RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DNAJC6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028528

Ensembl transcript IDs: ENSMUST00000038207.12, ENSMUST00000094953.11, ENSMUST00000106929.10, ENSMUST00000106930.8, ENSMUST00000106933.2, ENSMUST00000149047.8, ENSMUST00000154120.9

Found 576 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTaGGAGGGGCCAGATCCACTGGGTGGGTGGGACTCTGACTCCTCA +
Preference number: 1 (lower is better)
Translates to: FHMHPTANPAEIIPG*EGPDPLGGWDSDSS
Trigger: TGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTGGCCCCTCCCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CCA 90 bp AGACCTAGCGAAGTCCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTaGGAAGCTCTGAGCACTGGAGTGAACTGCCACCAGCTGATGTCA +
Preference number: 1 (lower is better)
Translates to: RPSEVPAVGAASPAK*EALSTGVNCHQLMS
Trigger: TGACATCAGCTGGTGGCAGTTCACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGGACTTCGCTAGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR GCA 90 bp ATGCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTaGAAGGTCAGCTCACTAGAGTTCCTCTTGGTGCTATGGACTTCA +
Preference number: 1 (lower is better)
Translates to: MLSRLPKGQAGMSRL*KVSSLEFLLVLWTS
Trigger: TGAAGTCCATAGCACCAAGAGGAACTCTAGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CCA 90 bp TATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGGACAGGCTaGAATGTCAAGACTCTGCAAGGTCAGCTCACTAGAGTTCCTCTT +
Preference number: 1 (lower is better)
Translates to: YFPRQNAESASQRTG*NVKTLQGQLTRVPL
Trigger: AAGAGGAACTCTAGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CCA 90 bp CCTGGCTTGCAGTCACCAGAATGCCAGGTCTATACAAAGTGTGAATaGGCCAAGCTGCTTTGCAAACTGTCACCCATGAAGAATGTTTTC +
Preference number: 1 (lower is better)
Translates to: PGLQSPECQVYTKCE*AKLLCKLSPMKNVF
Trigger: GAAAACATTCTTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTCTGGTGACTGCAAGCCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR GCA 90 bp CAGTGTTATCTTCTCTGTTTTTCCCCTGGCTTGCAGTCACCAGAATaGCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAA +
Preference number: 1 (lower is better)
Translates to: QCYLLCFSPGLQSPE*QVYTKCEWAKLLCK
Trigger: TTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTCTGGTGACTGCAAGCCAGGGGAAAAACAGAGAAGATAACACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR TCA 90 bp TCAACAGCAAACTTAAAGGAAAAAGGAGCTGGTACCCCAATGTCCTaGCCTGGAGTCAAGATTTGGCATCTTAGGGCTCCTGATTTCTTT +
Preference number: 1 (lower is better)
Translates to: STANLKEKGAGTPMS*PGVKIWHLRAPDFF
Trigger: AAAGAAATCAGGAGCCCTAAGATGCCAAATCTTGACTCCAGGTCAGGACATTGGGGTACCAGCTCCTTTTTCCTTTAAGTTTGCTGTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR GCA 90 bp CCAGAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTaGAAACTGTCACCCATGAAGAATGTTTTCTTGGCTAAGCAAAAG +
Preference number: 1 (lower is better)
Translates to: PECQVYTKCEWAKLL*KLSPMKNVFLAKQK
Trigger: CTTTTGCTTAGCCAAGAAAACATTCTTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR TCA 90 bp ATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACCCATaGAGAATGTTTTCTTGGCTAAGCAAAAGAAAGAGCACTGAGCCT +
Preference number: 1 (lower is better)
Translates to: IQSVNGPSCFANCHP*RMFSWLSKRKSTEP
Trigger: AGGCTCAGTGCTCTTTCTTTTGCTTAGCCAAGAAAACATTCTTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATaGTGGTGGTATCGTTCAAGAGTTTTTCTTCAATCAACAGCAAAC +
Preference number: 1 (lower is better)
Translates to: LMATIRRGFQIGLEL*WWYRSRVFLQSTAN
Trigger: GTTTGCTGTTGATTGAAGAAAAACTCTTGAACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCCCCAGGCAAAATGCTaGGTCGGCTTCCCAAAGGAC +
Preference number: 2 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSPQAKC*VGFPKD
Trigger: GTCCTTTGGGAAGCCGACTCAGCATTTTGCCTGGGG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCCCCAGGCAAAATGCTaGGTCGGCTTCCCAAAGGAC +
Preference number: 2 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIPQAKC*VGFPKD
Trigger: GTCCTTTGGGAAGCCGACTCAGCATTTTGCCTGGGG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCAAAAGAAAGAGCACTaGGCCTCATGGCAACAATTA +
Preference number: 2 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSQKKEH*ASWQQL
Trigger: TAATTGTTGCCATGAGGCTCAGTGCTCTTTCTTTTG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGCAAACTGTCACCCATaGAGAATGTTTTCTTGGCTA +
Preference number: 2 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSANCHP*RMFSWL
Trigger: TAGCCAAGAAAACATTCTTCATGGGTGACAGTTTGC...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGGAATGTCAAGACTCTaGAAGGTCAGCTCACTAGAG +
Preference number: 2 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKGMSRL*KVSSLE
Trigger: CTCTAGTGAGCTGACCTTGCAGAGTCTTGACATTCC...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTTGCATAGTTTTCACATaGATCCAACAGCAAACCCAG +
Preference number: 2 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSCIVFT*IQQQTQ
Trigger: CTGGGTTTGCTGTTGGATGCATGTGAAAACTATGCA...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTTTCCTCTTGGTGCTATaGACTTCAAGAAACCAAACG +
Preference number: 2 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSFLLVL*TSRNQT
Trigger: CGTTTGGTTTCTTGAAGTCCATAGCACCAAGAGGAA...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTGGAATGTCAAGACTCTaGAAGGTCAGCTCACTAGAG +
Preference number: 2 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIGMSRL*KVSSLE
Trigger: CTCTAGTGAGCTGACCTTGCAGAGTCTTGACATTCC...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCCCAATGTCCTGACCTaGAGTCAAGATTTGGCATCT +
Preference number: 2 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIPNVLT*SQDLAS
Trigger: AGATGCCAAATCTTGACTCCAGGTCAGGACATTGGG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGGAGATAATCCCGGGGTaGGAGGGGCCAGATCCACTG +
Preference number: 2 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQEIIPG*EGPDPL
Trigger: CAGTGGATCTGGCCCCTCCCACCCCGGGATTATCTC...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAATTCCTCTTGGTGCTATaGACTTCAAGAAACCAAACG +
Preference number: 2 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKFLLVL*TSRNQT
Trigger: CGTTTGGTTTCTTGAAGTCCATAGCACCAAGAGGAA...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGTTCCTCTTGGTGCTATaGACTTCAAGAAACCAAACG +
Preference number: 2 (lower is better)
Translates to: AESASQRTGWNVKTLQGQFLLVL*TSRNQT
Trigger: CGTTTGGTTTCTTGAAGTCCATAGCACCAAGAGGAA...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAATCACATTCCTTATCATaGGAAGTGAATTCACGAGGA +
Preference number: 2 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKSHSLS*EVNSRG
Trigger: TCCTCGTGAATTCACTTCTCATGATAAGGAATGTGA...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGTGAGATGGATGTCATaGCTTCACCTTGGGTGGCCG +
Preference number: 2 (lower is better)
Translates to: SELPPADVSLGKFHSCIVVRWMS*LHLGWP
Trigger: CGGCCACCCAAGGTGAAGGCATGACATCCATCTCAC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAATTTTTGGTTCATCTGTaGAAATCTCAGAACTGTGGT +
Preference number: 2 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKFLVHL*KSQNCG
Trigger: ACCACAGTTCTGAGATTTTCACAGATGAACCAAAAA...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCCCCAGGCAAAATGCTaGGTCGGCTTCCCAAAGGAC +
Preference number: 2 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCPQAKC*VGFPKD
Trigger: GTCCTTTGGGAAGCCGACTCAGCATTTTGCCTGGGG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTGTGAGATGGATGTCATaGCTTCACCTTGGGTGGCCG +
Preference number: 2 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCVRWMS*LHLGWP
Trigger: CGGCCACCCAAGGTGAAGGCATGACATCCATCTCAC...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTAGGAGCTGCTTCCCCTaGAAAGTGGGAAGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCRSCFP*KVGSSE
Trigger: CTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCT...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGTTCCTCTTGGTGCTATaGACTTCAAGAAACCAAACG +
Preference number: 2 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWFLLVL*TSRNQT
Trigger: CGTTTGGTTTCTTGAAGTCCATAGCACCAAGAGGAA...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTGGAAGCTCTGAGCACTaGAGTGAACTGCCACCAGCT +
Preference number: 2 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCGSSEH*SELPPA
Trigger: AGCTGGTGGCAGTTCACTCCAGTGCTCAGAGCTTCC...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGTGGGCCAAGCTGCTTTaGAAACTGTCACCCATGAAG +
Preference number: 2 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQWAKLL*KLSPMK
Trigger: CTTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCA...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTTGGGCCAAGCTGCTTTaGAAACTGTCACCCATGAAG +
Preference number: 2 (lower is better)
Translates to: SELPPADVSLGKFHSCIVWAKLL*KLSPMK
Trigger: CTTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCA...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCAGGAGCTGCTTCCCCTaGAAAGTGGGAAGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCRSCFP*KVGSSE
Trigger: CTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCT...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACCCAATGTCCTGACCTaGAGTCAAGATTTGGCATCT +
Preference number: 2 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSPNVLT*SQDLAS
Trigger: AGATGCCAAATCTTGACTCCAGGTCAGGACATTGGG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCAAAAGGAAAAAGGAGCTaGTACCCCAATGTCCTGACC +
Preference number: 2 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSKGKRS*YPNVLT
Trigger: GGTCAGGACATTGGGGTACCAGCTCCTTTTTCCTTT...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CAA 90 bp GCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTAGAGTTCCTCTaGGTGCTATGGACTTCAAGAAACCAAACGTTCACATTCCTTATC +
Preference number: 2 (lower is better)
Translates to: AGMSRLCKVSSLEFL*VLWTSRNQTFTFLI
Trigger: GATAAGGAATGTGAACGTTTGGTTTCTTGAAGTCCATAGCACCAAGAGGAACTCTAGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CAA 90 bp CTTCTAAATAGCACTCAGTGTTATCTTCTCTGTTTTTCCCCTGGCTaGCAGTCACCAGAATGCCAGGTCTATACAAAGTGTGAATGGGCC +
Preference number: 2 (lower is better)
Translates to: LLNSTQCYLLCFSPG*QSPECQVYTKCEWA
Trigger: GGCCCATTCACACTTTGTATAGACCTGGCATTCTGGTGACTGCAAGCCAGGGGAAAAACAGAGAAGATAACACTGAGTGCTATTTAGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTGGGCCAAGCTGCTTTaGAAACTGTCACCCATGAAG +
Preference number: 2 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCWAKLL*KLSPMK
Trigger: CTTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCA...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTCCCAATGTCCTGACCTaGAGTCAAGATTTGGCATCT +
Preference number: 2 (lower is better)
Translates to: SELPPADVSLGKFHSCIVPNVLT*SQDLAS
Trigger: AGATGCCAAATCTTGACTCCAGGTCAGGACATTGGG...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCCCAATGTCCTGACCTaGAGTCAAGATTTGGCATCT +
Preference number: 2 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQPNVLT*SQDLAS
Trigger: AGATGCCAAATCTTGACTCCAGGTCAGGACATTGGG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGTCTCTGTTTTTCCCCTaGCTTGCAGTCACCAGAATG +
Preference number: 2 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQSLFFP*LAVTRM
Trigger: CATTCTGGTGACTGCAAGCCAGGGGAAAAACAGAGA...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACAAAAGAAAGAGCACTaGGCCTCATGGCAACAATTA +
Preference number: 2 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSQKKEH*ASWQQL
Trigger: TAATTGTTGCCATGAGGCTCAGTGCTCTTTCTTTTG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCTGGGCCAAGCTGCTTTaGAAACTGTCACCCATGAAG +
Preference number: 2 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCWAKLL*KLSPMK
Trigger: CTTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCA...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTAAAGGAAAAAGGAGCTaGTACCCCAATGTCCTGACC +
Preference number: 2 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCKGKRS*YPNVLT
Trigger: GGTCAGGACATTGGGGTACCAGCTCCTTTTTCCTTT...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAGGAAGCTCTGAGCACTaGAGTGAACTGCCACCAGCT +
Preference number: 2 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRGSSEH*SELPPA
Trigger: AGCTGGTGGCAGTTCACTCCAGTGCTCAGAGCTTCC...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGGGAATGTCAAGACTCTaGAAGGTCAGCTCACTAGAG +
Preference number: 2 (lower is better)
Translates to: LMATIRRGFQIGLELWWWGMSRL*KVSSLE
Trigger: CTCTAGTGAGCTGACCTTGCAGAGTCTTGACATTCC...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGTGCATAGTTTTCACATaGATCCAACAGCAAACCCAG +
Preference number: 2 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQCIVFT*IQQQTQ
Trigger: CTGGGTTTGCTGTTGGATGCATGTGAAAACTATGCA...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCATTTTTGGTTCATCTGTaGAAATCTCAGAACTGTGGT +
Preference number: 2 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSFLVHL*KSQNCG
Trigger: ACCACAGTTCTGAGATTTTCACAGATGAACCAAAAA...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTTCCCAAAGGACAGGCTaGAATGTCAAGACTCTGCAA +
Preference number: 2 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRSQRTG*NVKTLQ
Trigger: TTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGA...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTCCCAATGTCCTGACCTaGAGTCAAGATTTGGCATCT +
Preference number: 2 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRPNVLT*SQDLAS
Trigger: AGATGCCAAATCTTGACTCCAGGTCAGGACATTGGG...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTAAAGGAAAAAGGAGCTaGTACCCCAATGTCCTGACC +
Preference number: 2 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRKGKRS*YPNVLT
Trigger: GGTCAGGACATTGGGGTACCAGCTCCTTTTTCCTTT...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGTATACAAAGTGTGAATaGGCCAAGCTGCTTTGCAAA +
Preference number: 2 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQYTKCE*AKLLCK
Trigger: TTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATA...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACATCTCTGTTTTTCCCCTaGCTTGCAGTCACCAGAATG +
Preference number: 2 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTSLFFP*LAVTRM
Trigger: CATTCTGGTGACTGCAAGCCAGGGGAAAAACAGAGA...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGATCTCAAAATGTATGTaGCAGCCACATAATATCCTC +
Preference number: 2 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQISKCM*QPHNIL
Trigger: GAGGATATTATGTGGCTGTCACATACATTTTGAGAT...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGATTTCTTTATCATGTaGTTGGGTTATAGCTCATCC +
Preference number: 2 (lower is better)
Translates to: SELPPADVSLGKFHSCIVDFFIM*LGYSSS
Trigger: GGATGAGCTATAACCCAAGCACATGATAAAGAAATC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATCTCTGTTTTTCCCCTaGCTTGCAGTCACCAGAATG +
Preference number: 2 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRSLFFP*LAVTRM
Trigger: CATTCTGGTGACTGCAAGCCAGGGGAAAAACAGAGA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCATCTTTTTGACCACCTaGTTTGTGAATGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCIFLTT*FVNVCV
Trigger: CACACACACATTCACAAAGCAGGTGGTCAAAAAGAT...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCAGGACAAGCACATACTaGGTCAGACATCATTGTATA +
Preference number: 2 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCRTSTY*VRHHCI
Trigger: TATACAATGATGTCTGACCCAGTATGTGCTTGTCCT...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCTTTTTGGTTCATCTGTaGAAATCTCAGAACTGTGGT +
Preference number: 2 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCFLVHL*KSQNCG
Trigger: ACCACAGTTCTGAGATTTTCACAGATGAACCAAAAA...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTTTTTGGTTCATCTGTaGAAATCTCAGAACTGTGGT +
Preference number: 2 (lower is better)
Translates to: LMATIRRGFQIGLELWWWFLVHL*KSQNCG
Trigger: ACCACAGTTCTGAGATTTTCACAGATGAACCAAAAA...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAGCAAACTGTCACCCATaGAGAATGTTTTCTTGGCTA +
Preference number: 2 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRANCHP*RMFSWL
Trigger: TAGCCAAGAAAACATTCTTCATGGGTGACAGTTTGC...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR TCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCATGGTATTTAAACCGTaGACGTTAATGACCTATGCA +
Preference number: 2 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCMVFKP*TLMTYA
Trigger: TGCATAGGTCATTAACGTTCACGGTTTAAATACCAT...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGGATTTCTTTATCATGTaGTTGGGTTATAGCTCATCC +
Preference number: 2 (lower is better)
Translates to: LSLMATIRRGFQIGLELWDFFIM*LGYSSS
Trigger: GGATGAGCTATAACCCAAGCACATGATAAAGAAATC...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR GCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGGATTTCTTTATCATGTaGTTGGGTTATAGCTCATCC +
Preference number: 2 (lower is better)
Translates to: LMATIRRGFQIGLELWWWDFFIM*LGYSSS
Trigger: GGATGAGCTATAACCCAAGCACATGATAAAGAAATC...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACATATACAAAGTGTGAATaGGCCAAGCTGCTTTGCAAA +
Preference number: 2 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTYTKCE*AKLLCK
Trigger: TTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATA...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTATGGGCCAAGCTGCTTaGCAAACTGTCACCCATGAA +
Preference number: 3 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSMGQAA*QTVTHE
Trigger: TTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCAT...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR GCA 72 bp CGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTaGAAGGTCAGCTCACTAGAGTTCCTCTTGGTGCTA +
Preference number: 3 (lower is better)
Translates to: RLPKGQAGMSRL*KVSSLEFLLVL
Trigger: TAGCACCAAGAGGAACTCTAGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR GCA 72 bp CCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGAACTaGCACCAGCTGATGTCAGTCTGGGAAAGTTTCATT +
Preference number: 3 (lower is better)
Translates to: PAKWEALSTGVN*HQLMSVWESFI
Trigger: AATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACTCCAGTGCTCAGAGCTTCCCACTTTGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CCA 72 bp AGGCAAAATGCTGAGTCGGCTTCCCAAAGGACAGGCTaGAATGTCAAGACTCTGCAAGGTCAGCTCACTAGA +
Preference number: 3 (lower is better)
Translates to: RQNAESASQRTG*NVKTLQGQLTR
Trigger: TCTAGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGCATTTTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR GCA 72 bp CTTCTCTGTTTTTCCCCTGGCTTGCAGTCACCAGAATaGCAGGTCTATACAAAGTGTGAATGGGCCAAGCTG +
Preference number: 3 (lower is better)
Translates to: LLCFSPGLQSPE*QVYTKCEWAKL
Trigger: CAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTCTGGTGACTGCAAGCCAGGGGAAAAACAGAGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR TCA 72 bp CTTGCAGTCACCAGAATGCCAGGTCTATACAAAGTGTaGATGGGCCAAGCTGCTTTGCAAACTGTCACCCAT +
Preference number: 3 (lower is better)
Translates to: LAVTRMPGLYKV*MGQAALQTVTH
Trigger: ATGGGTGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTCTGGTGACTGCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CCA 72 bp CAGTCACCAGAATGCCAGGTCTATACAAAGTGTGAATaGGCCAAGCTGCTTTGCAAACTGTCACCCATGAAG +
Preference number: 3 (lower is better)
Translates to: QSPECQVYTKCE*AKLLCKLSPMK
Trigger: CTTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTCTGGTGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGTTCTTTATCATGTGCTaGGGTTATAGCTCATCCAGG +
Preference number: 3 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWFFIMC*GYSSSR
Trigger: CCTGGATGAGCTATAACCCAAGCACATGATAAAGAA...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTGGATTTCAAATAGGTTaGGAATTATGGTGGTGGTAT +
Preference number: 3 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIGFQIG*ELWWWY
Trigger: ATACCACCACCATAATTCCAAACCTATTTGAAATCC...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTATGGGCCAAGCTGCTTaGCAAACTGTCACCCATGAA +
Preference number: 3 (lower is better)
Translates to: SELPPADVSLGKFHSCIVMGQAA*QTVTHE
Trigger: TTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCAT...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR GCA 72 bp GCACTCAGTGTTATCTTCTCTGTTTTTCCCCTGGCTTaGAGTCACCAGAATGCCAGGTCTATACAAAGTGTG +
Preference number: 3 (lower is better)
Translates to: ALSVIFSVFPLA*SHQNARSIQSV
Trigger: CACACTTTGTATAGACCTGGCATTCTGGTGACTGCAAGCCAGGGGAAAAACAGAGAAGATAACACTGAGTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACATGTTTTTCCCCTGGCTaGCAGTCACCAGAATGCCAG +
Preference number: 3 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTCFSPG*QSPECQ
Trigger: CTGGCATTCTGGTGACTGCAAGCCAGGGGAAAAACA...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR TCA 72 bp GTGAATGGGCCAAGCTGCTTTGCAAACTGTCACCCATaGAGAATGTTTTCTTGGCTAAGCAAAAGAAAGAGC +
Preference number: 3 (lower is better)
Translates to: VNGPSCFANCHP*RMFSWLSKRKS
Trigger: GCTCTTTCTTTTGCTTAGCCAAGAAAACATTCTTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCATTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR GCA 72 bp CAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTaGAAACTGTCACCCATGAAGAATGTTTTCTTGGCT +
Preference number: 3 (lower is better)
Translates to: QVYTKCEWAKLL*KLSPMKNVFLA
Trigger: AGCCAAGAAAACATTCTTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CCA 72 bp GATGGTGGATCTGGCCAACAACAAACTGTCACAACCTaGTATTTAAAAGGAACACAGAACCTATTGGTCTGC +
Preference number: 3 (lower is better)
Translates to: DGGSGQQQTVTT*YLKGTQNLLVC
Trigger: GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATGTTTTTCCCCTGGCTaGCAGTCACCAGAATGCCAG +
Preference number: 3 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRCFSPG*QSPECQ
Trigger: CTGGCATTCTGGTGACTGCAAGCCAGGGGAAAAACA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR GCA 72 bp ATTTGGCATCTTAGGGCTCCTGATTTCTTTATCATGTaGTTGGGTTATAGCTCATCCAGGAAAAGAAAGGGG +
Preference number: 3 (lower is better)
Translates to: IWHLRAPDFFIM*LGYSSSRKRKG
Trigger: CCCCTTTCTTTTCCTGGATGAGCTATAACCCAAGCACATGATAAAGAAATCAGGAGCCCTAAGATGCCAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CCA 72 bp TCTTCAATCAACAGCAAACTTAAAGGAAAAAGGAGCTaGTACCCCAATGTCCTGACCTGGAGTCAAGATTTG +
Preference number: 3 (lower is better)
Translates to: SSINSKLKGKRS*YPNVLTWSQDL
Trigger: CAAATCTTGACTCCAGGTCAGGACATTGGGGTACCAGCTCCTTTTTCCTTTAAGTTTGCTGTTGATTGAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAATGGGCCAAGCTGCTTaGCAAACTGTCACCCATGAA +
Preference number: 3 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRMGQAA*QTVTHE
Trigger: TTCATGGGTGACAGTTTGCAAAGCAGCTTGGCCCAT...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCTTCTTTATCATGTGCTaGGGTTATAGCTCATCCAGG +
Preference number: 3 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCFFIMC*GYSSSR
Trigger: CCTGGATGAGCTATAACCCAAGCACATGATAAAGAA...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTTCTTTATCATGTGCTaGGGTTATAGCTCATCCAGG +
Preference number: 3 (lower is better)
Translates to: LSLMATIRRGFQIGLELWFFIMC*GYSSSR
Trigger: CCTGGATGAGCTATAACCCAAGCACATGATAAAGAA...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAGCATGATAATCTTTTaGACCACCTGCTTTGTGAAT +
Preference number: 3 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQSMIIF*TTCFVN
Trigger: ATTCACAAAGCAGGTGGTCAAAAAGATTATCATGCT...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTTTCTTTATCATGTGCTaGGGTTATAGCTCATCCAGG +
Preference number: 3 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRFFIMC*GYSSSR
Trigger: CCTGGATGAGCTATAACCCAAGCACATGATAAAGAA...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTAGCATGATAATCTTTTaGACCACCTGCTTTGTGAAT +
Preference number: 3 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCSMIIF*TTCFVN
Trigger: ATTCACAAAGCAGGTGGTCAAAAAGATTATCATGCT...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CCA 72 bp AGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTaGTATCGTTCAAGAGTTTTTCTTCAATCAACAGCA +
Preference number: 3 (lower is better)
Translates to: RRGFQIGLELWW*YRSRVFLQSTA
Trigger: TGCTGTTGATTGAAGAAAAACTCTTGAACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR-3UTR CAA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAAGCATGATAATCTTTTaGACCACCTGCTTTGTGAAT +
Preference number: 3 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRSMIIF*TTCFVN
Trigger: ATTCACAAAGCAGGTGGTCAAAAAGATTATCATGCT...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CCA 72 bp ATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTaGTGGTATCGTTCAAGAGTTTTTCTTCAATCAACA +
Preference number: 3 (lower is better)
Translates to: IRRGFQIGLELW*WYRSRVFLQST
Trigger: TGTTGATTGAAGAAAAACTCTTGAACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTAGCACCAACCAGGATTaGCGACGCGGCCCGTCCATC +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSSTNQD*RRGPSI
Trigger: GATGGACGGGCCGCGTCGTCAATCCTGGTTGGTGCT...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCCAGAGTCTGGGGCTTaGTCTGATGGGTGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSPESGA*SDGWGC
Trigger: GCACCCCCACCCATCAGAGCAAGCCCCAGACTCTGG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGGGCCAACTGCACTCTaGGACCCGGCTGTGGAACTT +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSGPTAL*DPAVEL
Trigger: AAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGGCCC...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCCAGCCTGTCCTGCCTaGGCAGGACCTGTGGCACCT +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQPACPA*AGPVAP
Trigger: AGGTGCCACAGGTCCTGCTCAGGCAGGACAGGCTGG...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGGCGCAGCTGGCTCCTaGTGCTTTTTGCCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSGAAGS*CFLPGF
Trigger: GAAGCCAGGCAAAAAGCAGCAGGAGCCAGCTGCGCC...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACAGCACCAACCAGGATTaGCGACGCGGCCCGTCCATC +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHSTNQD*RRGPSI
Trigger: GATGGACGGGCCGCGTCGTCAATCCTGGTTGGTGCT...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAAGATCGGCTGGAGCCTaGCCCCCTAAGGCCAGAGTG +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKRSAGA*PPKARV
Trigger: CACTCTGGCCTTAGGGGGTCAGGCTCCAGCCGATCT...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGACTGCTCACTTTCCTaGTTCACCAGGGCAGCGTGG +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSDCSLS*FTRAAW
Trigger: CCACGCTGCCCTGGTGAATCAGGAAAGTGAGCAGTC...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGTCTGGGGCTTGCTCTaGTGGGTGGGGGTGCCATGT +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQVWGLL*WVGVPC
Trigger: ACATGGCACCCCCACCCATCAGAGCAAGCCCCAGAC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGTCTGGGGCTTGCTCTaGTGGGTGGGGGTGCCATGT +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKVWGLL*WVGVPC
Trigger: ACATGGCACCCCCACCCATCAGAGCAAGCCCCAGAC...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAATACCCCAGCCTGTCCTaGCTGAGCAGGACCTGTGGC +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKYPSLS*LSRTCG
Trigger: GCCACAGGTCCTGCTCAGGCAGGACAGGCTGGGGTA...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGGGCTTCTCGTGGGCTaGAGAAAGGGGTCGCTAGAA +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSGLLVG*RKGSLE
Trigger: TTCTAGCGACCCCTTTCTGCAGCCCACGAGAAGCCC...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTTCTGATGGGTGGGGGTaGCATGTGATGAGCCTGTCG +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSSDGWG*HVMSLS
Trigger: CGACAGGCTCATCACATGGCACCCCCACCCATCAGA...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAACCAGAGTCTGGGGCTTaGTCTGATGGGTGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKPESGA*SDGWGC
Trigger: GCACCCCCACCCATCAGAGCAAGCCCCAGACTCTGG...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGGCCTCCCCCATAGCTaGGCTCCATGTCTGGAGACG +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQGLPHS*APCLET
Trigger: CGTCTCCAGACATGGAGCCCAGCTATGGGGGAGGCC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038207.12
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCCCTCTGCATTGCCATaGGGGCTGGAGAGAGTCAGT +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSPSALP*GLERVS
Trigger: ACTGACTCTCTCCAGCCCCCATGGCAATGCAGAGGG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGGGAGGAGGCGCAGCTaGCTCCTGCTGCTTTTTGCC +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQGRRRS*LLLLFA
Trigger: GGCAAAAAGCAGCAGGAGCCAGCTGCGCCTCCTCCC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCCTGAGCAGGACCTGTaGCACCTACACCCCCAAACA +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSPEQDL*HLHPQT
Trigger: TGTTTGGGGGTGTAGGTGCCACAGGTCCTGCTCAGG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACGGGCCAACTGCACTCTaGGACCCGGCTGTGGAACTT +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHGPTAL*DPAVEL
Trigger: AAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGGCCC...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTAGATCGGCTGGAGCCTaGCCCCCTAAGGCCAGAGTG +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIRSAGA*PPKARV
Trigger: CACTCTGGCCTTAGGGGGTCAGGCTCCAGCCGATCT...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTTGGTCACCTTCGCCTaGAGCCGGCTCCCGATGGTT +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHLVTFA*SRLPMV
Trigger: AACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCAA...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTTATCACCCTCTGCATTaGCATGGGGGCTGGAGAGAG +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSYHPLH*HGGWRE
Trigger: CTCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATA...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGGCGCAGCTGGCTCCTaGTGCTTTTTGCCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQGAAGS*CFLPGF
Trigger: GAAGCCAGGCAAAAAGCAGCAGGAGCCAGCTGCGCC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGCGCGGTGTGGACTGTaGAGACACAGGTCCACTAGG +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQARCGL*RHRSTR
Trigger: CCTAGTGGACCTGTGTCTGCACAGTCCACACCGCGC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCCAGAGTCTGGGGCTTaGTCTGATGGGTGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIPESGA*SDGWGC
Trigger: GCACCCCCACCCATCAGAGCAAGCCCCAGACTCTGG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTTCACCAGGGCAGCGTaGTCCTCCTCACAGCGTGAC +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHFTRAA*SSSQRD
Trigger: GTCACGCTGTGAGGAGGACCACGCTGCCCTGGTGAA...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGGAGGTCCACTTCCTCTaGGGGAGGAGGCGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWEVHFL*GRRRSW
Trigger: CCAGCTGCGCCTCCTCCCCCAGAGGAAGTGGACCTC...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCAACAAATCCTGACCTaGTGGCTTAGCAGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSQQILT*WLSRGS
Trigger: GGAGCCCCTGCTAAGCCACCAGGTCAGGATTTGTTG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTTCCACCCAATCCAGTTaGGGTGGTAGGTTTGCTGGC +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSSTQSS*GGRFAG
Trigger: GCCAGCAAACCTACCACCCCAACTGGATTGGGTGGA...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTGGGCCAACTGCACTCTaGGACCCGGCTGTGGAACTT +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTGPTAL*DPAVEL
Trigger: AAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGGCCC...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTGGGCCAACTGCACTCTaGGACCCGGCTGTGGAACTT +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIGPTAL*DPAVEL
Trigger: AAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGGCCC...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGTACCCCAGCCTGTCCTaGCTGAGCAGGACCTGTGGC +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWYPSLS*LSRTCG
Trigger: GCCACAGGTCCTGCTCAGGCAGGACAGGCTGGGGTA...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTGCGCGGTGTGGACTGTaGAGACACAGGTCCACTAGG +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIARCGL*RHRSTR
Trigger: CCTAGTGGACCTGTGTCTGCACAGTCCACACCGCGC...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACGGGCTTCTCGTGGGCTaGAGAAAGGGGTCGCTAGAA +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHGLLVG*RKGSLE
Trigger: TTCTAGCGACCCCTTTCTGCAGCCCACGAGAAGCCC...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGTCTGATGGGTGGGGGTaGCATGTGATGAGCCTGTCG +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQSDGWG*HVMSLS
Trigger: CGACAGGCTCATCACATGGCACCCCCACCCATCAGA...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGACGTTCGCTCTGCCCTaGAGGCATAGCCGAGAAGCT +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQTFALP*RHSREA
Trigger: AGCTTCTCGGCTATGCCTGCAGGGCAGAGCGAACGT...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAACGTTCGCTCTGCCCTaGAGGCATAGCCGAGAAGCT +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKTFALP*RHSREA
Trigger: AGCTTCTCGGCTATGCCTGCAGGGCAGAGCGAACGT...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGTTGCCTTGTCAGGGTaGACCACTAGCACAGCCCTC +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKVALSG*TTSTAL
Trigger: GAGGGCTGTGCTAGTGGTGCACCCTGACAAGGCAAC...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTTTCACCAGGGCAGCGTaGTCCTCCTCACAGCGTGAC +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTFTRAA*SSSQRD
Trigger: GTCACGCTGTGAGGAGGACCACGCTGCCCTGGTGAA...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACCCCTCTGCATTGCCATaGGGGCTGGAGAGAGTCAGT +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHPSALP*GLERVS
Trigger: ACTGACTCTCTCCAGCCCCCATGGCAATGCAGAGGG...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGGGGAGGAGGCGCAGCTaGCTCCTGCTGCTTTTTGCC +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWGRRRS*LLLLFA
Trigger: GGCAAAAAGCAGCAGGAGCCAGCTGCGCCTCCTCCC...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGCAACTCAGAATTGCTaGGAGGAGCTGCCAAGGAAG +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSATQNC*EELPRK
Trigger: CTTCCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGC...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAACCTCCACCCATTGGCTaGGGGGATGCTTTCTGTGGT +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKPPPIG*GDAFCG
Trigger: ACCACAGAAAGCATCCCCCCAGCCAATGGGTGGAGG...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACCCACGGGTTTCCATTTaGTCTCCCCAGCCCACAGCA +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHPRVSI*SPQPTA
Trigger: TGCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGG...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCCACGGGTTTCCATTTaGTCTCCCCAGCCCACAGCA +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQPRVSI*SPQPTA
Trigger: TGCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGG...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGTGTCCTTCAGGTTACTaGATAGCCTCCCTGCACCGC +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQCPSGY*IASLHR
Trigger: GCGGTGCAGGGAGGCTATTCAGTAACCTGAAGGACA...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGGCTTCTTGGCTCCATaGGGCTTATCACCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQGFLAP*GLSPSA
Trigger: TGCAGAGGGTGATAAGCCTCATGGAGCCAAGAAGCC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAATGTAGACTTGGAGCCTaGCTGATGGGCCAACTGCAC +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKCRLGA*LMGQLH
Trigger: GTGCAGTTGGCCCATCAGGCAGGCTCCAAGTCTACA...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGCAGCTGGCTCCTGCTaGTTTTTGCCTGGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKAAGSC*FLPGFL
Trigger: CAAGAAGCCAGGCAAAAAGCAGCAGGAGCCAGCTGC...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTTCTGATGGGTGGGGGTaGCATGTGATGAGCCTGTCG +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPISDGWG*HVMSLS
Trigger: CGACAGGCTCATCACATGGCACCCCCACCCATCAGA...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTACGTTCGCTCTGCCCTaGAGGCATAGCCGAGAAGCT +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTTFALP*RHSREA
Trigger: AGCTTCTCGGCTATGCCTGCAGGGCAGAGCGAACGT...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGCCCACAGCACGGTGTaGATTGTGGAAAGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKAHSTV*IVESRA
Trigger: AGCTCTGCTTTCCACAATGCACACCGTGCTGTGGGC...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTGTTGCCTTGTCAGGGTaGACCACTAGCACAGCCCTC +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTVALSG*TTSTAL
Trigger: GAGGGCTGTGCTAGTGGTGCACCCTGACAAGGCAAC...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGGCAGCCGGCTCCCGATaGTTGACCGCAAGTGGTACA +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWAAGSR*LTASGT
Trigger: TGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGC...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTAGCTGTCCGTGGTGCTaGCGCGGTGCGGAGGCTGCC +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVSCPWC*RGAEAA
Trigger: GGCAGCCTCCGCACCGCGCCAGCACCACGGACAGCT...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACCAGCCTGTCCTGCCTaGGCAGGACCTGTGGCACCT +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSPACPA*AGPVAP
Trigger: AGGTGCCACAGGTCCTGCTCAGGCAGGACAGGCTGG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGGATGCTTTCTGTGGTaGGCTGAGAGGTGGAAATCC +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQGCFLW*AERWKS
Trigger: GGATTTCCACCTCTCAGCTCACCACAGAAAGCATCC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGCAAAGAAGCCTCCTTaGCCAAGATTCCTGGGATGG +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQAKKPP*PRFLGW
Trigger: CCATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGCAAAGAAGCCTCCTTaGCCAAGATTCCTGGGATGG +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKAKKPP*PRFLGW
Trigger: CCATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGC...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTTATCACCCTCTGCATTaGCATGGGGGCTGGAGAGAG +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIYHPLH*HGGWRE
Trigger: CTCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATA...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGTCAGCAACTCAGAATTaGTGGGAGGAGCTGCCAAGG +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQSATQN*WEELPR
Trigger: CCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGA...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAATCAGCAACTCAGAATTaGTGGGAGGAGCTGCCAAGG +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKSATQN*WEELPR
Trigger: CCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGA...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGGTTGCCTTGTCAGGGTaGACCACTAGCACAGCCCTC +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWVALSG*TTSTAL
Trigger: GAGGGCTGTGCTAGTGGTGCACCCTGACAAGGCAAC...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGTGCCTTGATCGTGAGTaGCTTGAAGTGAGGGCGGTA +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQCLDRE*LEVRAV
Trigger: TACCGCCCTCACTTCAAGCCACTCACGATCAAGGCA...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTACGATGACATCACCTTaGACTGTGATGTTCAGAGGG +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSTMTSP*TVMFRG
Trigger: CCCTCTGAACATCACAGTCCAAGGTGATGTCATCGT...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGCCCTCTGCATTGCCATaGGGGCTGGAGAGAGTCAGT +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWPSALP*GLERVS
Trigger: ACTGACTCTCTCCAGCCCCCATGGCAATGCAGAGGG...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTGCTGCTTTTTGCCTaGCTTCTTGGCTCCATGAGG +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQLLLFA*LLGSMR
Trigger: CCTCATGGAGCCAAGAAGCCAGGCAAAAAGCAGCAG...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACGCAACTCAGAATTGCTaGGAGGAGCTGCCAAGGAAG +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHATQNC*EELPRK
Trigger: CTTCCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGC...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGCAACTCAGAATTGCTaGGAGGAGCTGCCAAGGAAG +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKATQNC*EELPRK
Trigger: CTTCCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGC...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCAAAAGGGTCAAAGGTaGCACCTTCTCCCACTCTTA +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSQKGQR*HLLPLL
Trigger: TAAGAGTGGGAGAAGGTGCCACCTTTGACCCTTTTG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCAAATCCTGACCTGGTaGCTTAGCAGGGGCTCCAAA +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQQILTW*LSRGSK
Trigger: TTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATTTG...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCAACAAATCCTGACCTaGTGGCTTAGCAGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTQQILT*WLSRGS
Trigger: GGAGCCCCTGCTAAGCCACCAGGTCAGGATTTGTTG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCCAGCAATGTCGGGCTaGATGTTCACAGCAGGAGTA +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQPAMSG*MFTAGV
Trigger: TACTCCTGCTGTGAACATCCAGCCCGACATTGCTGG...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGCCACGGGTTTCCATTTaGTCTCCCCAGCCCACAGCA +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWPRVSI*SPQPTA
Trigger: TGCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGG...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGTGTCCTTCAGGTTACTaGATAGCCTCCCTGCACCGC +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWCPSGY*IASLHR
Trigger: GCGGTGCAGGGAGGCTATTCAGTAACCTGAAGGACA...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCCAGCCTGTCCTGCCTaGGCAGGACCTGTGGCACCT +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQPACPA*AGPVAP
Trigger: AGGTGCCACAGGTCCTGCTCAGGCAGGACAGGCTGG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCAGTCTGGGGCTTGCTCTaGTGGGTGGGGGTGCCATGT +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSVWGLL*WVGVPC
Trigger: ACATGGCACCCCCACCCATCAGAGCAAGCCCCAGAC...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCTTTCTGTGGTGAGCTaGGAGGTGGAAATCCTCCAC +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTLSVVS*EVEILH
Trigger: GTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCTTTCTGTGGTGAGCTaGGAGGTGGAAATCCTCCAC +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPILSVVS*EVEILH
Trigger: GTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTGGATGCTTTCTGTGGTaGGCTGAGAGGTGGAAATCC +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTGCFLW*AERWKS
Trigger: GGATTTCCACCTCTCAGCTCACCACAGAAAGCATCC...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTGGATGCTTTCTGTGGTaGGCTGAGAGGTGGAAATCC +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIGCFLW*AERWKS
Trigger: GGATTTCCACCTCTCAGCTCACCACAGAAAGCATCC...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCAGCGCTCGAGTCCCCGTaGCTGTCCACCAGCTGCAAA +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSALESP*LSTSCK
Trigger: TTTGCAGCTGGTGGACAGTCACGGGGACTCGAGCGC...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGGTTCACATCTTTTGTaGAGTAGTGTTCCCATGGTG +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSGSHLL*SSVPMV
Trigger: CACCATGGGAACACTACTGCACAAAAGATGTGAACC...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAATTGCTGGGAGGAGCTaGCAAGGAAGAGAAGTTCGT +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKIAGRS*QGREVR
Trigger: ACGAACTTCTCTTCCTTGGCAGCTCCTCCCAGCAAT...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTTGGTGGCAGCGGATTTaGTCCCCATTCCAAAACCTC +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTWWQRI*SPFQNL
Trigger: GAGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCA...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCAACACAGACATTTTTaGGGTTCTGCAGTAGCCAGT +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSQHRHF*GSAVAS
Trigger: ACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCAGCAGGGCCAGGCGTaGAGTAGAGATTACAGAAAA +
Preference number: 4 (lower is better)
Translates to: AESASQRTGWNVKTLQGQQQGQA*SRDYRK
Trigger: TTTTCTGTAATCTCTACTCCACGCCTGGCCCTGCTG...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTTGCCTTGATCGTGAGTaGCTTGAAGTGAGGGCGGTA +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPICLDRE*LEVRAV
Trigger: TACCGCCCTCACTTCAAGCCACTCACGATCAAGGCA...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTTGCCTTGATCGTGAGTaGCTTGAAGTGAGGGCGGTA +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTCLDRE*LEVRAV
Trigger: TACCGCCCTCACTTCAAGCCACTCACGATCAAGGCA...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCATTGCCATGGGGGCTaGAGAGAGTCAGTAGCTCAT +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTHCHGG*RESVAH
Trigger: ATGAGCTACTGACTCTCTCCAGCCCCCATGGCAATG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGGAGGTCCACTTCCTCTaGGGGAGGAGGCGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQEVHFL*GRRRSW
Trigger: CCAGCTGCGCCTCCTCCCCCAGAGGAAGTGGACCTC...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCAAATCCTGACCTGGTaGCTTAGCAGGGGCTCCAAA +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTQILTW*LSRGSK
Trigger: TTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATTTG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCCAGCAATGTCGGGCTaGATGTTCACAGCAGGAGTA +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIPAMSG*MFTAGV
Trigger: TACTCCTGCTGTGAACATCCAGCCCGACATTGCTGG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGTCCACCCAATCCAGTTaGGGTGGTAGGTTTGCTGGC +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWSTQSS*GGRFAG
Trigger: GCCAGCAAACCTACCACCCCAACTGGATTGGGTGGA...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTAGCTCACGTTGTAATTaGGTCGGTTCTGAGGGGAGG +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPISSRCN*VGSEGR
Trigger: CCTCCCCTCAGAACCGACCCAATTACAACGTGAGCT...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTAGCTCACGTTGTAATTaGGTCGGTTCTGAGGGGAGG +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTSSRCN*VGSEGR
Trigger: CCTCCCCTCAGAACCGACCCAATTACAACGTGAGCT...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAGCACCAACCAGGATTaGCGACGCGGCCCGTCCATC +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQSTNQD*RRGPSI
Trigger: GATGGACGGGCCGCGTCGTCAATCCTGGTTGGTGCT...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCATTGGTCACCTTCGCCTaGAGCCGGCTCCCGATGGTT +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSLVTFA*SRLPMV
Trigger: AACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCAA...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTTCTGGTACATCACATaGATCCAGCTCAGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHFWYIT*IQLRLG
Trigger: ACCAAGCCTGAGCTGGATGCATGTGATGTACCAGAA...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGTGGTGGCAGCGGATTTaGTCCCCATTCCAAAACCTC +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWWWQRI*SPFQNL
Trigger: GAGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCA...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCCAGAGTCTGGGGCTTaGTCTGATGGGTGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQPESGA*SDGWGC
Trigger: GCACCCCCACCCATCAGAGCAAGCCCCAGACTCTGG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGCTGAGCTGTCCGTGGTaGTGGCGCGGTGCGGAGGCT +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWLSCPW*WRGAEA
Trigger: AGCCTCCGCACCGCGCCAGCACCACGGACAGCTCAG...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGCATTGCCATGGGGGCTaGAGAGAGTCAGTAGCTCAT +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWHCHGG*RESVAH
Trigger: ATGAGCTACTGACTCTCTCCAGCCCCCATGGCAATG...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGGGAGGAGGCGCAGCTaGCTCCTGCTGCTTTTTGCC +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVGRRRS*LLLLFA
Trigger: GGCAAAAAGCAGCAGGAGCCAGCTGCGCCTCCTCCC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAACAAAAGGGTCAAAGGTaGCACCTTCTCCCACTCTTA +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKQKGQR*HLLPLL
Trigger: TAAGAGTGGGAGAAGGTGCCACCTTTGACCCTTTTG...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGCAAAACCTCCTGGTTTaGTGTGCCAGTCCCAACCTC +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWQNLLV*CASPNL
Trigger: GAGGTTGGGACTGGCACACCAAACCAGGAGGTTTTG...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTTGGAGGATGTATCTTTaGGAGTGTCTTTCAAGTTGT +
Preference number: 4 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSWRMYL*ECLSSC
Trigger: ACAACTTGAAAGACACTCTCAAAGATACATCCTCCA...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCAGACTGCTCACTTTCCTaGTTCACCAGGGCAGCGTGG +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSDCSLS*FTRAAW
Trigger: CCACGCTGCCCTGGTGAATCAGGAAAGTGAGCAGTC...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCCAGCCTGTCCTGCCTaGGCAGGACCTGTGGCACCT +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCPACPA*AGPVAP
Trigger: AGGTGCCACAGGTCCTGCTCAGGCAGGACAGGCTGG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTACCCCAGCCTGTCCTaGCTGAGCAGGACCTGTGGC +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCYPSLS*LSRTCG
Trigger: GCCACAGGTCCTGCTCAGGCAGGACAGGCTGGGGTA...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGCGCGGTGTGGACTGTaGAGACACAGGTCCACTAGG +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVARCGL*RHRSTR
Trigger: CCTAGTGGACCTGTGTCTGCACAGTCCACACCGCGC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGGCGCGGTGTGGACTGTaGAGACACAGGTCCACTAGG +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQARCGL*RHRSTR
Trigger: CCTAGTGGACCTGTGTCTGCACAGTCCACACCGCGC...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACCAACACAGACATTTTTaGGGTTCTGCAGTAGCCAGT +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHQHRHF*GSAVAS
Trigger: ACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTG...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTACGATGACATCACCTTaGACTGTGATGTTCAGAGGG +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPITMTSP*TVMFRG
Trigger: CCCTCTGAACATCACAGTCCAAGGTGATGTCATCGT...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAATGGTTGACCGCAAGTaGTACATGGAAACGATGACA +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKMVDRK*YMETMT
Trigger: TGTCATCGTTTCCATGTACCACTTGCGGTCAACCAT...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGCAGCCGGCTCCCGATaGTTGACCGCAAGTGGTACA +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVAAGSR*LTASGT
Trigger: TGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGTTCACCAGGGCAGCGTaGTCCTCCTCACAGCGTGAC +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQFTRAA*SSSQRD
Trigger: GTCACGCTGTGAGGAGGACCACGCTGCCCTGGTGAA...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGGAGGTCCACTTCCTCTaGGGGAGGAGGCGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWEVHFL*GRRRSW
Trigger: CCAGCTGCGCCTCCTCCCCCAGAGGAAGTGGACCTC...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCGAGGTCCACTTCCTCTaGGGGAGGAGGCGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCEVHFL*GRRRSW
Trigger: CCAGCTGCGCCTCCTCCCCCAGAGGAAGTGGACCTC...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACCTGAGCAGGACCTGTaGCACCTACACCCCCAAACA +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSPEQDL*HLHPQT
Trigger: TGTTTGGGGGTGTAGGTGCCACAGGTCCTGCTCAGG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCAAAAGGGTCAAAGGTaGCACCTTCTCCCACTCTTA +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTQKGQR*HLLPLL
Trigger: TAAGAGTGGGAGAAGGTGCCACCTTTGACCCTTTTG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCATGTCCTTCAGGTTACTaGATAGCCTCCCTGCACCGC +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSCPSGY*IASLHR
Trigger: GCGGTGCAGGGAGGCTATTCAGTAACCTGAAGGACA...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGAGCACCAACCAGGATTaGCGACGCGGCCCGTCCATC +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWSTNQD*RRGPSI
Trigger: GATGGACGGGCCGCGTCGTCAATCCTGGTTGGTGCT...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACGGTATAAACCCAGAATaGAACTGGAGCTGGAATATC +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHGINPE*NWSWNI
Trigger: GATATTCCAGCTCCAGTTTCATTCTGGGTTTATACC...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACGTCACTTGGAACAGCTaGGGATATTTTTCTGGTACA +
Preference number: 4 (lower is better)
Translates to: VGFPKDRLECQDSARSAHVTWNS*GYFSGT
Trigger: TGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGAC...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGTCACTTGGAACAGCTaGGGATATTTTTCTGGTACA +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKVTWNS*GYFSGT
Trigger: TGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGAC...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCAGATCGGCTGGAGCCTaGCCCCCTAAGGCCAGAGTG +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCRSAGA*PPKARV
Trigger: CACTCTGGCCTTAGGGGGTCAGGCTCCAGCCGATCT...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGAGATCGGCTGGAGCCTaGCCCCCTAAGGCCAGAGTG +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWRSAGA*PPKARV
Trigger: CACTCTGGCCTTAGGGGGTCAGGCTCCAGCCGATCT...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTGACTTCTCTGATTTCTaGTCTTGCCAACAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIDFSDF*SCQQRE
Trigger: CTCTCTCTGTTGGCAAGATCAGAAATCAGAGAAGTC...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACACCAGCCTGTCCTGCCTaGGCAGGACCTGTGGCACCT +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTPACPA*AGPVAP
Trigger: AGGTGCCACAGGTCCTGCTCAGGCAGGACAGGCTGG...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCGGCACCCATTTCTCTaGTTATTGAAGAAGGGAACT +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIRHPFL*LLKKGT
Trigger: AGTTCCCTTCTTCAATAAGCAGAGAAATGGGTGCCG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCGGCACCCATTTCTCTaGTTATTGAAGAAGGGAACT +
Preference number: 4 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTRHPFL*LLKKGT
Trigger: AGTTCCCTTCTTCAATAAGCAGAGAAATGGGTGCCG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTTGGTCACCTTCGCCTaGAGCCGGCTCCCGATGGTT +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCLVTFA*SRLPMV
Trigger: AACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCAA...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTGGTTCACATCTTTTGTaGAGTAGTGTTCCCATGGTG +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIGSHLL*SSVPMV
Trigger: CACCATGGGAACACTACTGCACAAAAGATGTGAACC...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGGAGAGGAGAAGAGGATaGTGGGGTTCACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWERRRG*WGSHLL
Trigger: CAAAAGATGTGAACCCCAGCATCCTCTTCTCCTCTC...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTACCCCAGCCTGTCCTaGCTGAGCAGGACCTGTGGC +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWYPSLS*LSRTCG
Trigger: GCCACAGGTCCTGCTCAGGCAGGACAGGCTGGGGTA...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCGGCCTCCCCCATAGCTaGGCTCCATGTCTGGAGACG +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCGLPHS*APCLET
Trigger: CGTCTCCAGACATGGAGCCCAGCTATGGGGGAGGCC...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038207.12
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAAGTGGTCAAGATGTCTaGAATCCAAAAAGCTACGGA +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKSGQDV*NPKSYG
Trigger: TCCGTAGCTTTTTGGATTCCAGACATCTTGACCACT...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACAACAAATCCTGACCTaGTGGCTTAGCAGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSQQILT*WLSRGS
Trigger: GGAGCCCCTGCTAAGCCACCAGGTCAGGATTTGTTG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCCTCCACCCATTGGCTaGGGGGATGCTTTCTGTGGT +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQPPPIG*GDAFCG
Trigger: ACCACAGAAAGCATCCCCCCAGCCAATGGGTGGAGG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCCACGGGTTTCCATTTaGTCTCCCCAGCCCACAGCA +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQPRVSI*SPQPTA
Trigger: TGCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAAAGGGCTTTTGGCCTTaGTTTTCAAATTCAGACCAG +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKKGFWP*FSNSDQ
Trigger: CTGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTT...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAACATCAACCTGATTCCTaGATCCTATGTCAACACTAT +
Preference number: 4 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKHQPDS*ILCQHY
Trigger: ATAGTGTTGACATAGGATTCAGGAATCAGGTTGATG...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCGGGCCAACTGCACTCTaGGACCCGGCTGTGGAACTT +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCGPTAL*DPAVEL
Trigger: AAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGGCCC...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTAGCACCAACCAGGATTaGCGACGCGGCCCGTCCATC +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRSTNQD*RRGPSI
Trigger: GATGGACGGGCCGCGTCGTCAATCCTGGTTGGTGCT...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTGGTATAAACCCAGAATaGAACTGGAGCTGGAATATC +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIGINPE*NWSWNI
Trigger: GATATTCCAGCTCCAGTTTCATTCTGGGTTTATACC...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGGGCTTCTTGGCTCCATaGGGCTTATCACCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQGFLAP*GLSPSA
Trigger: TGCAGAGGGTGATAAGCCTCATGGAGCCAAGAAGCC...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTGTCTGGGGCTTGCTCTaGTGGGTGGGGGTGCCATGT +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRVWGLL*WVGVPC
Trigger: ACATGGCACCCCCACCCATCAGAGCAAGCCCCAGAC...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACTTTCTGTGGTGAGCTaGGAGGTGGAAATCCTCCAC +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSLSVVS*EVEILH
Trigger: GTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCAGGATGCTTTCTGTGGTaGGCTGAGAGGTGGAAATCC +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSGCFLW*AERWKS
Trigger: GGATTTCCACCTCTCAGCTCACCACAGAAAGCATCC...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTTGTGCATTGAAGCCTTaGCTAGAAAGCAGATCTTCA +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPICALKP*LESRSS
Trigger: TGAAGATCTGCTTTCTAGTCAAGGCTTCAATGCACA...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTTGTAGACTTGGAGCCTaGCTGATGGGCCAACTGCAC +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVCRLGA*LMGQLH
Trigger: GTGCAGTTGGCCCATCAGGCAGGCTCCAAGTCTACA...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGCGGCACCCATTTCTCTaGTTATTGAAGAAGGGAACT +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWRHPFL*LLKKGT
Trigger: AGTTCCCTTCTTCAATAAGCAGAGAAATGGGTGCCG...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTTGGTCACCTTCGCCTaGAGCCGGCTCCCGATGGTT +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWLVTFA*SRLPMV
Trigger: AACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCAA...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCTTGGTCACCTTCGCCTaGAGCCGGCTCCCGATGGTT +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCLVTFA*SRLPMV
Trigger: AACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCAA...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTTATCACCCTCTGCATTaGCATGGGGGCTGGAGAGAG +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVYHPLH*HGGWRE
Trigger: CTCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATA...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGGCAGCTGGCTCCTGCTaGTTTTTGCCTGGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQAAGSC*FLPGFL
Trigger: CAAGAAGCCAGGCAAAAAGCAGCAGGAGCCAGCTGC...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCGGCGCAGCTGGCTCCTaGTGCTTTTTGCCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCGAAGS*CFLPGF
Trigger: GAAGCCAGGCAAAAAGCAGCAGGAGCCAGCTGCGCC...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGCCCACAGCACGGTGTaGATTGTGGAAAGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVAHSTV*IVESRA
Trigger: AGCTCTGCTTTCCACAATGCACACCGTGCTGTGGGC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGGCCCACAGCACGGTGTaGATTGTGGAAAGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQAHSTV*IVESRA
Trigger: AGCTCTGCTTTCCACAATGCACACCGTGCTGTGGGC...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTGTTGCCTTGTCAGGGTaGACCACTAGCACAGCCCTC +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCVALSG*TTSTAL
Trigger: GAGGGCTGTGCTAGTGGTGCACCCTGACAAGGCAAC...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGGCAGCCGGCTCCCGATaGTTGACCGCAAGTGGTACA +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWAAGSR*LTASGT
Trigger: TGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGC...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGGCAGCCGGCTCCCGATaGTTGACCGCAAGTGGTACA +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWAAGSR*LTASGT
Trigger: TGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGC...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGTCGATCACTTTGTCTTaGGGCTGGACTTCTATATCC +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWSITLS*GWTSIS
Trigger: GGATATAGAAGTCCAGCCCCAAGACAAAGTGATCGA...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAGAGGTCCACTTCCTCTaGGGGAGGAGGCGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLREVHFL*GRRRSW
Trigger: CCAGCTGCGCCTCCTCCCCCAGAGGAAGTGGACCTC...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTCCTGAGCAGGACCTGTaGCACCTACACCCCCAAACA +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCPEQDL*HLHPQT
Trigger: TGTTTGGGGGTGTAGGTGCCACAGGTCCTGCTCAGG...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACCAGCAATGTCGGGCTaGATGTTCACAGCAGGAGTA +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSPAMSG*MFTAGV
Trigger: TACTCCTGCTGTGAACATCCAGCCCGACATTGCTGG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCAAGCTCACGTTGTAATTaGGTCGGTTCTGAGGGGAGG +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSSSRCN*VGSEGR
Trigger: CCTCCCCTCAGAACCGACCCAATTACAACGTGAGCT...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCATCAACCTGATTCCTaGATCCTATGTCAACACTAT +
Preference number: 4 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIHQPDS*ILCQHY
Trigger: ATAGTGTTGACATAGGATTCAGGAATCAGGTTGATG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGGGTATAAACCCAGAATaGAACTGGAGCTGGAATATC +
Preference number: 4 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWGINPE*NWSWNI
Trigger: GATATTCCAGCTCCAGTTTCATTCTGGGTTTATACC...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGGACTGCTCACTTTCCTaGTTCACCAGGGCAGCGTGG +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWDCSLS*FTRAAW
Trigger: CCACGCTGCCCTGGTGAATCAGGAAAGTGAGCAGTC...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTGGCTTCTTGGCTCCATaGGGCTTATCACCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCGFLAP*GLSPSA
Trigger: TGCAGAGGGTGATAAGCCTCATGGAGCCAAGAAGCC...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTTCAGCAACTCAGAATTaGTGGGAGGAGCTGCCAAGG +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVSATQN*WEELPR
Trigger: CCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGA...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGTGGTGGCAGCGGATTTaGTCCCCATTCCAAAACCTC +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQWWQRI*SPFQNL
Trigger: GAGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCA...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTCTGATGGGTGGGGGTaGCATGTGATGAGCCTGTCG +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWSDGWG*HVMSLS
Trigger: CGACAGGCTCATCACATGGCACCCCCACCCATCAGA...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGACGTTCGCTCTGCCCTaGAGGCATAGCCGAGAAGCT +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWTFALP*RHSREA
Trigger: AGCTTCTCGGCTATGCCTGCAGGGCAGAGCGAACGT...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACAGCAGGGCCAGGCGTaGAGTAGAGATTACAGAAAA +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSQQGQA*SRDYRK
Trigger: TTTTCTGTAATCTCTACTCCACGCCTGGCCCTGCTG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTGCAGCCGGCTCCCGATaGTTGACCGCAAGTGGTACA +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRAAGSR*LTASGT
Trigger: TGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGC...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGGAATATCTGTGTGTTaGTCACCTTCGCCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVGISVC*SPSPAA
Trigger: GGCTGCAGGCGAAGGTGACCAACACACAGATATTCC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTCTGCTGCTTTTTGCCTaGCTTCTTGGCTCCATGAGG +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVLLLFA*LLGSMR
Trigger: CCTCATGGAGCCAAGAAGCCAGGCAAAAAGCAGCAG...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAGGGAGGAGGCGCAGCTaGCTCCTGCTGCTTTTTGCC +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRGRRRS*LLLLFA
Trigger: GGCAAAAAGCAGCAGGAGCCAGCTGCGCCTCCTCCC...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCCTGAGCAGGACCTGTaGCACCTACACCCCCAAACA +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCPEQDL*HLHPQT
Trigger: TGTTTGGGGGTGTAGGTGCCACAGGTCCTGCTCAGG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCAAATCCTGACCTGGTaGCTTAGCAGGGGCTCCAAA +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQQILTW*LSRGSK
Trigger: TTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATTTG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTCAAAACCTCCTGGTTTaGTGTGCCAGTCCCAACCTC +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVQNLLV*CASPNL
Trigger: GAGGTTGGGACTGGCACACCAAACCAGGAGGTTTTG...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTGACTGCTCACTTTCCTaGTTCACCAGGGCAGCGTGG +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRDCSLS*FTRAAW
Trigger: CCACGCTGCCCTGGTGAATCAGGAAAGTGAGCAGTC...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCTGTAGACTTGGAGCCTaGCTGATGGGCCAACTGCAC +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCCRLGA*LMGQLH
Trigger: GTGCAGTTGGCCCATCAGGCAGGCTCCAAGTCTACA...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGTAGACTTGGAGCCTaGCTGATGGGCCAACTGCAC +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWCRLGA*LMGQLH
Trigger: GTGCAGTTGGCCCATCAGGCAGGCTCCAAGTCTACA...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGGCAGCTGGCTCCTGCTaGTTTTTGCCTGGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWAAGSC*FLPGFL
Trigger: CAAGAAGCCAGGCAAAAAGCAGCAGGAGCCAGCTGC...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCGCAGCTGGCTCCTGCTaGTTTTTGCCTGGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCAAGSC*FLPGFL
Trigger: CAAGAAGCCAGGCAAAAAGCAGCAGGAGCCAGCTGC...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTATTGCTGGGAGGAGCTaGCAAGGAAGAGAAGTTCGT +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVIAGRS*QGREVR
Trigger: ACGAACTTCTCTTCCTTGGCAGCTCCTCCCAGCAAT...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTGGGCTTCTCGTGGGCTaGAGAAAGGGGTCGCTAGAA +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRGLLVG*RKGSLE
Trigger: TTCTAGCGACCCCTTTCTGCAGCCCACGAGAAGCCC...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATTCACCAGGGCAGCGTaGTCCTCCTCACAGCGTGAC +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRFTRAA*SSSQRD
Trigger: GTCACGCTGTGAGGAGGACCACGCTGCCCTGGTGAA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCATTTTGCCTGGCTTCTTaGCTCCATGAGGCTTATCAC +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSFCLAS*LHEAYH
Trigger: GTGATAAGCCTCATGGAGCCAAGAAGCCAGGCAAAA...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGCAACAAATCCTGACCTaGTGGCTTAGCAGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWQQILT*WLSRGS
Trigger: GGAGCCCCTGCTAAGCCACCAGGTCAGGATTTGTTG...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCTCCACCCAATCCAGTTaGGGTGGTAGGTTTGCTGGC +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCSTQSS*GGRFAG
Trigger: GCCAGCAAACCTACCACCCCAACTGGATTGGGTGGA...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTCCACCCAATCCAGTTaGGGTGGTAGGTTTGCTGGC +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWSTQSS*GGRFAG
Trigger: GCCAGCAAACCTACCACCCCAACTGGATTGGGTGGA...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTCCTCCACCCATTGGCTaGGGGGATGCTTTCTGTGGT +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRPPPIG*GDAFCG
Trigger: ACCACAGAAAGCATCCCCCCAGCCAATGGGTGGAGG...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTCATAACCATCGCTGCTaGTCTTTTTCCGGTAGCTCC +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVHNHRC*SFSGSS
Trigger: GGAGCTACCGGAAAAAGACCAGCAGCGATGGTTATG...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTTGTCCTTCAGGTTACTaGATAGCCTCCCTGCACCGC +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRCPSGY*IASLHR
Trigger: GCGGTGCAGGGAGGCTATTCAGTAACCTGAAGGACA...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACAGGCTTCTTGGCTCCATaGGGCTTATCACCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTGFLAP*GLSPSA
Trigger: TGCAGAGGGTGATAAGCCTCATGGAGCCAAGAAGCC...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGCTTTCTGTGGTGAGCTaGGAGGTGGAAATCCTCCAC +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWLSVVS*EVEILH
Trigger: GTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAG...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGGGATGCTTTCTGTGGTaGGCTGAGAGGTGGAAATCC +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWGCFLW*AERWKS
Trigger: GGATTTCCACCTCTCAGCTCACCACAGAAAGCATCC...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACGGCACCCATTTCTCTaGTTATTGAAGAAGGGAACT +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSRHPFL*LLKKGT
Trigger: AGTTCCCTTCTTCAATAAGCAGAGAAATGGGTGCCG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGAGAGGAGAAGAGGATaGTGGGGTTCACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVERRRG*WGSHLL
Trigger: CAAAAGATGTGAACCCCAGCATCCTCTTCTCCTCTC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGGAGAGGAGAAGAGGATaGTGGGGTTCACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQERRRG*WGSHLL
Trigger: CAAAAGATGTGAACCCCAGCATCCTCTTCTCCTCTC...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACAGCAGCTGGCTCCTGCTaGTTTTTGCCTGGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTAAGSC*FLPGFL
Trigger: CAAGAAGCCAGGCAAAAAGCAGCAGGAGCCAGCTGC...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGCAGCGGATTTaGTCCCCATTCCAAAACCTC +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWWWQRI*SPFQNL
Trigger: GAGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCA...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCTGGTGGCAGCGGATTTaGTCCCCATTCCAAAACCTC +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCWWQRI*SPFQNL
Trigger: GAGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCA...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATCTGATGGGTGGGGGTaGCATGTGATGAGCCTGTCG +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRSDGWG*HVMSLS
Trigger: CGACAGGCTCATCACATGGCACCCCCACCCATCAGA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAACGTTCGCTCTGCCCTaGAGGCATAGCCGAGAAGCT +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRTFALP*RHSREA
Trigger: AGCTTCTCGGCTATGCCTGCAGGGCAGAGCGAACGT...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACAGCCCACAGCACGGTGTaGATTGTGGAAAGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTAHSTV*IVESRA
Trigger: AGCTCTGCTTTCCACAATGCACACCGTGCTGTGGGC...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTCAGCAGGGCCAGGCGTaGAGTAGAGATTACAGAAAA +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCQQGQA*SRDYRK
Trigger: TTTTCTGTAATCTCTACTCCACGCCTGGCCCTGCTG...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTGCCTTGATCGTGAGTaGCTTGAAGTGAGGGCGGTA +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWCLDRE*LEVRAV
Trigger: TACCGCCCTCACTTCAAGCCACTCACGATCAAGGCA...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCGGAATATCTGTGTGTTaGTCACCTTCGCCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCGISVC*SPSPAA
Trigger: GGCTGCAGGCGAAGGTGACCAACACACAGATATTCC...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCATTGCCATGGGGGCTaGAGAGAGTCAGTAGCTCAT +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCHCHGG*RESVAH
Trigger: ATGAGCTACTGACTCTCTCCAGCCCCCATGGCAATG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGACCCTCTGCATTGCCATaGGGGCTGGAGAGAGTCAGT +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRPSALP*GLERVS
Trigger: ACTGACTCTCTCCAGCCCCCATGGCAATGCAGAGGG...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTTTTTGCCTGGCTTCTTaGCTCCATGAGGCTTATCAC +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVFCLAS*LHEAYH
Trigger: GTGATAAGCCTCATGGAGCCAAGAAGCCAGGCAAAA...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGGCAACTCAGAATTGCTaGGAGGAGCTGCCAAGGAAG +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWATQNC*EELPRK
Trigger: CTTCCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGC...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGACCTGAGCAGGACCTGTaGCACCTACACCCCCAAACA +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRPEQDL*HLHPQT
Trigger: TGTTTGGGGGTGTAGGTGCCACAGGTCCTGCTCAGG...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCAAATCCTGACCTGGTaGCTTAGCAGGGGCTCCAAA +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCQILTW*LSRGSK
Trigger: TTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATTTG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTCAACAAATCCTGACCTaGTGGCTTAGCAGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRQQILT*WLSRGS
Trigger: GGAGCCCCTGCTAAGCCACCAGGTCAGGATTTGTTG...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCCAGCAATGTCGGGCTaGATGTTCACAGCAGGAGTA +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCPAMSG*MFTAGV
Trigger: TACTCCTGCTGTGAACATCCAGCCCGACATTGCTGG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGCAAAACCTCCTGGTTTaGTGTGCCAGTCCCAACCTC +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWQNLLV*CASPNL
Trigger: GAGGTTGGGACTGGCACACCAAACCAGGAGGTTTTG...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGACCTCCACCCATTGGCTaGGGGGATGCTTTCTGTGGT +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRPPPIG*GDAFCG
Trigger: ACCACAGAAAGCATCCCCCCAGCCAATGGGTGGAGG...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGACCACGGGTTTCCATTTaGTCTCCCCAGCCCACAGCA +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRPRVSI*SPQPTA
Trigger: TGCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGG...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CAA 72 bp TCAAGACTCTGCAAGGTCAGCTCACTAGAGTTCCTCTaGGTGCTATGGACTTCAAGAAACCAAACGTTCACA +
Preference number: 4 (lower is better)
Translates to: SRLCKVSSLEFL*VLWTSRNQTFT
Trigger: TGTGAACGTTTGGTTTCTTGAAGTCCATAGCACCAAGAGGAACTCTAGTGAGCTGACCTTGCAGAGTCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
3UTR CAA 72 bp AGCACTCAGTGTTATCTTCTCTGTTTTTCCCCTGGCTaGCAGTCACCAGAATGCCAGGTCTATACAAAGTGT +
Preference number: 4 (lower is better)
Translates to: STQCYLLCFSPG*QSPECQVYTKC
Trigger: ACACTTTGTATAGACCTGGCATTCTGGTGACTGCAAGCCAGGGGAAAAACAGAGAAGATAACACTGAGTGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCAGTCACTTGGAACAGCTaGGGATATTTTTCTGGTACA +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSVTWNS*GYFSGT
Trigger: TGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGAC...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGGGTTCACATCTTTTGTaGAGTAGTGTTCCCATGGTG +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQGSHLL*SSVPMV
Trigger: CACCATGGGAACACTACTGCACAAAAGATGTGAACC...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTGCAAAGAAGCCTCCTTaGCCAAGATTCCTGGGATGG +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRAKKPP*PRFLGW
Trigger: CCATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGC...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATATCACCCTCTGCATTaGCATGGGGGCTGGAGAGAG +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRYHPLH*HGGWRE
Trigger: CTCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGATTGCTGGGAGGAGCTaGCAAGGAAGAGAAGTTCGT +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWIAGRS*QGREVR
Trigger: ACGAACTTCTCTTCCTTGGCAGCTCCTCCCAGCAAT...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACATCAGCAACTCAGAATTaGTGGGAGGAGCTGCCAAGG +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTSATQN*WEELPR
Trigger: CCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGA...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACAGTTCGGTAAGACTTaGGTGACAAGTTGTATACTG +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSQFGKT*VTSCIL
Trigger: CAGTATACAACTTGTCACCCAAGTCTTACCGAACTG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCAACACAGACATTTTTaGGGTTCTGCAGTAGCCAGT +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQQHRHF*GSAVAS
Trigger: ACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTTGCCTTGATCGTGAGTaGCTTGAAGTGAGGGCGGTA +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRCLDRE*LEVRAV
Trigger: TACCGCCCTCACTTCAAGCCACTCACGATCAAGGCA...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTACGATGACATCACCTTaGACTGTGATGTTCAGAGGG +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCTMTSP*TVMFRG
Trigger: CCCTCTGAACATCACAGTCCAAGGTGATGTCATCGT...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTATGGTTGACCGCAAGTaGTACATGGAAACGATGACA +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVMVDRK*YMETMT
Trigger: TGTCATCGTTTCCATGTACCACTTGCGGTCAACCAT...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACAGGAATATCTGTGTGTTaGTCACCTTCGCCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTGISVC*SPSPAA
Trigger: GGCTGCAGGCGAAGGTGACCAACACACAGATATTCC...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTGGAATATCTGTGTGTTaGTCACCTTCGCCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRGISVC*SPSPAA
Trigger: GGCTGCAGGCGAAGGTGACCAACACACAGATATTCC...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTCATTGCCATGGGGGCTaGAGAGAGTCAGTAGCTCAT +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRHCHGG*RESVAH
Trigger: ATGAGCTACTGACTCTCTCCAGCCCCCATGGCAATG...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACACATTGCCATGGGGGCTaGAGAGAGTCAGTAGCTCAT +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTHCHGG*RESVAH
Trigger: ATGAGCTACTGACTCTCTCCAGCCCCCATGGCAATG...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTCTGCTGCTTTTTGCCTaGCTTCTTGGCTCCATGAGG +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRLLLFA*LLGSMR
Trigger: CCTCATGGAGCCAAGAAGCCAGGCAAAAAGCAGCAG...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACACTGCTGCTTTTTGCCTaGCTTCTTGGCTCCATGAGG +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTLLLFA*LLGSMR
Trigger: CCTCATGGAGCCAAGAAGCCAGGCAAAAAGCAGCAG...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACACAAATCCTGACCTGGTaGCTTAGCAGGGGCTCCAAA +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTQILTW*LSRGSK
Trigger: TTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATTTG...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACACAAAACCTCCTGGTTTaGTGTGCCAGTCCCAACCTC +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTQNLLV*CASPNL
Trigger: GAGGTTGGGACTGGCACACCAAACCAGGAGGTTTTG...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATCCACCCAATCCAGTTaGGGTGGTAGGTTTGCTGGC +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRSTQSS*GGRFAG
Trigger: GCCAGCAAACCTACCACCCCAACTGGATTGGGTGGA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTAGCTCACGTTGTAATTaGGTCGGTTCTGAGGGGAGG +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRSSRCN*VGSEGR
Trigger: CCTCCCCTCAGAACCGACCCAATTACAACGTGAGCT...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCAAAGGGCTTTTGGCCTTaGTTTTCAAATTCAGACCAG +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSKGFWP*FSNSDQ
Trigger: CTGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTT...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACATCAACCTGATTCCTaGATCCTATGTCAACACTAT +
Preference number: 4 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSHQPDS*ILCQHY
Trigger: ATAGTGTTGACATAGGATTCAGGAATCAGGTTGATG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGGTATAAACCCAGAATaGAACTGGAGCTGGAATATC +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVGINPE*NWSWNI
Trigger: GATATTCCAGCTCCAGTTTCATTCTGGGTTTATACC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGACTTTCTGTGGTGAGCTaGGAGGTGGAAATCCTCCAC +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRLSVVS*EVEILH
Trigger: GTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAG...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGTGTGCATTGAAGCCTTaGCTAGAAAGCAGATCTTCA +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQCALKP*LESRSS
Trigger: TGAAGATCTGCTTTCTAGTCAAGGCTTCAATGCACA...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCTTCTGGTACATCACATaGATCCAGCTCAGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCFWYIT*IQLRLG
Trigger: ACCAAGCCTGAGCTGGATGCATGTGATGTACCAGAA...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGGAGAGGAGAAGAGGATaGTGGGGTTCACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWERRRG*WGSHLL
Trigger: CAAAAGATGTGAACCCCAGCATCCTCTTCTCCTCTC...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACAATTGCTGGGAGGAGCTaGCAAGGAAGAGAAGTTCGT +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTIAGRS*QGREVR
Trigger: ACGAACTTCTCTTCCTTGGCAGCTCCTCCCAGCAAT...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATCAGCAACTCAGAATTaGTGGGAGGAGCTGCCAAGG +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRSATQN*WEELPR
Trigger: CCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTAGTGGTCAAGATGTCTaGAATCCAAAAAGCTACGGA +
Preference number: 4 (lower is better)
Translates to: SELPPADVSLGKFHSCIVSGQDV*NPKSYG
Trigger: TCCGTAGCTTTTTGGATTCCAGACATCTTGACCACT...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCAGTTCGGTAAGACTTaGGTGACAAGTTGTATACTG +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQQFGKT*VTSCIL
Trigger: CAGTATACAACTTGTCACCCAAGTCTTACCGAACTG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTCAGCAGGGCCAGGCGTaGAGTAGAGATTACAGAAAA +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRQQGQA*SRDYRK
Trigger: TTTTCTGTAATCTCTACTCCACGCCTGGCCCTGCTG...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTATTGAAGAAGGGAACTaGGCTGACAGTGATTGCCTT +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCIEEGN*ADSDCL
Trigger: AAGGCAATCACTGTCAGCCCAGTTCCCTTCTTCAAT...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGACGATGACATCACCTTaGACTGTGATGTTCAGAGGG +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWTMTSP*TVMFRG
Trigger: CCCTCTGAACATCACAGTCCAAGGTGATGTCATCGT...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGACCAGCAATGTCGGGCTaGATGTTCACAGCAGGAGTA +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRPAMSG*MFTAGV
Trigger: TACTCCTGCTGTGAACATCCAGCCCGACATTGCTGG...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTGTCACTTGGAACAGCTaGGGATATTTTTCTGGTACA +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCVTWNS*GYFSGT
Trigger: TGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGAC...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGGACTTCTCTGATTTCTaGTCTTGCCAACAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWDFSDF*SCQQRE
Trigger: CTCTCTCTGTTGGCAAGATCAGAAATCAGAGAAGTC...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGGACTTCTCTGATTTCTaGTCTTGCCAACAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWDFSDF*SCQQRE
Trigger: CTCTCTCTGTTGGCAAGATCAGAAATCAGAGAAGTC...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGCGGCACCCATTTCTCTaGTTATTGAAGAAGGGAACT +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWRHPFL*LLKKGT
Trigger: AGTTCCCTTCTTCAATAAGCAGAGAAATGGGTGCCG...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACATTCTGGTACATCACATaGATCCAGCTCAGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTFWYIT*IQLRLG
Trigger: ACCAAGCCTGAGCTGGATGCATGTGATGTACCAGAA...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACAGAGAGGAGAAGAGGATaGTGGGGTTCACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTERRRG*WGSHLL
Trigger: CAAAAGATGTGAACCCCAGCATCCTCTTCTCCTCTC...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAATTGCTGGGAGGAGCTaGCAAGGAAGAGAAGTTCGT +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRIAGRS*QGREVR
Trigger: ACGAACTTCTCTTCCTTGGCAGCTCCTCCCAGCAAT...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGCAACACAGACATTTTTaGGGTTCTGCAGTAGCCAGT +
Preference number: 4 (lower is better)
Translates to: LSLMATIRRGFQIGLELWQHRHF*GSAVAS
Trigger: ACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTG...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCAACACAGACATTTTTaGGGTTCTGCAGTAGCCAGT +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCQHRHF*GSAVAS
Trigger: ACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCATTGAAGAAGGGAACTaGGCTGACAGTGATTGCCTT +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCIEEGN*ADSDCL
Trigger: AAGGCAATCACTGTCAGCCCAGTTCCCTTCTTCAAT...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCATGGTTGACCGCAAGTaGTACATGGAAACGATGACA +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCMVDRK*YMETMT
Trigger: TGTCATCGTTTCCATGTACCACTTGCGGTCAACCAT...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTCGATCACTTTGTCTTaGGGCTGGACTTCTATATCC +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWSITLS*GWTSIS
Trigger: GGATATAGAAGTCCAGCCCCAAGACAAAGTGATCGA...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACACAAAAGGGTCAAAGGTaGCACCTTCTCCCACTCTTA +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTQKGQR*HLLPLL
Trigger: TAAGAGTGGGAGAAGGTGCCACCTTTGACCCTTTTG...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTAAGGGCTTTTGGCCTTaGTTTTCAAATTCAGACCAG +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCKGFWP*FSNSDQ
Trigger: CTGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTT...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTCATCAACCTGATTCCTaGATCCTATGTCAACACTAT +
Preference number: 4 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCHQPDS*ILCQHY
Trigger: ATAGTGTTGACATAGGATTCAGGAATCAGGTTGATG...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTCGGTAAGACTTGGGTaGCAAGTTGTATACTGTGTA +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWSVRLG*QVVYCV
Trigger: TACACAGTATACAACTTGTCACCCAAGTCTTACCGA...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTGACTTCTCTGATTTCTaGTCTTGCCAACAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRDFSDF*SCQQRE
Trigger: CTCTCTCTGTTGGCAAGATCAGAAATCAGAGAAGTC...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATTCTGGTACATCACATaGATCCAGCTCAGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRFWYIT*IQLRLG
Trigger: ACCAAGCCTGAGCTGGATGCATGTGATGTACCAGAA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACAGGTTCACATCTTTTGTaGAGTAGTGTTCCCATGGTG +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTGSHLL*SSVPMV
Trigger: CACCATGGGAACACTACTGCACAAAAGATGTGAACC...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCTTTTTGTCTTTGTGTaGATTGAAGCCTTGACTAGA +
Preference number: 4 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQLFVFV*IEALTR
Trigger: TCTAGTCAAGGCTTCAATGCACACAAAGACAAAAAG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTATTCATAACCATCGCTaGTGGTCTTTTTCCGGTAGC +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRIHNHR*WSFSGS
Trigger: GCTACCGGAAAAAGACCAGCAGCGATGGTTATGAAT...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGAGTGGTCAAGATGTCTaGAATCCAAAAAGCTACGGA +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWSGQDV*NPKSYG
Trigger: TCCGTAGCTTTTTGGATTCCAGACATCTTGACCACT...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCAGTTCGGTAAGACTTaGGTGACAAGTTGTATACTG +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCQFGKT*VTSCIL
Trigger: CAGTATACAACTTGTCACCCAAGTCTTACCGAACTG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTATTGAAGAAGGGAACTaGGCTGACAGTGATTGCCTT +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRIEEGN*ADSDCL
Trigger: AAGGCAATCACTGTCAGCCCAGTTCCCTTCTTCAAT...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACAATGGTTGACCGCAAGTaGTACATGGAAACGATGACA +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTMVDRK*YMETMT
Trigger: TGTCATCGTTTCCATGTACCACTTGCGGTCAACCAT...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACATCGATCACTTTGTCTTaGGGCTGGACTTCTATATCC +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTSITLS*GWTSIS
Trigger: GGATATAGAAGTCCAGCCCCAAGACAAAGTGATCGA...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATTTTGCCTGGCTTCTTaGCTCCATGAGGCTTATCAC +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRFCLAS*LHEAYH
Trigger: GTGATAAGCCTCATGGAGCCAAGAAGCCAGGCAAAA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCAAGGGCTTTTGGCCTTaGTTTTCAAATTCAGACCAG +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCKGFWP*FSNSDQ
Trigger: CTGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTT...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGAAGGGCTTTTGGCCTTaGTTTTCAAATTCAGACCAG +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWKGFWP*FSNSDQ
Trigger: CTGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTT...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGCATCAACCTGATTCCTaGATCCTATGTCAACACTAT +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWHQPDS*ILCQHY
Trigger: ATAGTGTTGACATAGGATTCAGGAATCAGGTTGATG...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACATCGGTAAGACTTGGGTaGCAAGTTGTATACTGTGTA +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTSVRLG*QVVYCV
Trigger: TACACAGTATACAACTTGTCACCCAAGTCTTACCGA...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTTCGGTAAGACTTGGGTaGCAAGTTGTATACTGTGTA +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRSVRLG*QVVYCV
Trigger: TACACAGTATACAACTTGTCACCCAAGTCTTACCGA...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTGGTATAAACCCAGAATaGAACTGGAGCTGGAATATC +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRGINPE*NWSWNI
Trigger: GATATTCCAGCTCCAGTTTCATTCTGGGTTTATACC...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAGACTTCTCTGATTTCTaGTCTTGCCAACAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRDFSDF*SCQQRE
Trigger: CTCTCTCTGTTGGCAAGATCAGAAATCAGAGAAGTC...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACATGTGCATTGAAGCCTTaGCTAGAAAGCAGATCTTCA +
Preference number: 4 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTCALKP*LESRSS
Trigger: TGAAGATCTGCTTTCTAGTCAAGGCTTCAATGCACA...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAATTGAAGAAGGGAACTaGGCTGACAGTGATTGCCTT +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRIEEGN*ADSDCL
Trigger: AAGGCAATCACTGTCAGCCCAGTTCCCTTCTTCAAT...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATCGATCACTTTGTCTTaGGGCTGGACTTCTATATCC +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRSITLS*GWTSIS
Trigger: GGATATAGAAGTCCAGCCCCAAGACAAAGTGATCGA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGAGTCACTTGGAACAGCTaGGGATATTTTTCTGGTACA +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRVTWNS*GYFSGT
Trigger: TGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGAC...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR TCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATGTGCATTGAAGCCTTaGCTAGAAAGCAGATCTTCA +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRCALKP*LESRSS
Trigger: TGAAGATCTGCTTTCTAGTCAAGGCTTCAATGCACA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCTTTTTGTCTTTGTGTaGATTGAAGCCTTGACTAGA +
Preference number: 4 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCLFVFV*IEALTR
Trigger: TCTAGTCAAGGCTTCAATGCACACAAAGACAAAAAG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGCTTTTTGTCTTTGTGTaGATTGAAGCCTTGACTAGA +
Preference number: 4 (lower is better)
Translates to: LMATIRRGFQIGLELWWWLFVFV*IEALTR
Trigger: TCTAGTCAAGGCTTCAATGCACACAAAGACAAAAAG...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGACAGTTCGGTAAGACTTaGGTGACAAGTTGTATACTG +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRQFGKT*VTSCIL
Trigger: CAGTATACAACTTGTCACCCAAGTCTTACCGAACTG...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTACATTTTTGGGGTTCTaGAGTAGCCAGTTATACATA +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRTFLGF*SSQLYI
Trigger: TATGTATAACTGGCTACTGCAGAACCCCAAAAATGT...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTCTTTTTGTCTTTGTGTaGATTGAAGCCTTGACTAGA +
Preference number: 4 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRLFVFV*IEALTR
Trigger: TCTAGTCAAGGCTTCAATGCACACAAAGACAAAAAG...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR GCA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGACTTTTTGTCTTTGTGTaGATTGAAGCCTTGACTAGA +
Preference number: 4 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRLFVFV*IEALTR
Trigger: TCTAGTCAAGGCTTCAATGCACACAAAGACAAAAAG...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS GCA 90 bp CAGCGAAGGGATCCAGAGTCTGGGGCTTGCTCTGATGGGTGGGGGTaGCATGTGATGAGCCTGTCGGGCTGGTGGCAGCGGATTTGCTCC +
Preference number: 5 (lower is better)
Translates to: QRRDPESGACSDGWG*HVMSLSGWWQRICS
Trigger: GGAGCAAATCCGCTGCCACCAGCCCGACAGGCTCATCACATGGCACCCCCACCCATCAGAGCAAGCCCCAGACTCTGGATCCCTTCGCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CCA 90 bp CCAGGTCAGCGAAGGGATCCAGAGTCTGGGGCTTGCTCTGATGGGTaGGGGTGCCATGTGATGAGCCTGTCGGGCTGGTGGCAGCGGATT +
Preference number: 5 (lower is better)
Translates to: PGQRRDPESGACSDG*GCHVMSLSGWWQRI
Trigger: AATCCGCTGCCACCAGCCCGACAGGCTCATCACATGGCACCCCCACCCATCAGAGCAAGCCCCAGACTCTGGATCCCTTCGCTGACCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS GCA 90 bp TGGCGATGCAGAGGCGGAGGTGGCGGTTCGGCGCGGTGTGGACTGTaGAGACACAGGTCCACTAGGATGAAACACATCTTCTACCCCAGC +
Preference number: 5 (lower is better)
Translates to: WRCRGGGGGSARCGL*RHRSTRMKHIFYPS
Trigger: GCTGGGGTAGAAGATGTGTTTCATCCTAGTGGACCTGTGTCTGCACAGTCCACACCGCGCCGAACCGCCACCTCCGCCTCTGCATCGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CCA 90 bp TCCCTGCACCGCCTTTCACCATGTCAAAAAGGCCTCCCCCATAGCTaGGCTCCATGTCTGGAGACGAGGCACCTGAGCTGTCCGTGGTGC +
Preference number: 5 (lower is better)
Translates to: SLHRLSPCQKGLPHS*APCLETRHLSCPWC
Trigger: GCACCACGGACAGCTCAGGTGCCTCGTCTCCAGACATGGAGCCCAGCTATGGGGGAGGCCTTTTTGACATGGTGAAAGGCGGTGCAGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCCCACGGGTTTCCATTaGGTCTCCCCAGCCCACAGC +
Preference number: 5 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSPTGFH*VSPAHS
Trigger: GCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGGG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCATAGGGTTGCCCAGTaGCCTTGTCAGGGTGCACCA +
Preference number: 5 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSHRVAQ*PCQGAP
Trigger: TGGTGCACCCTGACAAGGCAACTGGGCAACCCTATG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CCA 90 bp GTAATTGGGTCGGTTCTGAGGGGAGGAGTGAGGCATACTGGACTGTaGCTTAGACTGTGTCTGCTGCCAGTTGTAGCCGGCTGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: VIGSVLRGGVRHTGL*LRLCLLPVVAGWLL
Trigger: CAGCAGCCAGCCGGCTACAACTGGCAGCAGACACAGTCTAAGCCACAGTCCAGTATGCCTCACTCCTCCCCTCAGAACCGACCCAATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCTCAGCAACTCAGAATaGCTGGGAGGAGCTGCCAAG +
Preference number: 5 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSLSNSE*LGGAAK
Trigger: CTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGAG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCTCCCACTCTTAGGGTaGGCGATGCAGAGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTLPLLG*AMQRRR
Trigger: CCTCCGCCTCTGCATCGCCAACCCTAAGAGTGGGAG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS GCA 90 bp GCAACTCAGAATTGCTGGGAGGAGCTGCCAAGGAAGAGAAGTTCGTaGTCACATCAGACCCTTCCAGGCCCAGGAGGTCCACTTCCTCTG +
Preference number: 5 (lower is better)
Translates to: ATQNCWEELPRKRSS*SHQTLPGPGGPLPL
Trigger: CAGAGGAAGTGGACCTCCTGGGCCTGGAAGGGTCTGATGTGAGCACGAACTTCTCTTCCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS GCA 90 bp CACAGGTCCACTAGGATGAAACACATCTTCTACCCCAGCCTGTCCTaGCTGAGCAGGACCTGTGGCACCTACACCCCCAAACAGGTCACT +
Preference number: 5 (lower is better)
Translates to: HRSTRMKHIFYPSLS*LSRTCGTYTPKQVT
Trigger: AGTGACCTGTTTGGGGGTGTAGGTGCCACAGGTCCTGCTCAGGCAGGACAGGCTGGGGTAGAAGATGTGTTTCATCCTAGTGGACCTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGCCCACGGGTTTCCATTaGGTCTCCCCAGCCCACAGC +
Preference number: 5 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWPTGFH*VSPAHS
Trigger: GCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGGG...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAACATAGGGTTGCCCAGTaGCCTTGTCAGGGTGCACCA +
Preference number: 5 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKHRVAQ*PCQGAP
Trigger: TGGTGCACCCTGACAAGGCAACTGGGCAACCCTATG...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CCA 90 bp CCTCCTGGTTTGGTGTGCCAGTCCCAACCTCCAGCAATGTCGGGCTaGATGTTCACAGCAGGAGTACTAGAAGCATGCACTGTAGGGGAA +
Preference number: 5 (lower is better)
Translates to: PPGLVCQSQPPAMSG*MFTAGVLEACTVGE
Trigger: TTCCCCTACAGTGCATGCTTCTAGTACTCCTGCTGTGAACATCCAGCCCGACATTGCTGGAGGTTGGGACTGGCACACCAAACCAGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTCTGACAGTGATTGCCTaGATCGTGAGTGGCTTGAAG +
Preference number: 5 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSLTVIA*IVSGLK
Trigger: CTTCAAGCCACTCACGATCAAGGCAATCACTGTCAG...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAACTCAGCAACTCAGAATaGCTGGGAGGAGCTGCCAAG +
Preference number: 5 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKLSNSE*LGGAAK
Trigger: CTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGAG...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTGGTGGCAGCGGATTaGCTCCCCATTCCAAAACCT +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQLVAAD*LPIPKP
Trigger: AGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCAG...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGTTGGGGTGGTAGGTTaGCTGGCAAATGAAGAGCTA +
Preference number: 5 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSVGVVG*LANEEL
Trigger: TAGCTCTTCATTTGCCAGCAAACCTACCACCCCAAC...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGTACACCTTCTTCACTaGCTCCGGCGTCACCAGATC +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQVHLLH*LRRHQI
Trigger: GATCTGGTGACGCCGGAGCAAGTGAAGAAGGTGTAC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCATAGGGTTGCCCAGTaGCCTTGTCAGGGTGCACCA +
Preference number: 5 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIHRVAQ*PCQGAP
Trigger: TGGTGCACCCTGACAAGGCAACTGGGCAACCCTATG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS TCA 90 bp TATTCCTACACACAGCAAACAGGTTGTGTAGACTTGGAGCCTGCCTaGTGGGCCAACTGCACTCTGAGACCCGGCTGTGGAACTTGGCAG +
Preference number: 5 (lower is better)
Translates to: YSYTQQTGCVDLEPA*WANCTLRPGCGTWQ
Trigger: CTGCCAAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGGCCCATCAGGCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTGTAGGAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS TCA 90 bp TATCTGTGTGTTGGTCACCTTCGCCTGCAGCCGGCTCCCGATGGTTaGCCGCAAGTGGTACATGGAAACGATGACATCACCTTGGACTGT +
Preference number: 5 (lower is better)
Translates to: YLCVGHLRLQPAPDG*PQVVHGNDDITLDC
Trigger: ACAGTCCAAGGTGATGTCATCGTTTCCATGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCAACACACAGATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS GCA 90 bp CTGTGGCACCTACACCCCCAAACAGGTCACTCAGCAACTCAGAATTaGTGGGAGGAGCTGCCAAGGAAGAGAAGTTCGTGCTCACATCAG +
Preference number: 5 (lower is better)
Translates to: LWHLHPQTGHSATQN*WEELPRKRSSCSHQ
Trigger: CTGATGTGAGCACGAACTTCTCTTCCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGAGTGACCTGTTTGGGGGTGTAGGTGCCACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCACACAGCAAACAGGTaGTGTAGACTTGGAGCCTGC +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQHTANR*CRLGAC
Trigger: GCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTG...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGCATCCAGCTCAGGCTaGGTGAACTTTAAAACTGTC +
Preference number: 5 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSASSSG*VNFKTV
Trigger: GACAGTTTTAAAGTTCACCAAGCCTGAGCTGGATGC...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTGGCAAAGAAGCCTCCTaGCCCAAGATTCCTGGGATG +
Preference number: 5 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIGKEAS*PKIPGM
Trigger: CATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGCC...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCTCAGCAACTCAGAATaGCTGGGAGGAGCTGCCAAG +
Preference number: 5 (lower is better)
Translates to: QIHWVGGTLTPQLASYPILSNSE*LGGAAK
Trigger: CTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGAG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCTGGTGGCAGCGGATTaGCTCCCCATTCCAAAACCT +
Preference number: 5 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTLVAAD*LPIPKP
Trigger: AGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCAG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS GCA 90 bp TTTTGCCTGGCTTCTTGGCTCCATGAGGCTTATCACCCTCTGCATTaGCATGGGGGCTGGAGAGAGTCAGTAGCTCATCATCTGACTGCT +
Preference number: 5 (lower is better)
Translates to: FCLASWLHEAYHPLH*HGGWRESVAHHLTA
Trigger: AGCAGTCAGATGATGAGCTACTGACTCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATAAGCCTCATGGAGCCAAGAAGCCAGGCAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS GCA 90 bp GGAGTACTAGAAGCATGCACTGTAGGGGAAGGGCTTCTCGTGGGCTaGAGAAAGGGGTCGCTAGAAGCACTGGATGTGTTTAGAAAGGAG +
Preference number: 5 (lower is better)
Translates to: GVLEACTVGEGLLVG*RKGSLEALDVFRKE
Trigger: CTCCTTTCTAAACACATCCAGTGCTTCTAGCGACCCCTTTCTGCAGCCCACGAGAAGCCCTTCCCCTACAGTGCATGCTTCTAGTACTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCACACAGCAAACAGGTaGTGTAGACTTGGAGCCTGC +
Preference number: 5 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTHTANR*CRLGAC
Trigger: GCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTGACAGTGATTGCCTaGATCGTGAGTGGCTTGAAG +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQLTVIA*IVSGLK
Trigger: CTTCAAGCCACTCACGATCAAGGCAATCACTGTCAG...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTTGGAATATCTGTGTGTaGGTCACCTTCGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTWNICV*VTFACS
Trigger: GCTGCAGGCGAAGGTGACCAACACACAGATATTCCA...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGGGCAAAGAAGCCTCCTaGCCCAAGATTCCTGGGATG +
Preference number: 5 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWGKEAS*PKIPGM
Trigger: CATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGCC...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGTTATCACCCTCTGCATaGCCATGGGGGCTGGAGAGA +
Preference number: 5 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWLSPSA*PWGLER
Trigger: TCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATAA...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGTTGGGGTGGTAGGTTaGCTGGCAAATGAAGAGCTA +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQVGVVG*LANEEL
Trigger: TAGCTCTTCATTTGCCAGCAAACCTACCACCCCAAC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTGTGTGCATTGAAGCCTaGACTAGAAAGCAGATCTTC +
Preference number: 5 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSVCIEA*TRKQIF
Trigger: GAAGATCTGCTTTCTAGTCAAGGCTTCAATGCACAC...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTGATGTTTCTCTCTTaGCCCTCTATCCACTCCAGG +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQLMFLS*PSIHSR
Trigger: CCTGGAGTGGATAGAGGGCAAAGAGAGAAACATCAG...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGTATTGTTCATAGGGTaGCCCAGTTGCCTTGTCAGG +
Preference number: 5 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKVLFIG*PSCLVR
Trigger: CCTGACAAGGCAACTGGGCAACCCTATGAACAATAC...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACGTATTGTTCATAGGGTaGCCCAGTTGCCTTGTCAGG +
Preference number: 5 (lower is better)
Translates to: VGFPKDRLECQDSARSAHVLFIG*PSCLVR
Trigger: CCTGACAAGGCAACTGGGCAACCCTATGAACAATAC...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS TCA 90 bp TCGCTAGAAGCACTGGATGTGTTTAGAAAGGAGCCCAACAAATCCTaGCCTGGTGGCTTAGCAGGGGCTCCAAAAGGGTCAAAGGTGGCA +
Preference number: 5 (lower is better)
Translates to: SLEALDVFRKEPNKS*PGGLAGAPKGSKVA
Trigger: TGCCACCTTTGACCCTTTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATTTGTTGGGCTCCTTTCTAAACACATCCAGTGCTTCTAGCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS GCA 90 bp TACATATTCCTACACACAGCAAACAGGTTGTGTAGACTTGGAGCCTaGCTGATGGGCCAACTGCACTCTGAGACCCGGCTGTGGAACTTG +
Preference number: 5 (lower is better)
Translates to: YIFLHTANRLCRLGA*LMGQLHSETRLWNL
Trigger: CAAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGGCCCATCAGGCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTGTAGGAATATGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGACAACACAGACATTTTaGGGGTTCTGCAGTAGCCAG +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQTTQTF*GFCSSQ
Trigger: CTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGT...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAGCATCCAGCTCAGGCTaGGTGAACTTTAAAACTGTC +
Preference number: 5 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKASSSG*VNFKTV
Trigger: GACAGTTTTAAAGTTCACCAAGCCTGAGCTGGATGC...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGGCATCCAGCTCAGGCTaGGTGAACTTTAAAACTGTC +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQASSSG*VNFKTV
Trigger: GACAGTTTTAAAGTTCACCAAGCCTGAGCTGGATGC...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCTCCCACTCTTAGGGTaGGCGATGCAGAGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQLPLLG*AMQRRR
Trigger: CCTCCGCCTCTGCATCGCCAACCCTAAGAGTGGGAG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTGTTGGGGTGGTAGGTTaGCTGGCAAATGAAGAGCTA +
Preference number: 5 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTVGVVG*LANEEL
Trigger: TAGCTCTTCATTTGCCAGCAAACCTACCACCCCAAC...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCTGATGTTTCTCTCTTaGCCCTCTATCCACTCCAGG +
Preference number: 5 (lower is better)
Translates to: QIHWVGGTLTPQLASYPILMFLS*PSIHSR
Trigger: CCTGGAGTGGATAGAGGGCAAAGAGAGAAACATCAG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCTGATGTTTCTCTCTTaGCCCTCTATCCACTCCAGG +
Preference number: 5 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTLMFLS*PSIHSR
Trigger: CCTGGAGTGGATAGAGGGCAAAGAGAGAAACATCAG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTCCCACGGGTTTCCATTaGGTCTCCCCAGCCCACAGC +
Preference number: 5 (lower is better)
Translates to: SELPPADVSLGKFHSCIVPTGFH*VSPAHS
Trigger: GCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGGG...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS GCA 90 bp TTTCCCTTCCAAGTTAGTAGATCCTTTTCCACGTTCGCTCTGCCCTaGAGGCATAGCCGAGAAGCTCACGTTGTAATTGGGTCGGTTCTG +
Preference number: 5 (lower is better)
Translates to: FPFQVSRSFSTFALP*RHSREAHVVIGSVL
Trigger: CAGAACCGACCCAATTACAACGTGAGCTTCTCGGCTATGCCTGCAGGGCAGAGCGAACGTGGAAAAGGATCTACTAACTTGGAAGGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CCCAGCAGTAGGAGCTGCTTCCCCTGCAAAGTGGGAAGCTCTGAGCACTGGAGTAGAGTGTCTTTCAAGTaGTCCTTCAGGTTACTGAAT +
Preference number: 5 (lower is better)
Translates to: PSSRSCFPCKVGSSEHWSRVSFK*SFRLLN
Trigger: ATTCAGTAACCTGAAGGACAACTTGAAAGACACTCT...ACTCCAGTGCTCAGAGCTTCCCACTTTGCAGGGGAAGCAGCTCCTACTGCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTCAATTCCTGGTCGCTTaGCGTAGAGTAATCGAACAG +
Preference number: 5 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIQFLVA*RRVIEQ
Trigger: CTGTTCGATTACTCTACGCAAAGCGACCAGGAATTG...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGCTGACAGTGATTGCCTaGATCGTGAGTGGCTTGAAG +
Preference number: 5 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWLTVIA*IVSGLK
Trigger: CTTCAAGCCACTCACGATCAAGGCAATCACTGTCAG...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACGTGTGCATTGAAGCCTaGACTAGAAAGCAGATCTTC +
Preference number: 5 (lower is better)
Translates to: VGFPKDRLECQDSARSAHVCIEA*TRKQIF
Trigger: GAAGATCTGCTTTCTAGTCAAGGCTTCAATGCACAC...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTGTTCGAGGCCCCTTTTaGTCTTTGTGTGCATTGAAG +
Preference number: 5 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTVRGPF*SLCALK
Trigger: CTTCAATGCACACAAAGACAAAAAGGGGCCTCGAAC...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAGATCCACTGGGTGGGTGGGACTCTGACTCCTCAACTGGCAAGCTATCCAATTGTTCGAGGCCCCTTTTaGTCTTTGTGTGCATTGAAG +
Preference number: 5 (lower is better)
Translates to: QIHWVGGTLTPQLASYPIVRGPF*SLCALK
Trigger: CTTCAATGCACACAAAGACAAAAAGGGGCCTCGAAC...AATTGGATAGCTTGCCAGTTGAGGAGTCAGAGTCCCACCCACCCAGTGGATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGTTCTCATCTCAGCTATaGTTCGAGGCCCCTTTTTGT +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQFSSQL*FEAPFC
Trigger: ACAAAAAGGGGCCTCGAACAATAGCTGAGATGAGAA...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAATTCTCATCTCAGCTATaGTTCGAGGCCCCTTTTTGT +
Preference number: 5 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKFSSQL*FEAPFC
Trigger: ACAAAAAGGGGCCTCGAACAATAGCTGAGATGAGAA...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTTCTCATCTCAGCTATaGTTCGAGGCCCCTTTTTGT +
Preference number: 5 (lower is better)
Translates to: VGFPKDRLECQDSARSAHFSSQL*FEAPFC
Trigger: ACAAAAAGGGGCCTCGAACAATAGCTGAGATGAGAA...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CCA 90 bp ACGACGCGGCCCGTCCATCCAAGCAGTGGACAACACAGACATTTTTaGGGTTCTGCAGTAGCCAGTTATACATATTCCTACACACAGCAA +
Preference number: 5 (lower is better)
Translates to: TTRPVHPSSGQHRHF*GSAVASYTYSYTQQ
Trigger: TTGCTGTGTGTAGGAATATGTATAACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGTCCACTGCTTGGATGGACGGGCCGCGTCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS-3UTR CAA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACCTGGAGGATGTATCTTaGAGAGTGTCTTTCAAGTTG +
Preference number: 5 (lower is better)
Translates to: VGFPKDRLECQDSARSAHLEDVS*RVSFKL
Trigger: CAACTTGAAAGACACTCTCAAAGATACATCCTCCAG...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGACAACACAGACATTTTaGGGGTTCTGCAGTAGCCAG +
Preference number: 5 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWTTQTF*GFCSSQ
Trigger: CTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGT...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCATAGGGTTGCCCAGTaGCCTTGTCAGGGTGCACCA +
Preference number: 5 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQHRVAQ*PCQGAP
Trigger: TGGTGCACCCTGACAAGGCAACTGGGCAACCCTATG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTCAAGGGCTTTTGGCCTaGGTTTTCAAATTCAGACCA +
Preference number: 5 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTQGLLA*VFKFRP
Trigger: TGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTTG...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CCA 90 bp TGCACTCTGAGACCCGGCTGTGGAACTTGGCAGTTCGGTAAGACTTaGGTGACAAGTTGTATACTGTGTAGTGGTCAAGATGTCTGGAAT +
Preference number: 5 (lower is better)
Translates to: CTLRPGCGTWQFGKT*VTSCILCSGQDVWN
Trigger: ATTCCAGACATCTTGACCACTACACAGTATACAACTTGTCACCCAAGTCTTACCGAACTGCCAAGTTCCACAGCCGGGTCTCAGAGTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS-3UTR CAA 90 bp GTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACAGAGTGTCTTTCAAGTaGTCCTTCAGGTTACTGAAT +
Preference number: 5 (lower is better)
Translates to: VGFPKDRLECQDSARSAHRVSFK*SFRLLN
Trigger: ATTCAGTAACCTGAAGGACAACTTGAAAGACACTCT...GTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAAAGAGTGTCTTTCAAGTaGTCCTTCAGGTTACTGAAT +
Preference number: 5 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKRVSFK*SFRLLN
Trigger: ATTCAGTAACCTGAAGGACAACTTGAAAGACACTCT...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCATGGAATATCTGTGTGTaGGTCACCTTCGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSWNICV*VTFACS
Trigger: GCTGCAGGCGAAGGTGACCAACACACAGATATTCCA...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAATATATCCAGTGTCACTaGGAACAGCTGAGGATATTT +
Preference number: 5 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKYIQCH*EQLRIF
Trigger: AAATATCCTCAGCTGTTCCAAGTGACACTGGATATA...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGTATATCCAGTGTCACTaGGAACAGCTGAGGATATTT +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQYIQCH*EQLRIF
Trigger: AAATATCCTCAGCTGTTCCAAGTGACACTGGATATA...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGGGCAAAGAAGCCTCCTaGCCCAAGATTCCTGGGATG +
Preference number: 5 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQGKEAS*PKIPGM
Trigger: CATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGCC...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTCTCCCACTCTTAGGGTaGGCGATGCAGAGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRLPLLG*AMQRRR
Trigger: CCTCCGCCTCTGCATCGCCAACCCTAAGAGTGGGAG...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CATAGTTTTCACATGCATCCAACAGCAAACCCAGCGGAGATAATCCCGGGGTGGGTGTGCATTGAAGCCTaGACTAGAAAGCAGATCTTC +
Preference number: 5 (lower is better)
Translates to: HSFHMHPTANPAEIIPGWVCIEA*TRKQIF
Trigger: GAAGATCTGCTTTCTAGTCAAGGCTTCAATGCACAC...CCACCCCGGGATTATCTCCGCTGGGTTTGCTGTTGGATGCATGTGAAAACTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACACCCACGGGTTTCCATTaGGTCTCCCCAGCCCACAGC +
Preference number: 5 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTPTGFH*VSPAHS
Trigger: GCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGGG...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGTACACCTTCTTCACTaGCTCCGGCGTCACCAGATC +
Preference number: 5 (lower is better)
Translates to: SELPPADVSLGKFHSCIVVHLLH*LRRHQI
Trigger: GATCTGGTGACGCCGGAGCAAGTGAAGAAGGTGTAC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS GCA 90 bp GCCCGTCCATCCAAGCAGTGGACAACACAGACATTTTTGGGGTTCTaGAGTAGCCAGTTATACATATTCCTACACACAGCAAACAGGTTG +
Preference number: 5 (lower is better)
Translates to: ARPSKQWTTQTFLGF*SSQLYIFLHTANRL
Trigger: CAACCTGTTTGCTGTGTGTAGGAATATGTATAACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGTCCACTGCTTGGATGGACGGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS CCA 90 bp CCGATGGTTGACCGCAAGTGGTACATGGAAACGATGACATCACCTTaGACTGTGATGTTCAGAGGGATGAAGATTTTCCCATCTTGGACA +
Preference number: 5 (lower is better)
Translates to: PMVDRKWYMETMTSP*TVMFRGMKIFPSWT
Trigger: TGTCCAAGATGGGAAAATCTTCATCCCTCTGAACATCACAGTCCAAGGTGATGTCATCGTTTCCATGTACCACTTGCGGTCAACCATCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS-3UTR CAA 90 bp TCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGCTCACTAGAGTGTCTTTCAAGTaGTCCTTCAGGTTACTGAAT +
Preference number: 5 (lower is better)
Translates to: SASQRTGWNVKTLQGQLTRVSFK*SFRLLN
Trigger: ATTCAGTAACCTGAAGGACAACTTGAAAGACACTCT...AGTGAGCTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCACACAGCAAACAGGTaGTGTAGACTTGGAGCCTGC +
Preference number: 5 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQHTANR*CRLGAC
Trigger: GCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGTGGAATATCTGTGTGTaGGTCACCTTCGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQWNICV*VTFACS
Trigger: GCTGCAGGCGAAGGTGACCAACACACAGATATTCCA...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTGGCAAAGAAGCCTCCTaGCCCAAGATTCCTGGGATG +
Preference number: 5 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCGKEAS*PKIPGM
Trigger: CATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGCC...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTTATCACCCTCTGCATaGCCATGGGGGCTGGAGAGA +
Preference number: 5 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCLSPSA*PWGLER
Trigger: TCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATAA...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp TTGGGTGGCCGAGGTCCTATTTCCCCAGGCAAAATGCTGAGTCGGCTTCCCAAATTAATACAAGGGCTTTaGGCCTTGGTTTTCAAATTC +
Preference number: 5 (lower is better)
Translates to: LGGRGPISPGKMLSRLPKLIQGL*ALVFKF
Trigger: GAATTTGAAAACCAAGGCCAAAAGCCCTTGTATTAA...TTTGGGAAGCCGACTCAGCATTTTGCCTGGGGAAATAGGACCTCGGCCACCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCTGAGTCGGCTTCCCAAAGGACAGGCTGGAATGTCAAGACTCTGCAAGGTCAGTTAATACAAGGGCTTTaGGCCTTGGTTTTCAAATTC +
Preference number: 5 (lower is better)
Translates to: AESASQRTGWNVKTLQGQLIQGL*ALVFKF
Trigger: GAATTTGAAAACCAAGGCCAAAAGCCCTTGTATTAA...CTGACCTTGCAGAGTCTTGACATTCCAGCCTGTCCTTTGGGAAGCCGACTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS TCA 90 bp TTGTCTTGGGGCTGGACTTCTATATCCAGTGTCACTTGGAACAGCTaGGGATATTTTTCTGGTACATCACATGCATCCAGCTCAGGCTTG +
Preference number: 5 (lower is better)
Translates to: LSWGWTSISSVTWNS*GYFSGTSHASSSGL
Trigger: CAAGCCTGAGCTGGATGCATGTGATGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGACACTGGATATAGAAGTCCAGCCCCAAGACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS-3UTR CAA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACAATTCCTGGTCGCTTaGCGTAGAGTAATCGAACAG +
Preference number: 5 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSQFLVA*RRVIEQ
Trigger: CTGTTCGATTACTCTACGCAAAGCGACCAGGAATTG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCAGCATCCAGCTCAGGCTaGGTGAACTTTAAAACTGTC +
Preference number: 5 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSASSSG*VNFKTV
Trigger: GACAGTTTTAAAGTTCACCAAGCCTGAGCTGGATGC...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTTATCACCCTCTGCATaGCCATGGGGGCTGGAGAGA +
Preference number: 5 (lower is better)
Translates to: LMATIRRGFQIGLELWWWLSPSA*PWGLER
Trigger: TCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATAA...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCTTATCACCCTCTGCATaGCCATGGGGGCTGGAGAGA +
Preference number: 5 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCLSPSA*PWGLER
Trigger: TCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATAA...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGCTGGTGGCAGCGGATTaGCTCCCCATTCCAAAACCT +
Preference number: 5 (lower is better)
Translates to: LMATIRRGFQIGLELWWWLVAAD*LPIPKP
Trigger: AGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCAG...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGGTTGGGGTGGTAGGTTaGCTGGCAAATGAAGAGCTA +
Preference number: 5 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQVGVVG*LANEEL
Trigger: TAGCTCTTCATTTGCCAGCAAACCTACCACCCCAAC...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGGTACACCTTCTTCACTaGCTCCGGCGTCACCAGATC +
Preference number: 5 (lower is better)
Translates to: LSLMATIRRGFQIGLELWVHLLH*LRRHQI
Trigger: GATCTGGTGACGCCGGAGCAAGTGAAGAAGGTGTAC...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGTATTGTTCATAGGGTaGCCCAGTTGCCTTGTCAGG +
Preference number: 5 (lower is better)
Translates to: SELPPADVSLGKFHSCIVVLFIG*PSCLVR
Trigger: CCTGACAAGGCAACTGGGCAACCCTATGAACAATAC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGCACACAGCAAACAGGTaGTGTAGACTTGGAGCCTGC +
Preference number: 5 (lower is better)
Translates to: LSLMATIRRGFQIGLELWHTANR*CRLGAC
Trigger: GCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTG...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTACAACACAGACATTTTaGGGGTTCTGCAGTAGCCAG +
Preference number: 5 (lower is better)
Translates to: SELPPADVSLGKFHSCIVTTQTF*GFCSSQ
Trigger: CTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGT...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTCTGACAGTGATTGCCTaGATCGTGAGTGGCTTGAAG +
Preference number: 5 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCLTVIA*IVSGLK
Trigger: CTTCAAGCCACTCACGATCAAGGCAATCACTGTCAG...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGAATATCTGTGTGTaGGTCACCTTCGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: LSLMATIRRGFQIGLELWWNICV*VTFACS
Trigger: GCTGCAGGCGAAGGTGACCAACACACAGATATTCCA...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTGCATCCAGCTCAGGCTaGGTGAACTTTAAAACTGTC +
Preference number: 5 (lower is better)
Translates to: SELPPADVSLGKFHSCIVASSSG*VNFKTV
Trigger: GACAGTTTTAAAGTTCACCAAGCCTGAGCTGGATGC...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTGGCAAAGAAGCCTCCTaGCCCAAGATTCCTGGGATG +
Preference number: 5 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRGKEAS*PKIPGM
Trigger: CATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGCC...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTCTCAGCAACTCAGAATaGCTGGGAGGAGCTGCCAAG +
Preference number: 5 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRLSNSE*LGGAAK
Trigger: CTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGAG...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCAGTGTGCATTGAAGCCTaGACTAGAAAGCAGATCTTC +
Preference number: 5 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSVCIEA*TRKQIF
Trigger: GAAGATCTGCTTTCTAGTCAAGGCTTCAATGCACAC...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACAGTACACCTTCTTCACTaGCTCCGGCGTCACCAGATC +
Preference number: 5 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTVHLLH*LRRHQI
Trigger: GATCTGGTGACGCCGGAGCAAGTGAAGAAGGTGTAC...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GAATGCCAGGTCTATACAAAGTGTGAATGGGCCAAGCTGCTTTGCAAACTGTCACTGGAGGATGTATCTTaGAGAGTGTCTTTCAAGTTG +
Preference number: 5 (lower is better)
Translates to: ECQVYTKCEWAKLLCKLSLEDVS*RVSFKL
Trigger: CAACTTGAAAGACACTCTCAAAGATACATCCTCCAG...TGACAGTTTGCAAAGCAGCTTGGCCCATTCACACTTTGTATAGACCTGGCATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTCAATTCCTGGTCGCTTaGCGTAGAGTAATCGAACAG +
Preference number: 5 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCQFLVA*RRVIEQ
Trigger: CTGTTCGATTACTCTACGCAAAGCGACCAGGAATTG...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTTGGAATATCTGTGTGTaGGTCACCTTCGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRWNICV*VTFACS
Trigger: GCTGCAGGCGAAGGTGACCAACACACAGATATTCCA...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGACTGGTGGCAGCGGATTaGCTCCCCATTCCAAAACCT +
Preference number: 5 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRLVAAD*LPIPKP
Trigger: AGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCAG...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTTTCTCATCTCAGCTATaGTTCGAGGCCCCTTTTTGT +
Preference number: 5 (lower is better)
Translates to: SELPPADVSLGKFHSCIVFSSQL*FEAPFC
Trigger: ACAAAAAGGGGCCTCGAACAATAGCTGAGATGAGAA...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCGTATTGTTCATAGGGTaGCCCAGTTGCCTTGTCAGG +
Preference number: 5 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCVLFIG*PSCLVR
Trigger: CCTGACAAGGCAACTGGGCAACCCTATGAACAATAC...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGCAAGGGCTTTTGGCCTaGGTTTTCAAATTCAGACCA +
Preference number: 5 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQQGLLA*VFKFRP
Trigger: TGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTTG...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACAACACAGACATTTTaGGGGTTCTGCAGTAGCCAG +
Preference number: 5 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCTTQTF*GFCSSQ
Trigger: CTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGT...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGACAACACAGACATTTTaGGGGTTCTGCAGTAGCCAG +
Preference number: 5 (lower is better)
Translates to: LMATIRRGFQIGLELWWWTTQTF*GFCSSQ
Trigger: CTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGT...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCAATTCCTGGTCGCTTaGCGTAGAGTAATCGAACAG +
Preference number: 5 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCQFLVA*RRVIEQ
Trigger: CTGTTCGATTACTCTACGCAAAGCGACCAGGAATTG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACAGTTGGGGTGGTAGGTTaGCTGGCAAATGAAGAGCTA +
Preference number: 5 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTVGVVG*LANEEL
Trigger: TAGCTCTTCATTTGCCAGCAAACCTACCACCCCAAC...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGGTTCGAGGCCCCTTTTaGTCTTTGTGTGCATTGAAG +
Preference number: 5 (lower is better)
Translates to: LMATIRRGFQIGLELWWWVRGPF*SLCALK
Trigger: CTTCAATGCACACAAAGACAAAAAGGGGCCTCGAAC...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS TCA 90 bp TTTGGCCTTGGTTTTCAAATTCAGACCAGGCATCATTTAGCTCCATaGAAATCATCTTTGCGTATTGTTCATAGGGTTGCCCAGTTGCCT +
Preference number: 5 (lower is better)
Translates to: FGLGFQIQTRHHLAP*KSSLRIVHRVAQLP
Trigger: AGGCAACTGGGCAACCCTATGAACAATACGCAAAGATGATTTTCATGGAGCTAAATGATGCCTGGTCTGAATTTGAAAACCAAGGCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp ACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTCTGGAGGATGTATCTTaGAGAGTGTCTTTCAAGTTG +
Preference number: 5 (lower is better)
Translates to: TVTTWYLKGTQNLLVCTCLEDVS*RVSFKL
Trigger: CAACTTGAAAGACACTCTCAAAGATACATCCTCCAG...ACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGACTGACAGTGATTGCCTaGATCGTGAGTGGCTTGAAG +
Preference number: 5 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRLTVIA*IVSGLK
Trigger: CTTCAAGCCACTCACGATCAAGGCAATCACTGTCAG...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGGTGTGCATTGAAGCCTaGACTAGAAAGCAGATCTTC +
Preference number: 5 (lower is better)
Translates to: LSLMATIRRGFQIGLELWVCIEA*TRKQIF
Trigger: GAAGATCTGCTTTCTAGTCAAGGCTTCAATGCACAC...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTTCTCATCTCAGCTATaGTTCGAGGCCCCTTTTTGT +
Preference number: 5 (lower is better)
Translates to: LMATIRRGFQIGLELWWWFSSQL*FEAPFC
Trigger: ACAAAAAGGGGCCTCGAACAATAGCTGAGATGAGAA...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGAACCTATTGGTCTGCCAAGGGCTTTTGGCCTaGGTTTTCAAATTCAGACCA +
Preference number: 5 (lower is better)
Translates to: QQTVTTWYLKGTQNLLVCQGLLA*VFKFRP
Trigger: TGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTTG...GCAGACCAATAGGTTCTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGCTGGAGGATGTATCTTaGAGAGTGTCTTTCAAGTTG +
Preference number: 5 (lower is better)
Translates to: LMATIRRGFQIGLELWWWLEDVS*RVSFKL
Trigger: CAACTTGAAAGACACTCTCAAAGATACATCCTCCAG...CCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTGGTGGTATCGTCAAGGGCTTTTGGCCTaGGTTTTCAAATTCAGACCA +
Preference number: 5 (lower is better)
Translates to: ATIRRGFQIGLELWWWYRQGLLA*VFKFRP
Trigger: TGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTTG...ACGATACCACCACCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AGTGAACTGCCACCAGCTGATGTCAGTCTGGGAAAGTTTCATTCTTGCATAGTTTTAATACAAGGGCTTTaGGCCTTGGTTTTCAAATTC +
Preference number: 5 (lower is better)
Translates to: SELPPADVSLGKFHSCIVLIQGL*ALVFKF
Trigger: GAATTTGAAAACCAAGGCCAAAAGCCCTTGTATTAA...AACTATGCAAGAATGAAACTTTCCCAGACTGACATCAGCTGGTGGCAGTTCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GGTGGATCTGGCCAACAACAAACTGTCACAACCTGGTATTTAAAAGGAACACAGTTAATACAAGGGCTTTaGGCCTTGGTTTTCAAATTC +
Preference number: 5 (lower is better)
Translates to: GGSGQQQTVTTWYLKGTQLIQGL*ALVFKF
Trigger: GAATTTGAAAACCAAGGCCAAAAGCCCTTGTATTAA...CTGTGTTCCTTTTAAATACCAGGTTGTGACAGTTTGTTGTTGGCCAGATCCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGAGAGTGTCTTTCAAGTaGTCCTTCAGGTTACTGAAT +
Preference number: 5 (lower is better)
Translates to: LSLMATIRRGFQIGLELWRVSFK*SFRLLN
Trigger: ATTCAGTAACCTGAAGGACAACTTGAAAGACACTCT...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACACTGGAGGATGTATCTTaGAGAGTGTCTTTCAAGTTG +
Preference number: 5 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTLEDVS*RVSFKL
Trigger: CAACTTGAAAGACACTCTCAAAGATACATCCTCCAG...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp AAAACAGGTCACAGCAACATGTCTCACATTCCAATCTTAAATAGGACAAGCACATATATCCAGTGTCACTaGGAACAGCTGAGGATATTT +
Preference number: 5 (lower is better)
Translates to: KTGHSNMSHIPILNRTSTYIQCH*EQLRIF
Trigger: AAATATCCTCAGCTGTTCCAAGTGACACTGGATATA...TGTGCTTGTCCTATTTAAGATTGGAATGTGAGACATGTTGCTGTGACCTGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp CTGAGCCTCATGGCAACAATTAGAAGGGGATTTCAAATAGGTTTGGAATTATGGTTAATACAAGGGCTTTaGGCCTTGGTTTTCAAATTC +
Preference number: 5 (lower is better)
Translates to: LSLMATIRRGFQIGLELWLIQGL*ALVFKF
Trigger: GAATTTGAAAACCAAGGCCAAAAGCCCTTGTATTAA...CCATAATTCCAAACCTATTTGAAATCCCCTTCTAATTGTTGCCATGAGGCTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS-3UTR CAA 90 bp GTATTTAAAAGGAACACAGAACCTATTGGTCTGCACGTGTTAAGAGTTTTGAGATATATCCAGTGTCACTaGGAACAGCTGAGGATATTT +
Preference number: 5 (lower is better)
Translates to: VFKRNTEPIGLHVLRVLRYIQCH*EQLRIF
Trigger: AAATATCCTCAGCTGTTCCAAGTGACACTGGATATA...TCTCAAAACTCTTAACACGTGCAGACCAATAGGTTCTGTGTTCCTTTTAAATAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS TCA 72 bp GCACCCCGGAGAGCCGATCGCATCCTCCGCAGCCGCTaGTCCGCGCGCCACCGCCGCAGCACCGACAGCAGC +
Preference number: 6 (lower is better)
Translates to: APRRADRILRSR*SARHRRSTDSS
Trigger: GCTGCTGTCGGTGCTGCGGCGGTGGCGCGCGGATCAGCGGCTGCGGAGGATGCGATCGGCTCTCCGGGGTGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154120.9
CDS GCA 72 bp CGCGGTCGCCCTCTGCGTGCCAGCCGCCGCGCCCCGTaGGCTCGAGTCCCCGTGACTGTCCACCAGCTGCAA +
Preference number: 6 (lower is better)
Translates to: RGRPLRASRRAP*ARVPVTVHQLQ
Trigger: TTGCAGCTGGTGGACAGTCACGGGGACTCGAGCGCACGGGGCGCGGCGGCTGGCACGCAGAGGGCGACCGCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106933.2
CDS CCA 72 bp TGTCTGGAGACGAGGCACCTGAGCTGTCCGTGGTGCTaGCGCGGTGCGGAGGCTGCCGGGCGGGACTACGCA +
Preference number: 6 (lower is better)
Translates to: CLETRHLSCPWC*RGAEAAGRDYA
Trigger: TGCGTAGTCCCGCCCGGCAGCCTCCGCACCGCGCCAGCACCACGGACAGCTCAGGTGCCTCGTCTCCAGACA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106933.2
CDS GCA 72 bp GATCCAGAGTCTGGGGCTTGCTCTGATGGGTGGGGGTaGCATGTGATGAGCCTGTCGGGCTGGTGGCAGCGG +
Preference number: 6 (lower is better)
Translates to: DPESGACSDGWG*HVMSLSGWWQR
Trigger: CCGCTGCCACCAGCCCGACAGGCTCATCACATGGCACCCCCACCCATCAGAGCAAGCCCCAGACTCTGGATC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CCA 72 bp CTCCCACTCTTAGGGTTGGCGATGCAGAGGCGGAGGTaGCGGTTCGGCGCGGTGTGGACTGTGCAGACACAG +
Preference number: 6 (lower is better)
Translates to: LPLLGLAMQRRR*RFGAVWTVQTQ
Trigger: CTGTGTCTGCACAGTCCACACCGCGCCGAACCGCCACCTCCGCCTCTGCATCGCCAACCCTAAGAGTGGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CCA 72 bp CGAAGGGATCCAGAGTCTGGGGCTTGCTCTGATGGGTaGGGGTGCCATGTGATGAGCCTGTCGGGCTGGTGG +
Preference number: 6 (lower is better)
Translates to: RRDPESGACSDG*GCHVMSLSGWW
Trigger: CCACCAGCCCGACAGGCTCATCACATGGCACCCCCACCCATCAGAGCAAGCCCCAGACTCTGGATCCCTTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CAA 72 bp AAGGGTCAAAGGTGGCACCTTCTCCCACTCTTAGGGTaGGCGATGCAGAGGCGGAGGTGGCGGTTCGGCGCG +
Preference number: 6 (lower is better)
Translates to: KGQRWHLLPLLG*AMQRRRWRFGA
Trigger: CGCGCCGAACCGCCACCTCCGCCTCTGCATCGCCAACCCTAAGAGTGGGAGAAGGTGCCACCTTTGACCCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS TCA 72 bp AGGTCAGCGAAGGGATCCAGAGTCTGGGGCTTGCTCTaGTGGGTGGGGGTGCCATGTGATGAGCCTGTCGGG +
Preference number: 6 (lower is better)
Translates to: RSAKGSRVWGLL*WVGVPCDEPVG
Trigger: CCCGACAGGCTCATCACATGGCACCCCCACCCATCAGAGCAAGCCCCAGACTCTGGATCCCTTCGCTGACCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS GCA 72 bp AGAGGCGGAGGTGGCGGTTCGGCGCGGTGTGGACTGTaGAGACACAGGTCCACTAGGATGAAACACATCTTC +
Preference number: 6 (lower is better)
Translates to: RGGGGGSARCGL*RHRSTRMKHIF
Trigger: GAAGATGTGTTTCATCCTAGTGGACCTGTGTCTGCACAGTCCACACCGCGCCGAACCGCCACCTCCGCCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS TCA 72 bp GTTGGTCACCTTCGCCTGCAGCCGGCTCCCGATGGTTaGCCGCAAGTGGTACATGGAAACGATGACATCACC +
Preference number: 6 (lower is better)
Translates to: VGHLRLQPAPDG*PQVVHGNDDIT
Trigger: GGTGATGTCATCGTTTCCATGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS CCA 72 bp TCGGTTCTGAGGGGAGGAGTGAGGCATACTGGACTGTaGCTTAGACTGTGTCTGCTGCCAGTTGTAGCCGGC +
Preference number: 6 (lower is better)
Translates to: SVLRGGVRHTGL*LRLCLLPVVAG
Trigger: GCCGGCTACAACTGGCAGCAGACACAGTCTAAGCCACAGTCCAGTATGCCTCACTCCTCCCCTCAGAACCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CCA 72 bp CGCCTTTCACCATGTCAAAAAGGCCTCCCCCATAGCTaGGCTCCATGTCTGGAGACGAGGCACCTGAGCTGT +
Preference number: 6 (lower is better)
Translates to: RLSPCQKGLPHS*APCLETRHLSC
Trigger: ACAGCTCAGGTGCCTCGTCTCCAGACATGGAGCCCAGCTATGGGGGAGGCCTTTTTGACATGGTGAAAGGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000106933.2
CDS CAA 72 bp CCATGTGATGAGCCTGTCGGGCTGGTGGCAGCGGATTaGCTCCCCATTCCAAAACCTCCTGGTTTGGTGTGC +
Preference number: 6 (lower is better)
Translates to: PCDEPVGLVAAD*LPIPKPPGLVC
Trigger: GCACACCAAACCAGGAGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCAGCCCGACAGGCTCATCACATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS TCA 72 bp ACACAGCAAACAGGTTGTGTAGACTTGGAGCCTGCCTaGTGGGCCAACTGCACTCTGAGACCCGGCTGTGGA +
Preference number: 6 (lower is better)
Translates to: TQQTGCVDLEPA*WANCTLRPGCG
Trigger: TCCACAGCCGGGTCTCAGAGTGCAGTTGGCCCATCAGGCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS GCA 72 bp CTACACACAGCAAACAGGTTGTGTAGACTTGGAGCCTaGCTGATGGGCCAACTGCACTCTGAGACCCGGCTG +
Preference number: 6 (lower is better)
Translates to: LHTANRLCRLGA*LMGQLHSETRL
Trigger: CAGCCGGGTCTCAGAGTGCAGTTGGCCCATCAGGCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS CCA 72 bp TTCGCCTGCAGCCGGCTCCCGATGGTTGACCGCAAGTaGTACATGGAAACGATGACATCACCTTGGACTGTG +
Preference number: 6 (lower is better)
Translates to: FACSRLPMVDRK*YMETMTSPWTV
Trigger: CACAGTCCAAGGTGATGTCATCGTTTCCATGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGCAGGCGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS CAA 72 bp TCCTGTGAGACGGAGACAGTCCAATTCCTGGTCGCTTaGCGTAGAGTAATCGAACAGCAGGGCCAGGCGTGG +
Preference number: 6 (lower is better)
Translates to: SCETETVQFLVA*RRVIEQQGQAW
Trigger: CCACGCCTGGCCCTGCTGTTCGATTACTCTACGCAAAGCGACCAGGAATTGGACTGTCTCCGTCTCACAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS CCA 72 bp GGGAACTGGGCTGACAGTGATTGCCTTGATCGTGAGTaGCTTGAAGTGAGGGCGGTAGGGCTTATCTGCAAG +
Preference number: 6 (lower is better)
Translates to: GNWADSDCLDRE*LEVRAVGLICK
Trigger: CTTGCAGATAAGCCCTACCGCCCTCACTTCAAGCCACTCACGATCAAGGCAATCACTGTCAGCCCAGTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS CAA 90 bp CTGAGAGGTGGAAATCCTCCACCCAATCCAGTTGGGGTGGTAGGTTaGCTGGCAAATGAAGAGCTACCTAGTGTCCCCAGGTCAGCGAAG +
Preference number: 6 (lower is better)
Translates to: LRGGNPPPNPVGVVG*LANEELPSVPRSAK
Trigger: CTTCGCTGACCTGGGGACACTAGGTAGCTCTTCATTTGCCAGCAAACCTACCACCCCAACTGGATTGGGTGGAGGATTTCCACCTCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS GCA 72 bp GCTTCTTGGCTCCATGAGGCTTATCACCCTCTGCATTaGCATGGGGGCTGGAGAGAGTCAGTAGCTCATCAT +
Preference number: 6 (lower is better)
Translates to: ASWLHEAYHPLH*HGGWRESVAHH
Trigger: ATGATGAGCTACTGACTCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATAAGCCTCATGGAGCCAAGAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS GCA 72 bp GACTGTCCACCAGCTGCAAAGATTCATAACCATCGCTaGTGGTCTTTTTCCGGTAGCTCCCGAGGAGGCTCA +
Preference number: 6 (lower is better)
Translates to: DCPPAAKIHNHR*WSFSGSSRGGS
Trigger: TGAGCCTCCTCGGGAGCTACCGGAAAAAGACCAGCAGCGATGGTTATGAATCTTTGCAGCTGGTGGACAGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106933.2
CDS CCA 72 bp TTGGTGTGCCAGTCCCAACCTCCAGCAATGTCGGGCTaGATGTTCACAGCAGGAGTACTAGAAGCATGCACT +
Preference number: 6 (lower is better)
Translates to: LVCQSQPPAMSG*MFTAGVLEACT
Trigger: AGTGCATGCTTCTAGTACTCCTGCTGTGAACATCCAGCCCGACATTGCTGGAGGTTGGGACTGGCACACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CAA 72 bp GGAAATCCTCCACCCAATCCAGTTGGGGTGGTAGGTTaGCTGGCAAATGAAGAGCTACCTAGTGTCCCCAGG +
Preference number: 6 (lower is better)
Translates to: GNPPPNPVGVVG*LANEELPSVPR
Trigger: CCTGGGGACACTAGGTAGCTCTTCATTTGCCAGCAAACCTACCACCCCAACTGGATTGGGTGGAGGATTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CAA 90 bp CTAAGTACCTCCTGTGAGACGGAGACAGTCCAATTCCTGGTCGCTTaGCGTAGAGTAATCGAACAGCAGGGCCAGGCGTGGAGTAGAGAT +
Preference number: 6 (lower is better)
Translates to: LSTSCETETVQFLVA*RRVIEQQGQAWSRD
Trigger: ATCTCTACTCCACGCCTGGCCCTGCTGTTCGATTACTCTACGCAAAGCGACCAGGAATTGGACTGTCTCCGTCTCACAGGAGGTACTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS CCA 72 bp CGCCTTTCACCATGTCAAAAAGGCCTCCCCCATAGCTaGGCTCCATGTCTGGAGACGAGGCACCTTTATTTT +
Preference number: 6 (lower is better)
Translates to: RLSPCQKGLPHS*APCLETRHLYF
Trigger: AAAATAAAGGTGCCTCGTCTCCAGACATGGAGCCCAGCTATGGGGGAGGCCTTTTTGACATGGTGAAAGGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038207.12
CDS CCA 72 bp TGGGCCAACTGCACTCTGAGACCCGGCTGTGGAACTTaGCAGTTCGGTAAGACTTGGGTGACAAGTTGTATA +
Preference number: 6 (lower is better)
Translates to: WANCTLRPGCGT*QFGKTWVTSCI
Trigger: TATACAACTTGTCACCCAAGTCTTACCGAACTGCCAAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS CAA 90 bp GACGACGCGGCCCGTCCATCCAAGCAGTGGACAACACAGACATTTTaGGGGTTCTGCAGTAGCCAGTTATACATATTCCTACACACAGCA +
Preference number: 6 (lower is better)
Translates to: DDAARPSKQWTTQTF*GFCSSQLYIFLHTA
Trigger: TGCTGTGTGTAGGAATATGTATAACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGTCCACTGCTTGGATGGACGGGCCGCGTCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS TCA 72 bp GAGATTACAGAAAATGAACATAGCACCAACCAGGATTaGCGACGCGGCCCGTCCATCCAAGCAGTGGACAAC +
Preference number: 6 (lower is better)
Translates to: EITENEHSTNQD*RRGPSIQAVDN
Trigger: GTTGTCCACTGCTTGGATGGACGGGCCGCGTCGTCAATCCTGGTTGGTGCTATGTTCATTTTCTGTAATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS GCA 72 bp CTGCTTATTGAAGAAGGGAACTGGGCTGACAGTGATTaGCTTGATCGTGAGTGGCTTGAAGTGAGGGCGGTA +
Preference number: 6 (lower is better)
Translates to: LLIEEGNWADSD*LDREWLEVRAV
Trigger: TACCGCCCTCACTTCAAGCCACTCACGATCAAGGCAATCACTGTCAGCCCAGTTCCCTTCTTCAATAAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS GCA 72 bp CAAGTTAGTAGATCCTTTTCCACGTTCGCTCTGCCCTaGAGGCATAGCCGAGAAGCTCACGTTGTAATTGGG +
Preference number: 6 (lower is better)
Translates to: QVSRSFSTFALP*RHSREAHVVIG
Trigger: CCCAATTACAACGTGAGCTTCTCGGCTATGCCTGCAGGGCAGAGCGAACGTGGAAAAGGATCTACTAACTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CAA 72 bp AAATCATCTTTGCGTATTGTTCATAGGGTTGCCCAGTaGCCTTGTCAGGGTGCACCACTAGCACAGCCCTCC +
Preference number: 6 (lower is better)
Translates to: KSSLRIVHRVAQ*PCQGAPLAQPS
Trigger: GGAGGGCTGTGCTAGTGGTGCACCCTGACAAGGCAACTGGGCAACCCTATGAACAATACGCAAAGATGATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CAA 90 bp TTCTGCAGTAGCCAGTTATACATATTCCTACACACAGCAAACAGGTaGTGTAGACTTGGAGCCTGCCTGATGGGCCAACTGCACTCTGAG +
Preference number: 6 (lower is better)
Translates to: FCSSQLYIFLHTANR*CRLGACLMGQLHSE
Trigger: CTCAGAGTGCAGTTGGCCCATCAGGCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTGTAGGAATATGTATAACTGGCTACTGCAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS TCA 72 bp CCGGCTGTGGAACTTGGCAGTTCGGTAAGACTTGGGTaGCAAGTTGTATACTGTGTAGTGGTCAAGATGTCT +
Preference number: 6 (lower is better)
Translates to: PAVELGSSVRLG*QVVYCVVVKMS
Trigger: AGACATCTTGACCACTACACAGTATACAACTTGTCACCCAAGTCTTACCGAACTGCCAAGTTCCACAGCCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS CCA 72 bp AGACCCGGCTGTGGAACTTGGCAGTTCGGTAAGACTTaGGTGACAAGTTGTATACTGTGTAGTGGTCAAGAT +
Preference number: 6 (lower is better)
Translates to: RPGCGTWQFGKT*VTSCILCSGQD
Trigger: ATCTTGACCACTACACAGTATACAACTTGTCACCCAAGTCTTACCGAACTGCCAAGTTCCACAGCCGGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS CAA 72 bp AGCCAGTTATACATATTCCTACACACAGCAAACAGGTaGTGTAGACTTGGAGCCTGCCTGATGGGCCAACTG +
Preference number: 6 (lower is better)
Translates to: SQLYIFLHTANR*CRLGACLMGQL
Trigger: CAGTTGGCCCATCAGGCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTGTAGGAATATGTATAACTGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS CCA 72 bp CCCGTCCATCCAAGCAGTGGACAACACAGACATTTTTaGGGTTCTGCAGTAGCCAGTTATACATATTCCTAC +
Preference number: 6 (lower is better)
Translates to: PVHPSSGQHRHF*GSAVASYTYSY
Trigger: GTAGGAATATGTATAACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGTCCACTGCTTGGATGGACGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS CCA 72 bp TGTTCCCATGGTGGAGTTAAGTCGATCACTTTGTCTTaGGGCTGGACTTCTATATCCAGTGTCACTTGGAAC +
Preference number: 6 (lower is better)
Translates to: CSHGGVKSITLS*GWTSISSVTWN
Trigger: GTTCCAAGTGACACTGGATATAGAAGTCCAGCCCCAAGACAAAGTGATCGACTTAACTCCACCATGGGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS CAA 72 bp GCCCGTCCATCCAAGCAGTGGACAACACAGACATTTTaGGGGTTCTGCAGTAGCCAGTTATACATATTCCTA +
Preference number: 6 (lower is better)
Translates to: ARPSKQWTTQTF*GFCSSQLYIFL
Trigger: TAGGAATATGTATAACTGGCTACTGCAGAACCCCAAAAATGTCTGTGTTGTCCACTGCTTGGATGGACGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS CAA 90 bp GTCGATCACTTTGTCTTGGGGCTGGACTTCTATATCCAGTGTCACTaGGAACAGCTGAGGATATTTTTCTGGTACATCACATGCATCCAG +
Preference number: 6 (lower is better)
Translates to: VDHFVLGLDFYIQCH*EQLRIFFWYITCIQ
Trigger: CTGGATGCATGTGATGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGACACTGGATATAGAAGTCCAGCCCCAAGACAAAGTGATCGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS CAA 90 bp AGCACGGTGTGCATTGTGGAAAGCAGAGCTCTGATGTTTCTCTCTTaGCCCTCTATCCACTCCAGGATCTTTAGTTTTTCAGGATCCATT +
Preference number: 6 (lower is better)
Translates to: STVCIVESRALMFLS*PSIHSRIFSFSGSI
Trigger: AATGGATCCTGAAAAACTAAAGATCCTGGAGTGGATAGAGGGCAAAGAGAGAAACATCAGAGCTCTGCTTTCCACAATGCACACCGTGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS CCA 72 bp ATCCAGTGTCACTTGGAACAGCTGAGGATATTTTTCTaGTACATCACATGCATCCAGCTCAGGCTTGGTGAA +
Preference number: 6 (lower is better)
Translates to: IQCHLEQLRIFF*YITCIQLRLGE
Trigger: TTCACCAAGCCTGAGCTGGATGCATGTGATGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGACACTGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS CAA 72 bp TTTGTCTTGGGGCTGGACTTCTATATCCAGTGTCACTaGGAACAGCTGAGGATATTTTTCTGGTACATCACA +
Preference number: 6 (lower is better)
Translates to: FVLGLDFYIQCH*EQLRIFFWYIT
Trigger: TGTGATGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGACACTGGATATAGAAGTCCAGCCCCAAGACAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9
CDS CAA 72 bp TGCATTGTGGAAAGCAGAGCTCTGATGTTTCTCTCTTaGCCCTCTATCCACTCCAGGATCTTTAGTTTTTCA +
Preference number: 6 (lower is better)
Translates to: CIVESRALMFLS*PSIHSRIFSFS
Trigger: TGAAAAACTAAAGATCCTGGAGTGGATAGAGGGCAAAGAGAGAAACATCAGAGCTCTGCTTTCCACAATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
CDS TCA 72 bp AATCCAAAAAGCTACGGATGTCATCAACCTGATTCCTaGATCCTATGTCAACACTATCCACAGGAAAGGACA +
Preference number: 6 (lower is better)
Translates to: NPKSYGCHQPDS*ILCQHYPQERT
Trigger: TGTCCTTTCCTGTGGATAGTGTTGACATAGGATTCAGGAATCAGGTTGATGACATCCGTAGCTTTTTGGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS CCA 72 bp GTGACAAGTTGTATACTGTGTAGTGGTCAAGATGTCTaGAATCCAAAAAGCTACGGATGTCATCAACCTGAT +
Preference number: 6 (lower is better)
Translates to: VTSCILCSGQDV*NPKSYGCHQPD
Trigger: ATCAGGTTGATGACATCCGTAGCTTTTTGGATTCCAGACATCTTGACCACTACACAGTATACAACTTGTCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000149047.8
ENSMUST00000154120.9
CDS TCA 72 bp ACGGTATTCTTTCATTCGTTCAAAGTCTGTGCACGTTaGATATATTTTAGTTTCTCCAATCAGAACGTCACA +
Preference number: 6 (lower is better)
Translates to: TVFFHSFKVCAR*IYFSFSNQNVT
Trigger: TGTGACGTTCTGATTGGAGAAACTAAAATATATTCAACGTGCACAGACTTTGAACGAATGAAAGAATACCGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000038207.12
ENSMUST00000094953.11
ENSMUST00000106929.10
ENSMUST00000106930.8
ENSMUST00000106933.2
ENSMUST00000154120.9