Pregenerated sensors for DNAJC9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021811

Ensembl transcript IDs: ENSMUST00000022345.7

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	GTTCTGAGGATGTTCTCCATAGGTGGAGTGTTTCTCGTCAGTGCATaGACAGCAGCAAGAGAAACTAATATTCTAAATAGGGGCCCACAA	+
Preference number: 1 (lower is better) Translates to: VLRMFSIGGVFLVSA*TAARETNILNRGPQ Trigger: TTGTGGGCCCCTATTTAGAATATTAGTTTCTCTTGCTGCTGTGCATGCACTGACGAGAAACACTCCACCTATGGAGAACATCCTCAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
3UTR GCA 90 bp	ATAAAAAGTTCAAAAGAGGCCAGTGAAATGCCTAAGCCTGTGACCTaGAAAGACAGGATGTGTGCCAAAGCCAGCCTGTCTGTTACAATG	+
Preference number: 1 (lower is better) Translates to: IKSSKEASEMPKPVT*KDRMCAKASLSVTM Trigger: CATTGTAACAGACAGGCTGGCTTTGGCACACATCCTGTCTTTGCAGGTCACAGGCTTAGGCATTTCACTGGCCTCTTTTGAACTTTTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
3UTR CCA 72 bp	CGGTTCAGCAAGTGTTCTGAGGATGTTCTCCATAGGTaGAGTGTTTCTCGTCAGTGCATGCACAGCAGCAAG	+
Preference number: 3 (lower is better) Translates to: RFSKCSEDVLHR*SVSRQCMHSSK Trigger: CTTGCTGCTGTGCATGCACTGACGAGAAACACTCCACCTATGGAGAACATCCTCAGAACACTTGCTGAACCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
3UTR TCA 72 bp	AAAGTTCAAAAGAGGCCAGTGAAATGCCTAAGCCTGTaGCCTGCAAAGACAGGATGTGTGCCAAAGCCAGCC	+
Preference number: 3 (lower is better) Translates to: KVQKRPVKCLSL*PAKTGCVPKPA Trigger: GGCTGGCTTTGGCACACATCCTGTCTTTGCAGGTCACAGGCTTAGGCATTTCACTGGCCTCTTTTGAACTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR GCA 90 bp	AATAGGGGCCCACAAAAGCAAATGTCAGACCCACCCTCCCAACTATCACCACTAGGTAGAGGTCGGCGGTaGCAAACACCTGCTCGCACA	+
Preference number: 4 (lower is better) Translates to: NRGPQKQMSDPPSQLSPLGRGRR*QTPART Trigger: TGTGCGAGCAGGTGTTTGGCACCGCCGACCTCTACC...TAGTGGTGATAGTTGGGAGGGTGGGTCTGACATTTGCTTTTGTGGGCCCCTATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR CCA 90 bp	AATGGCTGTCATCATTTTGTCTACACTGTACCACTGACACATAAGGACTCAGGAACTCTTCCCAAGATCTaGAAGCGGCGGGTGGCGTCC	+
Preference number: 4 (lower is better) Translates to: NGCHHFVYTVPLTHKDSGTLPKI*KRRVAS Trigger: GGACGCCACCCGCCGCTTCCAGATCTTGGGAAGAGT...TCCTGAGTCCTTATGTGTCAGTGGTACAGTGTAGACAAAATGATGACAGCCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR CCA 90 bp	GGTGGAGTGTTTCTCGTCAGTGCATGCACAGCAGCAAGAGAAACTAATATTCTATCCCAGTCCCGGTCTTaGTTGAGGCCAGCAGAGTCT	+
Preference number: 4 (lower is better) Translates to: GGVFLVSACTAARETNILSQSRS*LRPAES Trigger: AGACTCTGCTGGCCTCAACCAAGACCGGGACTGGGA...TAGAATATTAGTTTCTCTTGCTGCTGTGCATGCACTGACGAGAAACACTCCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR GCA 90 bp	AGCAAGTGTTCTGAGGATGTTCTCCATAGGTGGAGTGTTTCTCGTCAGTGCATGTCTGCTCTGGATGAGTaGTTTCAAGTTATCCACTCC	+
Preference number: 4 (lower is better) Translates to: SKCSEDVLHRWSVSRQCMSALDE*FQVIHS Trigger: GGAGTGGATAACTTGAAAGCACTCATCCAGAGCAGA...CATGCACTGACGAGAAACACTCCACCTATGGAGAACATCCTCAGAACACTTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR CCA 90 bp	ATCTTCATAGACCAATGGAGTCATTTAAATAATCCACCAGACCTTTGTCATTTCTCTGGAAGCGGCGGGTaGCGTCCTCTTTCTGGTCCT	+
Preference number: 4 (lower is better) Translates to: IFIDQWSHLNNPPDLCHFSGSGG*RPLSGP Trigger: AGGACCAGAAAGAGGACGCCACCCGCCGCTTCCAGA...GAAATGACAAAGGTCTGGTGGATTATTTAAATGACTCCATTGGTCTATGAAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR GCA 90 bp	AATGGCTGTCATCATTTTGTCTACACTGTACCACTGACACATAAGGACTCAGGACTTTTCCTTCTTGAGTaGTGTTCTTTTCCCTCCTTT	+
Preference number: 4 (lower is better) Translates to: NGCHHFVYTVPLTHKDSGLFLLE*CSFPSF Trigger: AAAGGAGGGAAAAGAACAGCACTCAAGAAGGAAAAG...TCCTGAGTCCTTATGTGTCAGTGGTACAGTGTAGACAAAATGATGACAGCCATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR CCA 90 bp	GGTGGAGTGTTTCTCGTCAGTGCATGCACAGCAGCAAGAGAAACTAATATTCTATTCTTTTCCCTCCTTTaGAAGGTTTGCAGTATTTTG	+
Preference number: 4 (lower is better) Translates to: GGVFLVSACTAARETNILFFSLL*KVCSIL Trigger: CAAAATACTGCAAACCTTCCAAAGGAGGGAAAAGAA...TAGAATATTAGTTTCTCTTGCTGCTGTGCATGCACTGACGAGAAACACTCCACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR CCA 90 bp	AGACAACTCCTCTCAAAGGTTACATTAATGGCTGTCATCATTTTGTCTACACTGTCCTTTTGTCTGCTCTaGATGAGTGCTTTCAAGTTA	+
Preference number: 4 (lower is better) Translates to: RQLLSKVTLMAVIILSTLSFCLL*MSAFKL Trigger: TAACTTGAAAGCACTCATCCAGAGCAGACAAAAGGA...CAGTGTAGACAAAATGATGACAGCCATTAATGTAACCTTTGAGAGGAGTTGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR CAA 90 bp	AGCAAGTGTTCTGAGGATGTTCTCCATAGGTGGAGTGTTTCTCGTCAGTGCATGCCGCACGCCCAGCACTaGGTAGAGGTCGGCGGTGCC	+
Preference number: 5 (lower is better) Translates to: SKCSEDVLHRWSVSRQCMPHAQH*VEVGGA Trigger: GGCACCGCCGACCTCTACCAAGTGCTGGGCGTGCGG...CATGCACTGACGAGAAACACTCCACCTATGGAGAACATCCTCAGAACACTTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS GCA 90 bp	GAGGCCAGCAGAGTCTTCGTCCACTGTCCCCTGTTCATCGTACACTaGTTTCTGTTCCTTGTCACTCAGAACCGCGTAGACTCTTCCCAA	+
Preference number: 5 (lower is better) Translates to: EASRVFVHCPLFIVH*FLFLVTQNRVDSSQ Trigger: TTGGGAAGAGTCTACGCGGTTCTGAGTGACAAGGAACAGAAAGCAGTGTACGATGAACAGGGGACAGTGGACGAAGACTCTGCTGGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR CAA 90 bp	GGTGGAGTGTTTCTCGTCAGTGCATGCACAGCAGCAAGAGAAACTAATATTCTACATTTCTTTTCCTTCTaGAGTGCTGTTCTTTTCCCT	+
Preference number: 5 (lower is better) Translates to: GGVFLVSACTAARETNILHFFSF*SAVLFP Trigger: AGGGAAAAGAACAGCACTCAAGAAGGAAAAGAAATG...TAGAATATTAGTTTCTCTTGCTGCTGTGCATGCACTGACGAGAAACACTCCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR CAA 90 bp	CTCCTCTCAAAGGTTACATTAATGGCTGTCATCATTTTGTCTACACTGTACCACAAGGTTTGCAGTATTTaGCTTCCATTTGAGCCAGAA	+
Preference number: 5 (lower is better) Translates to: LLSKVTLMAVIILSTLYHKVCSI*LPFEPE Trigger: TTCTGGCTCAAATGGAAGCAAAATACTGCAAACCTT...GTGGTACAGTGTAGACAAAATGATGACAGCCATTAATGTAACCTTTGAGAGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS-3UTR CAA 90 bp	CTCCTCTCAAAGGTTACATTAATGGCTGTCATCATTTTGTCTACACTGTACCACGTTCTTTTCCCTCCTTaGGAAGGTTTGCAGTATTTT	+
Preference number: 5 (lower is better) Translates to: LLSKVTLMAVIILSTLYHVLFPP*EGLQYF Trigger: AAAATACTGCAAACCTTCCAAAGGAGGGAAAAGAAC...GTGGTACAGTGTAGACAAAATGATGACAGCCATTAATGTAACCTTTGAGAGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS GCA 72 bp	CGCGCCGCACGCCCAGCACTTGGTAGAGGTCGGCGGTaGCAAACACCTGCTCGCACAGCTCCAGCAGCCCCA	+
Preference number: 6 (lower is better) Translates to: RAARPALGRGRR*QTPARTAPAAP Trigger: TGGGGCTGCTGGAGCTGTGCGAGCAGGTGTTTGGCACCGCCGACCTCTACCAAGTGCTGGGCGTGCGGCGCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022345.7
CDS CCA 72 bp	AAGAGTAATCTCCAATATGCATCCCAGTCCCGGTCTTaGTTGAGGCCAGCAGAGTCTTCGTCCACTGTCCCC	+
Preference number: 6 (lower is better) Translates to: KSNLQYASQSRS*LRPAESSSTVP Trigger: GGGGACAGTGGACGAAGACTCTGCTGGCCTCAACCAAGACCGGGACTGGGATGCATATTGGAGATTACTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022345.7