGCAGCTCGATCTaGAGTGGGTGCTCGCTCCAG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLLSSSI*SGCSLQ
Trigger: CTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AATGGTATCAACTGCCTGATGCAGGAAACTGAATGTTGGCGCAAAAGAGGAAACCCCTGGCCCAGGTGGTaGTCCAGGACGATGAGGGCC +
Preference number: 4 (lower is better)
Translates to: NGINCLMQETECWRKRGNPWPRW*SRTMRA
Trigger: GGCCCTCATCGTCCTGGAGCACCACCTGGGCCAGGG...GTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGGACAACACCCTGCCTaGAGACCCATTGCCATCAGC +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFGQHPA*RPIAIS
Trigger: GCTGATGGCAATGGGTCTGCAGGCAGGGTGTTGTCC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTGGGGGACAACACCCTaGCTGCAGACCCATTGCCAT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLWGTTP*LQTHCH
Trigger: ATGGCAATGGGTCTGCAGGCAGGGTGTTGTCCCCCA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAGGCAGGGAGGCGGATaGAAGGGCTTGTCAGAACGC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQRQGGG*KGLSER
Trigger: GCGTTCTGACAAGCCCTTCCATCCGCCTCCCTGCCT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTCGAGTTCCCGCTGCTaGGCTCCAGATCTAGGTAGG +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSSSRC*APDLGR
Trigger: CCTACCTAGATCTGGAGCCCAGCAGCGGGAACTCGA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGCTTGTTGCCCTTCCCTaGGGGCTCCTCGGGCTTGTT +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQLVALP*GLLGLV
Trigger: AACAAGCCCGAGGAGCCCCCAGGGAAGGGCAACAAG...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCTTGTTGCCCTTCCCTaGGGGCTCCTCGGGCTTGTT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQLVALP*GLLGLV
Trigger: AACAAGCCCGAGGAGCCCCCAGGGAAGGGCAACAAG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTCCTGTGTGGGCTGCTaGGCACAGACGACAGCGACT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSCVGC*AQTTAT
Trigger: AGTCGCTGTCGTCTGTGCCCAGCAGCCCACACAGGA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp ACACCCTGCCTGCAGACCCATTGCCATCAGCAACTGGGGCTTTTATTCTGTTGCGGGTCCAGGAGGGCATaGCAGATGATATCCTCACAG +
Preference number: 4 (lower is better)
Translates to: TPCLQTHCHQQLGLLFCCGSRRA*QMISSQ
Trigger: CTGTGAGGATATCATCTGCCATGCCCTCCTGGACCC...GCAACAGAATAAAAGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAGGGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGCAACAGCAGGAGCATaGGTTCGAGGATGCGGGCCA +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQATAGA*VRGCGP
Trigger: TGGCCCGCATCCTCGAACCCATGCTCCTGCTGTTGC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTTGGTGGGCATTTCTCTaGTTCCTTCTCTACTTCAGC +
Preference number: 4 (lower is better)
Translates to: ALLGANTPDAPESPAPHTWWAFL*FLLYFS
Trigger: GCTGAAGTAGAGAAGGAACCAGAGAAATGCCCACCA...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp GCAGGCAGCTGGCTTTGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTCTGGGGCTTTCTGGCTaGAAGGCTGCCAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: AGSWLWVLKAQFNVVKNGLGLSG*KAASKA
Trigger: GGCCTTGCTGGCAGCCTTCCAGCCAGAAAGCCCCAG...ACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCACCTGGCATTGGACCTaGGGCTTTCTGGCTGGAAGG +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFTWHWT*GFLAGR
Trigger: CCTTCCAGCCAGAAAGCCCCAGGTCCAATGCCAGGT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGATGTGGTGATGGCTTaGAGCTCCACGTCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGDVVMA*SSTSAS
Trigger: GGAGGCTGACGTGGAGCTCCAAGCCATCACCACATC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAGGTGCGCGGTGGAGCTaGTGTCTATGCCCGTCCTGG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKGARWS*CLCPSW
Trigger: CCAGGACGGGCATAGACACCAGCTCCACCGCGCACC...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACCGATGAGGGCCTCCTaGTGGCGTGCCAGGAGGTTG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKPMRAS*WRARRL
Trigger: CAACCTCCTGGCACGCCACCAGGAGGCCCTCATCGG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCAATGAGCAGGGAGTaGGGGCAGACATTGGGGGCC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSMSRE*GQTLGA
Trigger: GGCCCCCAATGTCTGCCCCCACTCCCTGCTCATTGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGAGCAGGACGAACTCCTaGACCTTGCACCTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSRTNS*TLHLCS
Trigger: GCTGCAGAGGTGCAAGGTCCAGGAGTTCGTCCTGCT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCGTAGCGCTTCTGGCTaGTGTACATGGACGCGGACA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGRSASG*CTWTRT
Trigger: TGTCCGCGTCCATGTACACCAGCCAGAAGCGCTACG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCAGCTCGATCTGCAGTaGGTGCTCGCTCCAGATCTG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLQLDLQ*VLAPDL
Trigger: CAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTG...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGGCTGCACGTACTGCATaGCACCGATGGCCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQAARTA*HRWPAG
Trigger: TCCAGCAGGCCATCGGTGCCATGCAGTACGTGCAGC...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGAAGACGGCAAAAGCCTaGCGCTTCAGCAGCATGGCC +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLKTAKA*RFSSMA
Trigger: GGCCATGCTGCTGAAGCGCCAGGCTTTTGCCGTCTT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAGACGGCAAAAGCCTaGCGCTTCAGCAGCATGGCC +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFKTAKA*RFSSMA
Trigger: GGCCATGCTGCTGAAGCGCCAGGCTTTTGCCGTCTT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTCTAGGGCTTTTAGGTaGACGCCACTGGGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQSRAFR*TPLGRA
Trigger: TGCCCTGCCCAGTGGCGTTCACCTAAAAGCCCTAGA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS-3UTR TCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCTGCTCCTTGCCTGGTaGGTCCCTGCTGATGTGGTT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQLLLAW*VPADVV
Trigger: AACCACATCAGCAGGGACTCACCAGGCAAGGAGCAG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACTGGCGACGAGGCGCTaGGCCCAATCCCACTGTCTT +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKLATRR*AQSHCL
Trigger: AAGACAGTGGGATTGGGCTCAGCGCCTCGTCGCCAG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCCTGAGTTCTCCTGCTTaGGACACTGGATGGACGTCC +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFLSSPA*DTGWTS
Trigger: GGACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAG...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAAAAAGCTCTGGCCGATaGGGGCCTCCTGGTGGCGTG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKKSSGR*GPPGGV
Trigger: CACGCCACCAGGAGGCCCTCATCGGCCAGAGCTTTT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
53% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGCAGCAGGCTGTGGATaGACTCCGTGTTCTTCCCTT +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGAAGCG*TPCSSL
Trigger: AAGGGAAGAACACGGAGTTCATCCACAGCCTGCTGC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACCCTCTCACCACAGCTaGGACCAGAAGGCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKPSHHS*DQKALG
Trigger: TCCCAGGGCCTTCTGGTCTCAGCTGTGGTGAGAGGG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTAACATGGTTTTCTCGTaGGTCAGGAGATGGTCAATG +
Preference number: 4 (lower is better)
Translates to: ALLGANTPDAPESPAPHTNMVFS*VRRWSM
Trigger: CATTGACCATCTCCTGACTCACGAGAAAACCATGTT...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCCCAGCATGCACTTCTaGTCCTTGCCTGGTGAGTCC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPPSMHF*SLPGES
Trigger: GGACTCACCAGGCAAGGAGCAGAAGTGCATGCTGGG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
53% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCTCGGCAAGAGGCTaGAGCAGGCAGCCAAGCACC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKSSARG*SRQPST
Trigger: GGTGCTTGGCTGCCTGCTGCAGCCTCTTGCCGAGGA...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGACCCCATTCGGTTGCTaGCTTCCTGTGTGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQTPFGC*LPVWAA
Trigger: AGCAGCCCACACAGGAAGGCAGCAACCGAATGGGGT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTCTGCAGACTCTGTGTaGTCACTGCTATCCCCGCCA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSADSV*SLLSPP
Trigger: TGGCGGGGATAGCAGTGAGCACACAGAGTCTGCAGA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGCCTCGACTGTCTCCTaGTTCTCCCTCTGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPASTVS*FSLCCF
Trigger: GAAGCAGCAGAGGGAGAAGCAGGAGACAGTCGAGGC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTGGAGCTGGTGTCTATaGCCGTCCTGGACACAGCCT +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQWSWCL*PSWTQP
Trigger: AGGCTGTGTCCAGGACGGGCATAGACACCAGCTCCA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTGGAGCTGGTGTCTATaGCCGTCCTGGACACAGCCT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPWSWCL*PSWTQP
Trigger: AGGCTGTGTCCAGGACGGGCATAGACACCAGCTCCA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCCTGGGTCTGCAGCTTaGCATAAAAGCTCTGGCCGA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGPGSAA*HKSSGR
Trigger: TCGGCCAGAGCTTTTATGGCAAGCTGCAGACCCAGG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGACCTTGCACCTCTaGAGCAGGCTGTGGATGAAC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGWTLHL*SRLWMN
Trigger: GTTCATCCACAGCCTGCTGCAGAGGTGCAAGGTCCA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCGAACTCCTGGACCTTaGACCTCTGCAGCAGGCTGT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPRTPGP*TSAAGC
Trigger: ACAGCCTGCTGCAGAGGTGCAAGGTCCAGGAGTTCG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCGATCTGCAGTGGGTaGTCGCTCCAGATCTGGTCC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSICSG*SLQIWS
Trigger: GGACCAGATCTGGAGCGAGCACCCACTGCAGATCGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGCTTGCTGTGGCGCCGTaGCTGCTTTCTGTTCCACAC +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQLAVAP*LLSVPH
Trigger: GTGTGGAACAGAAAGCAGGCACGGCGCCACAGCAAG...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCTTGCTGTGGCGCCGTaGCTGCTTTCTGTTCCACAC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQLAVAP*LLSVPH
Trigger: GTGTGGAACAGAAAGCAGGCACGGCGCCACAGCAAG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTACCTCCTTCACCAGCTaGAGCACTGAGTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGTSFTS*STESVC
Trigger: GCAGACAGACTCAGTGCTGCAGCTGGTGAAGGAGGT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTCATCCCCTTTGATCTaGGCTGGCCTCTTCACCACC +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSSPLI*AGLFTT
Trigger: GGTGGTGAAGAGGCCAGCGCAGATCAAAGGGGATGA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGAAGGGAAGGCCTCCTaGAGGTCTGGTATGGACAGT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFEGKAS*RSGMDS
Trigger: ACTGTCCATACCAGACCTGCAGGAGGCCTTCCCTTC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCCTGCAGACCCATTaGCATCAGCAACTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGCLQTH*HQQLGL
Trigger: AAGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGGGACAACACCCTGCCTaGAGACCCATTGCCATCAGC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQGQHPA*RPIAIS
Trigger: GCTGATGGCAATGGGTCTGCAGGCAGGGTGTTGTCC...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTGGGGGACAACACCCTaGCTGCAGACCCATTGCCAT +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQWGTTP*LQTHCH
Trigger: ATGGCAATGGGTCTGCAGGCAGGGTGTTGTCCCCCA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTTAGGTGAACGCCACTaGGCAGGGCAGGATGCAAGC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQLGERH*AGQDAS
Trigger: GCTTGCATCCTGCCCTGCCCAGTGGCGTTCACCTAA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTCAGGAGTGTCTGGGTaGCAGCTGAGAGGATGTGCA +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSGVSG*QLRGCA
Trigger: TGCACATCCTCTCAGCTGCCACCCAGACACTCCTGA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCGAGTTCCCGCTGCTaGGCTCCAGATCTAGGTAGG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSSSRC*APDLGR
Trigger: CCTACCTAGATCTGGAGCCCAGCAGCGGGAACTCGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGTCTCCTTGTTCAGCTaGTTCCAGAGCACACGAGCC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGVSLFS*FQSTRA
Trigger: GGCTCGTGTGCTCTGGAACCAGCTGAACAAGGAGAC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTATCCTCACAGATGTTaGCAGTCGGGGCCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFYPHRC*QSGPGS
Trigger: ACTGCCTGGCCCCGACTGCCAACATCTGTGAGGATA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTATCCTCACAGATGTTaGCAGTCGGGGCCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLYPHRC*QSGPGS
Trigger: ACTGCCTGGCCCCGACTGCCAACATCTGTGAGGATA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGGGTCCAGGAGGGCATaGCAGATGATATCCTCACAG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLGSRRA*QMISSQ
Trigger: CTGTGAGGATATCATCTGCCATGCCCTCCTGGACCC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACGCACCAGCCAGCCCTaGGCTGCTGCACTGATAGCA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKRTSQP*AAALIA
Trigger: TGCTATCAGTGCAGCAGCCCAGGGCTGGCTGGTGCG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTACGTCCTCTGGGTTTTaGGCTGGAGCAACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGTSSGF*AGATAG
Trigger: TCCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCAGCAGTTTTCCTCGTaGCTCAGGTCCTGCAGATCG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLQQFSS*LRSCRS
Trigger: CGATCTGCAGGACCTGAGCCACGAGGAAAACTGCTG...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCAGCAGTTTTCCTCGTaGCTCAGGTCCTGCAGATCG +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGQQFSS*LRSCRS
Trigger: CGATCTGCAGGACCTGAGCCACGAGGAAAACTGCTG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAATGCCCTGCCCCCGATaGGGATCGGAGCACAGCAGT +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKMPCPR*GSEHSS
Trigger: ACTGCTGTGCTCCGATCCCCATCGGGGGCAGGGCAT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGGCTTAACCTGGCATTaGACCTGGGGCTTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLGLTWH*TWGFLA
Trigger: AGCCAGAAAGCCCCAGGTCCAATGCCAGGTTAAGCC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGATGTGGTGATGGCTTaGAGCTCCACGTCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQDVVMA*SSTSAS
Trigger: GGAGGCTGACGTGGAGCTCCAAGCCATCACCACATC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AATGGTATCAACTGCCTGATGCAGGAAACTGAATGTTGGCGCAAAAGAGGAAACGGTGCGCGGTGGAGCTaGTGTCTATGCCCGTCCTGG +
Preference number: 4 (lower is better)
Translates to: NGINCLMQETECWRKRGNGARWS*CLCPSW
Trigger: CCAGGACGGGCATAGACACCAGCTCCACCGCGCACC...GTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CTTCTGGAACAAATGCCCATCTGTAAATCTGAAACAAGGGCATCTTGTCTGGAGCCGATGAGGGCCTCCTaGTGGCGTGCCAGGAGGTTG +
Preference number: 4 (lower is better)
Translates to: LLEQMPICKSETRASCLEPMRAS*WRARRL
Trigger: CAACCTCCTGGCACGCCACCAGGAGGCCCTCATCGG...CTCCAGACAAGATGCCCTTGTTTCAGATTTACAGATGGGCATTTGTTCCAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAAGTGGGGGCAGACATTaGGGGCCTGGGTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKSGGRH*GPGSAA
Trigger: AGCTGCAGACCCAGGCCCCCAATGTCTGCCCCCACT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATGGGAGGTGAGGGGGTaGGGCTGCACGTACTGCATG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKWEVRG*GCTYCM
Trigger: CATGCAGTACGTGCAGCCCCACCCCCTCACCTCCCA...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCAGAGGATGACCCTTTaGTGGCTCCCAGGAGATCCA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGQRMTL*WLPGDP
Trigger: TGGATCTCCTGGGAGCCACCAAAGGGTCATCCTCTG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTATCTTGGTCTTGCTGTaGCGCCGTGCCTGCTTTCTG +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGILVLL*RRACFL
Trigger: CAGAAAGCAGGCACGGCGCCACAGCAAGACCAAGAT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGATCTTGGTCTTGCTGTaGCGCCGTGCCTGCTTTCTG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLILVLL*RRACFL
Trigger: CAGAAAGCAGGCACGGCGCCACAGCAAGACCAAGAT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCCCCTTTGATCTGCGCTaGCCTCTTCACCACCTCCTT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFPFDLR*PLHHLL
Trigger: AAGGAGGTGGTGAAGAGGCCAGCGCAGATCAAAGGG...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCCCTTTGATCTGCGCTaGCCTCTTCACCACCTCCTT +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGPFDLR*PLHHLL
Trigger: AAGGAGGTGGTGAAGAGGCCAGCGCAGATCAAAGGG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTCTTCCACGCCCGCTTaGTGTAGGCATAGCCACTCA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSSTPA*CRHSHS
Trigger: TGAGTGGCTATGCCTACACCAAGCGGGCGTGGAAGA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAAGACGGCAAAAGCCTaGCGCTTCAGCAGCATGGCC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQKTAKA*RFSSMA
Trigger: GGCCATGCTGCTGAAGCGCCAGGCTTTTGCCGTCTT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATGTGACAGGGCACTCTaGCGCTGCGGTTCCTGGCAC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKCDRAL*RCGSWH
Trigger: GTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGGAGGGCATGGCAGATaGTATCCTCACAGATGTTGG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLGGHGR*YPHRCW
Trigger: CCAACATCTGTGAGGATATCATCTGCCATGCCCTCC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCTGAGTTCTCCTGCTTaGGACACTGGATGGACGTCC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPLSSPA*DTGWTS
Trigger: GGACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GCAGGCAGCTGGCTTTGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTAGCCTGTGTCTTGTCTaGGTCTGCTCGCACCAGGCT +
Preference number: 4 (lower is better)
Translates to: AGSWLWVLKAQFNVVKNGSLCLV*VCSHQA
Trigger: AGCCTGGTGCGAGCAGACTCAGACAAGACACAGGCT...ACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGCAGCAGGCTGTGGATaGACTCCGTGTTCTTCCCTT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPAAGCG*TPCSSL
Trigger: AAGGGAAGAACACGGAGTTCATCCACAGCCTGCTGC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AATGGTATCAACTGCCTGATGCAGGAAACTGAATGTTGGCGCAAAAGAGGAAACCCCTCTCACCACAGCTaGGACCAGAAGGCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: NGINCLMQETECWRKRGNPSHHS*DQKALG
Trigger: TCCCAGGGCCTTCTGGTCTCAGCTGTGGTGAGAGGG...GTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp ACACCCTGCCTGCAGACCCATTGCCATCAGCAACTGGGGCTTTTATTCTGTTGCAAAGTAAACAGAGGATaGCCCTTTGGTGGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: TPCLQTHCHQQLGLLFCCKVNRG*PFGGSQ
Trigger: CTGGGAGCCACCAAAGGGTCATCCTCTGTTTACTTT...GCAACAGAATAAAAGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAGGGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGACTTCTCATCCCCTTTaGTCTGCGCTGGCCTCTTCA +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLTSHPL*SALASS
Trigger: TGAAGAGGCCAGCGCAGATCAAAGGGGATGAGAAGT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCACTTCTCATCCCCTTTaGTCTGCGCTGGCCTCTTCA +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFTSHPL*SALASS
Trigger: TGAAGAGGCCAGCGCAGATCAAAGGGGATGAGAAGT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp ACACCCTGCCTGCAGACCCATTGCCATCAGCAACTGGGGCTTTTATTCTGTTGCGCTTCCAGGATTCTCTaGGTGATTTCCTGCAGGTCT +
Preference number: 4 (lower is better)
Translates to: TPCLQTHCHQQLGLLFCCASRIL*VISCRS
Trigger: AGACCTGCAGGAAATCACTCAGAGAATCCTGGAAGC...GCAACAGAATAAAAGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAGGGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCTTCCAGAGAGACCTaGGGTTGGGCTTTCACCTCC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSSRET*GWAFTS
Trigger: GGAGGTGAAAGCCCAACCTCAGGTCTCTCTGGAAGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTCAATTCAGACACCATaGTGGGCCACAGCGAGGTCA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSIQTP*WATARS
Trigger: TGACCTCGCTGTGGCCCATCATGGTGTCTGAATTGA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTATTCTCTTCCAGTTCTaGCAGGAAGGCTGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGILFQF*QEGWVL
Trigger: GAGCACCCAGCCTTCCTGTCAGAACTGGAAGAGAAT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGAGCGTCTCACATAGCTaGTCAGTCTCCTCCTCAGAC +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSVSHS*SVSSSD
Trigger: GTCTGAGGAGGAGACTGAGCAGCTATGTGAGACGCT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAGCGTCTCACATAGCTaGTCAGTCTCCTCCTCAGAC +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSVSHS*SVSSSD
Trigger: GTCTGAGGAGGAGACTGAGCAGCTATGTGAGACGCT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGCATGGGTTCGAGGATaGGGGCCACATCCCCGAGGG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKAWVRG*GPHPRG
Trigger: CCCTCGGGGATGTGGCCCGCATCCTCGAACCCATGC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTCGGCTGAGTTCTCCTaGTTGAGACACTGGATGGAC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSAEFS*LRHWMD
Trigger: GTCCATCCAGTGTCTCAAGCAGGAGAACTCAGCCGA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCTGCAGACTCTGTGTaGTCACTGCTATCCCCGCCA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSADSV*SLLSPP
Trigger: TGGCGGGGATAGCAGTGAGCACACAGAGTCTGCAGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCCTGGGTCTGCAGCTTaGCATAAAAGCTCTGGCCGA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPPGSAA*HKSSGR
Trigger: TCGGCCAGAGCTTTTATGGCAAGCTGCAGACCCAGG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTGGACCTTGCACCTCTaGAGCAGGCTGTGGATGAAC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQWTLHL*SRLWMN
Trigger: GTTCATCCACAGCCTGCTGCAGAGGTGCAAGGTCCA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGCTCCAGATCTGGTCCTaGCCCAGATTGATGAGGCTC +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQLQIWS*PRLMRL
Trigger: GAGCCTCATCAATCTGGGGCAGGACCAGATCTGGAG...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAGCACTGAGTCTGTCTaGAGGGTGCTGAGAGCACAG +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSTESV*RVLRAQ
Trigger: CTGTGCTCTCAGCACCCTGCAGACAGACTCAGTGCT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCACTGAGTCTGTCTaGAGGGTGCTGAGAGCACAG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSTESV*RVLRAQ
Trigger: CTGTGCTCTCAGCACCCTGCAGACAGACTCAGTGCT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCACCTCCTTCACCAGCTaGAGCACTGAGTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPTSFTS*STESVC
Trigger: GCAGACAGACTCAGTGCTGCAGCTGGTGAAGGAGGT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCATCCCCTTTGATCTaGGCTGGCCTCTTCACCACC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSSPLI*AGLFTT
Trigger: GGTGGTGAAGAGGCCAGCGCAGATCAAAGGGGATGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGAAGGGAAGGCCTCCTaGAGGTCTGGTATGGACAGT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPEGKAS*RSGMDS
Trigger: ACTGTCCATACCAGACCTGCAGGAGGCCTTCCCTTC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCACAGCGAGGTCAGGTaGTGGGGAGAGATTCTTAGC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQHSEVR*WGEILS
Trigger: GCTAAGAATCTCTCCCCAGCACCTGACCTCGCTGTG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTGCCTGCAGACCCATTaGCATCAGCAACTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPCLQTH*HQQLGL
Trigger: AAGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCTGTGTCCAGGAACTTaGAGGCAGAGAGGTACATGG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLLCPGT*RQRGTW
Trigger: CCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAG...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTGGAGGGAAGGCAAGTaGTGTGTCCAGGAACTTGCA +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFWREGK*CVQELA
Trigger: TGCAAGTTCCTGGACACAGCACTTGCCTTCCCTCCA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAAGGCAGGGAGGCGGATaGAAGGGCTTGTCAGAACGC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKRQGGG*KGLSER
Trigger: GCGTTCTGACAAGCCCTTCCATCCGCCTCCCTGCCT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTCAGGAGTGTCTGGGTaGCAGCTGAGAGGATGTGCA +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSGVSG*QLRGCA
Trigger: TGCACATCCTCTCAGCTGCCACCCAGACACTCCTGA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGATACACAGGGAAGGTaGCACAGTCCAGCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPDTQGR*HSPAAG
Trigger: ACCTGCTGCTGGACTGTGCCACCTTCCCTGTGTATC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGATACACAGGGAAGGTaGCACAGTCCAGCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQDTQGR*HSPAAG
Trigger: ACCTGCTGCTGGACTGTGCCACCTTCCCTGTGTATC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGCTGGCTCCTGGAGTCTaGAAGAGCGTCTCACATAGC +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQLAPGV*KSVSHS
Trigger: GCTATGTGAGACGCTCTTCCAGACTCCAGGAGCCAG...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGCGAGGGACTGGGAGTaGTTTATCACTTCCAGCAGT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLARDWE*FITSSS
Trigger: ACTGCTGGAAGTGATAAACCACTCCCAGTCCCTCGC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGTCTCCTTGTTCAGCTaGTTCCAGAGCACACGAGCC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPVSLFS*FQSTRA
Trigger: GGCTCGTGTGCTCTGGAACCAGCTGAACAAGGAGAC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AATGGTATCAACTGCCTGATGCAGGAAACTGAATGTTGGCGCAAAAGAGGAAACCGCACCAGCCAGCCCTaGGCTGCTGCACTGATAGCA +
Preference number: 4 (lower is better)
Translates to: NGINCLMQETECWRKRGNRTSQP*AAALIA
Trigger: TGCTATCAGTGCAGCAGCCCAGGGCTGGCTGGTGCG...GTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCACGTCCTCTGGGTTTTaGGCTGGAGCAACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPTSSGF*AGATAG
Trigger: TCCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTGGATGGACGTCCTCTaGGTTTTGGGCTGGAGCAAC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPWMDVL*VLGWSN
Trigger: GTTGCTCCAGCCCAAAACCCAGAGGACGTCCATCCA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTGGATGGACGTCCTCTaGGTTTTGGGCTGGAGCAAC +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQWMDVL*VLGWSN
Trigger: GTTGCTCCAGCCCAAAACCCAGAGGACGTCCATCCA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTCCTGCTTGAGACACTaGATGGACGTCCTCTGGGTT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSCLRH*MDVLWV
Trigger: AACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGAGGTCCTGCAGATCGTaGGAGGGAGATGAGAAAGTG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLRSCRS*EGDEKV
Trigger: CACTTTCTCATCTCCCTCCCACGATCTGCAGGACCT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAGGTCCTGCAGATCGTaGGAGGGAGATGAGAAAGTG +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFRSCRS*EGDEKV
Trigger: CACTTTCTCATCTCCCTCCCACGATCTGCAGGACCT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGCAAGGCCGCTCGCTTaGAGTATGCCCTGCCCCCGA +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKARPLA*SMPCPR
Trigger: TCGGGGGCAGGGCATACTCCAAGCGAGCGGCCTTGC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGCACCAGGCTTAACCTaGCATTGGACCTGGGGCTTT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPAPGLT*HWTWGF
Trigger: AAAGCCCCAGGTCCAATGCCAGGTTAAGCCTGGTGC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGCAGCCTCCTCGTCACTaGAAAACGACTCGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQQPPRH*KTTRKP
Trigger: AGGCTTCCGAGTCGTTTTCCAGTGACGAGGAGGCTG...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCAGCCTCCTCGTCACTaGAAAACGACTCGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPQPPRH*KTTRKP
Trigger: AGGCTTCCGAGTCGTTTTCCAGTGACGAGGAGGCTG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCAGCCTCCTCGTCACTaGAAAACGACTCGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQQPPRH*KTTRKP
Trigger: AGGCTTCCGAGTCGTTTTCCAGTGACGAGGAGGCTG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GCAGGCAGCTGGCTTTGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTGATGTGGTGATGGCTTaGAGCTCCACGTCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: AGSWLWVLKAQFNVVKNGDVVMA*SSTSAS
Trigger: GGAGGCTGACGTGGAGCTCCAAGCCATCACCACATC...ACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CTTCTGGAACAAATGCCCATCTGTAAATCTGAAACAAGGGCATCTTGTCTGGAGAGTGGGGGCAGACATTaGGGGCCTGGGTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: LLEQMPICKSETRASCLESGGRH*GPGSAA
Trigger: AGCTGCAGACCCAGGCCCCCAATGTCTGCCCCCACT...CTCCAGACAAGATGCCCTTGTTTCAGATTTACAGATGGGCATTTGTTCCAGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCAATGAGCAGGGAGTaGGGGCAGACATTGGGGGCC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKSMSRE*GQTLGA
Trigger: GGCCCCCAATGTCTGCCCCCACTCCCTGCTCATTGA...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GCAGGCAGCTGGCTTTGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTCAGCTCGATCTGCAGTaGGTGCTCGCTCCAGATCTG +
Preference number: 4 (lower is better)
Translates to: AGSWLWVLKAQFNVVKNGQLDLQ*VLAPDL
Trigger: CAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTG...ACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAGCACCGATGGCCTGCTaGAAGTTGAGAGCCCTCTGC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKAPMAC*KLRALC
Trigger: GCAGAGGGCTCTCAACTTCCAGCAGGCCATCGGTGC...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCAGAGGATGACCCTTTaGTGGCTCCCAGGAGATCCA +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQQRMTL*WLPGDP
Trigger: TGGATCTCCTGGGAGCCACCAAAGGGTCATCCTCTG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCCCTTTGATCTGCGCTaGCCTCTTCACCACCTCCTT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQPFDLR*PLHHLL
Trigger: AAGGAGGTGGTGAAGAGGCCAGCGCAGATCAAAGGG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACGCCGGCTCGGAAGCTaGGAGCATTGTACGCACTGT +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKRRLGS*EHCTHC
Trigger: ACAGTGCGTACAATGCTCCCAGCTTCCGAGCCGGCG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCTTCCACGCCCGCTTaGTGTAGGCATAGCCACTCA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSSTPA*CRHSHS
Trigger: TGAGTGGCTATGCCTACACCAAGCGGGCGTGGAAGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAGCGAGGTCAGGTGCTaGGGAGAGATTCTTAGCAGC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSEVRC*GEILSS
Trigger: GCTGCTAAGAATCTCTCCCCAGCACCTGACCTCGCT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCACAGCTCTACACAGGTaGTGTGATGTTCACGGGTCT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFTALHR*CDVHGS
Trigger: AGACCCGTGAACATCACATCACCTGTGTAGAGCTGT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAATGGCAAGGAATGCGTaGCCAGGCTCACCCAGGCGG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKMARNA*PGSPRR
Trigger: CCGCCTGGGTGAGCCTGGTCACGCATTCCTTGCCAT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGACCTTCCAGAAGAGTaGGCGGGTAGTCAGGAGAAA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPDLPEE*AGSQEK
Trigger: TTTCTCCTGACTACCCGCTCACTCTTCTGGAAGGTC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAGTAAACAGAGGATaGCCCTTTGGTGGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFKVNRG*PFGGSQ
Trigger: CTGGGAGCCACCAAAGGGTCATCCTCTGTTTACTTT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGCTTCCAGGATTCTCTaGGTGATTTCCTGCAGGTCT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFASRIL*VISCRS
Trigger: AGACCTGCAGGAAATCACTCAGAGAATCCTGGAAGC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCCTCCAGATTTCTGCTaGGCCAGCTTGTTTGTTCCA +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLPPDFC*ASLFVP
Trigger: TGGAACAAACAAGCTGGCTCAGCAGAAATCTGGAGG...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAACGTCTGTCCGACTCTaGGGTTGTCTGTCAGGCGCT +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKTSVRL*GCLSGA
Trigger: AGCGCCTGACAGACAACCTCAGAGTCGGACAGACGT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCATTCTCTTCCAGTTCTaGCAGGAAGGCTGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPILFQF*QEGWVL
Trigger: GAGCACCCAGCCTTCCTGTCAGAACTGGAAGAGAAT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACCCAGCATGCACTTCTaGTCCTTGCCTGGTGAGTCC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKPSMHF*SLPGES
Trigger: GGACTCACCAGGCAAGGAGCAGAAGTGCATGCTGGG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGCAGCTGAGAGGATGTaGACAACATCCCGTCTGAGA +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQAAERM*TTSRLR
Trigger: TCTCAGACGGGATGTTGTGCACATCCTCTCAGCTGC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACAGCCAGCCCTGGGCTaGTGCACTGATAGCACCGTC +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKQPALG*CTDSTV
Trigger: GACGGTGCTATCAGTGCAGCAGCCCAGGGCTGGCTG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCGGCTGAGTTCTCCTaGTTGAGACACTGGATGGAC +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSAEFS*LRHWMD
Trigger: GTCCATCCAGTGTCTCAAGCAGGAGAACTCAGCCGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTCGGCTGAGTTCTCCTaGTTGAGACACTGGATGGAC +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQSAEFS*LRHWMD
Trigger: GTCCATCCAGTGTCTCAAGCAGGAGAACTCAGCCGA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTCCTGCTTCTCCCTCTaGTGCTTCAACAGCCTCGAT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSCFSL*CFNSLD
Trigger: ATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCAGGA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCCTGCTTCTCCCTCTaGTGCTTCAACAGCCTCGAT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSCFSL*CFNSLD
Trigger: ATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCAGGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GCAGGCAGCTGGCTTTGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTCCTGGGTCTGCAGCTTaGCATAAAAGCTCTGGCCGA +
Preference number: 4 (lower is better)
Translates to: AGSWLWVLKAQFNVVKNGPGSAA*HKSSGR
Trigger: TCGGCCAGAGCTTTTATGGCAAGCTGCAGACCCAGG...ACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACGAACTCCTGGACCTTaGACCTCTGCAGCAGGCTGT +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKRTPGP*TSAAGC
Trigger: ACAGCCTGCTGCAGAGGTGCAAGGTCCAGGAGTTCG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATGGGGCTGCACGTACTaGATGGCACCGATGGCCTGC +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKWGCTY*MAPMAC
Trigger: GCAGGCCATCGGTGCCATGCAGTACGTGCAGCCCCA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GCAGGCAGCTGGCTTTGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTGAAGGGAAGGCCTCCTaGAGGTCTGGTATGGACAGT +
Preference number: 4 (lower is better)
Translates to: AGSWLWVLKAQFNVVKNGEGKAS*RSGMDS
Trigger: ACTGTCCATACCAGACCTGCAGGAGGCCTTCCCTTC...ACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAAGCCAGAACCTCTaGCAAGAGAGAGAGCGCTTG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPRSQNL*QERERL
Trigger: CAAGCGCTCTCTCTCTTGGCAGAGGTTCTGGCTTCT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAGAAGCCAGAACCTCTaGCAAGAGAGAGAGCGCTTG +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQRSQNL*QERERL
Trigger: CAAGCGCTCTCTCTCTTGGCAGAGGTTCTGGCTTCT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTCTCTTTCTCGTCGCTaGGGTAAACCATGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSLSRR*GKPCPG
Trigger: TCCTGGACATGGTTTACCGCAGCGACGAGAAAGAGA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCTGTGTCCAGGAACTTaGAGGCAGAGAGGTACATGG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPLCPGT*RQRGTW
Trigger: CCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTGGAGGGAAGGCAAGTaGTGTGTCCAGGAACTTGCA +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQWREGK*CVQELA
Trigger: TGCAAGTTCCTGGACACAGCACTTGCCTTCCCTCCA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCGTGGTTTGTGTCACTaGTCTGAAGCATGCCTCGAA +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLRGLCH*SEACLE
Trigger: TTCGAGGCATGCTTCAGACCAGTGACACAAACCACG...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGAAAACTGCAATCGCTaGCTCCTGGAGTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGENCNR*LLESGR
Trigger: TCTTCCAGACTCCAGGAGCCAGCGATTGCAGTTTTC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTCACTTCCAGCAGTGTaGCGATGGCTATGTTCTGGA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSLPAV*RWLCSG
Trigger: TCCAGAACATAGCCATCGCCACACTGCTGGAAGTGA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGACAAGAGCGAGGGACTaGGAGTGGTTTATCACTTCC +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLTRARD*EWFITS
Trigger: GGAAGTGATAAACCACTCCCAGTCCCTCGCTCTTGT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTCAAAGGAGCGATTGTaGGACGTCACACGACTACCT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSKERL*DVTRLP
Trigger: AGGTAGTCGTGTGACGTCCCACAATCGCTCCTTTGA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AATGGTATCAACTGCCTGATGCAGGAAACTGAATGTTGGCGCAAAAGAGGAAACGCAACAGCAGGAGCATaGGTTCGAGGATGCGGGCCA +
Preference number: 4 (lower is better)
Translates to: NGINCLMQETECWRKRGNATAGA*VRGCGP
Trigger: TGGCCCGCATCCTCGAACCCATGCTCCTGCTGTTGC...GTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAGAGGTCATCCTGTCTaGAAGGTCCACATAGTAGGG +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFRGHPV*KVHIVG
Trigger: CCCTACTATGTGGACCTTCCAGACAGGATGACCTCT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGAGGTCCTGCAGATCGTaGGAGGGAGATGAGAAAGTG +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQRSCRS*EGDEKV
Trigger: CACTTTCTCATCTCCCTCCCACGATCTGCAGGACCT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAATGAGGGCCTCCTGGTaGCGTGCCAGGAGGTTGGAG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKMRASW*RARRLE
Trigger: CTCCAACCTCCTGGCACGCCACCAGGAGGCCCTCAT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAAGCAGGACGAACTCCTaGACCTTGCACCTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKSRTNS*TLHLCS
Trigger: GCTGCAGAGGTGCAAGGTCCAGGAGTTCGTCCTGCT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACGTAGCGCTTCTGGCTaGTGTACATGGACGCGGACA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKRSASG*CTWTRT
Trigger: TGTCCGCGTCCATGTACACCAGCCAGAAGCGCTACG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATGGGAGGTGAGGGGGTaGGGCTGCACGTACTGCATG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKWEVRG*GCTYCM
Trigger: CATGCAGTACGTGCAGCCCCACCCCCTCACCTCCCA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTCCCAGGAGATCCACTaGTCTCTTCTGAGTTTCCTC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSQEIH*SLLSFL
Trigger: GAGGAAACTCAGAAGAGACCAGTGGATCTCCTGGGA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AATGGTATCAACTGCCTGATGCAGGAAACTGAATGTTGGCGCAAAAGAGGAAACCGCCGGCTCGGAAGCTaGGAGCATTGTACGCACTGT +
Preference number: 4 (lower is better)
Translates to: NGINCLMQETECWRKRGNRRLGS*EHCTHC
Trigger: ACAGTGCGTACAATGCTCCCAGCTTCCGAGCCGGCG...GTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp GCAGGCAGCTGGCTTTGGGTTTTGAAAGCACAGTTTAACGTGGTGAAGAATGGTAGCGAGGTCAGGTGCTaGGGAGAGATTCTTAGCAGC +
Preference number: 4 (lower is better)
Translates to: AGSWLWVLKAQFNVVKNGSEVRC*GEILSS
Trigger: GCTGCTAAGAATCTCTCCCCAGCACCTGACCTCGCT...ACCATTCTTCACCACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAAGCAGATACCATGGTaGAGGCTTCAGCAGCACCTG +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQKQIPW*RLQQHL
Trigger: CAGGTGCTGCTGAAGCCTCCACCATGGTATCTGCTT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCGTAGAGTCTTCTGTTaGGAGACATGTCCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGRRVFC*ETCPFS
Trigger: TGAGAAGGGACATGTCTCTCAACAGAAGACTCTACG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTGGCAAAGTTTGCAATaGGCTCCTGGATGCAGAGAA +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFWQSLQ*APGCRE
Trigger: TTCTCTGCATCCAGGAGCTCATTGCAAACTTTGCCA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAGCAGCAAATTGTCATaGGGGATTTCAGCCACGGAG +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSSKLS*GISATE
Trigger: CTCCGTGGCTGAAATCCCTCATGACAATTTGCTGCT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCTGTTTTCTCGGCAATaGCTTTCAGTATCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGLFSRQ*LSVSQE
Trigger: CTCCTGGGATACTGAAAGTCATTGCCGAGAAAACAG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCACAGCTCTACACAGGTaGTGTGATGTTCACGGGTCT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPTALHR*CDVHGS
Trigger: AGACCCGTGAACATCACATCACCTGTGTAGAGCTGT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTGGACACAGCCTCAATaGACTCCTTGGGATTGGTCT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPWTQPQ*TPWDWS
Trigger: AGACCAATCCCAAGGAGTTCATTGAGGCTGTGTCCA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTCCACTGGTCTCTTCTaGGTTTCCTCCTTTCTGAGA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSTGLF*VSSFLR
Trigger: TCTCAGAAAGGAGGAAACTCAGAAGAGACCAGTGGA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAAAGTAAACAGAGGATaGCCCTTTGGTGGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPKVNRG*PFGGSQ
Trigger: CTGGGAGCCACCAAAGGGTCATCCTCTGTTTACTTT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACACCAGCTGCAGCACTaGGTCTGTCTGCAGGGTGCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKHQLQH*VCLQGA
Trigger: AGCACCCTGCAGACAGACTCAGTGCTGCAGCTGGTG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AAGTGCTGTGTCCAGGAACTTGCAGGCAGAGAGGTACATGGTGAGATCGCTGGGAGTCATTCAACATGCTaGGAAGCAGAAAGTATCCAG +
Preference number: 4 (lower is better)
Translates to: KCCVQELAGREVHGEIAGSHSTC*EAESIQ
Trigger: CTGGATACTTTCTGCTTCTCAGCATGTTGAATGACT...CCCAGCGATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGCAAGACGTATCCATCTaGAAGAAAGCGGGGTCCAAG +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQQDVSI*KKAGSK
Trigger: CTTGGACCCCGCTTTCTTTCAGATGGATACGTCTTG...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGGTCAAGCTCGCCACTaGAGACGGCAAAAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKGQARH*RRQKPG
Trigger: GCCAGGCTTTTGCCGTCTTCAGTGGCGAGCTTGACC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGAAGTTCTAGAATCCTaGCAGTGTGAGGCCTGCATT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLEVLES*QCEACI
Trigger: AATGCAGGCCTCACACTGTCAGGATTCTAGAACTTC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGCCTGATGCAGGAAACTaGATGTTGGCGCAAAAGAGG +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQPDAGN*MLAQKR
Trigger: CCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGG...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCCTGATGCAGGAAACTaGATGTTGGCGCAAAAGAGG +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQPDAGN*MLAQKR
Trigger: CCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTCTAAGAACTTCTGGTaGAGTATCTCAGCCAGAGCC +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSKNFW*SISARA
Trigger: GGCTCTGGCTGAGATACTGCACCAGAAGTTCTTAGA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCCTTGCTGGCAAAGTTTaGAATGAGCTCCTGGATGCA +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFLAGKV*NELLDA
Trigger: TGCATCCAGGAGCTCATTGCAAACTTTGCCAGCAAG...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATGCCAGGGTGCTCGGTaGTCTGTGTCTGGCCCTTGT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKCQGAR*SVSGPC
Trigger: ACAAGGGCCAGACACAGAGCACCGAGCACCCTGGCA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACCAGCCCTGGGCTGCTaGACTGATAGCACCGTCTGT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKPALGC*TDSTVC
Trigger: ACAGACGGTGCTATCAGTGCAGCAGCCCAGGGCTGG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTTCTGGAACAAATGCCCATCTGTAAATCTGAAACAAGGGCATCTTGTCTGGAGTTGAGCAGCTCGATCTaGAGTGGGTGCTCGCTCCAG +
Preference number: 4 (lower is better)
Translates to: LLEQMPICKSETRASCLELSSSI*SGCSLQ
Trigger: CTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAA...CTCCAGACAAGATGCCCTTGTTTCAGATTTACAGATGGGCATTTGTTCCAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAAGGACGATGAGGGCCTaGAGCAGCTTGAGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKRTMRA*SSLSSS
Trigger: CGAGCTGCTCAAGCTGCTGCAGGCCCTCATCGTCCT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAACCTCCTTCACCAGCTaGAGCACTGAGTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKTSFTS*STESVC
Trigger: GCAGACAGACTCAGTGCTGCAGCTGGTGAAGGAGGT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTTCTGGAACAAATGCCCATCTGTAAATCTGAAACAAGGGCATCTTGTCTGGAGGCTTCAGCAGCACTGTaGACGTCGTCCTCGGCATCT +
Preference number: 4 (lower is better)
Translates to: LLEQMPICKSETRASCLEASAAL*TSSSAS
Trigger: AGATGCCGAGGACGACGTGCACAGTGCTGCTGAAGC...CTCCAGACAAGATGCCCTTGTTTCAGATTTACAGATGGGCATTTGTTCCAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTCTCTTTCTCGTCGCTaGGGTAAACCATGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSLSRR*GKPCPG
Trigger: TCCTGGACATGGTTTACCGCAGCGACGAGAAAGAGA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTGTACGCACTGTGATTaGGCAGGTAAGGAAACACGT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFCTHCD*AGKETR
Trigger: ACGTGTTTCCTTACCTGCGCAATCACAGTGCGTACA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACACAGCGAGGTCAGGTaGTGGGGAGAGATTCTTAGC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKHSEVR*WGEILS
Trigger: GCTAAGAATCTCTCCCCAGCACCTGACCTCGCTGTG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGATCTGCCCATTCGCTaGAGGACTCAAAGTTTCTCA +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLDLPIR*RTQSFS
Trigger: TGAGAAACTTTGAGTCCTCCAGCGAATGGGCAGATC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGAGTCCCTGCTGATGTaGTTCACCACAAATAAGGAG +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGESLLM*FTTNKE
Trigger: CTCCTTATTTGTGGTGAACCACATCAGCAGGGACTC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGCGTCTAAGAACTTCTaGTGCAGTATCTCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLASKNF*CSISAR
Trigger: TCTGGCTGAGATACTGCACCAGAAGTTCTTAGACGC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTTCTTCCTTTTACTaGACTCGAGTTCCCGCTGCT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLVSSFY*TRVPAA
Trigger: AGCAGCGGGAACTCGAGTCCAGTAAAAGGAAGAAAC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTAGCATCTGTTTAAACTaGGGCACGGTGATGGGCTTA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSICLN*GTVMGL
Trigger: TAAGCCCATCACCGTGCCCCAGTTTAAACAGATGCT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACTGGCTCCTGGAGTCTaGAAGAGCGTCTCACATAGC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKLAPGV*KSVSHS
Trigger: GCTATGTGAGACGCTCTTCCAGACTCCAGGAGCCAG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGAAAACTGCAATCGCTaGCTCCTGGAGTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQENCNR*LLESGR
Trigger: TCTTCCAGACTCCAGGAGCCAGCGATTGCAGTTTTC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCACTTCCAGCAGTGTaGCGATGGCTATGTTCTGGA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSLPAV*RWLCSG
Trigger: TCCAGAACATAGCCATCGCCACACTGCTGGAAGTGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAGGGTCCAGGAGGGCATaGCAGATGATATCCTCACAG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKGSRRA*QMISSQ
Trigger: CTGTGAGGATATCATCTGCCATGCCCTCCTGGACCC...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTCAAAGGAGCGATTGTaGGACGTCACACGACTACCT +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQSKERL*DVTRLP
Trigger: AGGTAGTCGTGTGACGTCCCACAATCGCTCCTTTGA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAACGTCCTCTGGGTTTTaGGCTGGAGCAACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKTSSGF*AGATAG
Trigger: TCCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTGGGCATTTCTCTaGTTCCTTCTCTACTTCAGC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGWWAFL*FLLYFS
Trigger: GCTGAAGTAGAGAAGGAACCAGAGAAATGCCCACCA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGAGAGGTCATCCTGTCTaGAAGGTCCACATAGTAGGG +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQRGHPV*KVHIVG
Trigger: CCCTACTATGTGGACCTTCCAGACAGGATGACCTCT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATCAATGAGCAGGGAGTaGGGGCAGACATTGGGGGCC +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSMSRE*GQTLGA
Trigger: GGCCCCCAATGTCTGCCCCCACTCCCTGCTCATTGA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTTCTGGAACAAATGCCCATCTGTAAATCTGAAACAAGGGCATCTTGTCTGGAGCGTAGCGCTTCTGGCTaGTGTACATGGACGCGGACA +
Preference number: 4 (lower is better)
Translates to: LLEQMPICKSETRASCLERSASG*CTWTRT
Trigger: TGTCCGCGTCCATGTACACCAGCCAGAAGCGCTACG...CTCCAGACAAGATGCCCTTGTTTCAGATTTACAGATGGGCATTTGTTCCAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGCACCGATGGCCTGCTaGAAGTTGAGAGCCCTCTGC +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKAPMAC*KLRALC
Trigger: GCAGAGGGCTCTCAACTTCCAGCAGGCCATCGGTGC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTCCCAGGAGATCCACTaGTCTCTTCTGAGTTTCCTC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSQEIH*SLLSFL
Trigger: GAGGAAACTCAGAAGAGACCAGTGGATCTCCTGGGA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAATCTTGGTCTTGCTGTaGCGCCGTGCCTGCTTTCTG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKILVLL*RRACFL
Trigger: CAGAAAGCAGGCACGGCGCCACAGCAAGACCAAGAT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAAGGAGGAGCCAGCGATaGTACCTACAGCTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKRRSQR*YLQLPG
Trigger: TCCTGGAAGCTGTAGGTACCATCGCTGGCTCCTCCT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGAAGCAGATACCATGGTaGAGGCTTCAGCAGCACTGT +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQKQIPW*RLQQHC
Trigger: ACAGTGCTGCTGAAGCCTCCACCATGGTATCTGCTT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAAGCAGATACCATGGTaGAGGCTTCAGCAGCACTGT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQKQIPW*RLQQHC
Trigger: ACAGTGCTGCTGAAGCCTCCACCATGGTATCTGCTT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGCAGGCAGCTGGCTTTaGGTTTTGAAAGCACAGTTT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLAGSWL*VLKAQF
Trigger: AAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCGCCTTCTCGATTACTaGGGAGTAGCTTCTGTATCT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPRLLDY*GVASVS
Trigger: AGATACAGAAGCTACTCCTCAGTAATCGAGAAGGCG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCGTCTTCACAATCTCTaGGGCGTGTCTGTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGRLHNL*GVSVFF
Trigger: AAAGAAAACAGACACGCCTCAGAGATTGTGAAGACG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTGGCAAAGTTTGCAATaGGCTCCTGGATGCAGAGAA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPWQSLQ*APGCRE
Trigger: TTCTCTGCATCCAGGAGCTCATTGCAAACTTTGCCA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAGGAGGGCATGGCAGATaGTATCCTCACAGATGTTGG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKGGHGR*YPHRCW
Trigger: CCAACATCTGTGAGGATATCATCTGCCATGCCCTCC...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAAGCCTGTGTCTTGTCTaGGTCTGCTCGCACCAGGCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSLCLV*VCSHQA
Trigger: AGCCTGGTGCGAGCAGACTCAGACAAGACACAGGCT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAGACCTTCCAGAAGAGTaGGCGGGTAGTCAGGAGAAA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKDLPEE*AGSQEK
Trigger: TTTCTCCTGACTACCCGCTCACTCTTCTGGAAGGTC...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAACTTCTCATCCCCTTTaGTCTGCGCTGGCCTCTTCA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKTSHPL*SALASS
Trigger: TGAAGAGGCCAGCGCAGATCAAAGGGGATGAGAAGT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTGGACAGTCTTTGGATaGAAGCATAGCAGAACTGCA +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLWTVFG*KHSRTA
Trigger: TGCAGTTCTGCTATGCTTTCATCCAAAGACTGTCCA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAACGTCTGTCCGACTCTaGGGTTGTCTGTCAGGCGCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKTSVRL*GCLSGA
Trigger: AGCGCCTGACAGACAACCTCAGAGTCGGACAGACGT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAACCCCATTCGGTTGCTaGCTTCCTGTGTGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKTPFGC*LPVWAA
Trigger: AGCAGCCCACACAGGAAGGCAGCAACCGAATGGGGT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATGCTTCTCCCTCTGCTaGTTCAACAGCCTCGATGTG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKCFSLC*FNSLDV
Trigger: CACATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCA...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AATGGTATCAACTGCCTGATGCAGGAAACTGAATGTTGGCGCAAAAGAGGAAACAGCACTGAGTCTGTCTaGAGGGTGCTGAGAGCACAG +
Preference number: 4 (lower is better)
Translates to: NGINCLMQETECWRKRGNSTESV*RVLRAQ
Trigger: CTGTGCTCTCAGCACCCTGCAGACAGACTCAGTGCT...GTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGCTTCAGCAGCACTGTaGACGTCGTCCTCGGCATCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKASAAL*TSSSAS
Trigger: AGATGCCGAGGACGACGTGCACAGTGCTGCTGAAGC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTTTGCACAAGAACATTaGCGTCTAGCAGTGAAGCAC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGFAQEH*RLAVKH
Trigger: GTGCTTCACTGCTAGACGCCAATGTTCTTGTGCAAA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGCGTCTAAGAACTTCTaGTGCAGTATCTCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPASKNF*CSISAR
Trigger: TCTGGCTGAGATACTGCACCAGAAGTTCTTAGACGC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGTTTCTTCCTTTTACTaGACTCGAGTTCCCGCTGCT +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQVSSFY*TRVPAA
Trigger: AGCAGCGGGAACTCGAGTCCAGTAAAAGGAAGAAAC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGGTCTTCAGACTTCAGTaGAGGAAAGGAAGGTTCCTC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQVFRLQ*RKGRFL
Trigger: GAGGAACCTTCCTTTCCTCCACTGAAGTCTGAAGAC...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCATCTGTTTAAACTaGGGCACGGTGATGGGCTTA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSICLN*GTVMGL
Trigger: TAAGCCCATCACCGTGCCCCAGTTTAAACAGATGCT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTGGTGGGCATTTCTCTaGTTCCTTCTCTACTTCAGC +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQWWAFL*FLLYFS
Trigger: GCTGAAGTAGAGAAGGAACCAGAGAAATGCCCACCA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAACCTGGCATTGGACCTaGGGCTTTCTGGCTGGAAGG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKTWHWT*GFLAGR
Trigger: CCTTCCAGCCAGAAAGCCCCAGGTCCAATGCCAGGT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTTCTGGAACAAATGCCCATCTGTAAATCTGAAACAAGGGCATCTTGTCTGGAGGGCTTAACCTGGCATTaGACCTGGGGCTTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: LLEQMPICKSETRASCLEGLTWH*TWGFLA
Trigger: AGCCAGAAAGCCCCAGGTCCAATGCCAGGTTAAGCC...CTCCAGACAAGATGCCCTTGTTTCAGATTTACAGATGGGCATTTGTTCCAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACAGCTCGATCTGCAGTaGGTGCTCGCTCCAGATCTG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKQLDLQ*VLAPDL
Trigger: CAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGAGACTTTCCAAAGTATaGCAAGGAATGCGTGACCAG +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLRLSKV*QGMRDQ
Trigger: CTGGTCACGCATTCCTTGCCATACTTTGGAAAGTCT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCTCAGTGTCCACTTCTaGAACAAATGCCCATCTGTA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGLSVHF*NKCPSV
Trigger: TACAGATGGGCATTTGTTCCAGAAGTGGACACTGAG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGGCAGGCAGCTGGCTTTaGGTTTTGAAAGCACAGTTT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQAGSWL*VLKAQF
Trigger: AAACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGC...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTGGACAGTCTTTGGATaGAAGCATAGCAGAACTGCA +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQWTVFG*KHSRTA
Trigger: TGCAGTTCTGCTATGCTTTCATCCAAAGACTGTCCA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTAGTCATTCAACATGCTaGGAAGCAGAAAGTATCCAG +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSHSTC*EAESIQ
Trigger: CTGGATACTTTCTGCTTCTCAGCATGTTGAATGACT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACCTCCAGATTTCTGCTaGGCCAGCTTGTTTGTTCCA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKPPDFC*ASLFVP
Trigger: TGGAACAAACAAGCTGGCTCAGCAGAAATCTGGAGG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACAAGACGTATCCATCTaGAAGAAAGCGGGGTCCAAG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKQDVSI*KKAGSK
Trigger: CTTGGACCCCGCTTTCTTTCAGATGGATACGTCTTG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGAACATGGTTTTCTCGTaGGTCAGGAGATGGTCAATG +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQNMVFS*VRRWSM
Trigger: CATTGACCATCTCCTGACTCACGAGAAAACCATGTT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAACATGGTTTTCTCGTaGGTCAGGAGATGGTCAATG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPNMVFS*VRRWSM
Trigger: CATTGACCATCTCCTGACTCACGAGAAAACCATGTT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTATTTCTCGTGTCAGGTaGCAGATCACAGAAAACCTA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGISRVR*QITENL
Trigger: TAGGTTTTCTGTGATCTGGCACCTGACACGAGAAAT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCATTTCTCGTGTCAGGTaGCAGATCACAGAAAACCTA +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFISRVR*QITENL
Trigger: TAGGTTTTCTGTGATCTGGCACCTGACACGAGAAAT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATCTGCAGACTCTGTGTaGTCACTGCTATCCCCGCCA +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSADSV*SLLSPP
Trigger: TGGCGGGGATAGCAGTGAGCACACAGAGTCTGCAGA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AATGGTATCAACTGCCTGATGCAGGAAACTGAATGTTGGCGCAAAAGAGGAAACTGCTTCTCCCTCTGCTaGTTCAACAGCCTCGATGTG +
Preference number: 4 (lower is better)
Translates to: NGINCLMQETECWRKRGNCFSLC*FNSLDV
Trigger: CACATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCA...GTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACTCCAGATCTGGTCCTaGCCCAGATTGATGAGGCTC +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKLQIWS*PRLMRL
Trigger: GAGCCTCATCAATCTGGGGCAGGACCAGATCTGGAG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATCATCCCCTTTGATCTaGGCTGGCCTCTTCACCACC +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSSPLI*AGLFTT
Trigger: GGTGGTGAAGAGGCCAGCGCAGATCAAAGGGGATGA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTTTGCACAAGAACATTaGCGTCTAGCAGTGAAGCAC +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQFAQEH*RLAVKH
Trigger: GTGCTTCACTGCTAGACGCCAATGTTCTTGTGCAAA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCAAAGGAGCGATTGTaGGACGTCACACGACTACCT +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKSKERL*DVTRLP
Trigger: AGGTAGTCGTGTGACGTCCCACAATCGCTCCTTTGA...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAGGGAGATGAGAAAGTaGATGTGTTCTCACTGTCAG +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQREMRK*MCSHCQ
Trigger: CTGACAGTGAGAACACATCCACTTTCTCATCTCCCT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGGGAGATGAGAAAGTaGATGTGTTCTCACTGTCAG +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPREMRK*MCSHCQ
Trigger: CTGACAGTGAGAACACATCCACTTTCTCATCTCCCT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACAGCAGTTTTCCTCGTaGCTCAGGTCCTGCAGATCG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKQQFSS*LRSCRS
Trigger: CGATCTGCAGGACCTGAGCCACGAGGAAAACTGCTG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGGCTTAACCTGGCATTaGACCTGGGGCTTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKGLTWH*TWGFLA
Trigger: AGCCAGAAAGCCCCAGGTCCAATGCCAGGTTAAGCC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGCACCAGGCTTAACCTaGCATTGGACCTGGGGCTTT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKAPGLT*HWTWGF
Trigger: AAAGCCCCAGGTCCAATGCCAGGTTAAGCCTGGTGC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTCTTGCTTTCCAGGTTaGGTGTTCTTGTCACAAAGT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSCFPG*VFLSQS
Trigger: ACTTTGTGACAAGAACACCCAACCTGGAAAGCAAGA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTCTTGCTTTCCAGGTTaGGTGTTCTTGTCACAAAGT +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSCFPG*VFLSQS
Trigger: ACTTTGTGACAAGAACACCCAACCTGGAAAGCAAGA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAAGGAGGAGCCAGCGATaGTACCTACAGCTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKRRSQR*YLQLPG
Trigger: TCCTGGAAGCTGTAGGTACCATCGCTGGCTCCTCCT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCCTTCTGCTCAAAGCTaGAGAAGAGTTTTAAGGAAC +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLPSAQS*RRVLRN
Trigger: GTTCCTTAAAACTCTTCTCCAGCTTTGAGCAGAAGG...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCCTTCTGCTCAAAGCTaGAGAAGAGTTTTAAGGAAC +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGPSAQS*RRVLRN
Trigger: GTTCCTTAAAACTCTTCTCCAGCTTTGAGCAGAAGG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTATTGCCATCAGCAACTaGGGCTTTTATTCTGTTGCT +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGIAISN*GFYSVA
Trigger: AGCAACAGAATAAAAGCCCCAGTTGCTGATGGCAAT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCTCAGTGTCCACTTCTaGAACAAATGCCCATCTGTA +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQLSVHF*NKCPSV
Trigger: TACAGATGGGCATTTGTTCCAGAAGTGGACACTGAG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACGTAGAGTCTTCTGTTaGGAGACATGTCCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKRRVFC*ETCPFS
Trigger: TGAGAAGGGACATGTCTCTCAACAGAAGACTCTACG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATCATCTTGTCTTCGATaGCAAGAGCGAGGGACTGGG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSSCLR*QERGTG
Trigger: CCCAGTCCCTCGCTCTTGTCATCGAAGACAAGATGA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACTGTTTTCTCGGCAATaGCTTTCAGTATCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKLFSRQ*LSVSQE
Trigger: CTCCTGGGATACTGAAAGTCATTGCCGAGAAAACAG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AATGGTATCAACTGCCTGATGCAGGAAACTGAATGTTGGCGCAAAAGAGGAAACTGGACACAGCCTCAATaGACTCCTTGGGATTGGTCT +
Preference number: 4 (lower is better)
Translates to: NGINCLMQETECWRKRGNWTQPQ*TPWDWS
Trigger: AGACCAATCCCAAGGAGTTCATTGAGGCTGTGTCCA...GTTTCCTCTTTTGCGCCAACATTCAGTTTCCTGCATCAGGCAGTTGATACCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATCAATTCAGACACCATaGTGGGCCACAGCGAGGTCA +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSIQTP*WATARS
Trigger: TGACCTCGCTGTGGCCCATCATGGTGTCTGAATTGA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTTTGTGGCTGTTTCTTaGTTCATCTTCCTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFFVAVS*FIFLFQ
Trigger: CTGAAAGAGGAAGATGAATCAAGAAACAGCCACAAA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCATGGTATCAACTGCCTaGTGCAGGAAACTGAATGTT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPMVSTA*CRKLNV
Trigger: AACATTCAGTTTCCTGCATCAGGCAGTTGATACCAT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGATGGTATCAACTGCCTaGTGCAGGAAACTGAATGTT +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQMVSTA*CRKLNV
Trigger: AACATTCAGTTTCCTGCATCAGGCAGTTGATACCAT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACTTGCTGGCAAAGTTTaGAATGAGCTCCTGGATGCA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKLAGKV*NELLDA
Trigger: TGCATCCAGGAGCTCATTGCAAACTTTGCCAGCAAG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATGCTTCTCCCTCTGCTaGTTCAACAGCCTCGATGTG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKCFSLC*FNSLDV
Trigger: CACATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATCCTGCTTCTCCCTCTaGTGCTTCAACAGCCTCGAT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSCFSL*CFNSLD
Trigger: ATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCAGGA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAACAAGAACAAGTCCTTaGCCAGCCATTTGGTTCCCA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKTRTSP*PAIWFP
Trigger: TGGGAACCAAATGGCTGGCCAAGGACTTGTTCTTGT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAGTCTTCAGACTTCAGTaGAGGAAAGGAAGGTTCCTC +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKVFRLQ*RKGRFL
Trigger: GAGGAACCTTCCTTTCCTCCACTGAAGTCTGAAGAC...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTTCTGGAACAAATGCCCATCTGTAAATCTGAAACAAGGGCATCTTGTCTGGAGTCACTTCCAGCAGTGTaGCGATGGCTATGTTCTGGA +
Preference number: 4 (lower is better)
Translates to: LLEQMPICKSETRASCLESLPAV*RWLCSG
Trigger: TCCAGAACATAGCCATCGCCACACTGCTGGAAGTGA...CTCCAGACAAGATGCCCTTGTTTCAGATTTACAGATGGGCATTTGTTCCAGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATCCTGCTTGAGACACTaGATGGACGTCCTCTGGGTT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSCLRH*MDVLWV
Trigger: AACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp ACACCCTGCCTGCAGACCCATTGCCATCAGCAACTGGGGCTTTTATTCTGTTGCTCCAAAAGACAAAAATaGCTAATGGTCGTAAGACCT +
Preference number: 4 (lower is better)
Translates to: TPCLQTHCHQQLGLLFCCSKRQK*LMVVRP
Trigger: AGGTCTTACGACCATTAGCCATTTTTGTCTTTTGGA...GCAACAGAATAAAAGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAGGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGTAGCTCTTCCAAAATaGCGTTCTTGGCATTTCTCA +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQVALPK*RSWHFS
Trigger: TGAGAAATGCCAAGAACGCCATTTTGGAAGAGCTAC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCAGGAAACTGAATGTTaGCGCAAAAGAGGAAACTCT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPQETEC*RKRGNS
Trigger: AGAGTTTCCTCTTTTGCGCCAACATTCAGTTTCCTG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCGTGTCTGTTTTCTTTaGTTGTGCTTATTAGTGGAT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLRVCFL*LCLLVD
Trigger: ATCCACTAATAAGCACAATCAAAGAAAACAGACACG...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAAGCAGCAAATTGTCATaGGGGATTTCAGCCACGGAG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSSKLS*GISATE
Trigger: CTCCGTGGCTGAAATCCCTCATGACAATTTGCTGCT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATGGACACAGCCTCAATaGACTCCTTGGGATTGGTCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKWTQPQ*TPWDWS
Trigger: AGACCAATCCCAAGGAGTTCATTGAGGCTGTGTCCA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATGGACAGTCTTTGGATaGAAGCATAGCAGAACTGCA +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKWTVFG*KHSRTA
Trigger: TGCAGTTCTGCTATGCTTTCATCCAAAGACTGTCCA...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGCTTCCAGGATTCTCTaGGTGATTTCCTGCAGGTCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKASRIL*VISCRS
Trigger: AGACCTGCAGGAAATCACTCAGAGAATCCTGGAAGC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTCCAGGTTATTTCTTTaGACAAGAACATTGGCGTCT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPSRLFL*TRTLAS
Trigger: AGACGCCAATGTTCTTGTGCAAAGAAATAACCTGGA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTCCAGGTTATTTCTTTaGACAAGAACATTGGCGTCT +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSRLFL*TRTLAS
Trigger: AGACGCCAATGTTCTTGTGCAAAGAAATAACCTGGA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAAGCAGCATGGCCTTCTaGTCAAAGCTGGAGAAGAGT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSSMAF*SKLEKS
Trigger: ACTCTTCTCCAGCTTTGAGCAGAAGGCCATGCTGCT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGGGGCTTTTATTCTGTTaGTTTTGTGGCTGTTTCTTG +
Preference number: 4 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQGLLFC*FCGCFL
Trigger: CAAGAAACAGCCACAAAAGCAACAGAATAAAAGCCC...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCCACTTCTGGAACAAATaGCCATCTGTAAATCTGAAA +
Preference number: 4 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFHFWNK*PSVNLK
Trigger: TTTCAGATTTACAGATGGGCATTTGTTCCAGAAGTG...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCACTTCTGGAACAAATaGCCATCTGTAAATCTGAAA +
Preference number: 4 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGHFWNK*PSVNLK
Trigger: TTTCAGATTTACAGATGGGCATTTGTTCCAGAAGTG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACGTGGTTTGTGTCACTaGTCTGAAGCATGCCTCGAA +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKRGLCH*SEACLE
Trigger: TTCGAGGCATGCTTCAGACCAGTGACACAAACCACG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAACAAGAGCGAGGGACTaGGAGTGGTTTATCACTTCC +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKTRARD*EWFITS
Trigger: GGAAGTGATAAACCACTCCCAGTCCCTCGCTCTTGT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAAGACTTTCCAAAGTATaGCAAGGAATGCGTGACCAG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKRLSKV*QGMRDQ
Trigger: CTGGTCACGCATTCCTTGCCATACTTTGGAAAGTCT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTCCAAAAGACAAAAATaGCTAATGGTCGTAAGACCT +
Preference number: 4 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSKRQK*LMVVRP
Trigger: AGGTCTTACGACCATTAGCCATTTTTGTCTTTTGGA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCGTGTCTGTTTTCTTTaGTTGTGCTTATTAGTGGAT +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPRVCFL*LCLLVD
Trigger: ATCCACTAATAAGCACAATCAAAGAAAACAGACACG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACTGTTTTCTCGGCAATaGCTTTCAGTATCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKLFSRQ*LSVSQE
Trigger: CTCCTGGGATACTGAAAGTCATTGCCGAGAAAACAG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAATGTTTTCCTTCTTTaGGGTTGTACTGATGGTGAA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPNVFLL*GCTDGE
Trigger: TTCACCATCAGTACAACCTCAAAGAAGGAAAACATT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATCCACTGGTCTCTTCTaGGTTTCCTCCTTTCTGAGA +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSTGLF*VSSFLR
Trigger: TCTCAGAAAGGAGGAAACTCAGAAGAGACCAGTGGA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATCTAAGAACTTCTGGTaGAGTATCTCAGCCAGAGCC +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSKNFW*SISARA
Trigger: GGCTCTGGCTGAGATACTGCACCAGAAGTTCTTAGA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGATTCACTTTCATATTaGTTGACCAGATCGTCCAAA +
Preference number: 4 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPDSLSY*LTRSSK
Trigger: TTTGGACGATCTGGTCAAGCAATATGAAAGTGAATC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGATTCACTTTCATATTaGTTGACCAGATCGTCCAAA +
Preference number: 4 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQDSLSY*LTRSSK
Trigger: TTTGGACGATCTGGTCAAGCAATATGAAAGTGAATC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATGTACGCACTGTGATTaGGCAGGTAAGGAAACACGT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKCTHCD*AGKETR
Trigger: ACGTGTTTCCTTACCTGCGCAATCACAGTGCGTACA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGAGTCCCTGCTGATGTaGTTCACCACAAATAAGGAG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKESLLM*FTTNKE
Trigger: CTCCTTATTTGTGGTGAACCACATCAGCAGGGACTC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACGTCTTCACAATCTCTaGGGCGTGTCTGTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKRLHNL*GVSVFF
Trigger: AAAGAAAACAGACACGCCTCAGAGATTGTGAAGACG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATTTGTGGCTGTTTCTTaGTTCATCTTCCTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKFVAVS*FIFLFQ
Trigger: CTGAAAGAGGAAGATGAATCAAGAAACAGCCACAAA...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAAGGGAGATGAGAAAGTaGATGTGTTCTCACTGTCAG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKREMRK*MCSHCQ
Trigger: CTGACAGTGAGAACACATCCACTTTCTCATCTCCCT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAGGAAGAAAAACAGGATaGTCTCCAGGTTATTTCTTT +
Preference number: 4 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKGRKTG*SPGYFF
Trigger: AAAGAAATAACCTGGAGATCATCCTGTTTTTCTTCC...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR TCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAAGTCATTCAACATGCTaGGAAGCAGAAAGTATCCAG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSHSTC*EAESIQ
Trigger: CTGGATACTTTCTGCTTCTCAGCATGTTGAATGACT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAATTTCTCGTGTCAGGTaGCAGATCACAGAAAACCTA +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKISRVR*QITENL
Trigger: TAGGTTTTCTGTGATCTGGCACCTGACACGAGAAAT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAATTGCCATCAGCAACTaGGGCTTTTATTCTGTTGCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKIAISN*GFYSVA
Trigger: AGCAACAGAATAAAAGCCCCAGTTGCTGATGGCAAT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACAGGAAACTGAATGTTaGCGCAAAAGAGGAAACTCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKQETEC*RKRGNS
Trigger: AGAGTTTCCTCTTTTGCGCCAACATTCAGTTTCCTG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
3UTR CAA 72 bp TTGCCATCAGCAACTGGGGCTTTTATTCTGTTGCTTTaGTGGCTGTTTCTTGATTCATCTTCCTCTTTCAGA +
Preference number: 4 (lower is better)
Translates to: LPSATGAFILLL*WLFLDSSSSFR
Trigger: TCTGAAAGAGGAAGATGAATCAAGAAACAGCCACAAAAGCAACAGAATAAAAGCCCCAGTTGCTGATGGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR GCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGGGCTTTTATTCTGTTaGTTTTGTGGCTGTTTCTTG +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKGLLFC*FCGCFL
Trigger: CAAGAAACAGCCACAAAAGCAACAGAATAAAAGCCC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CCA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATCCAAAAGACAAAAATaGCTAATGGTCGTAAGACCT +
Preference number: 4 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSKRQK*LMVVRP
Trigger: AGGTCTTACGACCATTAGCCATTTTTGTCTTTTGGA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 90 bp GCCTGCCGCCCCGGTCGGCGGTGGCCAGGCCGTAGCGCTTCTGGCTaGTGTACATGGACGCGGACAGCGAGAGCAGGACGAACTCCTGGA +
Preference number: 5 (lower is better)
Translates to: ACRPGRRWPGRSASG*CTWTRTARAGRTPG
Trigger: TCCAGGAGTTCGTCCTGCTCTCGCTGTCCGCGTCCATGTACACCAGCCAGAAGCGCTACGGCCTGGCCACCGCCGACCGGGGCGGCAGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp CAAAGAGGCTGTCCTCCGCGAGGAGCCTGCCGCCCCGGTCGGCGGTaGCCAGGCCGTAGCGCTTCTGGCTGGTGTACATGGACGCGGACA +
Preference number: 5 (lower is better)
Translates to: QRGCPPRGACRPGRR*PGRSASGWCTWTRT
Trigger: TGTCCGCGTCCATGTACACCAGCCAGAAGCGCTACGGCCTGGCCACCGCCGACCGGGGCGGCAGGCTCCTCGCGGAGGACAGCCTCTTTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 90 bp TGCTGGAAGTTGAGAGCCCTCTGCCACTCTCGGGATAGGGCCGGCTaGGTCTCCGCCTCCTCCTGGCCCTGGCCCAGGTGGTGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: CWKLRALCHSRDRAG*VSASSWPWPRWCSR
Trigger: CCTGGAGCACCACCTGGGCCAGGGCCAGGAGGAGGCGGAGACTCAGCCGGCCCTATCCCGAGAGTGGCAGAGGGCTCTCAACTTCCAGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp CCCGGTCGGCGGTGGCCAGGCCGTAGCGCTTCTGGCTGGTGTACATaGACGCGGACAGCGAGAGCAGGACGAACTCCTGGACCTTGCACC +
Preference number: 5 (lower is better)
Translates to: PGRRWPGRSASGWCT*TRTARAGRTPGPCT
Trigger: GGTGCAAGGTCCAGGAGTTCGTCCTGCTCTCGCTGTCCGCGTCCATGTACACCAGCCAGAAGCGCTACGGCCTGGCCACCGCCGACCGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp GGCACGGTGATGGGCTTAGGGTCCCAGGAGCTCTTCCTGCCAGGGTaGTCGGTGCTCTGTGTCTGGCCCTTGTTGCCCTTCCCTGGGGGC +
Preference number: 5 (lower is better)
Translates to: GTVMGLGSQELFLPG*SVLCVWPLLPFPGG
Trigger: GCCCCCAGGGAAGGGCAACAAGGGCCAGACACAGAGCACCGAGCACCCTGGCAGGAAGAGCTCCTGGGACCCTAAGCCCATCACCGTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 90 bp GGCCACATCCCCGAGGGAGAGCGCTCGCACCAGCCAGCCCTGGGCTaGTGCACTGATAGCACCGTCTGTGCAAGCCAGGCTATCCAGGAC +
Preference number: 5 (lower is better)
Translates to: GHIPEGERSHQPALG*CTDSTVCASQAIQD
Trigger: GTCCTGGATAGCCTGGCTTGCACAGACGGTGCTATCAGTGCAGCAGCCCAGGGCTGGCTGGTGCGAGCGCTCTCCCTCGGGGATGTGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp GAGGTGAGGGGGTGGGGCTGCACGTACTGCATGGCACCGATGGCCTaGTGGAAGTTGAGAGCCCTCTGCCACTCTCGGGATAGGGCCGGC +
Preference number: 5 (lower is better)
Translates to: EVRGWGCTYCMAPMA*WKLRALCHSRDRAG
Trigger: GCCGGCCCTATCCCGAGAGTGGCAGAGGGCTCTCAACTTCCAGCAGGCCATCGGTGCCATGCAGTACGTGCAGCCCCACCCCCTCACCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp ATGCGGGCCACATCCCCGAGGGAGAGCGCTCGCACCAGCCAGCCCTaGGCTGCTGCACTGATAGCACCGTCTGTGCAAGCCAGGCTATCC +
Preference number: 5 (lower is better)
Translates to: MRATSPRESARTSQP*AAALIAPSVQARLS
Trigger: GGATAGCCTGGCTTGCACAGACGGTGCTATCAGTGCAGCAGCCCAGGGCTGGCTGGTGCGAGCGCTCTCCCTCGGGGATGTGGCCCGCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 90 bp GGTGGGGCTGCACGTACTGCATGGCACCGATGGCCTGCTGGAAGTTaGGAGCCCTCTGCCACTCTCGGGATAGGGCCGGCTGAGTCTCCG +
Preference number: 5 (lower is better)
Translates to: GGAARTAWHRWPAGS*EPSATLGIGPAESP
Trigger: CGGAGACTCAGCCGGCCCTATCCCGAGAGTGGCAGAGGGCTCTCAACTTCCAGCAGGCCATCGGTGCCATGCAGTACGTGCAGCCCCACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp CACATCCCCGAGGGAGAGCGCTCGCACCAGCCAGCCCTGGGCTGCTaGACTGATAGCACCGTCTGTGCAAGCCAGGCTATCCAGGACGAC +
Preference number: 5 (lower is better)
Translates to: HIPEGERSHQPALGC*TDSTVCASQAIQDD
Trigger: GTCGTCCTGGATAGCCTGGCTTGCACAGACGGTGCTATCAGTGCAGCAGCCCAGGGCTGGCTGGTGCGAGCGCTCTCCCTCGGGGATGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp GGGTCCCAGGAGCTCTTCCTGCCAGGGTGCTCGGTGCTCTGTGTCTaGCCCTTGTTGCCCTTCCCTGGGGGCTCCTCGGGCTTGTTTTCC +
Preference number: 5 (lower is better)
Translates to: GSQELFLPGCSVLCV*PLLPFPGGSSGLFS
Trigger: GGAAAACAAGCCCGAGGAGCCCCCAGGGAAGGGCAACAAGGGCCAGACACAGAGCACCGAGCACCCTGGCAGGAAGAGCTCCTGGGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 90 bp GGATGGACGTCCTCTGGGTTTTGGGCTGGAGCAACAGCAGGAGCATaGGTTCGAGGATGCGGGCCACATCCCCGAGGGAGAGCGCTCGCA +
Preference number: 5 (lower is better)
Translates to: GWTSSGFWAGATAGA*VRGCGPHPRGRALA
Trigger: TGCGAGCGCTCTCCCTCGGGGATGTGGCCCGCATCCTCGAACCCATGCTCCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGTCCATCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp GCTCGCACCAGGCTTAACCTGGCATTGGACCTGGGGCTTTCTGGCTaGAAGGCTGCCAGCAAGGCCGCTCGCTTGGAGTATGCCCTGCCC +
Preference number: 5 (lower is better)
Translates to: ARTRLNLALDLGLSG*KAASKAARLEYALP
Trigger: GGGCAGGGCATACTCCAAGCGAGCGGCCTTGCTGGCAGCCTTCCAGCCAGAAAGCCCCAGGTCCAATGCCAGGTTAAGCCTGGTGCGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp CGGGGTCCAAGAACAGCTCCAGCACTTCCTTCTTCCACGCCCGCTTaGTGTAGGCATAGCCACTCAGGGAGCTCAGCAGCTGGGCGCCGG +
Preference number: 5 (lower is better)
Translates to: RGPRTAPALPSSTPA*CRHSHSGSSAAGRR
Trigger: CCGGCGCCCAGCTGCTGAGCTCCCTGAGTGGCTATGCCTACACCAAGCGGGCGTGGAAGAAGGAAGTGCTGGAGCTGTTCTTGGACCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTAGCAAGGCCGCTCGCTaGGAGTATGCCCTGCCCCCG +
Preference number: 5 (lower is better)
Translates to: ALLGANTPDAPESPAPHTSKAAR*EYALPP
Trigger: CGGGGGCAGGGCATACTCCAAGCGAGCGGCCTTGCT...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS GCA 90 bp TTCCAGATGTCGTCTCTTTCCGCAGACACCCGAGGCACCCTGAGGTaGTCAGAGAGCTCTGGCGACGAGGCGCTGAGCCCAATCCCACTG +
Preference number: 5 (lower is better)
Translates to: FQMSSLSADTRGTLR*SESSGDEALSPIPL
Trigger: CAGTGGGATTGGGCTCAGCGCCTCGTCGCCAGAGCTCTCTGAGCACCTCAGGGTGCCTCGGGTGTCTGCGGAAAGAGACGACATCTGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 90 bp GTGGTGAACTGTCCTCGAGGCAGGCGTTCCTCAGGGGCACCCTCCTaGGGCTCAGATTCACCACACGCCTCTTTGCACGTGGGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: VVNCPRGRRSSGAPS*GSDSPHASLHVGFF
Trigger: GAAGAAGCCCACGTGCAAAGAGGCGTGTGGTGAATCTGAGCCGCAGGAGGGTGCCCCTGAGGAACGCCTGCCTCGAGGACAGTTCACCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp CAGCTTGCCATAAAAGCTCTGGCCGATGAGGGCCTCCTGGTGGCGTaGCAGGAGGTTGGAGATGAGGTTGAGGTGCGCGGTGGAGCTGGT +
Preference number: 5 (lower is better)
Translates to: QLAIKALADEGLLVA*QEVGDEVEVRGGAG
Trigger: ACCAGCTCCACCGCGCACCTCAACCTCATCTCCAACCTCCTGGCACGCCACCAGGAGGCCCTCATCGGCCAGAGCTTTTATGGCAAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp GACGCGGACAGCGAGAGCAGGACGAACTCCTGGACCTTGCACCTCTaGAGCAGGCTGTGGATGAACTCCGTGTTCTTCCCTTCCGCCGAC +
Preference number: 5 (lower is better)
Translates to: DADSESRTNSWTLHL*SRLWMNSVFFPSAD
Trigger: GTCGGCGGAAGGGAAGAACACGGAGTTCATCCACAGCCTGCTGCAGAGGTGCAAGGTCCAGGAGTTCGTCCTGCTCTCGCTGTCCGCGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp GCTGAGAGCACAGACCAGGTCGACAAGGGTGTGCTGGGACGTGTTTaGCACGGGGACCATCTTGGTCTTGCTGTGGCGCCGTGCCTGCTT +
Preference number: 5 (lower is better)
Translates to: AESTDQVDKGVLGRV*HGDHLGLAVAPCLL
Trigger: AAGCAGGCACGGCGCCACAGCAAGACCAAGATGGTCCCCGTGGCAAACACGTCCCAGCACACCCTTGTCGACCTGGTCTGTGCTCTCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 90 bp GTCTGCAGGGTGCTGAGAGCACAGACCAGGTCGACAAGGGTGTGCTaGGACGTGTTTGCCACGGGGACCATCTTGGTCTTGCTGTGGCGC +
Preference number: 5 (lower is better)
Translates to: VCRVLRAQTRSTRVC*DVFATGTILVLLWR
Trigger: GCGCCACAGCAAGACCAAGATGGTCCCCGTGGCAAACACGTCCCAGCACACCCTTGTCGACCTGGTCTGTGCTCTCAGCACCCTGCAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TGTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTTCACCACACGCCTCTTaGCACGTGGGCTTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: CDRALWRCGSWHISRQLASPHAS*HVGFFL
Trigger: CAGGAAGAAGCCCACGTGCAAAGAGGCGTGTGGTGA...AGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS GCA 90 bp ACGATGAGGGCCTGCAGCAGCTTGAGCAGCTCGATCTGCAGTGGGTaGTCGCTCCAGATCTGGTCCTGCCCCAGATTGATGAGGCTCTCC +
Preference number: 5 (lower is better)
Translates to: TMRACSSLSSSICSG*SLQIWSCPRLMRLS
Trigger: GGAGAGCCTCATCAATCTGGGGCAGGACCAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAAGCTGCTGCAGGCCCTCATCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp TGCTCCAGGACGATGAGGGCCTGCAGCAGCTTGAGCAGCTCGATCTaGAGTGGGTGCTCGCTCCAGATCTGGTCCTGCCCCAGATTGATG +
Preference number: 5 (lower is better)
Translates to: CSRTMRACSSLSSSI*SGCSLQIWSCPRLM
Trigger: CATCAATCTGGGGCAGGACCAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAAGCTGCTGCAGGCCCTCATCGTCCTGGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp AACATGCTGAGAAGCAGAAAGTATCCAGGGGGAGCCAGGTTCAGCTaGGCAGCCTCCTTCAGGACGCCCAGGAGGGAAGGGAAGGCCTCC +
Preference number: 5 (lower is better)
Translates to: NMLRSRKYPGGARFS*AASFRTPRREGKAS
Trigger: GGAGGCCTTCCCTTCCCTCCTGGGCGTCCTGAAGGAGGCTGCGCAGCTGAACCTGGCTCCCCCTGGATACTTTCTGCTTCTCAGCATGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS CCA 90 bp TGGCGACGAGGCGCTGAGCCCAATCCCACTGTCTTCAGACTTCAGTaGAGGAAAGGAAGGTTCCTCATCACCCGCCACCACGGCCTCCGT +
Preference number: 5 (lower is better)
Translates to: WRRGAEPNPTVFRLQ*RKGRFLITRHHGLR
Trigger: ACGGAGGCCGTGGTGGCGGGTGATGAGGAACCTTCCTTTCCTCCACTGAAGTCTGAAGACAGTGGGATTGGGCTCAGCGCCTCGTCGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 90 bp TCTTTCCGCAGACACCCGAGGCACCCTGAGGTGCTCAGAGAGCTCTaGCGACGAGGCGCTGAGCCCAATCCCACTGTCTTCAGACTTCAG +
Preference number: 5 (lower is better)
Translates to: SFRRHPRHPEVLREL*RRGAEPNPTVFRLQ
Trigger: CTGAAGTCTGAAGACAGTGGGATTGGGCTCAGCGCCTCGTCGCCAGAGCTCTCTGAGCACCTCAGGGTGCCTCGGGTGTCTGCGGAAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 90 bp GCCTCCCTGCAGTCTTCCTTGGAGCCCACCAACTCAACGACCACCTaGTCAACACCCCATTCGGTTGCTGCCTTCCTGTGTGGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: ASLQSSLEPTNSTTT*STPHSVAAFLCGLL
Trigger: CAGCAGCCCACACAGGAAGGCAGCAACCGAATGGGGTGTTGACCAGGTGGTCGTTGAGTTGGTGGGCTCCAAGGAAGACTGCAGGGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 90 bp CAGGACGATGAGGGCCTGCAGCAGCTTGAGCAGCTCGATCTGCAGTaGGTGCTCGCTCCAGATCTGGTCCTGCCCCAGATTGATGAGGCT +
Preference number: 5 (lower is better)
Translates to: QDDEGLQQLEQLDLQ*VLAPDLVLPQIDEA
Trigger: AGCCTCATCAATCTGGGGCAGGACCAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAAGCTGCTGCAGGCCCTCATCGTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 90 bp TCACTGTCCAGCCCAGAGACTTTCCAAAGTATGGCAAGGAATGCGTaGCCAGGCTCACCCAGGCGGGGTGCATGCCGTAGCCATAGGCGG +
Preference number: 5 (lower is better)
Translates to: SLSSPETFQSMARNA*PGSPRRGACRSHRR
Trigger: CCGCCTATGGCTACGGCATGCACCCCGCCTGGGTGAGCCTGGTCACGCATTCCTTGCCATACTTTGGAAAGTCTCTGGGCTGGACAGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 90 bp CCACCTCCTTCACCAGCTGCAGCACTGAGTCTGTCTGCAGGGTGCTaGGAGCACAGACCAGGTCGACAAGGGTGTGCTGGGACGTGTTTG +
Preference number: 5 (lower is better)
Translates to: PPPSPAAALSLSAGC*EHRPGRQGCAGTCL
Trigger: CAAACACGTCCCAGCACACCCTTGTCGACCTGGTCTGTGCTCTCAGCACCCTGCAGACAGACTCAGTGCTGCAGCTGGTGAAGGAGGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS GCA 90 bp CAAATAAGGAGGCAGGGAGGCGGATGGAAGGGCTTGTCAGAACGCTaGCCCACAGGGCAGCATAGAACACCTCTCGCCCCACAACCACAG +
Preference number: 5 (lower is better)
Translates to: QIRRQGGGWKGLSER*PTGQHRTPLAPQPQ
Trigger: CTGTGGTTGTGGGGCGAGAGGTGTTCTATGCTGCCCTGTGGGGCAGCGTTCTGACAAGCCCTTCCATCCGCCTCCCTGCCTCCTTATTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 90 bp TTGAGCAGCTCGATCTGCAGTGGGTGCTCGCTCCAGATCTGGTCCTaGCCCAGATTGATGAGGCTCTCCTCAAAGAGGCTGTCCTCCGCG +
Preference number: 5 (lower is better)
Translates to: LSSSICSGCSLQIWS*PRLMRLSSKRLSSA
Trigger: CGCGGAGGACAGCCTCTTTGAGGAGAGCCTCATCAATCTGGGGCAGGACCAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp TCTGTCTGCAGGGTGCTGAGAGCACAGACCAGGTCGACAAGGGTGTaGTGGGACGTGTTTGCCACGGGGACCATCTTGGTCTTGCTGTGG +
Preference number: 5 (lower is better)
Translates to: SVCRVLRAQTRSTRV*WDVFATGTILVLLW
Trigger: CCACAGCAAGACCAAGATGGTCCCCGTGGCAAACACGTCCCAGCACACCCTTGTCGACCTGGTCTGTGCTCTCAGCACCCTGCAGACAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 90 bp TGGCTGGTGTACATGGACGCGGACAGCGAGAGCAGGACGAACTCCTaGACCTTGCACCTCTGCAGCAGGCTGTGGATGAACTCCGTGTTC +
Preference number: 5 (lower is better)
Translates to: WLVYMDADSESRTNS*TLHLCSRLWMNSVF
Trigger: GAACACGGAGTTCATCCACAGCCTGCTGCAGAGGTGCAAGGTCCAGGAGTTCGTCCTGCTCTCGCTGTCCGCGTCCATGTACACCAGCCA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GAAGAAGCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCAAGGACCTCCACGCTCTaGACCTGCACGTCGCGGTTG +
Preference number: 5 (lower is better)
Translates to: EEALLGANTPDAPESPAPRTSTL*TCTSRL
Trigger: CAACCGCGACGTGCAGGTCAAGAGCGTGGAGGTCCT...TGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGCTTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CAA 90 bp AAGTGCTGTGTCCAGGAACTTGCAGGCAGAGAGGTACATGGTGAGATCGCTGGGGCCACGGGGACCATCTaGGTCTTGCTGTGGCGCCGT +
Preference number: 5 (lower is better)
Translates to: KCCVQELAGREVHGEIAGATGTI*VLLWRR
Trigger: ACGGCGCCACAGCAAGACCAAGATGGTCCCCGTGGC...CCCAGCGATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CAA 90 bp TGTGACAGGGCACTCTGGCGCTGCGGTTCCTGGCACATCAGCAGGCAGCTGGCTCAGAGAGACCTGAGGTaGGGCTTTCACCTCCAGATT +
Preference number: 5 (lower is better)
Translates to: CDRALWRCGSWHISRQLAQRDLR*GFHLQI
Trigger: AATCTGGAGGTGAAAGCCCAACCTCAGGTCTCTCTG...AGCCAGCTGCCTGCTGATGTGCCAGGAACCGCAGCGCCAGAGTGCCCTGTCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS TCA 90 bp CTTCCAACCTTGTTCCCTTGTCAGGGTCCAGGAGGGCATGGCAGATaGTATCCTCACAGATGTTGGCAGTCGGGGCCAGGCAGTGCAGGC +
Preference number: 5 (lower is better)
Translates to: LPTLFPCQGPGGHGR*YPHRCWQSGPGSAG
Trigger: GCCTGCACTGCCTGGCCCCGACTGCCAACATCTGTGAGGATATCATCTGCCATGCCCTCCTGGACCCTGACAAGGGAACAAGGTTGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp TTCTCCTGCTTGAGACACTGGATGGACGTCCTCTGGGTTTTGGGCTaGAGCAACAGCAGGAGCATGGGTTCGAGGATGCGGGCCACATCC +
Preference number: 5 (lower is better)
Translates to: FSCLRHWMDVLWVLG*SNSRSMGSRMRATS
Trigger: GGATGTGGCCCGCATCCTCGAACCCATGCTCCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp AGCAGCTTGAGCAGCTCGATCTGCAGTGGGTGCTCGCTCCAGATCTaGTCCTGCCCCAGATTGATGAGGCTCTCCTCAAAGAGGCTGTCC +
Preference number: 5 (lower is better)
Translates to: SSLSSSICSGCSLQI*SCPRLMRLSSKRLS
Trigger: GGACAGCCTCTTTGAGGAGAGCCTCATCAATCTGGGGCAGGACCAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAAGCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GCAGAGAGGTACATGGTGAGATCGCTGGGGGACAACACCCTGCCTGCAGACCCAGCTGAGTTCTCCTGCTaGAGACACTGGATGGACGTC +
Preference number: 5 (lower is better)
Translates to: AERYMVRSLGDNTLPADPAEFSC*RHWMDV
Trigger: GACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAGC...TGGGTCTGCAGGCAGGGTGTTGTCCCCCAGCGATCTCACCATGTACCTCTCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CAA 90 bp GAAGAAGCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCAAGGGCCTGCAGCAGCTaGAGCAGCTCGATCTGCAGT +
Preference number: 5 (lower is better)
Translates to: EEALLGANTPDAPESPAPRACSS*SSSICS
Trigger: ACTGCAGATCGAGCTGCTCAAGCTGCTGCAGGCCCT...TGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGCTTCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS TCA 90 bp GGAGTGTCTGGGTGGCAGCTGAGAGGATGTGCACAACATCCCGTCTaGGAAGAGGGATGGCTCGCTCCTCAGGGTCCAGGCAGGTATAAA +
Preference number: 5 (lower is better)
Translates to: GVSGWQLRGCAQHPV*EEGWLAPQGPGRYK
Trigger: TTTATACCTGCCTGGACCCTGAGGAGCGAGCCATCCCTCTTCTCAGACGGGATGTTGTGCACATCCTCTCAGCTGCCACCCAGACACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 90 bp CAGTCGGGGCCAGGCAGTGCAGGCGGTAGAACAGCTCTACACAGGTaGTGTGATGTTCACGGGTCTCCTTGTTCAGCTGGTTCCAGAGCA +
Preference number: 5 (lower is better)
Translates to: QSGPGSAGGRTALHR*CDVHGSPCSAGSRA
Trigger: TGCTCTGGAACCAGCTGAACAAGGAGACCCGTGAACATCACATCACCTGTGTAGAGCTGTTCTACCGCCTGCACTGCCTGGCCCCGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 90 bp GGTGGAGGCTTCAGCAGCACCTGTGTGCACGTCGTCCTCGGCATCTaGCTCTTCCAGAGAGACCTGAGGTTGGGCTTTCACCTCCAGATT +
Preference number: 5 (lower is better)
Translates to: GGGFSSTCVHVVLGI*LFQRDLRLGFHLQI
Trigger: AATCTGGAGGTGAAAGCCCAACCTCAGGTCTCTCTGGAAGAGTCAGATGCCGAGGACGACGTGCACACAGGTGCTGCTGAAGCCTCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227156.2
CDS GCA 90 bp TGTCAGTGTGGCCAGAGCTCGTGTCTGCAGACTCTGTGTGCTCACTaGTATCCCCGCCACCAGAGGTCATCCTGTCTGGAAGGTCCACAT +
Preference number: 5 (lower is better)
Translates to: CQCGQSSCLQTLCAH*YPRHQRSSCLEGPH
Trigger: ATGTGGACCTTCCAGACAGGATGACCTCTGGTGGCGGGGATAGCAGTGAGCACACAGAGTCTGCAGACACGAGCTCTGGCCACACTGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp TTCTCACTGTCAGTGTGGCCAGAGCTCGTGTCTGCAGACTCTGTGTaGTCACTGCTATCCCCGCCACCAGAGGTCATCCTGTCTGGAAGG +
Preference number: 5 (lower is better)
Translates to: FSLSVWPELVSADSV*SLLSPPPEVILSGR
Trigger: CCTTCCAGACAGGATGACCTCTGGTGGCGGGGATAGCAGTGAGCACACAGAGTCTGCAGACACGAGCTCTGGCCACACTGACAGTGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp CTCCGTGTTCTTCCCTTCCGCCGACTTGGCCATGGAGACCAGCTGTaGTGTAATCCTAATGAGGACCTCCACGCTCTTGACCTGCACGTC +
Preference number: 5 (lower is better)
Translates to: LRVLPFRRLGHGDQL*CNPNEDLHALDLHV
Trigger: GACGTGCAGGTCAAGAGCGTGGAGGTCCTCATTAGGATTACAGCACAGCTGGTCTCCATGGCCAAGTCGGCGGAAGGGAAGAACACGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp GGAAGTACTTCTCATACAGGCCAAGCAGCACGGGCCGGACCGACATaGCGGCATAGGCCAGTAGGGGGAATAAGCCACAGCTGTACAAGA +
Preference number: 5 (lower is better)
Translates to: GSTSHTGQAARAGPT*RHRPVGGISHSCTR
Trigger: TCTTGTACAGCTGTGGCTTATTCCCCCTACTGGCCTATGCCGCCATGTCGGTCCGGCCCGTGCTGCTTGGCCTGTATGAGAAGTACTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS CCA 90 bp TCCTCGGCTGAGTTCTCCTGCTTGAGACACTGGATGGACGTCCTCTaGGTTTTGGGCTGGAGCAACAGCAGGAGCATGGGTTCGAGGATG +
Preference number: 5 (lower is better)
Translates to: SSAEFSCLRHWMDVL*VLGWSNSRSMGSRM
Trigger: CATCCTCGAACCCATGCTCCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAGCCGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp CATGAACAGTCTCCATACATGCTCCTGCTGCTACCATGGGCTGAGTaGCCCTCATCCCCTTTGATCTGCGCTGGCCTCTTCACCACCTCC +
Preference number: 5 (lower is better)
Translates to: HEQSPYMLLLLPWAE*PSSPLICAGLFTTS
Trigger: GGAGGTGGTGAAGAGGCCAGCGCAGATCAAAGGGGATGAGGGCCACTCAGCCCATGGTAGCAGCAGGAGCATGTATGGAGACTGTTCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228261.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTGTCTGGCCCTTGTaGCCCTTCCCTGGGGGCTCC +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGCVWPL*PFPGGS
Trigger: GGAGCCCCCAGGGAAGGGCAACAAGGGCCAGACACA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AAGTGCTGTGTCCAGGAACTTGCAGGCAGAGAGGTACATGGTGAGATCGCTGGGTTCCCTTCCGCCGACTaGGCCATGGAGACCAGCTGT +
Preference number: 5 (lower is better)
Translates to: KCCVQELAGREVHGEIAGFPSAD*AMETSC
Trigger: ACAGCTGGTCTCCATGGCCAAGTCGGCGGAAGGGAA...CCCAGCGATCTCACCATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGCACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGCCACGGGGACCATCTaGGTCTTGCTGTGGCGCCGT +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGATGTI*VLLWRR
Trigger: ACGGCGCCACAGCAAGACCAAGATGGTCCCCGTGGC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS TCA 90 bp CAGTACCCAGCATGCACTTCTGCTCCTTGCCTGGTGAGTCCCTGCTaGTGTGGTTCACCACAAATAAGGAGGCAGGGAGGCGGATGGAAG +
Preference number: 5 (lower is better)
Translates to: QYPACTSAPCLVSPC*CGSPQIRRQGGGWK
Trigger: CTTCCATCCGCCTCCCTGCCTCCTTATTTGTGGTGAACCACATCAGCAGGGACTCACCAGGCAAGGAGCAGAAGTGCATGCTGGGTACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 90 bp CATGGTGGAGGCTTCAGCAGCACTGTGCACGTCGTCCTCGGCATCTaGCTCTTCCAGAGAGACCTGAGGTTGGGCTTTCACCTCCAGATT +
Preference number: 5 (lower is better)
Translates to: HGGGFSSTVHVVLGI*LFQRDLRLGFHLQI
Trigger: AATCTGGAGGTGAAAGCCCAACCTCAGGTCTCTCTGGAAGAGTCAGATGCCGAGGACGACGTGCACAGTGCTGCTGAAGCCTCCACCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
CDS GCA 90 bp CTGCAATCGCTGGCTCCTGGAGTCTGGAAGAGCGTCTCACATAGCTaGTCAGTCTCCTCCTCAGACAGATACACAGGGAAGGTGGCACAG +
Preference number: 5 (lower is better)
Translates to: LQSLAPGVWKSVSHS*SVSSSDRYTGKVAQ
Trigger: CTGTGCCACCTTCCCTGTGTATCTGTCTGAGGAGGAGACTGAGCAGCTATGTGAGACGCTCTTCCAGACTCCAGGAGCCAGCGATTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 90 bp GCTGGGCGCCGGCTCGGAAGCTGGGAGCATTGTACGCACTGTGATTaGGCAGGTAAGGAAACACGTAGTATAGCAAGCGGGAGATTAGTG +
Preference number: 5 (lower is better)
Translates to: AGRRLGSWEHCTHCD*AGKETRSIASGRLV
Trigger: CACTAATCTCCCGCTTGCTATACTACGTGTTTCCTTACCTGCGCAATCACAGTGCGTACAATGCTCCCAGCTTCCGAGCCGGCGCCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 90 bp GGAGACCCTCGAACCGTGAACAAGTCCGAAAGCATCTGTTTAAACTaGGGCACGGTGATGGGCTTAGGGTCCCAGGAGCTCTTCCTGCCA +
Preference number: 5 (lower is better)
Translates to: GDPRTVNKSESICLN*GTVMGLGSQELFLP
Trigger: TGGCAGGAAGAGCTCCTGGGACCCTAAGCCCATCACCGTGCCCCAGTTTAAACAGATGCTTTCGGACTTGTTCACGGTTCGAGGGTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 90 bp TGCTTCTCCCTCTGCTGCTTCAACAGCCTCGATGTGGTGATGGCTTaGAGCTCCACGTCAGCCTCCTCGTCACTGGAAAACGACTCGGAA +
Preference number: 5 (lower is better)
Translates to: CFSLCCFNSLDVVMA*SSTSASSSLENDSE
Trigger: TTCCGAGTCGTTTTCCAGTGACGAGGAGGCTGACGTGGAGCTCCAAGCCATCACCACATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp GATAACAAAGGGTGTCACTGTCCAGCCCAGAGACTTTCCAAAGTATaGCAAGGAATGCGTGACCAGGCTCACCCAGGCGGGGTGCATGCC +
Preference number: 5 (lower is better)
Translates to: DNKGCHCPAQRLSKV*QGMRDQAHPGGVHA
Trigger: GGCATGCACCCCGCCTGGGTGAGCCTGGTCACGCATTCCTTGCCATACTTTGGAAAGTCTCTGGGCTGGACAGTGACACCCTTTGTTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTGTGTCTGGCCCTTGTaGCCCTTCCCTGGGGGCTCC +
Preference number: 5 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQCVWPL*PFPGGS
Trigger: GGAGCCCCCAGGGAAGGGCAACAAGGGCCAGACACA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp ACACCCTGCCTGCAGACCCATTGCCATCAGCAACTGGGGCTTTTATTCTGTTGCAGGTTGGAGATGAGGTaGAGGTGCGCGGTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: TPCLQTHCHQQLGLLFCCRLEMR*RCAVEL
Trigger: CAGCTCCACCGCGCACCTCAACCTCATCTCCAACCT...GCAACAGAATAAAAGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAGGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGACCTGCACGTCGCGGTaGCCAAGGATGTCCCTGTGG +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLTCTSR*PRMSLW
Trigger: CCACAGGGACATCCTTGGCAACCGCGACGTGCAGGT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS TCA 90 bp TCTGTTGAGAGACATGTCCCTTCTCAGGAGTGTCTGGGTGGCAGCTaGGAGGATGTGCACAACATCCCGTCTGAGAAGAGGGATGGCTCG +
Preference number: 5 (lower is better)
Translates to: SVERHVPSQECLGGS*EDVHNIPSEKRDGS
Trigger: CGAGCCATCCCTCTTCTCAGACGGGATGTTGTGCACATCCTCTCAGCTGCCACCCAGACACTCCTGAGAAGGGACATGTCTCTCAACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 90 bp GCACTGTGCACGTCGTCCTCGGCATCTGACTCTTCCAGAGAGACCTaGGGTTGGGCTTTCACCTCCAGATTTCTGCTGAGCCAGCTTGTT +
Preference number: 5 (lower is better)
Translates to: ALCTSSSASDSSRET*GWAFTSRFLLSQLV
Trigger: AACAAGCTGGCTCAGCAGAAATCTGGAGGTGAAAGCCCAACCTCAGGTCTCTCTGGAAGAGTCAGATGCCGAGGACGACGTGCACAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000228261.2
CDS TCA 90 bp CCTGTGTGCACGTCGTCCTCGGCATCTGACTCTTCCAGAGAGACCTaGGGTTGGGCTTTCACCTCCAGATTTCTGCTGAGCCAGCTTGTT +
Preference number: 5 (lower is better)
Translates to: PVCTSSSASDSSRET*GWAFTSRFLLSQLV
Trigger: AACAAGCTGGCTCAGCAGAAATCTGGAGGTGAAAGCCCAACCTCAGGTCTCTCTGGAAGAGTCAGATGCCGAGGACGACGTGCACACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227156.2
CDS GCA 90 bp GAAAGTGGATGTGTTCTCACTGTCAGTGTGGCCAGAGCTCGTGTCTaGAGACTCTGTGTGCTCACTGCTATCCCCGCCACCAGAGGTCAT +
Preference number: 5 (lower is better)
Translates to: ESGCVLTVSVARARV*RLCVLTAIPATRGH
Trigger: ATGACCTCTGGTGGCGGGGATAGCAGTGAGCACACAGAGTCTGCAGACACGAGCTCTGGCCACACTGACAGTGAGAACACATCCACTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp GAGCGAGGGACTGGGAGTGGTTTATCACTTCCAGCAGTGTGGCGATaGCTATGTTCTGGAGGGAGCAGTCGCTCACACAGCAGCAAATTG +
Preference number: 5 (lower is better)
Translates to: ERGTGSGLSLPAVWR*LCSGGSSRSHSSKL
Trigger: CAATTTGCTGCTGTGTGAGCGACTGCTCCCTCCAGAACATAGCCATCGCCACACTGCTGGAAGTGATAAACCACTCCCAGTCCCTCGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 90 bp AACCAACGGTGTAAATCCTCGGCTGAGTTCTCCTGCTTGAGACACTaGATGGACGTCCTCTGGGTTTTGGGCTGGAGCAACAGCAGGAGC +
Preference number: 5 (lower is better)
Translates to: NQRCKSSAEFSCLRH*MDVLWVLGWSNSRS
Trigger: GCTCCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAGCCGAGGATTTACACCGTTGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGACGTCCTCTGGGTTTaGGGCTGGAGCAACAGCAGG +
Preference number: 5 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFDVLWV*GWSNSR
Trigger: CCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGTC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGACGTCCTCTGGGTTTaGGGCTGGAGCAACAGCAGG +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLDVLWV*GWSNSR
Trigger: CCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGTC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAAGCAAGGCCGCTCGCTaGGAGTATGCCCTGCCCCCG +
Preference number: 5 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKSKAAR*EYALPP
Trigger: CGGGGGCAGGGCATACTCCAAGCGAGCGGCCTTGCT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTAGGTTGGAGATGAGGTaGAGGTGCGCGGTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGRLEMR*RCAVEL
Trigger: CAGCTCCACCGCGCACCTCAACCTCATCTCCAACCT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTGGCGTGCCAGGAGGTaGGAGATGAGGTTGAGGTGC +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLWRARR*EMRLRC
Trigger: GCACCTCAACCTCATCTCCAACCTCCTGGCACGCCA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGACCTGCACGTCGCGGTaGCCAAGGATGTCCCTGTGG +
Preference number: 5 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQTCTSR*PRMSLW
Trigger: CCACAGGGACATCCTTGGCAACCGCGACGTGCAGGT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGACCTGCACGTCGCGGTaGCCAAGGATGTCCCTGTGG +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQTCTSR*PRMSLW
Trigger: CCACAGGGACATCCTTGGCAACCGCGACGTGCAGGT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAGGACCTCCACGCTCTaGACCTGCACGTCGCGGTTG +
Preference number: 5 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQRTSTL*TCTSRL
Trigger: CAACCGCGACGTGCAGGTCAAGAGCGTGGAGGTCCT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGAGGACCTCCACGCTCTaGACCTGCACGTCGCGGTTG +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQRTSTL*TCTSRL
Trigger: CAACCGCGACGTGCAGGTCAAGAGCGTGGAGGTCCT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAGGGCCTGCAGCAGCTaGAGCAGCTCGATCTGCAGT +
Preference number: 5 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFRACSS*SSSICS
Trigger: ACTGCAGATCGAGCTGCTCAAGCTGCTGCAGGCCCT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCCTGCCTGCAGACCCATaGCCATCAGCAACTGGGGCT +
Preference number: 5 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFLPADP*PSATGA
Trigger: AGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAG...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 90 bp GGGCTCCTCGGGCTTGTTTTCCTCCCCAGACACAGTCAGCGACGCTaGAAAGATGTTCTTGCTGGCAAAGTTTGCAATGAGCTCCTGGAT +
Preference number: 5 (lower is better)
Translates to: GLLGLVFLPRHSQRR*KDVLAGKVCNELLD
Trigger: ATCCAGGAGCTCATTGCAAACTTTGCCAGCAAGAACATCTTTGCAGCGTCGCTGACTGTGTCTGGGGAGGAAAACAAGCCCGAGGAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 90 bp ATGTGTTTGAACAAGGCCTCGACTGTCTCCTGCTTCTCCCTCTGCTaGTTCAACAGCCTCGATGTGGTGATGGCTTGGAGCTCCACGTCA +
Preference number: 5 (lower is better)
Translates to: MCLNKASTVSCFSLC*FNSLDVVMAWSSTS
Trigger: TGACGTGGAGCTCCAAGCCATCACCACATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCAGGAGACAGTCGAGGCCTTGTTCAAACACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 90 bp AAGATGTGTTTGAACAAGGCCTCGACTGTCTCCTGCTTCTCCCTCTaGTGCTTCAACAGCCTCGATGTGGTGATGGCTTGGAGCTCCACG +
Preference number: 5 (lower is better)
Translates to: KMCLNKASTVSCFSL*CFNSLDVVMAWSST
Trigger: CGTGGAGCTCCAAGCCATCACCACATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCAGGAGACAGTCGAGGCCTTGTTCAAACACATCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp TCGTGGGAGGGAGATGAGAAAGTGGATGTGTTCTCACTGTCAGTGTaGCCAGAGCTCGTGTCTGCAGACTCTGTGTGCTCACTGCTATCC +
Preference number: 5 (lower is better)
Translates to: SWEGDEKVDVFSLSV*PELVSADSVCSLLS
Trigger: GGATAGCAGTGAGCACACAGAGTCTGCAGACACGAGCTCTGGCCACACTGACAGTGAGAACACATCCACTTTCTCATCTCCCTCCCACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTCTCTGGAGAGCCTTGTaGAGCTTGCCGAGCGAAGAG +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGLWRAL*SLPSEE
Trigger: CTCTTCGCTCGGCAAGCTCAACAAGGCTCTCCAGAG...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTATGCACTTCTGCTCCTaGCCTGGTGAGTCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGMHFCS*PGESLL
Trigger: CAGCAGGGACTCACCAGGCAAGGAGCAGAAGTGCAT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTATATCCTCACAGATGTaGGCAGTCGGGGCCAGGCAG +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGISSQM*AVGARQ
Trigger: CTGCCTGGCCCCGACTGCCAACATCTGTGAGGATAT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCTCCAACCTTGTTCCCTaGTCAGGGTCCAGGAGGGCA +
Preference number: 5 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSNLVP*SGSRRA
Trigger: TGCCCTCCTGGACCCTGACAAGGGAACAAGGTTGGA...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTCACCACACGCCTCTTaGCACGTGGGCTTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSPHAS*HVGFFL
Trigger: CAGGAAGAAGCCCACGTGCAAAGAGGCGTGTGGTGA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTAGGCTTAACCTGGCATaGGACCTGGGGCTTTCTGGC +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGRLNLA*DLGLSG
Trigger: GCCAGAAAGCCCCAGGTCCAATGCCAGGTTAAGCCT...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGAGGCTTAACCTGGCATaGGACCTGGGGCTTTCTGGC +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLRLNLA*DLGLSG
Trigger: GCCAGAAAGCCCCAGGTCCAATGCCAGGTTAAGCCT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGTCGGAAGCCTGTGTCTaGTCTGAGTCTGCTCGCACC +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLSEACV*SESART
Trigger: GGTGCGAGCAGACTCAGACAAGACACAGGCTTCCGA...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAGGTTGGAGATGAGGTaGAGGTGCGCGGTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQRLEMR*RCAVEL
Trigger: CAGCTCCACCGCGCACCTCAACCTCATCTCCAACCT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCTGGCGTGCCAGGAGGTaGGAGATGAGGTTGAGGTGC +
Preference number: 5 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPWRARR*EMRLRC
Trigger: GCACCTCAACCTCATCTCCAACCTCCTGGCACGCCA...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTTCCCTTCCGCCGACTaGGCCATGGAGACCAGCTGT +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQFPSAD*AMETSC
Trigger: ACAGCTGGTCTCCATGGCCAAGTCGGCGGAAGGGAA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTTCCCTTCCGCCGACTaGGCCATGGAGACCAGCTGT +
Preference number: 5 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQFPSAD*AMETSC
Trigger: ACAGCTGGTCTCCATGGCCAAGTCGGCGGAAGGGAA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCCTGCCTGCAGACCCATaGCCATCAGCAACTGGGGCT +
Preference number: 5 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPLPADP*PSATGA
Trigger: AGCCCCAGTTGCTGATGGCAATGGGTCTGCAGGCAG...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
54% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 90 bp CAAGAACATTGGCGTCTAGCAGTGAAGCACACAGGGATCTCACCGTaGGCTGGTAATCAGTACCCAGCATGCACTTCTGCTCCTTGCCTG +
Preference number: 5 (lower is better)
Translates to: QEHWRLAVKHTGISP*AGNQYPACTSAPCL
Trigger: CAGGCAAGGAGCAGAAGTGCATGCTGGGTACTGATTACCAGCTCACGGTGAGATCCCTGTGTGCTTCACTGCTAGACGCCAATGTTCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 90 bp CTATGTTCTGGAGGGAGCAGTCGCTCACACAGCAGCAAATTGTCATaGGGGATTTCAGCCACGGAGGAAAACTGCAATCGCTGGCTCCTG +
Preference number: 5 (lower is better)
Translates to: LCSGGSSRSHSSKLS*GISATEENCNRWLL
Trigger: CAGGAGCCAGCGATTGCAGTTTTCCTCCGTGGCTGAAATCCCTCATGACAATTTGCTGCTGTGTGAGCGACTGCTCCCTCCAGAACATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 90 bp CTTCCAGAGAGACCTGAGGTTGGGCTTTCACCTCCAGATTTCTGCTaGGCCAGCTTGTTTGTTCCAAGGAGGAGCCAGCGATGGTACCTA +
Preference number: 5 (lower is better)
Translates to: LPERPEVGLSPPDFC*ASLFVPRRSQRWYL
Trigger: TAGGTACCATCGCTGGCTCCTCCTTGGAACAAACAAGCTGGCTCAGCAGAAATCTGGAGGTGAAAGCCCAACCTCAGGTCTCTCTGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS GCA 90 bp GCTCTGGAGAGCCTTGTTGAGCTTGCCGAGCGAAGAGATGAGATCTaGCCATTCGCTGGAGGACTCAAAGTTTCTCAACGCCTTCTCGAT +
Preference number: 5 (lower is better)
Translates to: ALESLVELAERRDEI*PFAGGLKVSQRLLD
Trigger: ATCGAGAAGGCGTTGAGAAACTTTGAGTCCTCCAGCGAATGGGCAGATCTCATCTCTTCGCTCGGCAAGCTCAACAAGGCTCTCCAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000228846.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTTGCTCTGGAGAGCCTaGTTGAGCTTGCCGAGCGAA +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGLLWRA*LSLPSE
Trigger: TTCGCTCGGCAAGCTCAACAAGGCTCTCCAGAGCAA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS-3UTR CAA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGATGCACTTCTGCTCCTaGCCTGGTGAGTCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQMHFCS*PGESLL
Trigger: CAGCAGGGACTCACCAGGCAAGGAGCAGAAGTGCAT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGTCCCTGCAGTCTTCCTaGGAGCCCACCAACTCAACG +
Preference number: 5 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSLQSS*EPTNST
Trigger: CGTTGAGTTGGTGGGCTCCAAGGAAGACTGCAGGGA...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCATATCCTCACAGATGTaGGCAGTCGGGGCCAGGCAG +
Preference number: 5 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPISSQM*AVGARQ
Trigger: CTGCCTGGCCCCGACTGCCAACATCTGTGAGGATAT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTCCAACCTTGTTCCCTaGTCAGGGTCCAGGAGGGCA +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQSNLVP*SGSRRA
Trigger: TGCCCTCCTGGACCCTGACAAGGGAACAAGGTTGGA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGCTGAGTTCTCCTGCTaGAGACACTGGATGGACGTC +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLAEFSC*RHWMDV
Trigger: GACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAGC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAAGCAAGGCCGCTCGCTaGGAGTATGCCCTGCCCCCG +
Preference number: 5 (lower is better)
Translates to: LEYITRPLRETCLAAEQKSKAAR*EYALPP
Trigger: CGGGGGCAGGGCATACTCCAAGCGAGCGGCCTTGCT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGAGGCTTAACCTGGCATaGGACCTGGGGCTTTCTGGC +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQRLNLA*DLGLSG
Trigger: GCCAGAAAGCCCCAGGTCCAATGCCAGGTTAAGCCT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTCGGAAGCCTGTGTCTaGTCTGAGTCTGCTCGCACC +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQSEACV*SESART
Trigger: GGTGCGAGCAGACTCAGACAAGACACAGGCTTCCGA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS TCA 90 bp CAGTCAGCGACGCTGCAAAGATGTTCTTGCTGGCAAAGTTTGCAATaGGCTCCTGGATGCAGAGAAATGTCGCCTGCATGGTCCCGTCTT +
Preference number: 5 (lower is better)
Translates to: QSATLQRCSCWQSLQ*APGCREMSPAWSRL
Trigger: AAGACGGGACCATGCAGGCGACATTTCTCTGCATCCAGGAGCTCATTGCAAACTTTGCCAGCAAGAACATCTTTGCAGCGTCGCTGACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 90 bp CTGGCAAAGTTTGCAATGAGCTCCTGGATGCAGAGAAATGTCGCCTaGATGGTCCCGTCTTTCTTCCAGATGTCGTCTCTTTCCGCAGAC +
Preference number: 5 (lower is better)
Translates to: LAKFAMSSWMQRNVA*MVPSFFQMSSLSAD
Trigger: GTCTGCGGAAAGAGACGACATCTGGAAGAAAGACGGGACCATGCAGGCGACATTTCTCTGCATCCAGGAGCTCATTGCAAACTTTGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 90 bp CCACTGAAGACGGCAAAAGCCTGGCGCTTCAGCAGCATGGCCTTCTaGTCAAAGCTGGAGAAGAGTTTTAAGGAACTGCTCTGCATGTTC +
Preference number: 5 (lower is better)
Translates to: PLKTAKAWRFSSMAF*SKLEKSFKELLCMF
Trigger: GAACATGCAGAGCAGTTCCTTAAAACTCTTCTCCAGCTTTGAGCAGAAGGCCATGCTGCTGAAGCGCCAGGCTTTTGCCGTCTTCAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS GCA 90 bp ACACAGGAATGTCCACCAGGGGAGACTTCTGGTCTCTTCCTGGTCTaGTGTGACATGAACAGTCTCCATACATGCTCCTGCTGCTACCAT +
Preference number: 5 (lower is better)
Translates to: TQECPPGETSGLFLV*CDMNSLHTCSCCYH
Trigger: ATGGTAGCAGCAGGAGCATGTATGGAGACTGTTCATGTCACAGCAGACCAGGAAGAGACCAGAAGTCTCCCCTGGTGGACATTCCTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228261.2
CDS CCA 90 bp TGGGAGTGGTTTATCACTTCCAGCAGTGTGGCGATGGCTATGTTCTaGAGGGAGCAGTCGCTCACACAGCAGCAAATTGTCATGAGGGAT +
Preference number: 5 (lower is better)
Translates to: WEWFITSSSVAMAMF*REQSLTQQQIVMRD
Trigger: ATCCCTCATGACAATTTGCTGCTGTGTGAGCGACTGCTCCCTCCAGAACATAGCCATCGCCACACTGCTGGAAGTGATAAACCACTCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGACAGAGCTTCCAACCTaGTTCCCTTGTCAGGGTCCA +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLTELPT*FPCQGP
Trigger: TGGACCCTGACAAGGGAACAAGGTTGGAAGCTCTGT...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCTGTCAAAGGAGCGATaGTGGGACGTCACACGACTA +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLLSKER*WDVTRL
Trigger: TAGTCGTGTGACGTCCCACAATCGCTCCTTTGACAG...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAGACGTCCTCTGGGTTTaGGGCTGGAGCAACAGCAGG +
Preference number: 5 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKDVLWV*GWSNSR
Trigger: CCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGTC...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGCTGAGTTCTCCTGCTaGAGACACTGGATGGACGTC +
Preference number: 5 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPAEFSC*RHWMDV
Trigger: GACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAGC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTTGGTATGGACAGTCTTaGGATGAAAGCATAGCAGAA +
Preference number: 5 (lower is better)
Translates to: ALLGANTPDAPESPAPHTWYGQS*DESIAE
Trigger: TTCTGCTATGCTTTCATCCAAAGACTGTCCATACCA...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTGTCCGACTCTGAGGTaGTCTGTCAGGCGCTCTTGT +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQCPTLR*SVRRSC
Trigger: ACAAGAGCGCCTGACAGACAACCTCAGAGTCGGACA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGCTGTGTCCAGGAACTaGCAGGCAGAGAGGTACATG +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQAVSRN*QAERYM
Trigger: CATGTACCTCTCTGCCTGCAAGTTCCTGGACACAGC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 90 bp TGCTTTCCAGGTTGGGTGTTCTTGTCACAAAGTCATTCAACATGCTaGGAAGCAGAAAGTATCCAGGGGGAGCCAGGTTCAGCTGCGCAG +
Preference number: 5 (lower is better)
Translates to: CFPGWVFLSQSHSTC*EAESIQGEPGSAAQ
Trigger: CTGCGCAGCTGAACCTGGCTCCCCCTGGATACTTTCTGCTTCTCAGCATGTTGAATGACTTTGTGACAAGAACACCCAACCTGGAAAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS TCA 90 bp AGGAGGAGCCAGCGATGGTACCTACAGCTTCCAGGATTCTCTGAGTaGTTTCCTGCAGGTCTTTTTGGTCCTTCTTGCTTTCCAGGTTGG +
Preference number: 5 (lower is better)
Translates to: RRSQRWYLQLPGFSE*FPAGLFGPSCFPGW
Trigger: CCAACCTGGAAAGCAAGAAGGACCAAAAAGACCTGCAGGAAATCACTCAGAGAATCCTGGAAGCTGTAGGTACCATCGCTGGCTCCTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS TCA 90 bp AGATGGTCAATGACGGACTTCCAGTGGACGCAAGACGTATCCATCTaGAAGAAAGCGGGGTCCAAGAACAGCTCCAGCACTTCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RWSMTDFQWTQDVSI*KKAGSKNSSSTSFF
Trigger: GAAGAAGGAAGTGCTGGAGCTGTTCTTGGACCCCGCTTTCTTTCAGATGGATACGTCTTGCGTCCACTGGAAGTCCGTCATTGACCATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS GCA 90 bp ATAGCAAGCGGGAGATTAGTGGTACAGCTTTCTCTTTCTCGTCGCTaGGGTAAACCATGTCCAGGAGAGAAGCCAGAACCTCTGCCAAGA +
Preference number: 5 (lower is better)
Translates to: IASGRLVVQLSLSRR*GKPCPGEKPEPLPR
Trigger: TCTTGGCAGAGGTTCTGGCTTCTCTCCTGGACATGGTTTACCGCAGCGACGAGAAAGAGAAAGCTGTACCACTAATCTCCCGCTTGCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 90 bp GACGCTGCAAAGATGTTCTTGCTGGCAAAGTTTGCAATGAGCTCCTaGATGCAGAGAAATGTCGCCTGCATGGTCCCGTCTTTCTTCCAG +
Preference number: 5 (lower is better)
Translates to: DAAKMFLLAKFAMSS*MQRNVACMVPSFFQ
Trigger: CTGGAAGAAAGACGGGACCATGCAGGCGACATTTCTCTGCATCCAGGAGCTCATTGCAAACTTTGCCAGCAAGAACATCTTTGCAGCGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTCCTTGGCCAGCCATTaGGTTCCCACAATCTTGAAG +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGSLASH*VPTILK
Trigger: CTTCAAGATTGTGGGAACCAAATGGCTGGCCAAGGA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS-3UTR CAA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGGCGGCATCTGGACTTaGCTAAGCACCTTGAAACAT +
Preference number: 5 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFGGIWT*LSTLKH
Trigger: ATGTTTCAAGGTGCTTAGCAAAGTCCAGATGCCGCC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCTGCAGTCTTCCTaGGAGCCCACCAACTCAACG +
Preference number: 5 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKSLQSS*EPTNST
Trigger: CGTTGAGTTGGTGGGCTCCAAGGAAGACTGCAGGGA...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAATATCCTCACAGATGTaGGCAGTCGGGGCCAGGCAG +
Preference number: 5 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKISSQM*AVGARQ
Trigger: CTGCCTGGCCCCGACTGCCAACATCTGTGAGGATAT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGACAGAGCTTCCAACCTaGTTCCCTTGTCAGGGTCCA +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQTELPT*FPCQGP
Trigger: TGGACCCTGACAAGGGAACAAGGTTGGAAGCTCTGT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCACCACACGCCTCTTaGCACGTGGGCTTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKSPHAS*HVGFFL
Trigger: CAGGAAGAAGCCCACGTGCAAAGAGGCGTGTGGTGA...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GCCCTCCTAGGCGCTAACACTCCGGATGCTCCAGAAAGTCCTGCTCCACACACTAGATTCACTTTCATATaGCTTGACCAGATCGTCCAA +
Preference number: 5 (lower is better)
Translates to: ALLGANTPDAPESPAPHTRFTFI*LDQIVQ
Trigger: TTGGACGATCTGGTCAAGCAATATGAAAGTGAATCT...AGTGTGTGGAGCAGGACTTTCTGGAGCATCCGGAGTGTTAGCGCCTAGGAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CAA 90 bp GCAGAGAGGTACATGGTGAGATCGCTGGGGGACAACACCCTGCCTGCAGACCCAGTACTGATGGTGAACTaGACAGATTCACTTTCATAT +
Preference number: 5 (lower is better)
Translates to: AERYMVRSLGDNTLPADPVLMVN*TDSLSY
Trigger: ATATGAAAGTGAATCTGTCAAGTTCACCATCAGTAC...TGGGTCTGCAGGCAGGGTGTTGTCCCCCAGCGATCTCACCATGTACCTCTCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CAA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAGCAGGCAGCTGGCTTaGGGTTTTGAAAGCACAGTT +
Preference number: 5 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSRQLA*GFESTV
Trigger: AACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGCT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 90 bp AATTCTCAACCACTTGAGGTCCTATTTCCGGCTTGTCCAGCAGACTaGCAAGGATTCGGAAAGGCTTCAGATATGCATGGTGGCGCTCCT +
Preference number: 5 (lower is better)
Translates to: NSQPLEVLFPACPAD*QGFGKASDMHGGAP
Trigger: AGGAGCGCCACCATGCATATCTGAAGCCTTTCCGAATCCTTGTCAGTCTGCTGGACAAGCCGGAAATAGGACCTCAAGTGGTTGAGAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 90 bp CGATTGTGGGACGTCACACGACTACCTTGGATTTCTCGTGTCAGGTaGCAGATCACAGAAAACCTAAACAGAGCTTCCAACCTTGTTCCC +
Preference number: 5 (lower is better)
Translates to: RLWDVTRLPWISRVR*QITENLNRASNLVP
Trigger: GGGAACAAGGTTGGAAGCTCTGTTTAGGTTTTCTGTGATCTGGCACCTGACACGAGAAATCCAAGGTAGTCGTGTGACGTCCCACAATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 90 bp TCCAGCAGACTGACAAGGATTCGGAAAGGCTTCAGATATGCATGGTaGCGCTCCTCTAAGTCAGCGTCTAAGAACTTCTGGTGCAGTATC +
Preference number: 5 (lower is better)
Translates to: SSRLTRIRKGFRYAW*RSSKSASKNFWCSI
Trigger: GATACTGCACCAGAAGTTCTTAGACGCTGACTTAGAGGAGCGCCACCATGCATATCTGAAGCCTTTCCGAATCCTTGTCAGTCTGCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 90 bp TTGTCCAGCAGACTGACAAGGATTCGGAAAGGCTTCAGATATGCATaGTGGCGCTCCTCTAAGTCAGCGTCTAAGAACTTCTGGTGCAGT +
Preference number: 5 (lower is better)
Translates to: LSSRLTRIRKGFRYA*WRSSKSASKNFWCS
Trigger: ACTGCACCAGAAGTTCTTAGACGCTGACTTAGAGGAGCGCCACCATGCATATCTGAAGCCTTTCCGAATCCTTGTCAGTCTGCTGGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGAGGGAATACTTCAGGTaGCTCTGGAGAGCCTTGTTG +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQREYFR*LWRALL
Trigger: CAACAAGGCTCTCCAGAGCAACCTGAAGTATTCCCT...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS-3UTR CAA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATGGCGTGCCAGGAGGTaGGAGATGAGGTTGAGGTGC +
Preference number: 5 (lower is better)
Translates to: LEYITRPLRETCLAAEQKWRARR*EMRLRC
Trigger: GCACCTCAACCTCATCTCCAACCTCCTGGCACGCCA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAAGGGCCTGCAGCAGCTaGAGCAGCTCGATCTGCAGT +
Preference number: 5 (lower is better)
Translates to: LEYITRPLRETCLAAEQKRACSS*SSSICS
Trigger: ACTGCAGATCGAGCTGCTCAAGCTGCTGCAGGCCCT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGTGAGGCCTGCATTCTaGGTGATTCTCTTCCAGTTC +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQVRPAF*VILFQF
Trigger: GAACTGGAAGAGAATCACCAAGAATGCAGGCCTCAC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCGTGAGGCCTGCATTCTaGGTGATTCTCTTCCAGTTC +
Preference number: 5 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPVRPAF*VILFQF
Trigger: GAACTGGAAGAGAATCACCAAGAATGCAGGCCTCAC...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGAGCAGGCAGCTGGCTTaGGGTTTTGAAAGCACAGTT +
Preference number: 5 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQSRQLA*GFESTV
Trigger: AACTGTGCTTTCAAAACCCAAAGCCAGCTGCCTGCT...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 90 bp AGATATGCATGGTGGCGCTCCTCTAAGTCAGCGTCTAAGAACTTCTaGTGCAGTATCTCAGCCAGAGCCTCAACTAAAAGATCCTTGGAG +
Preference number: 5 (lower is better)
Translates to: RYAWWRSSKSASKNF*CSISARASTKRSLE
Trigger: CTCCAAGGATCTTTTAGTTGAGGCTCTGGCTGAGATACTGCACCAGAAGTTCTTAGACGCTGACTTAGAGGAGCGCCACCATGCATATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 90 bp CGGCAAAAGCCTGGCGCTTCAGCAGCATGGCCTTCTGCTCAAAGCTaGAGAAGAGTTTTAAGGAACTGCTCTGCATGTTCATTAAATCCT +
Preference number: 5 (lower is better)
Translates to: RQKPGASAAWPSAQS*RRVLRNCSACSLNP
Trigger: AGGATTTAATGAACATGCAGAGCAGTTCCTTAAAACTCTTCTCCAGCTTTGAGCAGAAGGCCATGCTGCTGAAGCGCCAGGCTTTTGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGCTGCAAAGATGTTCTaGCTGGCAAAGTTTGCAATG +
Preference number: 5 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFAAKMF*LAKFAM
Trigger: CATTGCAAACTTTGCCAGCAAGAACATCTTTGCAGC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAACAGAGAGACCTGAGGTaGGGCTTTCACCTCCAGATT +
Preference number: 5 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKQRDLR*GFHLQI
Trigger: AATCTGGAGGTGAAAGCCCAACCTCAGGTCTCTCTG...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAGCTGGCTTTGGGTTTaGAAAGCACAGTTTAACGTG +
Preference number: 5 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFSWLWV*KAQFNV
Trigger: CACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCACTTTGCTAAGCACCTaGAAACATGTCTTCAAGGCG +
Preference number: 5 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPTLLST*KHVFKA
Trigger: CGCCTTGAAGACATGTTTCAAGGTGCTTAGCAAAGT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTTCTGGAACAAATGCCCATCTGTAAATCTGAAACAAGGGCATCTTGTCTGGAGACAGAGCTTCCAACCTaGTTCCCTTGTCAGGGTCCA +
Preference number: 5 (lower is better)
Translates to: LLEQMPICKSETRASCLETELPT*FPCQGP
Trigger: TGGACCCTGACAAGGGAACAAGGTTGGAAGCTCTGT...CTCCAGACAAGATGCCCTTGTTTCAGATTTACAGATGGGCATTTGTTCCAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226215.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTATGGACAGTCTTaGGATGAAAGCATAGCAGAA +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGWYGQS*DESIAE
Trigger: TTCTGCTATGCTTTCATCCAAAGACTGTCCATACCA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATGTCCGACTCTGAGGTaGTCTGTCAGGCGCTCTTGT +
Preference number: 5 (lower is better)
Translates to: LEYITRPLRETCLAAEQKCPTLR*SVRRSC
Trigger: ACAAGAGCGCCTGACAGACAACCTCAGAGTCGGACA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCGCGTGTCTGTTTTCTTaGATTGTGCTTATTAGTGGA +
Preference number: 5 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFACLFS*IVLISG
Trigger: TCCACTAATAAGCACAATCAAAGAAAACAGACACGC...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACTGTCAAAGGAGCGATaGTGGGACGTCACACGACTA +
Preference number: 5 (lower is better)
Translates to: LEYITRPLRETCLAAEQKLSKER*WDVTRL
Trigger: TAGTCGTGTGACGTCCCACAATCGCTCCTTTGACAG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAGATTCACTTTCATATaGCTTGACCAGATCGTCCAA +
Preference number: 5 (lower is better)
Translates to: PLNRKYLNSTSGLWQGWFRFTFI*LDQIVQ
Trigger: TTGGACGATCTGGTCAAGCAATATGAAAGTGAATCT...GAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGTGGTATGGACAGTCTTaGGATGAAAGCATAGCAGAA +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQWYGQS*DESIAE
Trigger: TTCTGCTATGCTTTCATCCAAAGACTGTCCATACCA...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAACAGAGAGACCTGAGGTaGGGCTTTCACCTCCAGATT +
Preference number: 5 (lower is better)
Translates to: LEYITRPLRETCLAAEQKQRDLR*GFHLQI
Trigger: AATCTGGAGGTGAAAGCCCAACCTCAGGTCTCTCTG...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGCAGATCTTCCTCAAGTaGTATGAATGTCTGGATCAA +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLQIFLK*YECLDQ
Trigger: TTGATCCAGACATTCATACAACTTGAGGAAGATCTG...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAATACAAGAACAAGTCCTaGGCCAGCCATTTGGTTCCC +
Preference number: 5 (lower is better)
Translates to: LEYITRPLRETCLAAEQKYKNKS*ASHLVP
Trigger: GGGAACCAAATGGCTGGCCAAGGACTTGTTCTTGTA...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045004.11
CDS-3UTR CAA 90 bp CATGTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGCGTGTCTGTTTTCTTaGATTGTGCTTATTAGTGGA +
Preference number: 5 (lower is better)
Translates to: HVWPLNRKYLNSTSGLWQACLFS*IVLISG
Trigger: TCCACTAATAAGCACAATCAAAGAAAACAGACACGC...CTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGGCGGCATCTGGACTTaGCTAAGCACCTTGAAACAT +
Preference number: 5 (lower is better)
Translates to: LEYITRPLRETCLAAEQKGGIWT*LSTLKH
Trigger: ATGTTTCAAGGTGCTTAGCAAAGTCCAGATGCCGCC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGATTCACTTTCATATaGCTTGACCAGATCGTCCAA +
Preference number: 5 (lower is better)
Translates to: RKYLNSTSGLWQGWFKSPRFTFI*LDQIVQ
Trigger: TTGGACGATCTGGTCAAGCAATATGAAAGTGAATCT...GGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp TTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTACTGATGGTGAACTaGACAGATTCACTTTCATAT +
Preference number: 5 (lower is better)
Translates to: LAAEQKIPEQHFRTVAGLVLMVN*TDSLSY
Trigger: ATATGAAAGTGAATCTGTCAAGTTCACCATCAGTAC...CAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTGTACTGATGGTGAACTaGACAGATTCACTTTCATAT +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGVLMVN*TDSLSY
Trigger: ATATGAAAGTGAATCTGTCAAGTTCACCATCAGTAC...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp AAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAATCCCCCAGCAGATCTTCCTCAAGTaGTATGAATGTCTGGATCAA +
Preference number: 5 (lower is better)
Translates to: KIPEQHFRTVAGLVQIPQQIFLK*YECLDQ
Trigger: TTGATCCAGACATTCATACAACTTGAGGAAGATCTG...CTGGGGGATTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp GTTTGGCCGCTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTTTTGTGGCTGTTTCTaGATTCATCTTCCTCTTTCA +
Preference number: 5 (lower is better)
Translates to: VWPLNRKYLNSTSGLWQGFCGCF*IHLPLS
Trigger: TGAAAGAGGAAGATGAATCAAGAAACAGCCACAAAA...ACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAGCGGCCAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGAACAGAAAATACCTGAACAGCACTTCAGGACTGTGGCAGGGTTGGTTCAAAAGCTGGCTTTGGGTTTaGAAAGCACAGTTTAACGTG +
Preference number: 5 (lower is better)
Translates to: LNRKYLNSTSGLWQGWFKSWLWV*KAQFNV
Trigger: CACGTTAAACTGTGCTTTCAAAACCCAAAGCCAGCT...TTTGAACCAACCCTGCCACAGTCCTGAAGTGCTGTTCAGGTATTTTCTGTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAACTTTGCTAAGCACCTaGAAACATGTCTTCAAGGCG +
Preference number: 5 (lower is better)
Translates to: LEYITRPLRETCLAAEQKTLLST*KHVFKA
Trigger: CGCCTTGAAGACATGTTTCAAGGTGCTTAGCAAAGT...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS-3UTR CAA 90 bp CTGGAATATATTACAAGGCCTTTAAGGGAGACATGTTTGGCCGCTGAACAGAAAGCTGCAAAGATGTTCTaGCTGGCAAAGTTTGCAATG +
Preference number: 5 (lower is better)
Translates to: LEYITRPLRETCLAAEQKAAKMF*LAKFAM
Trigger: CATTGCAAACTTTGCCAGCAAGAACATCTTTGCAGC...TTTCTGTTCAGCGGCCAAACATGTCTCCCTTAAAGGCCTTGTAATATATTCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 90 bp TCACTTTCATATTGCTTGACCAGATCGTCCAAATTTTTGCAAATCTaGATAACAAAGGGTGTCACTGTCCAGCCCAGAGACTTTCCAAAG +
Preference number: 5 (lower is better)
Translates to: SLSYCLTRSSKFLQI*ITKGVTVQPRDFPK
Trigger: CTTTGGAAAGTCTCTGGGCTGGACAGTGACACCCTTTGTTATCCAGATTTGCAAAAATTTGGACGATCTGGTCAAGCAATATGAAAGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp GGCTCTCCTCAAAGAGGCTGTCCTCCGCGAGGAGCCTaGCGCCCCGGTCGGCGGTGGCCAGGCCGTAGCGCT +
Preference number: 6 (lower is better)
Translates to: GSPQRGCPPRGA*RPGRRWPGRSA
Trigger: AGCGCTACGGCCTGGCCACCGCCGACCGGGGCGGCAGGCTCCTCGCGGAGGACAGCCTCTTTGAGGAGAGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp TGTCCTCCGCGAGGAGCCTGCCGCCCCGGTCGGCGGTaGCCAGGCCGTAGCGCTTCTGGCTGGTGTACATGG +
Preference number: 6 (lower is better)
Translates to: CPPRGACRPGRR*PGRSASGWCTW
Trigger: CCATGTACACCAGCCAGAAGCGCTACGGCCTGGCCACCGCCGACCGGGGCGGCAGGCTCCTCGCGGAGGACA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp CCCGGTCGGCGGTGGCCAGGCCGTAGCGCTTCTGGCTaGTGTACATGGACGCGGACAGCGAGAGCAGGACGA +
Preference number: 6 (lower is better)
Translates to: PGRRWPGRSASG*CTWTRTARAGR
Trigger: TCGTCCTGCTCTCGCTGTCCGCGTCCATGTACACCAGCCAGAAGCGCTACGGCCTGGCCACCGCCGACCGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp CCCGAGGGAGAGCGCTCGCACCAGCCAGCCCTGGGCTaGTGCACTGATAGCACCGTCTGTGCAAGCCAGGCT +
Preference number: 6 (lower is better)
Translates to: PEGERSHQPALG*CTDSTVCASQA
Trigger: AGCCTGGCTTGCACAGACGGTGCTATCAGTGCAGCAGCCCAGGGCTGGCTGGTGCGAGCGCTCTCCCTCGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp TGGGCTGGAGCAACAGCAGGAGCATGGGTTCGAGGATaGGGGCCACATCCCCGAGGGAGAGCGCTCGCACCA +
Preference number: 6 (lower is better)
Translates to: WAGATAGAWVRG*GPHPRGRALAP
Trigger: TGGTGCGAGCGCTCTCCCTCGGGGATGTGGCCCGCATCCTCGAACCCATGCTCCTGCTGTTGCTCCAGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp ACATCCCCGAGGGAGAGCGCTCGCACCAGCCAGCCCTaGGCTGCTGCACTGATAGCACCGTCTGTGCAAGCC +
Preference number: 6 (lower is better)
Translates to: TSPRESARTSQP*AAALIAPSVQA
Trigger: GGCTTGCACAGACGGTGCTATCAGTGCAGCAGCCCAGGGCTGGCTGGTGCGAGCGCTCTCCCTCGGGGATGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp TGGCCGATGAGGGCCTCCTGGTGGCGTGCCAGGAGGTaGGAGATGAGGTTGAGGTGCGCGGTGGAGCTGGTG +
Preference number: 6 (lower is better)
Translates to: WPMRASWWRARR*EMRLRCAVELV
Trigger: CACCAGCTCCACCGCGCACCTCAACCTCATCTCCAACCTCCTGGCACGCCACCAGGAGGCCCTCATCGGCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 90 bp CCCTGGCCCAGGTGGTGCTCCAGGACGATGAGGGCCTGCAGCAGCTaGAGCAGCTCGATCTGCAGTGGGTGCTCGCTCCAGATCTGGTCC +
Preference number: 6 (lower is better)
Translates to: PWPRWCSRTMRACSS*SSSICSGCSLQIWS
Trigger: GGACCAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAAGCTGCTGCAGGCCCTCATCGTCCTGGAGCACCACCTGGGCCAGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp TCGTCTCTTTCCGCAGACACCCGAGGCACCCTGAGGTaGTCAGAGAGCTCTGGCGACGAGGCGCTGAGCCCA +
Preference number: 6 (lower is better)
Translates to: SSLSADTRGTLR*SESSGDEALSP
Trigger: TGGGCTCAGCGCCTCGTCGCCAGAGCTCTCTGAGCACCTCAGGGTGCCTCGGGTGTCTGCGGAAAGAGACGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 72 bp GAGGGAGAGCGCTCGCACCAGCCAGCCCTGGGCTGCTaGACTGATAGCACCGTCTGTGCAAGCCAGGCTATC +
Preference number: 6 (lower is better)
Translates to: EGERSHQPALGC*TDSTVCASQAI
Trigger: GATAGCCTGGCTTGCACAGACGGTGCTATCAGTGCAGCAGCCCAGGGCTGGCTGGTGCGAGCGCTCTCCCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp CTGGAAGGCTGCCAGCAAGGCCGCTCGCTTGGAGTATaGCCTGCCCCCGATGGGGATCGGAGCACAGCAGTT +
Preference number: 6 (lower is better)
Translates to: LEGCQQGRSLGV*PAPDGDRSTAV
Trigger: AACTGCTGTGCTCCGATCCCCATCGGGGGCAGGGCATACTCCAAGCGAGCGGCCTTGCTGGCAGCCTTCCAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp CCTGGCATTGGACCTGGGGCTTTCTGGCTGGAAGGCTaGCAGCAAGGCCGCTCGCTTGGAGTATGCCCTGCC +
Preference number: 6 (lower is better)
Translates to: PGIGPGAFWLEG*QQGRSLGVCPA
Trigger: GGCAGGGCATACTCCAAGCGAGCGGCCTTGCTGGCAGCCTTCCAGCCAGAAAGCCCCAGGTCCAATGCCAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp TTTCTGGCTGGAAGGCTGCCAGCAAGGCCGCTCGCTTaGAGTATGCCCTGCCCCCGATGGGGATCGGAGCAC +
Preference number: 6 (lower is better)
Translates to: FLAGRLPARPLA*SMPCPRWGSEH
Trigger: GTGCTCCGATCCCCATCGGGGGCAGGGCATACTCCAAGCGAGCGGCCTTGCTGGCAGCCTTCCAGCCAGAAA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp CGGTGGCCAGGCCGTAGCGCTTCTGGCTGGTGTACATaGACGCGGACAGCGAGAGCAGGACGAACTCCTGGA +
Preference number: 6 (lower is better)
Translates to: RWPGRSASGWCT*TRTARAGRTPG
Trigger: TCCAGGAGTTCGTCCTGCTCTCGCTGTCCGCGTCCATGTACACCAGCCAGAAGCGCTACGGCCTGGCCACCG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp CTTTCTGGCTGGAAGGCTGCCAGCAAGGCCGCTCGCTaGGAGTATGCCCTGCCCCCGATGGGGATCGGAGCA +
Preference number: 6 (lower is better)
Translates to: LSGWKAASKAAR*EYALPPMGIGA
Trigger: TGCTCCGATCCCCATCGGGGGCAGGGCATACTCCAAGCGAGCGGCCTTGCTGGCAGCCTTCCAGCCAGAAAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp GCCTCCTGGTGGCGTGCCAGGAGGTTGGAGATGAGGTaGAGGTGCGCGGTGGAGCTGGTGTCTATGCCCGTC +
Preference number: 6 (lower is better)
Translates to: ASWWRARRLEMR*RCAVELVSMPV
Trigger: GACGGGCATAGACACCAGCTCCACCGCGCACCTCAACCTCATCTCCAACCTCCTGGCACGCCACCAGGAGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 90 bp CCGATGAGGGCCTCCTGGTGGCGTGCCAGGAGGTTGGAGATGAGGTaGAGGTGCGCGGTGGAGCTGGTGTCTATGCCCGTCCTGGACACA +
Preference number: 6 (lower is better)
Translates to: PMRASWWRARRLEMR*RCAVELVSMPVLDT
Trigger: TGTGTCCAGGACGGGCATAGACACCAGCTCCACCGCGCACCTCAACCTCATCTCCAACCTCCTGGCACGCCACCAGGAGGCCCTCATCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 72 bp GCACGTACTGCATGGCACCGATGGCCTGCTGGAAGTTaGGAGCCCTCTGCCACTCTCGGGATAGGGCCGGCT +
Preference number: 6 (lower is better)
Translates to: ARTAWHRWPAGS*EPSATLGIGPA
Trigger: AGCCGGCCCTATCCCGAGAGTGGCAGAGGGCTCTCAACTTCCAGCAGGCCATCGGTGCCATGCAGTACGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp AGGCAGGGAGGCGGATGGAAGGGCTTGTCAGAACGCTaGCCCACAGGGCAGCATAGAACACCTCTCGCCCCA +
Preference number: 6 (lower is better)
Translates to: RQGGGWKGLSER*PTGQHRTPLAP
Trigger: TGGGGCGAGAGGTGTTCTATGCTGCCCTGTGGGGCAGCGTTCTGACAAGCCCTTCCATCCGCCTCCCTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 72 bp TGTCCTCGAGGCAGGCGTTCCTCAGGGGCACCCTCCTaGGGCTCAGATTCACCACACGCCTCTTTGCACGTG +
Preference number: 6 (lower is better)
Translates to: CPRGRRSSGAPS*GSDSPHASLHV
Trigger: CACGTGCAAAGAGGCGTGTGGTGAATCTGAGCCGCAGGAGGGTGCCCCTGAGGAACGCCTGCCTCGAGGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp GGGTGGGGCTGCACGTACTGCATGGCACCGATGGCCTaGTGGAAGTTGAGAGCCCTCTGCCACTCTCGGGAT +
Preference number: 6 (lower is better)
Translates to: GWGCTYCMAPMA*WKLRALCHSRD
Trigger: ATCCCGAGAGTGGCAGAGGGCTCTCAACTTCCAGCAGGCCATCGGTGCCATGCAGTACGTGCAGCCCCACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp AGACACCCGAGGCACCCTGAGGTGCTCAGAGAGCTCTaGCGACGAGGCGCTGAGCCCAATCCCACTGTCTTC +
Preference number: 6 (lower is better)
Translates to: RHPRHPEVLREL*RRGAEPNPTVF
Trigger: GAAGACAGTGGGATTGGGCTCAGCGCCTCGTCGCCAGAGCTCTCTGAGCACCTCAGGGTGCCTCGGGTGTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp GCAAGGCCGCTCGCTTGGAGTATGCCCTGCCCCCGATaGGGATCGGAGCACAGCAGTTTTCCTCGTGGCTCA +
Preference number: 6 (lower is better)
Translates to: ARPLAWSMPCPR*GSEHSSFPRGS
Trigger: TGAGCCACGAGGAAAACTGCTGTGCTCCGATCCCCATCGGGGGCAGGGCATACTCCAAGCGAGCGGCCTTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp TTCCTGCCAGGGTGCTCGGTGCTCTGTGTCTGGCCCTaGTTGCCCTTCCCTGGGGGCTCCTCGGGCTTGTTT +
Preference number: 6 (lower is better)
Translates to: FLPGCSVLCVWP*LPFPGGSSGLF
Trigger: AAACAAGCCCGAGGAGCCCCCAGGGAAGGGCAACAAGGGCCAGACACAGAGCACCGAGCACCCTGGCAGGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CAA 72 bp AGGTGGTGCTCCAGGACGATGAGGGCCTGCAGCAGCTaGAGCAGCTCGATCTGCAGTGGGTGCTCGCTCCAG +
Preference number: 6 (lower is better)
Translates to: RWCSRTMRACSS*SSSICSGCSLQ
Trigger: CTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAAGCTGCTGCAGGCCCTCATCGTCCTGGAGCACCACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 72 bp CCTGGGTCTGCAGCTTGCCATAAAAGCTCTGGCCGATaGGGGCCTCCTGGTGGCGTGCCAGGAGGTTGGAGA +
Preference number: 6 (lower is better)
Translates to: PGSAACHKSSGR*GPPGGVPGGWR
Trigger: TCTCCAACCTCCTGGCACGCCACCAGGAGGCCCTCATCGGCCAGAGCTTTTATGGCAAGCTGCAGACCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp GCTGGGACGTGTTTGCCACGGGGACCATCTTGGTCTTaGTGTGGCGCCGTGCCTGCTTTCTGTTCCACACGG +
Preference number: 6 (lower is better)
Translates to: AGTCLPRGPSWS*CGAVPAFCSTR
Trigger: CCGTGTGGAACAGAAAGCAGGCACGGCGCCACAGCAAGACCAAGATGGTCCCCGTGGCAAACACGTCCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS GCA 72 bp ACAGACCAGGTCGACAAGGGTGTGCTGGGACGTGTTTaGCACGGGGACCATCTTGGTCTTGCTGTGGCGCCG +
Preference number: 6 (lower is better)
Translates to: TDQVDKGVLGRV*HGDHLGLAVAP
Trigger: CGGCGCCACAGCAAGACCAAGATGGTCCCCGTGGCAAACACGTCCCAGCACACCCTTGTCGACCTGGTCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS GCA 72 bp AGAAGCAGAAAGTATCCAGGGGGAGCCAGGTTCAGCTaGGCAGCCTCCTTCAGGACGCCCAGGAGGGAAGGG +
Preference number: 6 (lower is better)
Translates to: RSRKYPGGARFS*AASFRTPRREG
Trigger: CCCTTCCCTCCTGGGCGTCCTGAAGGAGGCTGCGCAGCTGAACCTGGCTCCCCCTGGATACTTTCTGCTTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS CCA 72 bp GAGGGCCTGCAGCAGCTTGAGCAGCTCGATCTGCAGTaGGTGCTCGCTCCAGATCTGGTCCTGCCCCAGATT +
Preference number: 6 (lower is better)
Translates to: EGLQQLEQLDLQ*VLAPDLVLPQI
Trigger: AATCTGGGGCAGGACCAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAAGCTGCTGCAGGCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp TGGGGCTGCACGTACTGCATGGCACCGATGGCCTGCTaGAAGTTGAGAGCCCTCTGCCACTCTCGGGATAGG +
Preference number: 6 (lower is better)
Translates to: WGCTYCMAPMAC*KLRALCHSRDR
Trigger: CCTATCCCGAGAGTGGCAGAGGGCTCTCAACTTCCAGCAGGCCATCGGTGCCATGCAGTACGTGCAGCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp TGCTGTGGCGCCGTGCCTGCTTTCTGTTCCACACGGTaGCAACCGCAGCTATCAGCTGGACCCCAAGATGGC +
Preference number: 6 (lower is better)
Translates to: CCGAVPAFCSTR*QPQLSAGPQDG
Trigger: GCCATCTTGGGGTCCAGCTGATAGCTGCGGTTGCCACCGTGTGGAACAGAAAGCAGGCACGGCGCCACAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CAA 90 bp ACAAGGGTGTGCTGGGACGTGTTTGCCACGGGGACCATCTTGGTCTaGCTGTGGCGCCGTGCCTGCTTTCTGTTCCACACGGTGGCAACC +
Preference number: 6 (lower is better)
Translates to: TRVCWDVFATGTILV*LWRRACFLFHTVAT
Trigger: GGTTGCCACCGTGTGGAACAGAAAGCAGGCACGGCGCCACAGCAAGACCAAGATGGTCCCCGTGGCAAACACGTCCCAGCACACCCTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS TCA 72 bp TCACCAGCTGCAGCACTGAGTCTGTCTGCAGGGTGCTaGGAGCACAGACCAGGTCGACAAGGGTGTGCTGGG +
Preference number: 6 (lower is better)
Translates to: SPAAALSLSAGC*EHRPGRQGCAG
Trigger: CCCAGCACACCCTTGTCGACCTGGTCTGTGCTCTCAGCACCCTGCAGACAGACTCAGTGCTGCAGCTGGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS GCA 72 bp ATAAAAGCTCTGGCCGATGAGGGCCTCCTGGTGGCGTaGCAGGAGGTTGGAGATGAGGTTGAGGTGCGCGGT +
Preference number: 6 (lower is better)
Translates to: IKALADEGLLVA*QEVGDEVEVRG
Trigger: ACCGCGCACCTCAACCTCATCTCCAACCTCCTGGCACGCCACCAGGAGGCCCTCATCGGCCAGAGCTTTTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp GCCTGCAGCAGCTTGAGCAGCTCGATCTGCAGTGGGTaGTCGCTCCAGATCTGGTCCTGCCCCAGATTGATG +
Preference number: 6 (lower is better)
Translates to: ACSSLSSSICSG*SLQIWSCPRLM
Trigger: CATCAATCTGGGGCAGGACCAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTGCTCAAGCTGCTGCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp GTCCAGCCCAGAGACTTTCCAAAGTATGGCAAGGAATaGGTGACCAGGCTCACCCAGGCGGGGTGCATGCCG +
Preference number: 6 (lower is better)
Translates to: VQPRDFPKYGKE*VTRLTQAGCMP
Trigger: CGGCATGCACCCCGCCTGGGTGAGCCTGGTCACGCATTCCTTGCCATACTTTGGAAAGTCTCTGGGCTGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp AGGGTGCTGAGAGCACAGACCAGGTCGACAAGGGTGTaGTGGGACGTGTTTGCCACGGGGACCATCTTGGTC +
Preference number: 6 (lower is better)
Translates to: RVLRAQTRSTRV*WDVFATGTILV
Trigger: GACCAAGATGGTCCCCGTGGCAAACACGTCCCAGCACACCCTTGTCGACCTGGTCTGTGCTCTCAGCACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 72 bp GACGTGTTTGCCACGGGGACCATCTTGGTCTTGCTGTaGCGCCGTGCCTGCTTTCTGTTCCACACGGTGGCA +
Preference number: 6 (lower is better)
Translates to: DVFATGTILVLL*RRACFLFHTVA
Trigger: TGCCACCGTGTGGAACAGAAAGCAGGCACGGCGCCACAGCAAGACCAAGATGGTCCCCGTGGCAAACACGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CAA 72 bp TGCTGGGACGTGTTTGCCACGGGGACCATCTTGGTCTaGCTGTGGCGCCGTGCCTGCTTTCTGTTCCACACG +
Preference number: 6 (lower is better)
Translates to: CWDVFATGTILV*LWRRACFLFHT
Trigger: CGTGTGGAACAGAAAGCAGGCACGGCGCCACAGCAAGACCAAGATGGTCCCCGTGGCAAACACGTCCCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CAA 90 bp GCTGAGTTCTCCTGCTTGAGACACTGGATGGACGTCCTCTGGGTTTaGGGCTGGAGCAACAGCAGGAGCATGGGTTCGAGGATGCGGGCC +
Preference number: 6 (lower is better)
Translates to: AEFSCLRHWMDVLWV*GWSNSRSMGSRMRA
Trigger: GGCCCGCATCCTCGAACCCATGCTCCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 72 bp GCTTCTCCCTCTGCTGCTTCAACAGCCTCGATGTGGTaGTGGCTTGGAGCTCCACGTCAGCCTCCTCGTCAC +
Preference number: 6 (lower is better)
Translates to: ASPSAASTASMW*WLGAPRQPPRH
Trigger: GTGACGAGGAGGCTGACGTGGAGCTCCAAGCCATCACCACATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 72 bp AGCCCAGAGACTTTCCAAAGTATGGCAAGGAATGCGTaGCCAGGCTCACCCAGGCGGGGTGCATGCCGTAGC +
Preference number: 6 (lower is better)
Translates to: SPETFQSMARNA*PGSPRRGACRS
Trigger: GCTACGGCATGCACCCCGCCTGGGTGAGCCTGGTCACGCATTCCTTGCCATACTTTGGAAAGTCTCTGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 72 bp GGGGAAGGTAGAGGTGGTACTGGTCAAGCTCGCCACTaGAGACGGCAAAAGCCTGGCGCTTCAGCAGCATGG +
Preference number: 6 (lower is better)
Translates to: GEGRGGTGQARH*RRQKPGASAAW
Trigger: CCATGCTGCTGAAGCGCCAGGCTTTTGCCGTCTTCAGTGGCGAGCTTGACCAGTACCACCTCTACCTTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS TCA 72 bp TGCTGCTACCATGGGCTGAGTGGCCCTCATCCCCTTTaGTCTGCGCTGGCCTCTTCACCACCTCCTTCACCA +
Preference number: 6 (lower is better)
Translates to: CCYHGLSGPHPL*SALASSPPPSP
Trigger: TGGTGAAGGAGGTGGTGAAGAGGCCAGCGCAGATCAAAGGGGATGAGGGCCACTCAGCCCATGGTAGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228261.2
CDS GCA 72 bp GGCCAGAGCTCGTGTCTGCAGACTCTGTGTGCTCACTaGTATCCCCGCCACCAGAGGTCATCCTGTCTGGAA +
Preference number: 6 (lower is better)
Translates to: GQSSCLQTLCAH*YPRHQRSSCLE
Trigger: TTCCAGACAGGATGACCTCTGGTGGCGGGGATAGCAGTGAGCACACAGAGTCTGCAGACACGAGCTCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp TCAGTGTGGCCAGAGCTCGTGTCTGCAGACTCTGTGTaGTCACTGCTATCCCCGCCACCAGAGGTCATCCTG +
Preference number: 6 (lower is better)
Translates to: SVWPELVSADSV*SLLSPPPEVIL
Trigger: CAGGATGACCTCTGGTGGCGGGGATAGCAGTGAGCACACAGAGTCTGCAGACACGAGCTCTGGCCACACTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp ACCACCTCCTTCACCAGCTGCAGCACTGAGTCTGTCTaGAGGGTGCTGAGAGCACAGACCAGGTCGACAAGG +
Preference number: 6 (lower is better)
Translates to: TTSFTSCSTESV*RVLRAQTRSTR
Trigger: CCTTGTCGACCTGGTCTGTGCTCTCAGCACCCTGCAGACAGACTCAGTGCTGCAGCTGGTGAAGGAGGTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 72 bp TGTGGTTCACCACAAATAAGGAGGCAGGGAGGCGGATaGAAGGGCTTGTCAGAACGCTGCCCCACAGGGCAG +
Preference number: 6 (lower is better)
Translates to: CGSPQIRRQGGG*KGLSERCPTGQ
Trigger: CTGCCCTGTGGGGCAGCGTTCTGACAAGCCCTTCCATCCGCCTCCCTGCCTCCTTATTTGTGGTGAACCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp CACCCCATTCGGTTGCTGCCTTCCTGTGTGGGCTGCTaGGCACAGACGACAGCGACTCTGAGCTTCTTGTCT +
Preference number: 6 (lower is better)
Translates to: HPIRLLPSCVGC*AQTTATLSFLS
Trigger: AGACAAGAAGCTCAGAGTCGCTGTCGTCTGTGCCCAGCAGCCCACACAGGAAGGCAGCAACCGAATGGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp AGGCTTAACCTGGCATTGGACCTGGGGCTTTCTGGCTaGAAGGCTGCCAGCAAGGCCGCTCGCTTGGAGTAT +
Preference number: 6 (lower is better)
Translates to: RLNLALDLGLSG*KAASKAARLEY
Trigger: ATACTCCAAGCGAGCGGCCTTGCTGGCAGCCTTCCAGCCAGAAAGCCCCAGGTCCAATGCCAGGTTAAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp TACATGGACGCGGACAGCGAGAGCAGGACGAACTCCTaGACCTTGCACCTCTGCAGCAGGCTGTGGATGAAC +
Preference number: 6 (lower is better)
Translates to: YMDADSESRTNS*TLHLCSRLWMN
Trigger: GTTCATCCACAGCCTGCTGCAGAGGTGCAAGGTCCAGGAGTTCGTCCTGCTCTCGCTGTCCGCGTCCATGTA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp GGGTGTCACTGTCCAGCCCAGAGACTTTCCAAAGTATaGCAAGGAATGCGTGACCAGGCTCACCCAGGCGGG +
Preference number: 6 (lower is better)
Translates to: GCHCPAQRLSKV*QGMRDQAHPGG
Trigger: CCCGCCTGGGTGAGCCTGGTCACGCATTCCTTGCCATACTTTGGAAAGTCTCTGGGCTGGACAGTGACACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp GTGCTGAGAGCACAGACCAGGTCGACAAGGGTGTGCTaGGACGTGTTTGCCACGGGGACCATCTTGGTCTTG +
Preference number: 6 (lower is better)
Translates to: VLRAQTRSTRVC*DVFATGTILVL
Trigger: CAAGACCAAGATGGTCCCCGTGGCAAACACGTCCCAGCACACCCTTGTCGACCTGGTCTGTGCTCTCAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 72 bp CACTGTAAACGGAGGGGGCAGAAGCAGATACCATGGTaGAGGCTTCAGCAGCACTGTGCACGTCGTCCTCGG +
Preference number: 6 (lower is better)
Translates to: HCKRRGQKQIPW*RLQQHCARRPR
Trigger: CCGAGGACGACGTGCACAGTGCTGCTGAAGCCTCCACCATGGTATCTGCTTCTGCCCCCTCCGTTTACAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
CDS CAA 90 bp TGTGGTTCACCACAAATAAGGAGGCAGGGAGGCGGATGGAAGGGCTaGTCAGAACGCTGCCCCACAGGGCAGCATAGAACACCTCTCGCC +
Preference number: 6 (lower is better)
Translates to: CGSPQIRRQGGGWKG*SERCPTGQHRTPLA
Trigger: GGCGAGAGGTGTTCTATGCTGCCCTGTGGGGCAGCGTTCTGACAAGCCCTTCCATCCGCCTCCCTGCCTCCTTATTTGTGGTGAACCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CAA 90 bp CTGCTTCTCCCTCTGCTGCTTCAACAGCCTCGATGTGGTGATGGCTaGGAGCTCCACGTCAGCCTCCTCGTCACTGGAAAACGACTCGGA +
Preference number: 6 (lower is better)
Translates to: LLLPLLLQQPRCGDG*ELHVSLLVTGKRLG
Trigger: TCCGAGTCGTTTTCCAGTGACGAGGAGGCTGACGTGGAGCTCCAAGCCATCACCACATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 90 bp ATGGAGACCAGCTGTGCTGTAATCCTAATGAGGACCTCCACGCTCTaGACCTGCACGTCGCGGTTGCCAAGGATGTCCCTGTGGCAGACC +
Preference number: 6 (lower is better)
Translates to: METSCAVILMRTSTL*TCTSRLPRMSLWQT
Trigger: GGTCTGCCACAGGGACATCCTTGGCAACCGCGACGTGCAGGTCAAGAGCGTGGAGGTCCTCATTAGGATTACAGCACAGCTGGTCTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 72 bp CCTGTGTGGGCTGCTGGGCACAGACGACAGCGACTCTaGGCTTCTTGTCTTAAAGGGAGACCCTCGAACCGT +
Preference number: 6 (lower is better)
Translates to: PVWAAGHRRQRL*ASCLKGRPSNR
Trigger: ACGGTTCGAGGGTCTCCCTTTAAGACAAGAAGCTCAGAGTCGCTGTCGTCTGTGCCCAGCAGCCCACACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 72 bp TTGTTCCCTTGTCAGGGTCCAGGAGGGCATGGCAGATaGTATCCTCACAGATGTTGGCAGTCGGGGCCAGGC +
Preference number: 6 (lower is better)
Translates to: LFPCQGPGGHGR*YPHRCWQSGPG
Trigger: GCCTGGCCCCGACTGCCAACATCTGTGAGGATATCATCTGCCATGCCCTCCTGGACCCTGACAAGGGAACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp TGTGTTCTCACTGTCAGTGTGGCCAGAGCTCGTGTCTaGAGACTCTGTGTGCTCACTGCTATCCCCGCCACC +
Preference number: 6 (lower is better)
Translates to: CVLTVSVARARV*RLCVLTAIPAT
Trigger: GGTGGCGGGGATAGCAGTGAGCACACAGAGTCTGCAGACACGAGCTCTGGCCACACTGACAGTGAGAACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp AGCGAGAGCAGGACGAACTCCTGGACCTTGCACCTCTaGAGCAGGCTGTGGATGAACTCCGTGTTCTTCCCT +
Preference number: 6 (lower is better)
Translates to: SESRTNSWTLHL*SRLWMNSVFFP
Trigger: AGGGAAGAACACGGAGTTCATCCACAGCCTGCTGCAGAGGTGCAAGGTCCAGGAGTTCGTCCTGCTCTCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp TCGATCTGCAGTGGGTGCTCGCTCCAGATCTGGTCCTaGCCCAGATTGATGAGGCTCTCCTCAAAGAGGCTG +
Preference number: 6 (lower is better)
Translates to: SICSGCSLQIWS*PRLMRLSSKRL
Trigger: CAGCCTCTTTGAGGAGAGCCTCATCAATCTGGGGCAGGACCAGATCTGGAGCGAGCACCCACTGCAGATCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp GGCGCTGAGCCCAATCCCACTGTCTTCAGACTTCAGTaGAGGAAAGGAAGGTTCCTCATCACCCGCCACCAC +
Preference number: 6 (lower is better)
Translates to: GAEPNPTVFRLQ*RKGRFLITRHH
Trigger: GTGGTGGCGGGTGATGAGGAACCTTCCTTTCCTCCACTGAAGTCTGAAGACAGTGGGATTGGGCTCAGCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp AGCAGCTCGATCTGCAGTGGGTGCTCGCTCCAGATCTaGTCCTGCCCCAGATTGATGAGGCTCTCCTCAAAG +
Preference number: 6 (lower is better)
Translates to: SSSICSGCSLQI*SCPRLMRLSSK
Trigger: CTTTGAGGAGAGCCTCATCAATCTGGGGCAGGACCAGATCTGGAGCGAGCACCCACTGCAGATCGAGCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp CACTGTAAACGGAGGGGGCAGAAGCAGATACCATGGTaGAGGCTTCAGCAGCACCTGTGTGCACGTCGTCCT +
Preference number: 6 (lower is better)
Translates to: HCKRRGQKQIPW*RLQQHLCARRP
Trigger: AGGACGACGTGCACACAGGTGCTGCTGAAGCCTCCACCATGGTATCTGCTTCTGCCCCCTCCGTTTACAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227156.2
CDS CAA 72 bp TCCTGCTTGAGACACTGGATGGACGTCCTCTGGGTTTaGGGCTGGAGCAACAGCAGGAGCATGGGTTCGAGG +
Preference number: 6 (lower is better)
Translates to: SCLRHWMDVLWV*GWSNSRSMGSR
Trigger: CCTCGAACCCATGCTCCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 90 bp CGCCGTGGTAGGAGGGAATACTTCAGGTTGCTCTGGAGAGCCTTGTaGAGCTTGCCGAGCGAAGAGATGAGATCTGCCCATTCGCTGGAG +
Preference number: 6 (lower is better)
Translates to: RRGRREYFRLLWRAL*SLPSEEMRSAHSLE
Trigger: CTCCAGCGAATGGGCAGATCTCATCTCTTCGCTCGGCAAGCTCAACAAGGCTCTCCAGAGCAACCTGAAGTATTCCCTCCTACCACGGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000228846.2
CDS CAA 90 bp TCCTCAGGGGCACCCTCCTGCGGCTCAGATTCACCACACGCCTCTTaGCACGTGGGCTTCTTCCTGTTAAACCAACGGTGTAAATCCTCG +
Preference number: 6 (lower is better)
Translates to: SSGAPSCGSDSPHAS*HVGFFLLNQRCKSS
Trigger: CGAGGATTTACACCGTTGGTTTAACAGGAAGAAGCCCACGTGCAAAGAGGCGTGTGGTGAATCTGAGCCGCAGGAGGGTGCCCCTGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 90 bp ACGTCAGCCTCCTCGTCACTGGAAAACGACTCGGAAGCCTGTGTCTaGTCTGAGTCTGCTCGCACCAGGCTTAACCTGGCATTGGACCTG +
Preference number: 6 (lower is better)
Translates to: TSASSSLENDSEACV*SESARTRLNLALDL
Trigger: CAGGTCCAATGCCAGGTTAAGCCTGGTGCGAGCAGACTCAGACAAGACACAGGCTTCCGAGTCGTTTTCCAGTGACGAGGAGGCTGACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 72 bp GCATGCACTTCTGCTCCTTGCCTGGTGAGTCCCTGCTaGTGTGGTTCACCACAAATAAGGAGGCAGGGAGGC +
Preference number: 6 (lower is better)
Translates to: ACTSAPCLVSPC*CGSPQIRRQGG
Trigger: GCCTCCCTGCCTCCTTATTTGTGGTGAACCACATCAGCAGGGACTCACCAGGCAAGGAGCAGAAGTGCATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 72 bp CAGGAATGTCCACCAGGGGAGACTTCTCATCCCCTTTaGTCTGCGCTGGCCTCTTCACCACCTCCTTCACCA +
Preference number: 6 (lower is better)
Translates to: QECPPGETSHPL*SALASSPPPSP
Trigger: TGGTGAAGGAGGTGGTGAAGAGGCCAGCGCAGATCAAAGGGGATGAGAAGTCTCCCCTGGTGGACATTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS GCA 72 bp CTTCCCTTCCGCCGACTTGGCCATGGAGACCAGCTGTaGTGTAATCCTAATGAGGACCTCCACGCTCTTGAC +
Preference number: 6 (lower is better)
Translates to: LPFRRLGHGDQL*CNPNEDLHALD
Trigger: GTCAAGAGCGTGGAGGTCCTCATTAGGATTACAGCACAGCTGGTCTCCATGGCCAAGTCGGCGGAAGGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp TCCTTCAGGACGCCCAGGAGGGAAGGGAAGGCCTCCTaGAGGTCTGGTATGGACAGTCTTTGGATGAAAGCA +
Preference number: 6 (lower is better)
Translates to: SFRTPRREGKAS*RSGMDSLWMKA
Trigger: TGCTTTCATCCAAAGACTGTCCATACCAGACCTGCAGGAGGCCTTCCCTTCCCTCCTGGGCGTCCTGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS GCA 72 bp GAAGCAGATACCATGGTGGAGGCTTCAGCAGCACTGTaGACGTCGTCCTCGGCATCTGACTCTTCCAGAGAG +
Preference number: 6 (lower is better)
Translates to: EADTMVEASAAL*TSSSASDSSRE
Trigger: CTCTCTGGAAGAGTCAGATGCCGAGGACGACGTGCACAGTGCTGCTGAAGCCTCCACCATGGTATCTGCTTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
CDS CCA 72 bp CAGTCTTCCTTGGAGCCCACCAACTCAACGACCACCTaGTCAACACCCCATTCGGTTGCTGCCTTCCTGTGT +
Preference number: 6 (lower is better)
Translates to: QSSLEPTNSTTT*STPHSVAAFLC
Trigger: ACACAGGAAGGCAGCAACCGAATGGGGTGTTGACCAGGTGGTCGTTGAGTTGGTGGGCTCCAAGGAAGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp CGAGGGACTGGGAGTGGTTTATCACTTCCAGCAGTGTaGCGATGGCTATGTTCTGGAGGGAGCAGTCGCTCA +
Preference number: 6 (lower is better)
Translates to: RGTGSGLSLPAV*RWLCSGGSSRS
Trigger: TGAGCGACTGCTCCCTCCAGAACATAGCCATCGCCACACTGCTGGAAGTGATAAACCACTCCCAGTCCCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 72 bp GAGTTCTCCTGCTTGAGACACTGGATGGACGTCCTCTaGGTTTTGGGCTGGAGCAACAGCAGGAGCATGGGT +
Preference number: 6 (lower is better)
Translates to: EFSCLRHWMDVL*VLGWSNSRSMG
Trigger: ACCCATGCTCCTGCTGTTGCTCCAGCCCAAAACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGAGAACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp CTCACTGCTATCCCCGCCACCAGAGGTCATCCTGTCTaGAAGGTCCACATAGTAGGGCAGGTCTTCCTCACT +
Preference number: 6 (lower is better)
Translates to: LTAIPATRGHPV*KVHIVGQVFLT
Trigger: AGTGAGGAAGACCTGCCCTACTATGTGGACCTTCCAGACAGGATGACCTCTGGTGGCGGGGATAGCAGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp TTTCTGTTCCACACGGTGGCAACCGCAGCTATCAGCTaGACCCCAAGATGGCCTGTCAAGGGGTTCAGCAAG +
Preference number: 6 (lower is better)
Translates to: FLFHTVATAAIS*TPRWPVKGFSK
Trigger: CTTGCTGAACCCCTTGACAGGCCATCTTGGGGTCCAGCTGATAGCTGCGGTTGCCACCGTGTGGAACAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 72 bp TACTGGTCAAGCTCGCCACTGAAGACGGCAAAAGCCTaGCGCTTCAGCAGCATGGCCTTCTGCTCAAAGCTG +
Preference number: 6 (lower is better)
Translates to: YWSSSPLKTAKA*RFSSMAFCSKL
Trigger: CAGCTTTGAGCAGAAGGCCATGCTGCTGAAGCGCCAGGCTTTTGCCGTCTTCAGTGGCGAGCTTGACCAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CAA 72 bp GCACCCTCCTGCGGCTCAGATTCACCACACGCCTCTTaGCACGTGGGCTTCTTCCTGTTAAACCAACGGTGT +
Preference number: 6 (lower is better)
Translates to: APSCGSDSPHAS*HVGFFLLNQRC
Trigger: ACACCGTTGGTTTAACAGGAAGAAGCCCACGTGCAAAGAGGCGTGTGGTGAATCTGAGCCGCAGGAGGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp CCCGTCCTGGACACAGCCTCAATGAACTCCTTGGGATaGGTCTTAAGCACGGCCTCCAGTACGGAGAAGGCA +
Preference number: 6 (lower is better)
Translates to: PVLDTASMNSLG*VLSTASSTEKA
Trigger: TGCCTTCTCCGTACTGGAGGCCGTGCTTAAGACCAATCCCAAGGAGTTCATTGAGGCTGTGTCCAGGACGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp AGCTGTGCTGTAATCCTAATGAGGACCTCCACGCTCTaGACCTGCACGTCGCGGTTGCCAAGGATGTCCCTG +
Preference number: 6 (lower is better)
Translates to: SCAVILMRTSTL*TCTSRLPRMSL
Trigger: CAGGGACATCCTTGGCAACCGCGACGTGCAGGTCAAGAGCGTGGAGGTCCTCATTAGGATTACAGCACAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 90 bp GTGTCTATGCCCGTCCTGGACACAGCCTCAATGAACTCCTTGGGATaGGTCTTAAGCACGGCCTCCAGTACGGAGAAGGCATACAGGACC +
Preference number: 6 (lower is better)
Translates to: VSMPVLDTASMNSLG*VLSTASSTEKAYRT
Trigger: GGTCCTGTATGCCTTCTCCGTACTGGAGGCCGTGCTTAAGACCAATCCCAAGGAGTTCATTGAGGCTGTGTCCAGGACGGGCATAGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 90 bp GAGCTGGTGTCTATGCCCGTCCTGGACACAGCCTCAATGAACTCCTaGGGATTGGTCTTAAGCACGGCCTCCAGTACGGAGAAGGCATAC +
Preference number: 6 (lower is better)
Translates to: ELVSMPVLDTASMNS*GLVLSTASSTEKAY
Trigger: GTATGCCTTCTCCGTACTGGAGGCCGTGCTTAAGACCAATCCCAAGGAGTTCATTGAGGCTGTGTCCAGGACGGGCATAGACACCAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 90 bp CATGTCCAGGAGAGAAGCCAGAACCTCTGCCAAGAGAGAGAGCGCTaGCACACTGTAAACGGAGGGGGCAGAAGCAGATACCATGGTGGA +
Preference number: 6 (lower is better)
Translates to: HVQERSQNLCQERER*HTVNGGGRSRYHGG
Trigger: TCCACCATGGTATCTGCTTCTGCCCCCTCCGTTTACAGTGTGCAAGCGCTCTCTCTCTTGGCAGAGGTTCTGGCTTCTCTCCTGGACATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS TCA 72 bp CCAGGCAGTGCAGGCGGTAGAACAGCTCTACACAGGTaGTGTGATGTTCACGGGTCTCCTTGTTCAGCTGGT +
Preference number: 6 (lower is better)
Translates to: PGSAGGRTALHR*CDVHGSPCSAG
Trigger: ACCAGCTGAACAAGGAGACCCGTGAACATCACATCACCTGTGTAGAGCTGTTCTACCGCCTGCACTGCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp TTGAACAAGGCCTCGACTGTCTCCTGCTTCTCCCTCTaGTGCTTCAACAGCCTCGATGTGGTGATGGCTTGG +
Preference number: 6 (lower is better)
Translates to: LNKASTVSCFSL*CFNSLDVVMAW
Trigger: CCAAGCCATCACCACATCGAGGCTGTTGAAGCAGCAGAGGGAGAAGCAGGAGACAGTCGAGGCCTTGTTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp CGGCTCGGAAGCTGGGAGCATTGTACGCACTGTGATTaGGCAGGTAAGGAAACACGTAGTATAGCAAGCGGG +
Preference number: 6 (lower is better)
Translates to: RLGSWEHCTHCD*AGKETRSIASG
Trigger: CCCGCTTGCTATACTACGTGTTTCCTTACCTGCGCAATCACAGTGCGTACAATGCTCCCAGCTTCCGAGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 72 bp TCTCGTAGGTTTCTAGGGCTTTTAGGTGAACGCCACTaGGCAGGGCAGGATGCAAGCACTGAGCTAGCCTCT +
Preference number: 6 (lower is better)
Translates to: SRRFLGLLGERH*AGQDASTELAS
Trigger: AGAGGCTAGCTCAGTGCTTGCATCCTGCCCTGCCCAGTGGCGTTCACCTAAAAGCCCTAGAAACCTACGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000228846.2
CDS CCA 72 bp TGTTTCTTCCTTTTACTGGACTCGAGTTCCCGCTGCTaGGCTCCAGATCTAGGTAGGAGGGCGGCATCTGGA +
Preference number: 6 (lower is better)
Translates to: CFFLLLDSSSRC*APDLGRRAASG
Trigger: TCCAGATGCCGCCCTCCTACCTAGATCTGGAGCCCAGCAGCGGGAACTCGAGTCCAGTAAAAGGAAGAAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp CGAACCGTGAACAAGTCCGAAAGCATCTGTTTAAACTaGGGCACGGTGATGGGCTTAGGGTCCCAGGAGCTC +
Preference number: 6 (lower is better)
Translates to: RTVNKSESICLN*GTVMGLGSQEL
Trigger: GAGCTCCTGGGACCCTAAGCCCATCACCGTGCCCCAGTTTAAACAGATGCTTTCGGACTTGTTCACGGTTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp ACTGGGAGTGGTTTATCACTTCCAGCAGTGTGGCGATaGCTATGTTCTGGAGGGAGCAGTCGCTCACACAGC +
Preference number: 6 (lower is better)
Translates to: TGSGLSLPAVWR*LCSGGSSRSHS
Trigger: GCTGTGTGAGCGACTGCTCCCTCCAGAACATAGCCATCGCCACACTGCTGGAAGTGATAAACCACTCCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 72 bp TCCAACCTTGTTCCCTTGTCAGGGTCCAGGAGGGCATaGCAGATGATATCCTCACAGATGTTGGCAGTCGGG +
Preference number: 6 (lower is better)
Translates to: SNLVPLSGSRRA*QMISSQMLAVG
Trigger: CCCGACTGCCAACATCTGTGAGGATATCATCTGCCATGCCCTCCTGGACCCTGACAAGGGAACAAGGTTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp GACGCCCAGGAGGGAAGGGAAGGCCTCCTGCAGGTCTaGTATGGACAGTCTTTGGATGAAAGCATAGCAGAA +
Preference number: 6 (lower is better)
Translates to: DAQEGREGLLQV*YGQSLDESIAE
Trigger: TTCTGCTATGCTTTCATCCAAAGACTGTCCATACCAGACCTGCAGGAGGCCTTCCCTTCCCTCCTGGGCGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS CCA 72 bp CATGAACAGTCTCCATACATGCTCCTGCTGCTACCATaGGCTGAGTGGCCCTCATCCCCTTTGATCTGCGCT +
Preference number: 6 (lower is better)
Translates to: HEQSPYMLLLLP*AEWPSSPLICA
Trigger: AGCGCAGATCAAAGGGGATGAGGGCCACTCAGCCCATGGTAGCAGCAGGAGCATGTATGGAGACTGTTCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228261.2
CDS CAA 72 bp ATGATGAGCCGCCGTGGTAGGAGGGAATACTTCAGGTaGCTCTGGAGAGCCTTGTTGAGCTTGCCGAGCGAA +
Preference number: 6 (lower is better)
Translates to: MMSRRGRREYFR*LWRALLSLPSE
Trigger: TTCGCTCGGCAAGCTCAACAAGGCTCTCCAGAGCAACCTGAAGTATTCCCTCCTACCACGGCGGCTCATCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000228846.2
CDS CAA 72 bp TCTATGCCCGTCCTGGACACAGCCTCAATGAACTCCTaGGGATTGGTCTTAAGCACGGCCTCCAGTACGGAG +
Preference number: 6 (lower is better)
Translates to: SMPVLDTASMNS*GLVLSTASSTE
Trigger: CTCCGTACTGGAGGCCGTGCTTAAGACCAATCCCAAGGAGTTCATTGAGGCTGTGTCCAGGACGGGCATAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp GAGAGAAGCCAGAACCTCTGCCAAGAGAGAGAGCGCTaGCACACTGTAAACGGAGGGGGCAGAAGCAGATAC +
Preference number: 6 (lower is better)
Translates to: ERSQNLCQERER*HTVNGGGRSRY
Trigger: GTATCTGCTTCTGCCCCCTCCGTTTACAGTGTGCAAGCGCTCTCTCTCTTGGCAGAGGTTCTGGCTTCTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CAA 72 bp CGTCTGTCCGACTCTGAGGTTGTCTGTCAGGCGCTCTaGTATCAGGGGAAGGTAGAGGTGGTACTGGTCAAG +
Preference number: 6 (lower is better)
Translates to: RLSDSEVVCQAL*YQGKVEVVLVK
Trigger: CTTGACCAGTACCACCTCTACCTTCCCCTGATACAAGAGCGCCTGACAGACAACCTCAGAGTCGGACAGACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CAA 90 bp AACTATGGACGTCTGTCCGACTCTGAGGTTGTCTGTCAGGCGCTCTaGTATCAGGGGAAGGTAGAGGTGGTACTGGTCAAGCTCGCCACT +
Preference number: 6 (lower is better)
Translates to: NYGRLSDSEVVCQAL*YQGKVEVVLVKLAT
Trigger: AGTGGCGAGCTTGACCAGTACCACCTCTACCTTCCCCTGATACAAGAGCGCCTGACAGACAACCTCAGAGTCGGACAGACGTCCATAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 72 bp GGAGGGAGCAGTCGCTCACACAGCAGCAAATTGTCATaGGGGATTTCAGCCACGGAGGAAAACTGCAATCGC +
Preference number: 6 (lower is better)
Translates to: GGSSRSHSSKLS*GISATEENCNR
Trigger: GCGATTGCAGTTTTCCTCCGTGGCTGAAATCCCTCATGACAATTTGCTGCTGTGTGAGCGACTGCTCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 72 bp TTCCTGGTCTGCTGTGACATGAACAGTCTCCATACATaGTCCTGCTGCTACCATGGGCTGAGTGGCCCTCAT +
Preference number: 6 (lower is better)
Translates to: FLVCCDMNSLHT*SCCYHGLSGPH
Trigger: ATGAGGGCCACTCAGCCCATGGTAGCAGCAGGAGCATGTATGGAGACTGTTCATGTCACAGCAGACCAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228261.2
CDS CCA 72 bp CTTCTGTTGAGAGACATGTCCCTTCTCAGGAGTGTCTaGGTGGCAGCTGAGAGGATGTGCACAACATCCCGT +
Preference number: 6 (lower is better)
Translates to: LLLRDMSLLRSV*VAAERMCTTSR
Trigger: ACGGGATGTTGTGCACATCCTCTCAGCTGCCACCCAGACACTCCTGAGAAGGGACATGTCTCTCAACAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp TGTAAATCCTCGGCTGAGTTCTCCTGCTTGAGACACTaGATGGACGTCCTCTGGGTTTTGGGCTGGAGCAAC +
Preference number: 6 (lower is better)
Translates to: CKSSAEFSCLRH*MDVLWVLGWSN
Trigger: GTTGCTCCAGCCCAAAACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAGCCGAGGATTTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp AACCAACGGTGTAAATCCTCGGCTGAGTTCTCCTGCTaGAGACACTGGATGGACGTCCTCTGGGTTTTGGGC +
Preference number: 6 (lower is better)
Translates to: NQRCKSSAEFSC*RHWMDVLWVLG
Trigger: GCCCAAAACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAGCCGAGGATTTACACCGTTGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp CTGTGGATGAACTCCGTGTTCTTCCCTTCCGCCGACTaGGCCATGGAGACCAGCTGTGCTGTAATCCTAATG +
Preference number: 6 (lower is better)
Translates to: LWMNSVFFPSAD*AMETSCAVILM
Trigger: CATTAGGATTACAGCACAGCTGGTCTCCATGGCCAAGTCGGCGGAAGGGAAGAACACGGAGTTCATCCACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp GGCTTTCACCTCCAGATTTCTGCTGAGCCAGCTTGTTaGTTCCAAGGAGGAGCCAGCGATGGTACCTACAGC +
Preference number: 6 (lower is better)
Translates to: GFHLQISAEPAC*FQGGASDGTYS
Trigger: GCTGTAGGTACCATCGCTGGCTCCTCCTTGGAACAAACAAGCTGGCTCAGCAGAAATCTGGAGGTGAAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS CAA 90 bp CTGAGGTTGGGCTTTCACCTCCAGATTTCTGCTGAGCCAGCTTGTTaGTTCCAAGGAGGAGCCAGCGATGGTACCTACAGCTTCCAGGAT +
Preference number: 6 (lower is better)
Translates to: LRLGFHLQISAEPAC*FQGGASDGTYSFQD
Trigger: ATCCTGGAAGCTGTAGGTACCATCGCTGGCTCCTCCTTGGAACAAACAAGCTGGCTCAGCAGAAATCTGGAGGTGAAAGCCCAACCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS TCA 72 bp ATGACGGACTTCCAGTGGACGCAAGACGTATCCATCTaGAAGAAAGCGGGGTCCAAGAACAGCTCCAGCACT +
Preference number: 6 (lower is better)
Translates to: MTDFQWTQDVSI*KKAGSKNSSST
Trigger: AGTGCTGGAGCTGTTCTTGGACCCCGCTTTCTTTCAGATGGATACGTCTTGCGTCCACTGGAAGTCCGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS TCA 72 bp GGGAGACTTCTGGTCTCTTCCTGGTCTGCTGTGACATaGACAGTCTCCATACATGCTCCTGCTGCTACCATG +
Preference number: 6 (lower is better)
Translates to: GRLLVSSWSAVT*TVSIHAPAATM
Trigger: CATGGTAGCAGCAGGAGCATGTATGGAGACTGTTCATGTCACAGCAGACCAGGAAGAGACCAGAAGTCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228261.2
CDS GCA 72 bp AGCCTTGTTGAGCTTGCCGAGCGAAGAGATGAGATCTaGCCATTCGCTGGAGGACTCAAAGTTTCTCAACGC +
Preference number: 6 (lower is better)
Translates to: SLVELAERRDEI*PFAGGLKVSQR
Trigger: GCGTTGAGAAACTTTGAGTCCTCCAGCGAATGGGCAGATCTCATCTCTTCGCTCGGCAAGCTCAACAAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000228846.2
CDS GCA 72 bp TCCAATAGCCGTGGTTTGTGTCACTGGTCTGAAGCATaGCTCGAAACGCCGTGCCATGTAATCCCACAGGAA +
Preference number: 6 (lower is better)
Translates to: SNSRGLCHWSEA*LETPCHVIPQE
Trigger: TTCCTGTGGGATTACATGGCACGGCGTTTCGAGGCATGCTTCAGACCAGTGACACAAACCACGGCTATTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 72 bp ACGGCAAAAGCCTGGCGCTTCAGCAGCATGGCCTTCTaGTCAAAGCTGGAGAAGAGTTTTAAGGAACTGCTC +
Preference number: 6 (lower is better)
Translates to: TAKAWRFSSMAF*SKLEKSFKELL
Trigger: GAGCAGTTCCTTAAAACTCTTCTCCAGCTTTGAGCAGAAGGCCATGCTGCTGAAGCGCCAGGCTTTTGCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CAA 72 bp AGGAGGGAATACTTCAGGTTGCTCTGGAGAGCCTTGTaGAGCTTGCCGAGCGAAGAGATGAGATCTGCCCAT +
Preference number: 6 (lower is better)
Translates to: RREYFRLLWRAL*SLPSEEMRSAH
Trigger: ATGGGCAGATCTCATCTCTTCGCTCGGCAAGCTCAACAAGGCTCTCCAGAGCAACCTGAAGTATTCCCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000228846.2
CDS CAA 72 bp TCCCCAGACACAGTCAGCGACGCTGCAAAGATGTTCTaGCTGGCAAAGTTTGCAATGAGCTCCTGGATGCAG +
Preference number: 6 (lower is better)
Translates to: SPDTVSDAAKMF*LAKFAMSSWMQ
Trigger: CTGCATCCAGGAGCTCATTGCAAACTTTGCCAGCAAGAACATCTTTGCAGCGTCGCTGACTGTGTCTGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 72 bp TGTCTGAACCTAGTAACCAGGCGTAGAGTCTTCTGTTaGGAGACATGTCCCTTCTCAGGAGTGTCTGGGTGG +
Preference number: 6 (lower is better)
Translates to: CLNLVTRRRVFC*ETCPFSGVSGW
Trigger: CCACCCAGACACTCCTGAGAAGGGACATGTCTCTCAACAGAAGACTCTACGCCTGGTTACTAGGTTCAGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 72 bp GAGCCACCCTCTGATAGAAGTCTGTTTTCTCGGCAATaGCTTTCAGTATCCCAGGAGCAATGGGAGGGACTG +
Preference number: 6 (lower is better)
Translates to: EPPSDRSLFSRQ*LSVSQEQWEGL
Trigger: CAGTCCCTCCCATTGCTCCTGGGATACTGAAAGTCATTGCCGAGAAAACAGACTTCTATCAGAGGGTGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp GGGCTTGTTTTCCTCCCCAGACACAGTCAGCGACGCTaGAAAGATGTTCTTGCTGGCAAAGTTTGCAATGAG +
Preference number: 6 (lower is better)
Translates to: GLVFLPRHSQRR*KDVLAGKVCNE
Trigger: CTCATTGCAAACTTTGCCAGCAAGAACATCTTTGCAGCGTCGCTGACTGTGTCTGGGGAGGAAAACAAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 72 bp GGGAGATTAGTGGTACAGCTTTCTCTTTCTCGTCGCTaGGGTAAACCATGTCCAGGAGAGAAGCCAGAACCT +
Preference number: 6 (lower is better)
Translates to: GRLVVQLSLSRR*GKPCPGEKPEP
Trigger: AGGTTCTGGCTTCTCTCCTGGACATGGTTTACCGCAGCGACGAGAAAGAGAAAGCTGTACCACTAATCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS GCA 72 bp AATTCAGACACCATGATGGGCCACAGCGAGGTCAGGTaGTGGGGAGAGATTCTTAGCAGCAGAACTCTGAAA +
Preference number: 6 (lower is better)
Translates to: NSDTMMGHSEVR*WGEILSSRTLK
Trigger: TTTCAGAGTTCTGCTGCTAAGAATCTCTCCCCAGCACCTGACCTCGCTGTGGCCCATCATGGTGTCTGAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp TTTATCACTTCCAGCAGTGTGGCGATGGCTATGTTCTaGAGGGAGCAGTCGCTCACACAGCAGCAAATTGTC +
Preference number: 6 (lower is better)
Translates to: FITSSSVAMAMF*REQSLTQQQIV
Trigger: GACAATTTGCTGCTGTGTGAGCGACTGCTCCCTCCAGAACATAGCCATCGCCACACTGCTGGAAGTGATAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 72 bp ATCTTGTCTTCGATGACAAGAGCGAGGGACTGGGAGTaGTTTATCACTTCCAGCAGTGTGGCGATGGCTATG +
Preference number: 6 (lower is better)
Translates to: ILSSMTRARDWE*FITSSSVAMAM
Trigger: CATAGCCATCGCCACACTGCTGGAAGTGATAAACCACTCCCAGTCCCTCGCTCTTGTCATCGAAGACAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CCA 72 bp AGGACGACAAACAAGGACCTGTCAAAGGAGCGATTGTaGGACGTCACACGACTACCTTGGATTTCTCGTGTC +
Preference number: 6 (lower is better)
Translates to: RTTNKDLSKERL*DVTRLPWISRV
Trigger: GACACGAGAAATCCAAGGTAGTCGTGTGACGTCCCACAATCGCTCCTTTGACAGGTCCTTGTTTGTCGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp CCTGGCGCTTCAGCAGCATGGCCTTCTGCTCAAAGCTaGAGAAGAGTTTTAAGGAACTGCTCTGCATGTTCA +
Preference number: 6 (lower is better)
Translates to: PGASAAWPSAQS*RRVLRNCSACS
Trigger: TGAACATGCAGAGCAGTTCCTTAAAACTCTTCTCCAGCTTTGAGCAGAAGGCCATGCTGCTGAAGCGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CAA 72 bp TCCAGGACGACAAACAAGGACCTGTCAAAGGAGCGATaGTGGGACGTCACACGACTACCTTGGATTTCTCGT +
Preference number: 6 (lower is better)
Translates to: SRTTNKDLSKER*WDVTRLPWISR
Trigger: ACGAGAAATCCAAGGTAGTCGTGTGACGTCCCACAATCGCTCCTTTGACAGGTCCTTGTTTGTCGTCCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 90 bp GAAGGTCCACATAGTAGGGCAGGTCTTCCTCACTTAGATCACTTCTaGGTGGGCATTTCTCTGGTTCCTTCTCTACTTCAGCCCAGATGG +
Preference number: 6 (lower is better)
Translates to: EGPHSRAGLPHLDHF*VGISLVPSLLQPRW
Trigger: CCATCTGGGCTGAAGTAGAGAAGGAACCAGAGAAATGCCCACCAAGAAGTGATCTAAGTGAGGAAGACCTGCCCTACTATGTGGACCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS TCA 72 bp CCACTTGAGGTCCTATTTCCGGCTTGTCCAGCAGACTaGCAAGGATTCGGAAAGGCTTCAGATATGCATGGT +
Preference number: 6 (lower is better)
Translates to: PLEVLFPACPAD*QGFGKASDMHG
Trigger: ACCATGCATATCTGAAGCCTTTCCGAATCCTTGTCAGTCTGCTGGACAAGCCGGAAATAGGACCTCAAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 72 bp AGGCCTCCTGCAGGTCTGGTATGGACAGTCTTTGGATaGAAGCATAGCAGAACTGCAACACAGGAATGTCCA +
Preference number: 6 (lower is better)
Translates to: RPPAGLVWTVFG*KHSRTATQECP
Trigger: TGGACATTCCTGTGTTGCAGTTCTGCTATGCTTTCATCCAAAGACTGTCCATACCAGACCTGCAGGAGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS GCA 72 bp TGGCGCTCCTCTAAGTCAGCGTCTAAGAACTTCTGGTaGAGTATCTCAGCCAGAGCCTCAACTAAAAGATCC +
Preference number: 6 (lower is better)
Translates to: WRSSKSASKNFW*SISARASTKRS
Trigger: GGATCTTTTAGTTGAGGCTCTGGCTGAGATACTGCACCAGAAGTTCTTAGACGCTGACTTAGAGGAGCGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 72 bp TTTGCAATGAGCTCCTGGATGCAGAGAAATGTCGCCTaGATGGTCCCGTCTTTCTTCCAGATGTCGTCTCTT +
Preference number: 6 (lower is better)
Translates to: FAMSSWMQRNVA*MVPSFFQMSSL
Trigger: AAGAGACGACATCTGGAAGAAAGACGGGACCATGCAGGCGACATTTCTCTGCATCCAGGAGCTCATTGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS GCA 72 bp TTAAACCAACGGTGTAAATCCTCGGCTGAGTTCTCCTaGTTGAGACACTGGATGGACGTCCTCTGGGTTTTG +
Preference number: 6 (lower is better)
Translates to: LNQRCKSSAEFS*LRHWMDVLWVL
Trigger: CAAAACCCAGAGGACGTCCATCCAGTGTCTCAAGCAGGAGAACTCAGCCGAGGATTTACACCGTTGGTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp CTGACAAGGATTCGGAAAGGCTTCAGATATGCATGGTaGCGCTCCTCTAAGTCAGCGTCTAAGAACTTCTGG +
Preference number: 6 (lower is better)
Translates to: LTRIRKGFRYAW*RSSKSASKNFW
Trigger: CCAGAAGTTCTTAGACGCTGACTTAGAGGAGCGCCACCATGCATATCTGAAGCCTTTCCGAATCCTTGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp AAGATGTTCTTGCTGGCAAAGTTTGCAATGAGCTCCTaGATGCAGAGAAATGTCGCCTGCATGGTCCCGTCT +
Preference number: 6 (lower is better)
Translates to: KMFLLAKFAMSS*MQRNVACMVPS
Trigger: AGACGGGACCATGCAGGCGACATTTCTCTGCATCCAGGAGCTCATTGCAAACTTTGCCAGCAAGAACATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CCA 72 bp TCAAAGGAGCGATTGTGGGACGTCACACGACTACCTTaGATTTCTCGTGTCAGGTGCCAGATCACAGAAAAC +
Preference number: 6 (lower is better)
Translates to: SKERLWDVTRLP*ISRVRCQITEN
Trigger: GTTTTCTGTGATCTGGCACCTGACACGAGAAATCCAAGGTAGTCGTGTGACGTCCCACAATCGCTCCTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp GTCAAAGGAGCGATTGTGGGACGTCACACGACTACCTaGGATTTCTCGTGTCAGGTGCCAGATCACAGAAAA +
Preference number: 6 (lower is better)
Translates to: VKGAIVGRHTTT*DFSCQVPDHRK
Trigger: TTTTCTGTGATCTGGCACCTGACACGAGAAATCCAAGGTAGTCGTGTGACGTCCCACAATCGCTCCTTTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 90 bp TTGTTTTCCTCCCCAGACACAGTCAGCGACGCTGCAAAGATGTTCTaGCTGGCAAAGTTTGCAATGAGCTCCTGGATGCAGAGAAATGTC +
Preference number: 6 (lower is better)
Translates to: LFSSPDTVSDAAKMF*LAKFAMSSWMQRNV
Trigger: GACATTTCTCTGCATCCAGGAGCTCATTGCAAACTTTGCCAGCAAGAACATCTTTGCAGCGTCGCTGACTGTGTCTGGGGAGGAAAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CAA 90 bp GCCATGGTGTTCACTATTCGAGGTAGCTCTTCCAAAATGGCGTTCTaGGCATTTCTCAGGTTGATGGGATCGCTTACGGCAGCAGTCTTT +
Preference number: 6 (lower is better)
Translates to: AMVFTIRGSSSKMAF*AFLRLMGSLTAAVF
Trigger: AAAGACTGCTGCCGTAAGCGATCCCATCAACCTGAGAAATGCCAAGAACGCCATTTTGGAAGAGCTACCTCGAATAGTGAACACCATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS TCA 72 bp TCTGATGGTCTTGGTGGTTTTAAAGTAAACAGAGGATaGCCCTTTGGTGGCTCCCAGGAGATCCACTGGTCT +
Preference number: 6 (lower is better)
Translates to: SDGLGGFKVNRG*PFGGSQEIHWS
Trigger: AGACCAGTGGATCTCCTGGGAGCCACCAAAGGGTCATCCTCTGTTTACTTTAAAACCACCAAGACCATCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS TCA 72 bp GGTTGGGTGTTCTTGTCACAAAGTCATTCAACATGCTaGGAAGCAGAAAGTATCCAGGGGGAGCCAGGTTCA +
Preference number: 6 (lower is better)
Translates to: GWVFLSQSHSTC*EAESIQGEPGS
Trigger: TGAACCTGGCTCCCCCTGGATACTTTCTGCTTCTCAGCATGTTGAATGACTTTGTGACAAGAACACCCAACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS GCA 72 bp GACGTCACACGACTACCTTGGATTTCTCGTGTCAGGTaGCAGATCACAGAAAACCTAAACAGAGCTTCCAAC +
Preference number: 6 (lower is better)
Translates to: DVTRLPWISRVR*QITENLNRASN
Trigger: GTTGGAAGCTCTGTTTAGGTTTTCTGTGATCTGGCACCTGACACGAGAAATCCAAGGTAGTCGTGTGACGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CCA 72 bp AGACTGACAAGGATTCGGAAAGGCTTCAGATATGCATaGTGGCGCTCCTCTAAGTCAGCGTCTAAGAACTTC +
Preference number: 6 (lower is better)
Translates to: RLTRIRKGFRYA*WRSSKSASKNF
Trigger: GAAGTTCTTAGACGCTGACTTAGAGGAGCGCCACCATGCATATCTGAAGCCTTTCCGAATCCTTGTCAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CAA 90 bp ATTCGAGGTAGCTCTTCCAAAATGGCGTTCTTGGCATTTCTCAGGTaGATGGGATCGCTTACGGCAGCAGTCTTTTTATGTTGGGTAGGC +
Preference number: 6 (lower is better)
Translates to: IRGSSSKMAFLAFLR*MGSLTAAVFLCWVG
Trigger: GCCTACCCAACATAAAAAGACTGCTGCCGTAAGCGATCCCATCAACCTGAGAAATGCCAAGAACGCCATTTTGGAAGAGCTACCTCGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CAA 90 bp AAGAAAAACAGGATGATCTCCAGGTTATTTCTTTGCACAAGAACATaGGCGTCTAGCAGTGAAGCACACAGGGATCTCACCGTGAGCTGG +
Preference number: 6 (lower is better)
Translates to: KKNRMISRLFLCTRT*ASSSEAHRDLTVSW
Trigger: CCAGCTCACGGTGAGATCCCTGTGTGCTTCACTGCTAGACGCCAATGTTCTTGTGCAAAGAAATAACCTGGAGATCATCCTGTTTTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS TCA 72 bp CAGCGATGGTACCTACAGCTTCCAGGATTCTCTGAGTaGTTTCCTGCAGGTCTTTTTGGTCCTTCTTGCTTT +
Preference number: 6 (lower is better)
Translates to: QRWYLQLPGFSE*FPAGLFGPSCF
Trigger: AAAGCAAGAAGGACCAAAAAGACCTGCAGGAAATCACTCAGAGAATCCTGGAAGCTGTAGGTACCATCGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
ENSMUST00000228261.2
CDS CAA 72 bp AGGATGATCTCCAGGTTATTTCTTTGCACAAGAACATaGGCGTCTAGCAGTGAAGCACACAGGGATCTCACC +
Preference number: 6 (lower is better)
Translates to: RMISRLFLCTRT*ASSSEAHRDLT
Trigger: GGTGAGATCCCTGTGTGCTTCACTGCTAGACGCCAATGTTCTTGTGCAAAGAAATAACCTGGAGATCATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CAA 72 bp CATAGTAGGGCAGGTCTTCCTCACTTAGATCACTTCTaGGTGGGCATTTCTCTGGTTCCTTCTCTACTTCAG +
Preference number: 6 (lower is better)
Translates to: HSRAGLPHLDHF*VGISLVPSLLQ
Trigger: CTGAAGTAGAGAAGGAACCAGAGAAATGCCCACCAAGAAGTGATCTAAGTGAGGAAGACCTGCCCTACTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS CAA 72 bp TTCACTATTCGAGGTAGCTCTTCCAAAATGGCGTTCTaGGCATTTCTCAGGTTGATGGGATCGCTTACGGCA +
Preference number: 6 (lower is better)
Translates to: FTIRGSSSKMAF*AFLRLMGSLTA
Trigger: TGCCGTAAGCGATCCCATCAACCTGAGAAATGCCAAGAACGCCATTTTGGAAGAGCTACCTCGAATAGTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS GCA 72 bp GGGAAGAAAAACAGGATGATCTCCAGGTTATTTCTTTaGACAAGAACATTGGCGTCTAGCAGTGAAGCACAC +
Preference number: 6 (lower is better)
Translates to: GKKNRMISRLFL*TRTLASSSEAH
Trigger: GTGTGCTTCACTGCTAGACGCCAATGTTCTTGTGCAAAGAAATAACCTGGAGATCATCCTGTTTTTCTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045004.11
ENSMUST00000227156.2
CDS CAA 90 bp TTGACAGATTCACTTTCATATTGCTTGACCAGATCGTCCAAATTTTaGCAAATCTGGATAACAAAGGGTGTCACTGTCCAGCCCAGAGAC +
Preference number: 6 (lower is better)
Translates to: LTDSLSYCLTRSSKF*QIWITKGVTVQPRD
Trigger: GTCTCTGGGCTGGACAGTGACACCCTTTGTTATCCAGATTTGCAAAAATTTGGACGATCTGGTCAAGCAATATGAAAGTGAATCTGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000226836.2
ENSMUST00000227156.2
CDS GCA 72 bp GTACTGATGGTGAACTTGACAGATTCACTTTCATATTaGTTGACCAGATCGTCCAAATTTTTGCAAATCTGG +
Preference number: 6 (lower is better)
Translates to: VLMVNLTDSLSY*LTRSSKFLQIW
Trigger: CCAGATTTGCAAAAATTTGGACGATCTGGTCAAGCAATATGAAAGTGAATCTGTCAAGTTCACCATCAGTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2
CDS CAA 72 bp TGTACTGATGGTGAACTTGACAGATTCACTTTCATATaGCTTGACCAGATCGTCCAAATTTTTGCAAATCTG +
Preference number: 6 (lower is better)
Translates to: CTDGELDRFTFI*LDQIVQIFANL
Trigger: CAGATTTGCAAAAATTTGGACGATCTGGTCAAGCAATATGAAAGTGAATCTGTCAAGTTCACCATCAGTACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045004.11
ENSMUST00000226215.2
ENSMUST00000227156.2