Pregenerated sensors for DNASE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005980Ensembl transcript IDs: ENSMUST00000006136.11, ENSMUST00000120009.8, ENSMUST00000137748.8, ENSMUST00000157044.8, ENSMUST00000175755.2, ENSMUST00000177337.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCACTGATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTaGAAATCAAAAGGAACAGCCGAGTTGGGAACAACAGCAGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: SLMASASWLESPYSA*KSKGTAELGTTAAW Trigger: CCAGGCTGCTGTTGTTCCCAACTCGGCTGTTCCTTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| 3UTR GCA 90 bp | ATGGTCACTGATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTaGTTGGAAATCAAAAGGAACAGCCGAGTTGGGAACAACAGCAGC | + |
|
Preference number: 1 (lower is better) Translates to: MVTDGFSQLVGKSVF*LEIKRNSRVGNNSS Trigger: GCTGCTGTTGTTCCCAACTCGGCTGTTCCTTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAGTGACCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| 3UTR CAA 90 bp | GTCACTGATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTaGGAAATCAAAAGGAACAGCCGAGTTGGGAACAACAGCAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: VTDGFSQLVGKSVFC*EIKRNSRVGNNSSL Trigger: CAGGCTGCTGTTGTTCCCAACTCGGCTGTTCCTTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAGTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| 3UTR-3UTR TCA 90 bp | TCACTGATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAATAAGCACAGTGTGTTaGTGTGACTGTGGTGTCCGC | + |
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Preference number: 2 (lower is better) Translates to: SLMASASWLESPYSAWKSISTVC*CDCGVR Trigger: GCGGACACCACAGTCACATCAACACACTGTGCTTAT...TGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| 3UTR-3UTR CCA 90 bp | TTATTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTTTCTCTGTTCTGAGATaGTGGAATGCTGTAGTACCA | + |
|
Preference number: 2 (lower is better) Translates to: LFTSIKQYFLVPVADVFSFSVLR*WNAVVP Trigger: TGGTACTACAGCATTCCACCATCTCAGAACAGAGAA...AGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| 3UTR-3UTR GCA 90 bp | TTATTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGCAGTATGGCTGAACTaGTCAATGACATCAGATTTT | + |
|
Preference number: 2 (lower is better) Translates to: LFTSIKQYFLVPVADVFSAVWLN*SMTSDF Trigger: AAAATCTGATGTCATTGAGCAGTTCAGCCATACTGC...AGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000175755.2 |
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| 3UTR-3UTR CCA 90 bp | TTATTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTCAAATAGAGTTGAAGTaGATTCTTCCTCACCAGAAG | + |
|
Preference number: 2 (lower is better) Translates to: LFTSIKQYFLVPVADVFSQIELK*ILPHQK Trigger: CTTCTGGTGAGGAAGAATCCACTTCAACTCTATTTG...AGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| 3UTR CCA 72 bp | GCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTaGAAATCAAAAGGAACAGCCGAGTTGGGAACAACA | + |
|
Preference number: 3 (lower is better) Translates to: ASASWLESPYSA*KSKGTAELGTT Trigger: TGTTGTTCCCAACTCGGCTGTTCCTTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| 3UTR CCA 72 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATaGCTGAACTGCTCAATGACATCAGATTTTTCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: RVEVDSSSPEAV*LNCSMTSDFSE Trigger: CTCAGAAAAATCTGATGTCATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000175755.2 |
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| CDS-3UTR GCA 90 bp | TCACTGATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAAGCTTCTGTTGGGGCTaGATGCAAGGGCACGATCGC | + |
|
Preference number: 4 (lower is better) Translates to: SLMASASWLESPYSAWKSSFCWG*MQGHDR Trigger: GCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCT...TGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR GCA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGAGAGTCCCAGCCAGCTaGAGCAGGTTGACCAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMRVPAS*SRLTKV Trigger: CACCTTGGTCAACCTGCTGCAGCTGGCTGGGACTCT...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR GCA 90 bp | CTGATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAAAAAGAGTCCCAGCCAGCTaGAGCAGGTTGACCAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LMASASWLESPYSAWKSKRVPAS*SRLTKV Trigger: CACCTTGGTCAACCTGCTGCAGCTGGCTGGGACTCT...TTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR GCA 90 bp | GTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGACAAGCTTCTGTTGGGGCTaGATGCAAGGGCACGATCGC | + |
|
Preference number: 4 (lower is better) Translates to: VEVDSSSPEAVWLNCSMTSFCWG*MQGHDR Trigger: GCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCT...TGTCATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR GCA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGAGCTTCTGTTGGGGCTaGATGCAAGGGCACGATCGC | + |
|
Preference number: 4 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMSFCWG*MQGHDR Trigger: GCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCT...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CCA 90 bp | GGAAATCAAAAGGAACAGCCGAGTTGGGAACAACAGCAGCCTGGAGCAGAGCTCGAACTTAACAATGGCTaGCTCTCTGCTGAAGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: GNQKEQPSWEQQQPGAELELNNG*LSAEGV Trigger: GACACCTTCAGCAGAGAGCCAGCCATTGTTAAGTTC...GAGCTCTGCTCCAGGCTGCTGTTGTTCCCAACTCGGCTGTTCCTTTTGATTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR CCA 90 bp | TCACTGATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCATCAGGGATCAGCCACTaGAAGATGGGGCTTGTCCGA | + |
|
Preference number: 4 (lower is better) Translates to: SLMASASWLESPYSAWKSSGISH*KMGLVR Trigger: TCGGACAAGCCCCATCTTCCAGTGGCTGATCCCTGA...TGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR CCA 90 bp | AGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAAAAGGAACAGCCGAGTTGCCAACAGCAACCAGGTaGGAGTCTCTGACCTCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SWLESPYSAWKSKGTAELPTATR*ESLTSW Trigger: CCAAGAGGTCAGAGACTCCCACCTGGTTGCTGTTGG...CAACTCGGCTGTTCCTTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR CCA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGTTGTCCGAAGGCGAATaGAGGACCACTGGGAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMLSEGE*RTTGRK Trigger: CTTCCTCCCAGTGGTCCTCCATTCGCCTTCGGACAA...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| CDS-3UTR CCA 90 bp | ATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAAAAGGATTGTCCGAAGGCGAATaGAGGACCACTGGGAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: MASASWLESPYSAWKSKGLSEGE*RTTGRK Trigger: CTTCCTCCCAGTGGTCCTCCATTCGCCTTCGGACAA...TCCTTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR CCA 90 bp | CTGATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAAAATCAGCCACTGGAAGATaGGGCTTGTCCGAAGGCGAA | + |
|
Preference number: 4 (lower is better) Translates to: LMASASWLESPYSAWKSKSATGR*GLSEGE Trigger: TTCGCCTTCGGACAAGCCCCATCTTCCAGTGGCTGA...TTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR CCA 90 bp | GTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGACATCAGGGATCAGCCACTaGAAGATGGGGCTTGTCCGA | + |
|
Preference number: 4 (lower is better) Translates to: VEVDSSSPEAVWLNCSMTSGISH*KMGLVR Trigger: TCGGACAAGCCCCATCTTCCAGTGGCTGATCCCTGA...TGTCATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| CDS-3UTR CCA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGTCAGGGATCAGCCACTaGAAGATGGGGCTTGTCCGA | + |
|
Preference number: 4 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMSGISH*KMGLVR Trigger: TCGGACAAGCCCCATCTTCCAGTGGCTGATCCCTGA...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| CDS-3UTR TCA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGCACAGTGTGTTGATGTaGCTGTGGTGTCCGCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMHSVLM*LWCPHC Trigger: ACAGTGCGGACACCACAGTCACATCAACACACTGTG...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| CDS-3UTR GCA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGTCTGTTGGGGCTGCATaGAAGGGCACGATCGCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMSVGAA*KGTIAN Trigger: ATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGA...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR GCA 90 bp | ACTGATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAAATCTGTTGGGGCTGCATaGAAGGGCACGATCGCAAAT | + |
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Preference number: 4 (lower is better) Translates to: TDGFSQLVGKSVFCLEIKSVGAA*KGTIAN Trigger: ATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGA...TTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR CCA 90 bp | AATAGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCATCAGCCACTGGAAGATaGGGCTTGTCCGAAGGCGAA | + |
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Preference number: 4 (lower is better) Translates to: NRVEVDSSSPEAVWLNCSSATGR*GLSEGE Trigger: TTCGCCTTCGGACAAGCCCCATCTTCCAGTGGCTGA...TGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCTATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| CDS-3UTR TCA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGATAAGCACAGTGTGTTaGTGTGACTGTGGTGTCCGC | + |
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Preference number: 4 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMISTVC*CDCGVR Trigger: GCGGACACCACAGTCACATCAACACACTGTGCTTAT...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| CDS-3UTR CCA 90 bp | GATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGACATCAGATTTTTCAGCCACTGGAAGATaGGGCTTGTCCGAAGGCGAA | + |
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Preference number: 4 (lower is better) Translates to: DSSSPEAVWLNCSMTSDFSATGR*GLSEGE Trigger: TTCGCCTTCGGACAAGCCCCATCTTCCAGTGGCTGA...AAAATCTGATGTCATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000175755.2 |
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| CDS-3UTR GCA 90 bp | AATAGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCACCGAATGTTGAAGGCTaGAATTCTCAGAGTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: NRVEVDSSSPEAVWLNCSPNVEG*NSQSPS Trigger: GCTGGGACTCTGAGAATTGCAGCCTTCAACATTCGG...TGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CCA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGGAACTTAACAATGGCTaGCTCTCTGCTGAAGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMELNNG*LSAEGV Trigger: GACACCTTCAGCAGAGAGCCAGCCATTGTTAAGTTC...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CCA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGCTTCAGCCAGCTGGTTaGAAAGTCCGTATTCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMLQPAG*KVRILL Trigger: AAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAG...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR GCA 90 bp | TTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGTTAGAGTCCCAGCCAGCTaGAGCAGGTTGACCAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: FTSIKQYFLVPVADVFSVRVPAS*SRLTKV Trigger: CACCTTGGTCAACCTGCTGCAGCTGGCTGGGACTCT...AACAGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CCA 90 bp | TTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGTTCCAACAGCAACCAGGTaGGAGTCTCTGACCTCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: FTSIKQYFLVPVADVFSVPTATR*ESLTSW Trigger: CCAAGAGGTCAGAGACTCCCACCTGGTTGCTGTTGG...AACAGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CCA 90 bp | TTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGTTTTGTCCGAAGGCGAATaGAGGACCACTGGGAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: FTSIKQYFLVPVADVFSVLSEGE*RTTGRK Trigger: CTTCCTCCCAGTGGTCCTCCATTCGCCTTCGGACAA...AACAGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| CDS-3UTR CCA 90 bp | GTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGACAAGTCCGTATTCTGCTTaGAAATCAAAAGGAACAGCC | + |
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Preference number: 4 (lower is better) Translates to: VEVDSSSPEAVWLNCSMTSPYSA*KSKGTA Trigger: GGCTGTTCCTTTTGATTTCCAAGCAGAATACGGACT...TGTCATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR GCA 90 bp | TTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGTTTCTGTTGGGGCTGCATaGAAGGGCACGATCGCAAAT | + |
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Preference number: 4 (lower is better) Translates to: FTSIKQYFLVPVADVFSVSVGAA*KGTIAN Trigger: ATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGA...AACAGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CCA 90 bp | TTATTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTTCAGCCACTGGAAGATaGGGCTTGTCCGAAGGCGAA | + |
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Preference number: 4 (lower is better) Translates to: LFTSIKQYFLVPVADVFSSATGR*GLSEGE Trigger: TTCGCCTTCGGACAAGCCCCATCTTCCAGTGGCTGA...AGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| CDS-3UTR CCA 90 bp | AATAGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAAGTCCGTATTCTGCTTaGAAATCAAAAGGAACAGCC | + |
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Preference number: 4 (lower is better) Translates to: NRVEVDSSSPEAVWLNCSSPYSA*KSKGTA Trigger: GGCTGTTCCTTTTGATTTCCAAGCAGAATACGGACT...TGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR TCA 90 bp | TTATTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTCACAGTGTGTTGATGTaGCTGTGGTGTCCGCACTGT | + |
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Preference number: 4 (lower is better) Translates to: LFTSIKQYFLVPVADVFSHSVLM*LWCPHC Trigger: ACAGTGCGGACACCACAGTCACATCAACACACTGTG...AGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000175755.2 |
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| CDS-3UTR CCA 90 bp | TTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAAAAGGAACAGCTTGGACCTCAGTGTATaGGGAAAAGAACTTAACAAT | + |
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Preference number: 4 (lower is better) Translates to: FSQLVGKSVFCLEIKRNSLDLSV*GKELNN Trigger: ATTGTTAAGTTCTTTTCCCCATACACTGAGGTCCAA...GCTGTTCCTTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR GCA 90 bp | TTATTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTCCGAATGTTGAAGGCTaGAATTCTCAGAGTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: LFTSIKQYFLVPVADVFSPNVEG*NSQSPS Trigger: GCTGGGACTCTGAGAATTGCAGCCTTCAACATTCGG...AGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CCA 90 bp | AATAGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCATTGGACCTCAGTGTATaGGGAAAAGAACTTAACAAT | + |
|
Preference number: 4 (lower is better) Translates to: NRVEVDSSSPEAVWLNCSLDLSV*GKELNN Trigger: ATTGTTAAGTTCTTTTCCCCATACACTGAGGTCCAA...TGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CCA 90 bp | TTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGTTCTTCAGCCAGCTGGTTaGAAAGTCCGTATTCTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: FTSIKQYFLVPVADVFSVLQPAG*KVRILL Trigger: AAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAG...AACAGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CCA 90 bp | TTATTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGAACTTAACAATGGCTaGCTCTCTGCTGAAGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: LFTSIKQYFLVPVADVFSELNNG*LSAEGV Trigger: GACACCTTCAGCAGAGAGCCAGCCATTGTTAAGTTC...AGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CCA 90 bp | TTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGTTTTGGACCTCAGTGTATaGGGAAAAGAACTTAACAAT | + |
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Preference number: 4 (lower is better) Translates to: FTSIKQYFLVPVADVFSVLDLSV*GKELNN Trigger: ATTGTTAAGTTCTTTTCCCCATACACTGAGGTCCAA...AACAGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS GCA 90 bp | AACATCGTAGAGGGCGTCGATCTCACTCACAGCTTCTGTTGGGGCTaGATGCAAGGGCACGATCGCAAATTCTTGGACCTCAGTGTATGG | + |
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Preference number: 5 (lower is better) Translates to: NIVEGVDLTHSFCWG*MQGHDRKFLDLSVW Trigger: CCATACACTGAGGTCCAAGAATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCTGTGAGTGAGATCGACGCCCTCTACGATGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 |
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| CDS GCA 90 bp | CCAGCATTGAAGTCTCCCATGAACATGATGTCCTACCAGCAGACATaGAGCTTCTGTTGGGGCTGCATGCAAGGGCACGATCGCAAATTC | + |
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Preference number: 5 (lower is better) Translates to: PALKSPMNMMSYQQT*SFCWGCMQGHDRKF Trigger: GAATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCTGCATGTCTGCTGGTAGGACATCATGTTCATGGGAGACTTCAATGCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR CAA 90 bp | CCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAAAAGGAACAGCCGAGTGCCAGCTGCAGCAGGTaGACCAAGGTGAGCAGTGTT | + |
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Preference number: 5 (lower is better) Translates to: PAGWKVRILLGNQKEQPSASCSR*TKVSSV Trigger: AACACTGCTCACCTTGGTCAACCTGCTGCAGCTGGC...ACTCGGCTGTTCCTTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS CCA 90 bp | GGCTGCATGCAAGGGCACGATCGCAAATTCTTGGACCTCAGTGTATaGGGAAAAGAACTTAACAATGGCTGGCTCTCTGCTGAAGGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: GCMQGHDRKFLDLSV*GKELNNGWLSAEGV Trigger: GACACCTTCAGCAGAGAGCCAGCCATTGTTAAGTTCTTTTCCCCATACACTGAGGTCCAAGAATTTGCGATCGTGCCCTTGCATGCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 ENSMUST00000177337.2 |
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| CDS-3UTR CAA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGCACTCACAGCTTCTGTaGGGGCTGCATGCAAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMHSQLL*GLHARA Trigger: TGCCCTTGCATGCAGCCCCAACAGAAGCTGTGAGTG...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CAA 90 bp | ATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAAAAGGAGACATGCAGCTTCTGTaGGGGCTGCATGCAAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: MASASWLESPYSAWKSKGDMQLL*GLHARA Trigger: TGCCCTTGCATGCAGCCCCAACAGAAGCTGCATGTC...TCCTTTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS-3UTR CAA 90 bp | AGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGGCTTCAGCCAGCTGGTaGGAAAGTCCGTATTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: RVEVDSSSPEAVWLNCSMASASW*ESPYSA Trigger: AGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGC...CATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CAA 90 bp | GTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAATGACACACGATCGCAAATTCTaGGACCTCAGTGTATGGGGA | + |
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Preference number: 5 (lower is better) Translates to: VEVDSSSPEAVWLNCSMTHDRKF*DLSVWG Trigger: TCCCCATACACTGAGGTCCAAGAATTTGCGATCGTG...TGTCATTGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CAA 90 bp | ACTGATGGCTTCAGCCAGCTGGTTGGAAAGTCCGTATTCTGCTTGGAAATCAAACACGATCGCAAATTCTaGGACCTCAGTGTATGGGGA | + |
|
Preference number: 5 (lower is better) Translates to: TDGFSQLVGKSVFCLEIKHDRKF*DLSVWG Trigger: TCCCCATACACTGAGGTCCAAGAATTTGCGATCGTG...TTTGATTTCCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS CCA 90 bp | AAATTCTTGGACCTCAGTGTATGGGGAAAAGAACTTAACAATGGCTaGCTCTCTGCTGAAGGTGTCATTTCCACAGGGTTCACAGCCATC | + |
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Preference number: 5 (lower is better) Translates to: KFLDLSVWGKELNNG*LSAEGVISTGFTAI Trigger: GATGGCTGTGAACCCTGTGGAAATGACACCTTCAGCAGAGAGCCAGCCATTGTTAAGTTCTTTTCCCCATACACTGAGGTCCAAGAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 ENSMUST00000177337.2 |
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| CDS-3UTR CAA 90 bp | TTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGTTGCCAGCTGCAGCAGGTaGACCAAGGTGAGCAGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: FTSIKQYFLVPVADVFSVASCSR*TKVSSV Trigger: AACACTGCTCACCTTGGTCAACCTGCTGCAGCTGGC...AACAGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CAA 90 bp | TTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGTTCACTCACAGCTTCTGTaGGGGCTGCATGCAAGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: FTSIKQYFLVPVADVFSVHSQLL*GLHARA Trigger: TGCCCTTGCATGCAGCCCCAACAGAAGCTGTGAGTG...AACAGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CAA 90 bp | TTATTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGCCAGCTGCAGCAGGTaGACCAAGGTGAGCAGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: LFTSIKQYFLVPVADVFSASCSR*TKVSSV Trigger: AACACTGCTCACCTTGGTCAACCTGCTGCAGCTGGC...AGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CAA 90 bp | AATAGAGTTGAAGTGGATTCTTCCTCACCAGAAGCAGTATGGCTGAACTGCTCAAAGTCCGTATTCTGCTaGGAAATCAAAAGGAACAGC | + |
|
Preference number: 5 (lower is better) Translates to: NRVEVDSSSPEAVWLNCSKSVFC*EIKRNS Trigger: GCTGTTCCTTTTGATTTCCAAGCAGAATACGGACTT...TGAGCAGTTCAGCCATACTGCTTCTGGTGAGGAAGAATCCACTTCAACTCTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CAA 90 bp | TTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTGTTGCTTCAGCCAGCTGGTaGGAAAGTCCGTATTCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: FTSIKQYFLVPVADVFSVASASW*ESPYSA Trigger: AGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGC...AACAGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS-3UTR CAA 90 bp | TTATTTACTTCAATTAAACAGTATTTCTTAGTCCCCGTGGCAGACGTTTTCTCTAAGTCCGTATTCTGCTaGGAAATCAAAAGGAACAGC | + |
|
Preference number: 5 (lower is better) Translates to: LFTSIKQYFLVPVADVFSKSVFC*EIKRNS Trigger: GCTGTTCCTTTTGATTTCCAAGCAGAATACGGACTT...AGAGAAAACGTCTGCCACGGGGACTAAGAAATACTGTTTAATTGAAGTAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 |
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| CDS GCA 72 bp | GAGGGCGTCGATCTCACTCACAGCTTCTGTTGGGGCTaGATGCAAGGGCACGATCGCAAATTCTTGGACCTC | + |
|
Preference number: 6 (lower is better) Translates to: EGVDLTHSFCWG*MQGHDRKFLDL Trigger: GAGGTCCAAGAATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCTGTGAGTGAGATCGACGCCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 |
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| CDS GCA 72 bp | CCTACCAGCAGACATGCAGCTTCTGTTGGGGCTGCATaGAAGGGCACGATCGCAAATTCTTGGACCTCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: PTSRHAASVGAA*KGTIANSWTSV Trigger: CACTGAGGTCCAAGAATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCTGCATGTCTGCTGGTAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS CCA 72 bp | ATCGTAGAGGGCGTCGATCTCACTCACAGCTTCTGTTaGGGCTGCATGCAAGGGCACGATCGCAAATTCTTG | + |
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Preference number: 6 (lower is better) Translates to: IVEGVDLTHSFC*GCMQGHDRKFL Trigger: CAAGAATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCTGTGAGTGAGATCGACGCCCTCTACGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 |
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| CDS CAA 72 bp | CATCGTAGAGGGCGTCGATCTCACTCACAGCTTCTGTaGGGGCTGCATGCAAGGGCACGATCGCAAATTCTT | + |
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Preference number: 6 (lower is better) Translates to: HRRGRRSHSQLL*GLHARARSQIL Trigger: AAGAATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCTGTGAGTGAGATCGACGCCCTCTACGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 |
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| CDS CAA 90 bp | GTCTCCCATGAACATGATGTCCTACCAGCAGACATGCAGCTTCTGTaGGGGCTGCATGCAAGGGCACGATCGCAAATTCTTGGACCTCAG | + |
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Preference number: 6 (lower is better) Translates to: VSHEHDVLPADMQLL*GLHARARSQILGPQ Trigger: CTGAGGTCCAAGAATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCTGCATGTCTGCTGGTAGGACATCATGTTCATGGGAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS GCA 72 bp | AAGTCTCCCATGAACATGATGTCCTACCAGCAGACATaGAGCTTCTGTTGGGGCTGCATGCAAGGGCACGAT | + |
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Preference number: 6 (lower is better) Translates to: KSPMNMMSYQQT*SFCWGCMQGHD Trigger: ATCGTGCCCTTGCATGCAGCCCCAACAGAAGCTGCATGTCTGCTGGTAGGACATCATGTTCATGGGAGACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS CAA 90 bp | GAGAGGGTAGCATTGGACATCTTAGTCTCCCCAAAAGTCCGAATGTaGAAGGCTGCAATTCTCAGAGTCCCAGCCAGCTGCAGCAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: ERVALDILVSPKVRM*KAAILRVPASCSRL Trigger: CAACCTGCTGCAGCTGGCTGGGACTCTGAGAATTGCAGCCTTCAACATTCGGACTTTTGGGGAGACTAAGATGTCCAATGCTACCCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 ENSMUST00000157044.8 ENSMUST00000177337.2 |
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| CDS CAA 72 bp | GCATTGGACATCTTAGTCTCCCCAAAAGTCCGAATGTaGAAGGCTGCAATTCTCAGAGTCCCAGCCAGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: ALDILVSPKVRM*KAAILRVPASC Trigger: GCAGCTGGCTGGGACTCTGAGAATTGCAGCCTTCAACATTCGGACTTTTGGGGAGACTAAGATGTCCAATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 ENSMUST00000157044.8 ENSMUST00000177337.2 |
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| CDS CAA 72 bp | GAACATGATGTCCTACCAGCAGACATGCAGCTTCTGTaGGGGCTGCATGCAAGGGCACGATCGCAAATTCTT | + |
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Preference number: 6 (lower is better) Translates to: EHDVLPADMQLL*GLHARARSQIL Trigger: AAGAATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCTGCATGTCTGCTGGTAGGACATCATGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177337.2 |
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| CDS CAA 90 bp | ATCCAGGAGCTTCCCAACAGCAACCAGGTGGGAGTCTCTGACCTCTaGGATAACAGCGATGTCATAGCGACTCAGGATTTTCACAAAGTA | + |
|
Preference number: 6 (lower is better) Translates to: IQELPNSNQVGVSDL*DNSDVIATQDFHKV Trigger: TACTTTGTGAAAATCCTGAGTCGCTATGACATCGCTGTTATCCAAGAGGTCAGAGACTCCCACCTGGTTGCTGTTGGGAAGCTCCTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 ENSMUST00000177337.2 |
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| CDS CCA 72 bp | GACCTCAGTGTATGGGGAAAAGAACTTAACAATGGCTaGCTCTCTGCTGAAGGTGTCATTTCCACAGGGTTC | + |
|
Preference number: 6 (lower is better) Translates to: DLSVWGKELNNG*LSAEGVISTGF Trigger: GAACCCTGTGGAAATGACACCTTCAGCAGAGAGCCAGCCATTGTTAAGTTCTTTTCCCCATACACTGAGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 ENSMUST00000177337.2 |
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| CDS CCA 72 bp | CAAGGGCACGATCGCAAATTCTTGGACCTCAGTGTATaGGGAAAAGAACTTAACAATGGCTGGCTCTCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: QGHDRKFLDLSV*GKELNNGWLSA Trigger: AGCAGAGAGCCAGCCATTGTTAAGTTCTTTTCCCCATACACTGAGGTCCAAGAATTTGCGATCGTGCCCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 ENSMUST00000177337.2 |
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| CDS CAA 90 bp | TCTGCTGAAGGTGTCATTTCCACAGGGTTCACAGCCATCATCATATaGATAGCTGTCCAGAATAGACACCTGGTCAGGCCTGTACACAAA | + |
|
Preference number: 6 (lower is better) Translates to: SAEGVISTGFTAIII*IAVQNRHLVRPVHK Trigger: TTTGTGTACAGGCCTGACCAGGTGTCTATTCTGGACAGCTATCAATATGATGATGGCTGTGAACCCTGTGGAAATGACACCTTCAGCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006136.11 ENSMUST00000120009.8 ENSMUST00000137748.8 ENSMUST00000177337.2 |
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