Pregenerated sensors for DOC2G (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024871Ensembl transcript IDs: ENSMUST00000025806.5, ENSMUST00000236482.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTATTTTGCTTTGTGTTTGGGGGTTACATGACTGGAAGGAGACAATaGATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAG | + |
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Preference number: 1 (lower is better) Translates to: LFCFVFGGYMTGRRQ*IADVIAQTSFQMQQ Trigger: CTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCTTCCAGTCATGTAACCCCCAAACACAAAGCAAAATAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| 3UTR CCA 90 bp | CAGAAGCAGGTGTTTATTTTGCTTTGTGTTTGGGGGTTACATGACTaGAAGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTT | + |
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Preference number: 1 (lower is better) Translates to: QKQVFILLCVWGLHD*KETMHSRCDSPDLF Trigger: AAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCTTCCAGTCATGTAACCCCCAAACACAAAGCAAAATAAACACCTGCTTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| 3UTR CCA 72 bp | ATAGCCCAGACCTCTTTCCAGATGCAGCAGACATCTTaGCTCCTGAGCTGGTTGCACAGCAGGGCCCTGTGC | + |
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Preference number: 3 (lower is better) Translates to: IAQTSFQMQQTS*LLSWLHSRALC Trigger: GCACAGGGCCCTGCTGTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTGGAAAGAGGTCTGGGCTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| 3UTR CCA 72 bp | GTGTTTATTTTGCTTTGTGTTTGGGGGTTACATGACTaGAAGGAGACAATGCATAGCAGATGTGATAGCCCA | + |
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Preference number: 3 (lower is better) Translates to: VFILLCVWGLHD*KETMHSRCDSP Trigger: TGGGCTATCACATCTGCTATGCATTGTCTCCTTCCAGTCATGTAACCCCCAAACACAAAGCAAAATAAACAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | GCCCAGACCTCTTTCCAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTGCACCTTCGGGCTCAGGGTTaGGCTGCAGCTGGGGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: AQTSFQMQQTSWLLSWLHLRAQG*AAAGVQ Trigger: CTGCACCCCAGCTGCAGCCCAACCCTGAGCCCGAAG...GTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTGGAAAGAGGTCTGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | CAGACCTCTTTCCAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTGCACAGCGTGCGTGTCCGAAGCTaGCTGGCCTTGCTGGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: QTSFQMQQTSWLLSWLHSVRVRS*LALLAP Trigger: AGGGGCCAGCAAGGCCAGCCAGCTTCGGACACGCAC...GCTGTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTGGAAAGAGGTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | TCTTTCCAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTGCACAGCAGGGCCGCTCCTGGCTCGGTTTaGCACCAGCTTCCTCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: SFQMQQTSWLLSWLHSRAAPGSV*HQLPQG Trigger: CCCCTGAGGAAGCTGGTGCCAAACCGAGCCAGGAGC...GGCCCTGCTGTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTGGAAAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR GCA 90 bp | CAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTGCACAGCAGGGCCCTGTGCTGGCTTGAGACCCTTTaGACGATGGGCTGTGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: QMQQTSWLLSWLHSRALCWLETL*TMGCAV Trigger: CACTGCACAGCCCATCGTGCAAAGGGTCTCAAGCCA...GCACAGGGCCCTGCTGTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR GCA 90 bp | CAGACCTCTTTCCAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTGCACAGCTGGTGCCTCGAACAGTaGGTGTCCGAAGCTGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: QTSFQMQQTSWLLSWLHSWCLEQ*VSEAGW Trigger: CCAGCCAGCTTCGGACACGCACTGTTCGAGGCACCA...GCTGTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTGGAAAGAGGTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | AGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAGGGCGGATGGGCCGAATaGGGCCAGGGCTCACATCGA | + |
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Preference number: 4 (lower is better) Translates to: RRQCIADVIAQTSFQMQQGGWAE*GQGSHR Trigger: TCGATGTGAGCCCTGGCCCCATTCGGCCCATCCGCC...CTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | AGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAGGGGTTGGGCTGCAGCTaGGGTGCAGAGGGGATGGCT | + |
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Preference number: 4 (lower is better) Translates to: RRQCIADVIAQTSFQMQQGLGCS*GAEGMA Trigger: AGCCATCCCCTCTGCACCCCAGCTGCAGCCCAACCC...CTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR TCA 90 bp | AGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAGACACGGCGGCTGGTGGCTTaGGACCCTTTGCACGATGGG | + |
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Preference number: 4 (lower is better) Translates to: RQCIADVIAQTSFQMQQTRRLVA*DPLHDG Trigger: CCCATCGTGCAAAGGGTCTCAAGCCACCAGCCGCCG...TGTCTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR GCA 90 bp | AGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAGGTTCCCCACTGGCTCTaGCACTCAGCTGCACCCCAC | + |
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Preference number: 4 (lower is better) Translates to: RRQCIADVIAQTSFQMQQVPHWL*HSAAPH Trigger: GTGGGGTGCAGCTGAGTGGCAGAGCCAGTGGGGAAC...CTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | CAGACCTCTTTCCAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTGCACAGCCAGGGCTCACATCGATaGCCATGTGTTCCTGCATGC | + |
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Preference number: 4 (lower is better) Translates to: QTSFQMQQTSWLLSWLHSQGSHR*PCVPAC Trigger: GCATGCAGGAACACATGGCCATCGATGTGAGCCCTG...GCTGTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTGGAAAGAGGTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR GCA 90 bp | GAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAGACCGATGGGCTGTGCAGTaGAGGGCGCTGTTGTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: ETMHSRCDSPDLFPDAADRWAVQ*RALLSS Trigger: TGAGGACAACAGCGCCCTGCACTGCACAGCCCATCG...GTCTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR GCA 90 bp | ACCTCTTTCCAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTGCACAGCAGGCCTCATATAGAGACATaGCACGAGCTGTGTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: TSFQMQQTSWLLSWLHSRPHIET*HELCPG Trigger: GCCTGGACACAGCTCGTGGCATGTCTCTATATGAGG...CCTGCTGTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTGGAAAGAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR GCA 90 bp | AGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAGCTCCCCAAACACCTCTaGCTCCATCTCCTCCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: RRQCIADVIAQTSFQMQQLPKHL*LHLLLL Trigger: GAGGAGGAGGAGATGGAGGCAGAGGTGTTTGGGGAG...CTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | CAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAGACATCTGCTGGCTGGCCTTGCTaGCCCCTGGTAGTAAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: QCIADVIAQTSFQMQQTSAGWPC*PLVVSW Trigger: CCAACTTACTACCAGGGGCCAGCAAGGCCAGCCAGC...AGATGTCTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | CCAGACCTCTTTCCAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTGCACAGTTTCTTCCCAGAACTTaGATGCAGGAACAGGCGGAC | + |
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Preference number: 4 (lower is better) Translates to: PDLFPDAADILAPELVAQFLPRT*MQEQAD Trigger: GTCCGCCTGTTCCTGCATCCAAGTTCTGGGAAGAAA...CTGTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTGGAAAGAGGTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR TCA 90 bp | GGAAGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGGCTGCACCCCACCAATaGAATCATCAGCTGTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: GRRQCIADVIAQTSFQMQAAPHQ*NHQLCP Trigger: TGGGCACAGCTGATGATTTCATTGGTGGGGTGCAGC...CTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR GCA 90 bp | CAGAAGCAGGTGTTTATTTTGCTTTGTGTTTGGGGGTTACATGACTGGAAGGAGACGCTGTCCAGCAGGTaGCACAGTTCCAGCCGGTGG | + |
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Preference number: 4 (lower is better) Translates to: QKQVFILLCVWGLHDWKETLSSR*HSSSRW Trigger: CCACCGGCTGGAACTGTGGCACCTGCTGGACAGCGT...CTCCTTCCAGTCATGTAACCCCCAAACACAAAGCAAAATAAACACCTGCTTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | CAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAGACATCTCTGTGTCCAGGCTCTTaGGCCTCTTGGTCAGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: QCIADVIAQTSFQMQQTSLCPGS*ASWSAS Trigger: GGAAGCTGACCAAGAGGCCCAAGAGCCTGGACACAG...AGATGTCTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | TTTTGCTTTGTGTTTGGGGGTTACATGACTGGAAGGAGACAATGCATAGCAGATGCAGGCGTTCCCCACTaGCTCTGCCACTCAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: FCFVFGGYMTGRRQCIADAGVPH*LCHSAA Trigger: TGCAGCTGAGTGGCAGAGCCAGTGGGGAACGCCTGC...ATCTGCTATGCATTGTCTCCTTCCAGTCATGTAACCCCCAAACACAAAGCAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR GCA 90 bp | CAGAAGCAGGTGTTTATTTTGCTTTGTGTTTGGGGGTTACATGACTGGAAGGAGGAAGCTGGCTGGCCTTaGTGGCCCCTGGTAGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: QKQVFILLCVWGLHDWKEEAGWP*WPLVVS Trigger: ACTTACTACCAGGGGCCAGCAAGGCCAGCCAGCTTC...CTCCTTCCAGTCATGTAACCCCCAAACACAAAGCAAAATAAACACCTGCTTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | AGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAGACAAGATGTCAAAGCTCCTaGCTCGGTTTGGCACCAGCT | + |
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Preference number: 4 (lower is better) Translates to: RQCIADVIAQTSFQMQQTRCQSS*LGLAPA Trigger: AGCTGGTGCCAAACCGAGCCAGGAGCTTTGACATCT...TGTCTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | ATGACTGGAAGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGAGCCATTGGCATCCATaGGAGCAAGGTGAACACAGC | + |
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Preference number: 4 (lower is better) Translates to: MTGRRQCIADVIAQTSFQSHWHP*EQGEHS Trigger: GCTGTGTTCACCTTGCTCCCATGGATGCCAATGGCT...CTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCTTCCAGTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CCA 90 bp | TTCCAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTGCACAGCAGGGCCCTGTCTTCCTCCGAACACTaGTCTTATATTTGGATTTCT | + |
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Preference number: 4 (lower is better) Translates to: FQMQQTSWLLSWLHSRALSSSEH*SYIWIS Trigger: AGAAATCCAAATATAAGACCAGTGTTCGGAGGAAGA...CAGGGCCCTGCTGTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR TCA 90 bp | AGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGCAGGTAGTAAGTTGGCTTTaGCATAGGTGTCCACAGAGC | + |
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Preference number: 4 (lower is better) Translates to: RRQCIADVIAQTSFQMQQVVSWL*HRCPQS Trigger: GCTCTGTGGACACCTATGTCAAAGCCAACTTACTAC...CTGCTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR TCA 90 bp | TACATGACTGGAAGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCATCAAAGAGAAGTGTaGATTCTAGGGTGCCTAGGG | + |
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Preference number: 4 (lower is better) Translates to: YMTGRRQCIADVIAQTSFHQREV*ILGCLG Trigger: CCCTAGGCACCCTAGAATTCACACTTCTCTTTGATG...GAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCTTCCAGTCATGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR TCA 90 bp | TGGAAGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAAAAAGAATTCCTCATTaGACTCAGGGTTCAGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: WKETMHSRCDSPDLFPDAKRIPH*TQGSGS Trigger: AGACCCTGAACCCTGAGTTCAATGAGGAATTCTTTT...TGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCTTCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR GCA 90 bp | CAGAAGCAGGTGTTTATTTTGCTTTGTGTTTGGGGGTTACATGACTGGAAGGAGCTCCTCCCGATGACCTaGATAAAAGAATTCCTCATT | + |
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Preference number: 4 (lower is better) Translates to: QKQVFILLCVWGLHDWKELLPMT*IKEFLI Trigger: AATGAGGAATTCTTTTATGCAGGTCATCGGGAGGAG...CTCCTTCCAGTCATGTAACCCCCAAACACAAAGCAAAATAAACACCTGCTTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS CCA 90 bp | GGCACGCTGTCCAGCAGGTGCCACAGTTCCAGCCGGTGGTCACAGTaGCCTAAGCACTCCCGCCAGTGGCGCAGGCGTTCCCCACTGGCT | + |
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Preference number: 5 (lower is better) Translates to: GTLSSRCHSSSRWSQ*PKHSRQWRRRSPLA Trigger: AGCCAGTGGGGAACGCCTGCGCCACTGGCGGGAGTGCTTAGGCCACTGTGACCACCGGCTGGAACTGTGGCACCTGCTGGACAGCGTGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS CCA 90 bp | CACAGTTCCAGCCGGTGGTCACAGTGGCCTAAGCACTCCCGCCAGTaGCGCAGGCGTTCCCCACTGGCTCTGCCACTCAGCTGCACCCCA | + |
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Preference number: 5 (lower is better) Translates to: HSSSRWSQWPKHSRQ*RRRSPLALPLSCTP Trigger: TGGGGTGCAGCTGAGTGGCAGAGCCAGTGGGGAACGCCTGCGCCACTGGCGGGAGTGCTTAGGCCACTGTGACCACCGGCTGGAACTGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS GCA 90 bp | GACATAGGTGTCCACAGAGCCGGCGGCTGGTGGCTTGAGACCCTTTaGACGATGGGCTGTGCAGTGCAGGGCGCTGTTGTCCTCATCAAA | + |
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Preference number: 5 (lower is better) Translates to: DIGVHRAGGWWLETL*TMGCAVQGAVVLIK Trigger: TTTGATGAGGACAACAGCGCCCTGCACTGCACAGCCCATCGTGCAAAGGGTCTCAAGCCACCAGCCGCCGGCTCTGTGGACACCTATGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025806.5 ENSMUST00000236482.2 |
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| CDS CCA 90 bp | GTGTCCACAGAGCCGGCGGCTGGTGGCTTGAGACCCTTTGCACGATaGGCTGTGCAGTGCAGGGCGCTGTTGTCCTCATCAAAGAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: VSTEPAAGGLRPFAR*AVQCRALLSSSKRS Trigger: ACTTCTCTTTGATGAGGACAACAGCGCCCTGCACTGCACAGCCCATCGTGCAAAGGGTCTCAAGCCACCAGCCGCCGGCTCTGTGGACAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025806.5 ENSMUST00000236482.2 |
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| CDS-3UTR CAA 90 bp | CAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTGCACAGCAGGGCCCTGTGCAGGCTCTTGGGCCTCTaGGTCAGCTTCCGCTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: QMQQTSWLLSWLHSRALCRLLGL*VSFRFS Trigger: AGAGAAGCGGAAGCTGACCAAGAGGCCCAAGAGCCT...GCACAGGGCCCTGCTGTGCAACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CAA 90 bp | GATAGCCCAGACCTCTTTCCAGATGCAGCAGACATCTTGGCTCCTGAGCTGGTTCGAAGCTGGCTGGCCTaGCTGGCCCCTGGTAGTAAG | + |
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Preference number: 5 (lower is better) Translates to: DSPDLFPDAADILAPELVRSWLA*LAPGSK Trigger: CTTACTACCAGGGGCCAGCAAGGCCAGCCAGCTTCG...AACCAGCTCAGGAGCCAAGATGTCTGCTGCATCTGGAAAGAGGTCTGGGCTATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS TCA 90 bp | GGGCTGTGCAGTGCAGGGCGCTGTTGTCCTCATCAAAGAGAAGTGTaGATTCTAGGGTGCCTAGGGCAGTGCTGTCATCCGAGTCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: GLCSAGRCCPHQREV*ILGCLGQCCHPSLL Trigger: AAGGAGACTCGGATGACAGCACTGCCCTAGGCACCCTAGAATTCACACTTCTCTTTGATGAGGACAACAGCGCCCTGCACTGCACAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025806.5 ENSMUST00000236482.2 |
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| CDS-3UTR CAA 90 bp | GGAAGGAGACAATGCATAGCAGATGTGATAGCCCAGACCTCTTTCCAGATGCAGGCTGTGTCCAGGCTCTaGGGCCTCTTGGTCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: GRRQCIADVIAQTSFQMQAVSRL*GLLVSF Trigger: GAAGCTGACCAAGAGGCCCAAGAGCCTGGACACAGC...CTGCATCTGGAAAGAGGTCTGGGCTATCACATCTGCTATGCATTGTCTCCTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CAA 90 bp | AGGTGTTTATTTTGCTTTGTGTTTGGGGGTTACATGACTGGAAGGAGACAATGCTGGCTGGGGCCAGCATaGCCTGCCGATCTGGGGCAC | + |
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Preference number: 5 (lower is better) Translates to: RCLFCFVFGGYMTGRRQCWLGPA*PADLGH Trigger: GTGCCCCAGATCGGCAGGCAATGCTGGCCCCAGCCA...GCATTGTCTCCTTCCAGTCATGTAACCCCCAAACACAAAGCAAAATAAACACCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CAA 90 bp | AGGTGTTTATTTTGCTTTGTGTTTGGGGGTTACATGACTGGAAGGAGACAATGCCAGTGCAGGGCGCTGTaGTCCTCATCAAAGAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: RCLFCFVFGGYMTGRRQCQCRAL*SSSKRS Trigger: ACTTCTCTTTGATGAGGACAACAGCGCCCTGCACTG...GCATTGTCTCCTTCCAGTCATGTAACCCCCAAACACAAAGCAAAATAAACACCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS-3UTR CAA 90 bp | TTTTGCTTTGTGTTTGGGGGTTACATGACTGGAAGGAGACAATGCATAGCAGATATTTCTTCCCAGAACTaGGATGCAGGAACAGGCGGA | + |
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Preference number: 5 (lower is better) Translates to: FCFVFGGYMTGRRQCIADISSQN*DAGTGG Trigger: TCCGCCTGTTCCTGCATCCAAGTTCTGGGAAGAAAT...ATCTGCTATGCATTGTCTCCTTCCAGTCATGTAACCCCCAAACACAAAGCAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS CCA 72 bp | AGCCGGTGGTCACAGTGGCCTAAGCACTCCCGCCAGTaGCGCAGGCGTTCCCCACTGGCTCTGCCACTCAGC | + |
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Preference number: 6 (lower is better) Translates to: SRWSQWPKHSRQ*RRRSPLALPLS Trigger: GCTGAGTGGCAGAGCCAGTGGGGAACGCCTGCGCCACTGGCGGGAGTGCTTAGGCCACTGTGACCACCGGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS CCA 72 bp | GGCACGCTGTCCAGCAGGTGCCACAGTTCCAGCCGGTaGTCACAGTGGCCTAAGCACTCCCGCCAGTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: GTLSSRCHSSSR*SQWPKHSRQWR Trigger: GCGCCACTGGCGGGAGTGCTTAGGCCACTGTGACCACCGGCTGGAACTGTGGCACCTGCTGGACAGCGTGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS CCA 72 bp | TCCAGCAGGTGCCACAGTTCCAGCCGGTGGTCACAGTaGCCTAAGCACTCCCGCCAGTGGCGCAGGCGTTCC | + |
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Preference number: 6 (lower is better) Translates to: SSRCHSSSRWSQ*PKHSRQWRRRS Trigger: GGAACGCCTGCGCCACTGGCGGGAGTGCTTAGGCCACTGTGACCACCGGCTGGAACTGTGGCACCTGCTGGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS GCA 72 bp | CACCGCGCTCGGAACTGTAGCACAGGGACAGTAGGATaGGGCCACGCTCCTCCCCAAACACCTCTGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: HRARNCSTGTVG*GHAPPQTPLPP Trigger: TGGAGGCAGAGGTGTTTGGGGAGGAGCGTGGCCGCATCCTACTGTCCCTGTGCTACAGTTCCGAGCGCGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS CCA 72 bp | GAGCCGGCGGCTGGTGGCTTGAGACCCTTTGCACGATaGGCTGTGCAGTGCAGGGCGCTGTTGTCCTCATCA | + |
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Preference number: 6 (lower is better) Translates to: EPAAGGLRPFAR*AVQCRALLSSS Trigger: TGATGAGGACAACAGCGCCCTGCACTGCACAGCCCATCGTGCAAAGGGTCTCAAGCCACCAGCCGCCGGCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025806.5 ENSMUST00000236482.2 |
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| CDS TCA 72 bp | GGCTGGCCTTGCTGGCCCCTGGTAGTAAGTTGGCTTTaGCATAGGTGTCCACAGAGCCGGCGGCTGGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: GWPCWPLVVSWL*HRCPQSRRLVA Trigger: AGCCACCAGCCGCCGGCTCTGTGGACACCTATGTCAAAGCCAACTTACTACCAGGGGCCAGCAAGGCCAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025806.5 ENSMUST00000236482.2 |
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| CDS GCA 72 bp | TGGCGCAGGCGTTCCCCACTGGCTCTGCCACTCAGCTaGACCCCACCAATGAAATCATCAGCTGTGCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: WRRRSPLALPLS*TPPMKSSAVPR Trigger: CCTGGGCACAGCTGATGATTTCATTGGTGGGGTGCAGCTGAGTGGCAGAGCCAGTGGGGAACGCCTGCGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS CCA 72 bp | GGCTTTGACATAGGTGTCCACAGAGCCGGCGGCTGGTaGCTTGAGACCCTTTGCACGATGGGCTGTGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: GFDIGVHRAGGW*LETLCTMGCAV Trigger: CACTGCACAGCCCATCGTGCAAAGGGTCTCAAGCCACCAGCCGCCGGCTCTGTGGACACCTATGTCAAAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025806.5 ENSMUST00000236482.2 |
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| CDS CCA 72 bp | GTTGGCTTTGACATAGGTGTCCACAGAGCCGGCGGCTaGTGGCTTGAGACCCTTTGCACGATGGGCTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: VGFDIGVHRAGG*WLETLCTMGCA Trigger: TGCACAGCCCATCGTGCAAAGGGTCTCAAGCCACCAGCCGCCGGCTCTGTGGACACCTATGTCAAAGCCAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025806.5 ENSMUST00000236482.2 |
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| CDS CAA 90 bp | GGCTTGAGACCCTTTGCACGATGGGCTGTGCAGTGCAGGGCGCTGTaGTCCTCATCAAAGAGAAGTGTGAATTCTAGGGTGCCTAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: GLRPFARWAVQCRAL*SSSKRSVNSRVPRA Trigger: TGCCCTAGGCACCCTAGAATTCACACTTCTCTTTGATGAGGACAACAGCGCCCTGCACTGCACAGCCCATCGTGCAAAGGGTCTCAAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025806.5 ENSMUST00000236482.2 |
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| CDS TCA 72 bp | AGTGCAGGGCGCTGTTGTCCTCATCAAAGAGAAGTGTaGATTCTAGGGTGCCTAGGGCAGTGCTGTCATCCG | + |
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Preference number: 6 (lower is better) Translates to: SAGRCCPHQREV*ILGCLGQCCHP Trigger: CGGATGACAGCACTGCCCTAGGCACCCTAGAATTCACACTTCTCTTTGATGAGGACAACAGCGCCCTGCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025806.5 ENSMUST00000236482.2 |
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| CDS CAA 72 bp | CCCTTTGCACGATGGGCTGTGCAGTGCAGGGCGCTGTaGTCCTCATCAAAGAGAAGTGTGAATTCTAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: PFARWAVQCRAL*SSSKRSVNSRV Trigger: CACCCTAGAATTCACACTTCTCTTTGATGAGGACAACAGCGCCCTGCACTGCACAGCCCATCGTGCAAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025806.5 ENSMUST00000236482.2 |
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| CDS CAA 90 bp | TCTTCCTCCGAACACTGGTCTTATATTTGGATTTCTTCCCAGAACTaGGATGCAGGAACAGGCGGACAAAGGGGTCTGAGTAGCCATTGG | + |
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Preference number: 6 (lower is better) Translates to: SSSEHWSYIWISSQN*DAGTGGQRGLSSHW Trigger: CCAATGGCTACTCAGACCCCTTTGTCCGCCTGTTCCTGCATCCAAGTTCTGGGAAGAAATCCAAATATAAGACCAGTGTTCGGAGGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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| CDS CAA 72 bp | GGGTTCAGGGTCTTCCTCCGAACACTGGTCTTATATTaGGATTTCTTCCCAGAACTTGGATGCAGGAACAGG | + |
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Preference number: 6 (lower is better) Translates to: GFRVFLRTLVLY*DFFPELGCRNR Trigger: CCTGTTCCTGCATCCAAGTTCTGGGAAGAAATCCAAATATAAGACCAGTGTTCGGAGGAAGACCCTGAACCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025806.5 |
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