Pregenerated sensors for DND1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044595Ensembl transcript IDs: ENSMUST00000061522.8
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATAAAAACAAAGATTCATAGTAAGCTCTGGTGCCAAGCTGGGAATTaGCTAAGGATAGCAGGTCAGACCCTGGGCTCAGTGGGGGAGGGC | + |
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Preference number: 1 (lower is better) Translates to: IKTKIHSKLWCQAGN*LRIAGQTLGSVGEG Trigger: GCCCTCCCCCACTGAGCCCAGGGTCTGACCTGCTATCCTTAGTCAATTCCCAGCTTGGCACCAGAGCTTACTATGAATCTTTGTTTTTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| 3UTR-3UTR CCA 90 bp | GAAAAACAAAAACCATGTAAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCGCTGTCACCAGGCCCTaGGCTGCCCAGGCCTGCTGG | + |
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Preference number: 2 (lower is better) Translates to: EKQKPCKPKPGTSGGRKGAVTRP*AAQACW Trigger: CCAGCAGGCCTGGGCAGCCCAGGGCCTGGTGACAGC...GCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTTACATGGTTTTTGTTTTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| 3UTR CAA 90 bp | CCATGTAAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTTaGGTTCAGCCAGTTCTCCAAATAAAAACAAAGATTCATAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: PCKPKPGTSGGRKGS*VQPVLQIKTKIHSK Trigger: CTTACTATGAATCTTTGTTTTTATTTGGAGAACTGGCTGAACCAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTTACATGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| 3UTR GCA 72 bp | AGGGCAAGGTTCCTCACAACTAAAGTAGCACTTAGGTaGAACAGGGCCCTGTCCCAGCAGGGAAAGCTGTCA | + |
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Preference number: 3 (lower is better) Translates to: RARFLTTKVALR*NRALSQQGKLS Trigger: TGACAGCTTTCCCTGCTGGGACAGGGCCCTGTTGCACCTAAGTGCTACTTTAGTTGTGAGGAACCTTGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| 3UTR TCA 72 bp | AAGATTCATAGTAAGCTCTGGTGCCAAGCTGGGAATTaGCTAAGGATAGCAGGTCAGACCCTGGGCTCAGTG | + |
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Preference number: 3 (lower is better) Translates to: KIHSKLWCQAGN*LRIAGQTLGSV Trigger: CACTGAGCCCAGGGTCTGACCTGCTATCCTTAGTCAATTCCCAGCTTGGCACCAGAGCTTACTATGAATCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR CCA 90 bp | AAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTTTGGTTCAGCCAGTTCGGCACACCAGGAGCTaGCAAGAAGGCCGCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KPKPGTSGGRKGSLVQPVRHTRS*QEGRSW Trigger: CCAGCTGCGGCCTTCTTGCCAGCTCCTGGTGTGCCG...AACTGGCTGAACCAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR TCA 90 bp | TGGGCTCAGTGGGGGAGGGCAAGGTTCCTCACAACTAAAGTAGCACTTAGGTGCTTGAGCAGCGCAATCTaGGAGGGCGCAGACCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: WAQWGRARFLTTKVALRCLSSAI*EGADPG Trigger: CCCTGGGTCTGCGCCCTCTCAGATTGCGCTGCTCAA...GCACCTAAGTGCTACTTTAGTTGTGAGGAACCTTGCCCTCCCCCACTGAGCCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR GCA 90 bp | TGGGCTCAGTGGGGGAGGGCAAGGTTCCTCACAACTAAAGTAGCACTTAGGTGCCTTTGCCCGTTGACCTaGACCAGGCGGATGCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: WAQWGRARFLTTKVALRCLCPLT*TRRMPV Trigger: GACTGGCATCCGCCTGGTGCAGGTCAACGGGCAAAG...GCACCTAAGTGCTACTTTAGTTGTGAGGAACCTTGCCCTCCCCCACTGAGCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR GCA 90 bp | TGGGCTCAGTGGGGGAGGGCAAGGTTCCTCACAACTAAAGTAGCACTTAGGTGCGCTCGCACTTCTCGGTaGTTCGGCACACCAGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: WAQWGRARFLTTKVALRCARTSR*FGTPGA Trigger: AGCTCCTGGTGTGCCGAAGCACCGAGAAGTGCGAGC...GCACCTAAGTGCTACTTTAGTTGTGAGGAACCTTGCCCTCCCCCACTGAGCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR GCA 90 bp | TGGGCTCAGTGGGGGAGGGCAAGGTTCCTCACAACTAAAGTAGCACTTAGGTGCGAGGGACCTGCAAGCTaGTGGCGGAAGTGCTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: WAQWGRARFLTTKVALRCEGPAS*WRKCCF Trigger: AAAGCAGCACTTCCGCCAGCAGCTTGCAGGTCCCTC...GCACCTAAGTGCTACTTTAGTTGTGAGGAACCTTGCCCTCCCCCACTGAGCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR CCA 90 bp | AAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTTTGGTTCAGCCAGTTGCCACTGAAAGGCACTaGATGCCCAGGGATCACCAC | + |
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Preference number: 4 (lower is better) Translates to: KPKPGTSGGRKGSLVQPVATERH*MPRDHH Trigger: GTGGTGATCCCTGGGCATCCAGTGCCTTTCAGTGGC...AACTGGCTGAACCAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR GCA 90 bp | TGGGCTCAGTGGGGGAGGGCAAGGTTCCTCACAACTAAAGTAGCACTTAGGTGCTGCTGGCGGAAGTGCTaGTTTAGGTCTGGCTTGAGC | + |
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Preference number: 4 (lower is better) Translates to: WAQWGRARFLTTKVALRCCWRKC*FRSGLS Trigger: GCTCAAGCCAGACCTAAAGCAGCACTTCCGCCAGCA...GCACCTAAGTGCTACTTTAGTTGTGAGGAACCTTGCCCTCCCCCACTGAGCCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR CCA 90 bp | AAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTTTGGTTCAGCCAGTTCTGGTCTGGGTTAGTTaGCTGACATCTGGCCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: KPKPGTSGGRKGSLVQPVLVWVS*LTSGLR Trigger: CCTCAGGCCAGATGTCAGCCAACTAACCCAGACCAG...AACTGGCTGAACCAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR TCA 90 bp | AAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTTTGGTTCAGCCAGTTCGCGGTTCAAACCACTaGAGGTCATCATTAGGCGGA | + |
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Preference number: 4 (lower is better) Translates to: KPKPGTSGGRKGSLVQPVRGSNH*RSSLGG Trigger: TCCGCCTAATGATGACCTTCAGTGGTTTGAACCGCG...AACTGGCTGAACCAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR GCA 90 bp | CCATGTAAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTTTGGTTCAGTGCTCGTACACGTCCTaGGGAAGTCGTCCGATATAC | + |
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Preference number: 4 (lower is better) Translates to: PCKPKPGTSGGRKGSLVQCSYTS*GSRPIY Trigger: GTATATCGGACGACTTCCGCAGGACGTGTACGAGCA...CTGAACCAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTTACATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR CCA 90 bp | TGGGCTCAGTGGGGGAGGGCAAGGTTCCTCACAACTAAAGTAGCACTTAGGTGCAAGAGTGGGATTAGCTaGTGCTCGTACACGTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: WAQWGRARFLTTKVALRCKSGIS*CSYTSC Trigger: GCAGGACGTGTACGAGCACCAGCTAATCCCACTCTT...GCACCTAAGTGCTACTTTAGTTGTGAGGAACCTTGCCCTCCCCCACTGAGCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR CCA 90 bp | GAAAAACAAAAACCATGTAAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCAGCAGCAGTGTCTCCTaGAGGCAGGGACCGAACGGT | + |
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Preference number: 4 (lower is better) Translates to: EKQKPCKPKPGTSGGRKGSSSVS*RQGPNG Trigger: ACCGTTCGGTCCCTGCCTCCAGGAGACACTGCTGCT...GCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTTACATGGTTTTTGTTTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR GCA 90 bp | GAAAAACAAAAACCATGTAAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCCCTAGGTTCACTCAGTaGCTCCAGCAGCTGTGCGGA | + |
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Preference number: 4 (lower is better) Translates to: EKQKPCKPKPGTSGGRKGPRFTQ*LQQLCG Trigger: TCCGCACAGCTGCTGGAGGCACTGAGTGAACCTAGG...GCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTTACATGGTTTTTGTTTTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR GCA 90 bp | TGGGCTCAGTGGGGGAGGGCAAGGTTCCTCACAACTAAAGTAGCACTTAGGTGCCTTAACCATAGTACCTaGTTCAGCCCCAGGAGACCA | + |
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Preference number: 4 (lower is better) Translates to: WAQWGRARFLTTKVALRCLNHST*FSPRRP Trigger: TGGTCTCCTGGGGCTGAAGCAGGTACTATGGTTAAG...GCACCTAAGTGCTACTTTAGTTGTGAGGAACCTTGCCCTCCCCCACTGAGCCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR CCA 90 bp | AAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTTTGGTTCAGCCAGTTCTGTTCCTAAACACTTaGTCAGGAACACTGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: KPKPGTSGGRKGSLVQPVLFLNT*SGTLGC Trigger: GCAGCCCAGTGTTCCTGACCAAGTGTTTAGGAACAG...AACTGGCTGAACCAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR GCA 90 bp | GAAAAACAAAAACCATGTAAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCAGTGGGATTAGCTGGTaGTCGTACACGTCCTGCGGA | + |
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Preference number: 4 (lower is better) Translates to: EKQKPCKPKPGTSGGRKGSGISW*SYTSCG Trigger: TCCGCAGGACGTGTACGAGCACCAGCTAATCCCACT...GCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTTACATGGTTTTTGTTTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR GCA 90 bp | CAAAAACCATGTAAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTTTGACCTCATGCCCATCCTaGCAATCAGAGGCCAACACA | + |
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Preference number: 4 (lower is better) Translates to: QKPCKPKPGTSGGRKGSLTSCPS*QSEANT Trigger: TGTGTTGGCCTCTGATTGGCAGGATGGGCATGAGGT...CAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTTACATGGTTTTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| 3UTR CAA 72 bp | CCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTTaGGTTCAGCCAGTTCTCCAAATAAAAACAAAGATT | + |
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Preference number: 4 (lower is better) Translates to: PKPGTSGGRKGS*VQPVLQIKTKI Trigger: AATCTTTGTTTTTATTTGGAGAACTGGCTGAACCAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR CAA 90 bp | AAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTTTGGTTCAGCCAGTTGCCTCCAGGGCTGCCTaGTTCTCTGGATTCACCCTC | + |
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Preference number: 5 (lower is better) Translates to: KPKPGTSGGRKGSLVQPVASRAA*FSGFTL Trigger: GAGGGTGAATCCAGAGAACAAGGCAGCCCTGGAGGC...AACTGGCTGAACCAAAGAGCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR CAA 90 bp | GAAAAACAAAAACCATGTAAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCTCTACCAGGGCCTTTTaGGCCATAGCAGCAGCTCGG | + |
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Preference number: 5 (lower is better) Translates to: EKQKPCKPKPGTSGGRKGSTRAF*AIAAAR Trigger: CCGAGCTGCTGCTATGGCCAAAAAGGCCCTGGTAGA...GCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTTACATGGTTTTTGTTTTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS-3UTR CAA 90 bp | GAAAAACAAAAACCATGTAAGCCCAAACCAGGGACAAGTGGTGGGAGGAAGGGCCCTGTTCCTAAACACTaGGTCAGGAACACTGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: EKQKPCKPKPGTSGGRKGPVPKH*VRNTGL Trigger: CAGCCCAGTGTTCCTGACCAAGTGTTTAGGAACAGG...GCCCTTCCTCCCACCACTTGTCCCTGGTTTGGGCTTACATGGTTTTTGTTTTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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| CDS GCA 72 bp | GAGGCAGCCCGTCCACCGTCAGCTCGCACTTCTCGGTaGTTCGGCACACCAGGAGCTGGCAAGAAGGCCGCA | + |
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Preference number: 6 (lower is better) Translates to: EAARPPSARTSR*FGTPGAGKKAA Trigger: TGCGGCCTTCTTGCCAGCTCCTGGTGTGCCGAAGCACCGAGAAGTGCGAGCTGACGGTGGACGGGCTGCCTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061522.8 |
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