RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DNAJC30 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061118

Ensembl transcript IDs: ENSMUST00000071263.7

Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCACTGAAAAGCGTCTTTTTCTGGACCAAAGGAGAGGGATGTGTTaGTCACTGGCCAGGCTGGAGGGTGTGAGGAGGGTCAAGAGAACA +
Preference number: 1 (lower is better)
Translates to: ATEKRLFLDQRRGMC*SLARLEGVRRVKRT
Trigger: TGTTCTCTTGACCCTCCTCACACCCTCCAGCCTGGCCAGTGATCAACACATCCCTCTCCTTTGGTCCAGAAAAAGACGCTTTTCAGTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR TCA 90 bp TGGTCTTCACAGGAATCTTTATCCGGGGGCCTCTTTCTTGGCCACTaGAAAGCGTCTTTTTCTGGACCAAAGGAGAGGGATGTGTTGATC +
Preference number: 1 (lower is better)
Translates to: WSSQESLSGGLFLGH*KASFSGPKERDVLI
Trigger: GATCAACACATCCCTCTCCTTTGGTCCAGAAAAAGACGCTTTTCAGTGGCCAAGAAAGAGGCCCCCGGATAAAGATTCCTGTGAAGACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR CCA 90 bp TTTGTTGCTAGCATTCTCTCACAGAGCTACATCCCCAGCGTCTGCTaGATCTTTGATCAAGTCTCACCTGTGGCTTGGGGTAACACAGAA +
Preference number: 1 (lower is better)
Translates to: FVASILSQSYIPSVC*IFDQVSPVAWGNTE
Trigger: TTCTGTGTTACCCCAAGCCACAGGTGAGACTTGATCAAAGATCCAGCAGACGCTGGGGATGTAGCTCTGTGAGAGAATGCTAGCAACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CCA 90 bp GCAATGCAAGCAGCTAGCGAAAGAAAGACCAAGGACAGGCATGCAAGCTGCCCCGAAAGGAAGGTTGCTTaGGCTGGATCCCTTCCCCTC +
Preference number: 2 (lower is better)
Translates to: AMQAASERKTKDRHASCPERKVA*AGSLPL
Trigger: GAGGGGAAGGGATCCAGCCCAAGCAACCTTCCTTTC...GGGGCAGCTTGCATGCCTGTCCTTGGTCTTTCTTTCGCTAGCTGCTTGCATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR TCA 90 bp CAAGGGCACTCCCTAGACACAGAACTGCATTCCTTACCCTCAAGCCTTTGTTTTCCAGGCTGGAGGGTGTaGGGAGGGTCAAGAGAACAC +
Preference number: 2 (lower is better)
Translates to: QGHSLDTELHSLPSSLCFPGWRV*GGSREH
Trigger: GTGTTCTCTTGACCCTCCTCACACCCTCCAGCCTGG...AAAACAAAGGCTTGAGGGTAAGGAATGCAGTTCTGTGTCTAGGGAGTGCCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CCA 90 bp TGCCTTTTGTTGCTAGCATTCTCTCACAGAGCTACATCCCCAGCGTCTGCTGGAGAAGGTTGCTTGGGCTaGATCCCTTCCCCTCCTTTT +
Preference number: 2 (lower is better)
Translates to: CLLLLAFSHRATSPASAGEGCLG*IPSPPF
Trigger: AAAAGGAGGGGAAGGGATCCAGCCCAAGCAACCTTC...TCCAGCAGACGCTGGGGATGTAGCTCTGTGAGAGAATGCTAGCAACAAAAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR TCA 90 bp CTTCTGCTGTTAGGTTCACACAGCACCCAAGGGCACTCCCTAGACACAGAACTGCTCTTTCTTGGCCACTaGAAAGCGTCTTTTTCTGGA +
Preference number: 2 (lower is better)
Translates to: LLLLGSHSTQGHSLDTELLFLGH*KASFSG
Trigger: TCCAGAAAAAGACGCTTTTCAGTGGCCAAGAAAGAG...CAGTTCTGTGTCTAGGGAGTGCCCTTGGGTGCTGTGTGAACCTAACAGCAGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR GCA 90 bp ATCGGACAACCAGTCGTATTGCACAGTTCAGCAGTTACAGGGGAAACACCACCTTCTAGAAAGGAAGGTTaGTTGGGCTGGATCCCTTCC +
Preference number: 2 (lower is better)
Translates to: IGQPVVLHSSAVTGETPPSRKEG*LGWIPS
Trigger: GGAAGGGATCCAGCCCAAGCAACCTTCCTTTCTAGA...AGGTGGTGTTTCCCCTGTAACTGCTGAACTGTGCAATACGACTGGTTGTCCGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR GCA 90 bp CAGGCTGCACACTTAGCAATGCAAGCAGCTAGCGAAAGAAAGACCAAGGACAGGGGACAGGGCAAATCTTaGTCAGGGCTTCTGGTTAAA +
Preference number: 2 (lower is better)
Translates to: QAAHLAMQAASERKTKDRGQGKS*SGLLVK
Trigger: TTTAACCAGAAGCCCTGAGCAAGATTTGCCCTGTCC...CCTGTCCTTGGTCTTTCTTTCGCTAGCTGCTTGCATTGCTAAGTGTGCAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CCA 90 bp CCTTTTGTTGCTAGCATTCTCTCACAGAGCTACATCCCCAGCGTCTGCTGGATCGCACCCAGGGGACTCTaGAAAGCACTTAAATTTCTG +
Preference number: 2 (lower is better)
Translates to: PFVASILSQSYIPSVCWIAPRGL*KALKFL
Trigger: CAGAAATTTAAGTGCTTTCCAGAGTCCCCTGGGTGC...GATCCAGCAGACGCTGGGGATGTAGCTCTGTGAGAGAATGCTAGCAACAAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR GCA 90 bp TGCCTTTTGTTGCTAGCATTCTCTCACAGAGCTACATCCCCAGCGTCTGCTGGAGACAACCAGTCGTATTaGACAGTTCAGCAGTTACAG +
Preference number: 2 (lower is better)
Translates to: CLLLLAFSHRATSPASAGDNQSY*TVQQLQ
Trigger: CTGTAACTGCTGAACTGTGCAATACGACTGGTTGTC...TCCAGCAGACGCTGGGGATGTAGCTCTGTGAGAGAATGCTAGCAACAAAAGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CCA 90 bp CTTCTGCTGTTAGGTTCACACAGCACCCAAGGGCACTCCCTAGACACAGAACTGAAAAGCGTCTTTTTCTaGACCAAAGGAGAGGGATGT +
Preference number: 2 (lower is better)
Translates to: LLLLGSHSTQGHSLDTELKSVFF*TKGEGC
Trigger: ACATCCCTCTCCTTTGGTCCAGAAAAAGACGCTTTT...CAGTTCTGTGTCTAGGGAGTGCCCTTGGGTGCTGTGTGAACCTAACAGCAGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CCA 90 bp TTGTTGCTAGCATTCTCTCACAGAGCTACATCCCCAGCGTCTGCTGGATCTTTGTCAATCGCAGACCAATaGTTCAAAGGTCTAGAAAGG +
Preference number: 2 (lower is better)
Translates to: LLLAFSHRATSPASAGSLSIADQ*FKGLER
Trigger: CCTTTCTAGACCTTTGAACCATTGGTCTGCGATTGA...CAAAGATCCAGCAGACGCTGGGGATGTAGCTCTGTGAGAGAATGCTAGCAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CCA 90 bp AACACCACCCTACACCACCACTGTGGAGAAAAATATGAAGGACAAATCATATCCCGGGGGCCTCTTTCTTaGCCACTGAAAAGCGTCTTT +
Preference number: 2 (lower is better)
Translates to: NTTLHHHCGEKYEGQIISRGPLS*PLKSVF
Trigger: AAAGACGCTTTTCAGTGGCCAAGAAAGAGGCCCCCG...GGATATGATTTGTCCTTCATATTTTTCTCCACAGTGGTGGTGTAGGGTGGTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CCA 90 bp CAAGGGCACTCCCTAGACACAGAACTGCATTCCTTACCCTCAAGCCTTTGTTTTGTCTCACCTGTGGCTTaGGGTAACACAGAAAAACAA +
Preference number: 2 (lower is better)
Translates to: QGHSLDTELHSLPSSLCFVSPVA*GNTEKQ
Trigger: TTGTTTTTCTGTGTTACCCCAAGCCACAGGTGAGAC...AAAACAAAGGCTTGAGGGTAAGGAATGCAGTTCTGTGTCTAGGGAGTGCCCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CCA 90 bp ACCACCACTGTGGAGAAAAATATGAAGGACAAATCATATCCTTCTGCTGTTAGGCCGCAGCAAGTGTTCTaGGAGTTGGCAACTGAAGGT +
Preference number: 2 (lower is better)
Translates to: TTTVEKNMKDKSYPSAVRPQQVF*ELATEG
Trigger: ACCTTCAGTTGCCAACTCCCAGAACACTTGCTGCGG...CCTAACAGCAGAAGGATATGATTTGTCCTTCATATTTTTCTCCACAGTGGTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CCA 90 bp ACCACCACTGTGGAGAAAAATATGAAGGACAAATCATATCCTTCTGCTGTTAGGTATTATACAGACATGTaGCAGGGGACAGGGCAAATC +
Preference number: 2 (lower is better)
Translates to: TTTVEKNMKDKSYPSAVRYYTDM*QGTGQI
Trigger: GATTTGCCCTGTCCCCTGCCACATGTCTGTATAATA...CCTAACAGCAGAAGGATATGATTTGTCCTTCATATTTTTCTCCACAGTGGTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CAA 90 bp GCAATGCAAGCAGCTAGCGAAAGAAAGACCAAGGACAGGCATGCAAGCTGCCCCCCGGGGGCCTCTTTCTaGGCCACTGAAAAGCGTCTT +
Preference number: 3 (lower is better)
Translates to: AMQAASERKTKDRHASCPPGASF*ATEKRL
Trigger: AAGACGCTTTTCAGTGGCCAAGAAAGAGGCCCCCGG...GGGGCAGCTTGCATGCCTGTCCTTGGTCTTTCTTTCGCTAGCTGCTTGCATTGC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CAA 90 bp CCTTTTGTTGCTAGCATTCTCTCACAGAGCTACATCCCCAGCGTCTGCTGGATCAGAAAGGAAGGTTGCTaGGGCTGGATCCCTTCCCCT +
Preference number: 3 (lower is better)
Translates to: PFVASILSQSYIPSVCWIRKEGC*GWIPSP
Trigger: AGGGGAAGGGATCCAGCCCAAGCAACCTTCCTTTCT...GATCCAGCAGACGCTGGGGATGTAGCTCTGTGAGAGAATGCTAGCAACAAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR-3UTR CAA 90 bp CAGGCTGCACACTTAGCAATGCAAGCAGCTAGCGAAAGAAAGACCAAGGACAGGTGCCCCAAGATGAACTaGGCTCCAGTAACACCACCC +
Preference number: 3 (lower is better)
Translates to: QAAHLAMQAASERKTKDRCPKMN*APVTPP
Trigger: GGGTGGTGTTACTGGAGCCAAGTTCATCTTGGGGCA...CCTGTCCTTGGTCTTTCTTTCGCTAGCTGCTTGCATTGCTAAGTGTGCAGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR GCA 72 bp CGCAGACCAATGGTTCAAAGGTCTAGAAAGGAAGGTTaGTTGGGCTGGATCCCTTCCCCTCCTTTTCTCCGA +
Preference number: 3 (lower is better)
Translates to: RRPMVQRSRKEG*LGWIPSPPFLR
Trigger: TCGGAGAAAAGGAGGGGAAGGGATCCAGCCCAAGCAACCTTCCTTTCTAGACCTTTGAACCATTGGTCTGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR GCA 72 bp GCTAGCATTCTCTCACAGAGCTACATCCCCAGCGTCTaGTGGATCTTTGATCAAGTCTCACCTGTGGCTTGG +
Preference number: 3 (lower is better)
Translates to: ASILSQSYIPSV*WIFDQVSPVAW
Trigger: CCAAGCCACAGGTGAGACTTGATCAAAGATCCAGCAGACGCTGGGGATGTAGCTCTGTGAGAGAATGCTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR CCA 72 bp AGCATTCTCTCACAGAGCTACATCCCCAGCGTCTGCTaGATCTTTGATCAAGTCTCACCTGTGGCTTGGGGT +
Preference number: 3 (lower is better)
Translates to: SILSQSYIPSVC*IFDQVSPVAWG
Trigger: ACCCCAAGCCACAGGTGAGACTTGATCAAAGATCCAGCAGACGCTGGGGATGTAGCTCTGTGAGAGAATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR TCA 72 bp CAGGAATCTTTATCCGGGGGCCTCTTTCTTGGCCACTaGAAAGCGTCTTTTTCTGGACCAAAGGAGAGGGAT +
Preference number: 3 (lower is better)
Translates to: QESLSGGLFLGH*KASFSGPKERD
Trigger: ATCCCTCTCCTTTGGTCCAGAAAAAGACGCTTTTCAGTGGCCAAGAAAGAGGCCCCCGGATAAAGATTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR CCA 72 bp AGGCACCCAGGGGACTCTGGAAAGCACTTAAATTTCTaGTCTTCACAGGAATCTTTATCCGGGGGCCTCTTT +
Preference number: 3 (lower is better)
Translates to: RHPGDSGKHLNF*SSQESLSGGLF
Trigger: AAAGAGGCCCCCGGATAAAGATTCCTGTGAAGACCAGAAATTTAAGTGCTTTCCAGAGTCCCCTGGGTGCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR CCA 72 bp AGTTACAGGGGAAACACCACCTATTATACAGACATGTaGCAGGGGACAGGGCAAATCTTGCTCAGGGCTTCT +
Preference number: 3 (lower is better)
Translates to: SYRGNTTYYTDM*QGTGQILLRAS
Trigger: AGAAGCCCTGAGCAAGATTTGCCCTGTCCCCTGCCACATGTCTGTATAATAGGTGGTGTTTCCCCTGTAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR GCA 72 bp ATTATACAGACATGTGGCAGGGGACAGGGCAAATCTTaGTCAGGGCTTCTGGTTAAAACCGCAGCAAGTGTT +
Preference number: 3 (lower is better)
Translates to: IIQTCGRGQGKS*SGLLVKTAASV
Trigger: AACACTTGCTGCGGTTTTAACCAGAAGCCCTGAGCAAGATTTGCCCTGTCCCCTGCCACATGTCTGTATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR CCA 72 bp ACACCACTAGAGGAAGTCAAGTCAATCGCAGACCAATaGTTCAAAGGTCTAGAAAGGAAGGTTGCTTGGGCT +
Preference number: 3 (lower is better)
Translates to: TPLEEVKSIADQ*FKGLERKVAWA
Trigger: AGCCCAAGCAACCTTCCTTTCTAGACCTTTGAACCATTGGTCTGCGATTGACTTGACTTCCTCTAGTGGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR CCA 72 bp CCAGCGTCTGCTGGATCTTTGATCAAGTCTCACCTGTaGCTTGGGGTAACACAGAAAAACAAATTTCACTCG +
Preference number: 3 (lower is better)
Translates to: PASAGSLIKSHL*LGVTQKNKFHS
Trigger: CGAGTGAAATTTGTTTTTCTGTGTTACCCCAAGCCACAGGTGAGACTTGATCAAAGATCCAGCAGACGCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR CCA 72 bp GTCTGCTGGATCTTTGATCAAGTCTCACCTGTGGCTTaGGGTAACACAGAAAAACAAATTTCACTCGAGTCC +
Preference number: 3 (lower is better)
Translates to: VCWIFDQVSPVA*GNTEKQISLES
Trigger: GGACTCGAGTGAAATTTGTTTTTCTGTGTTACCCCAAGCCACAGGTGAGACTTGATCAAAGATCCAGCAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR CCA 72 bp GTAACTTCTAGAAATGAACAGGCACCCAGGGGACTCTaGAAAGCACTTAAATTTCTGGTCTTCACAGGAATC +
Preference number: 3 (lower is better)
Translates to: VTSRNEQAPRGL*KALKFLVFTGI
Trigger: GATTCCTGTGAAGACCAGAAATTTAAGTGCTTTCCAGAGTCCCCTGGGTGCCTGTTCATTTCTAGAAGTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR TCA 90 bp CCTTTTGTTGCTAGCATTCTCTCACAGAGCTACATCCCCAGCGTCTGCTGGATCCTTCGGAGACGCGCGTaGAGCGCTCGGCGGCCTCGG +
Preference number: 4 (lower is better)
Translates to: PFVASILSQSYIPSVCWILRRRA*SARRPR
Trigger: CCGAGGCCGCCGAGCGCTTCACGCGCGTCTCCGAAG...GATCCAGCAGACGCTGGGGATGTAGCTCTGTGAGAGAATGCTAGCAACAAAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR CCA 90 bp ATCGCAGACCAATGGTTCAAAGGTCTAGAAAGGAAGGTTGCTTGGGCTGGATCCGGTCCGCGCAGGTCCTaGTCGCTGAGCAAACCTCGG +
Preference number: 4 (lower is better)
Translates to: IADQWFKGLERKVAWAGSGPRRS*SLSKPR
Trigger: CCGAGGTTTGCTCAGCGACCAGGACCTGCGCGGACC...GGATCCAGCCCAAGCAACCTTCCTTTCTAGACCTTTGAACCATTGGTCTGCGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
3UTR CAA 72 bp ACCAAGGACAGGCATGCAAGCTGCCCCAAGATGAACTaGGCTCCAGTAACACCACCCTACACCACCACTGTG +
Preference number: 4 (lower is better)
Translates to: TKDRHASCPKMN*APVTPPYTTTV
Trigger: CACAGTGGTGGTGTAGGGTGGTGTTACTGGAGCCAAGTTCATCTTGGGGCAGCTTGCATGCCTGTCCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR GCA 90 bp GTTACAGGGGAAACACCACCTATTATACAGACATGTGGCAGGGGACAGGGCAAAGCTCATAGAGGGCGGTaGGGGAGTAAGTCCTCCCTC +
Preference number: 4 (lower is better)
Translates to: VTGETPPIIQTCGRGQGKAHRGR*GSKSSL
Trigger: GAGGGAGGACTTACTCCCGCACCGCCCTCTATGAGC...TTTGCCCTGTCCCCTGCCACATGTCTGTATAATAGGTGGTGTTTCCCCTGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR GCA 90 bp ATCGGACAACCAGTCGTATTGCACAGTTCAGCAGTTACAGGGGAAACACCACCTGCCGGAGGATGGTGCTaGCCAAGACCAGGTAAGCTT +
Preference number: 4 (lower is better)
Translates to: IGQPVVLHSSAVTGETPPAGGWC*PRPGKL
Trigger: AAGCTTACCTGGTCTTGGGCAGCACCATCCTCCGGC...AGGTGGTGTTTCCCCTGTAACTGCTGAACTGTGCAATACGACTGGTTGTCCGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR GCA 90 bp CCACTGAAAAGCGTCTTTTTCTGGACCAAAGGAGAGGGATGTGTTGATCACTGGTGCGCCGGAGGATGGTaGTGCCCAAGACCAGGTAAG +
Preference number: 4 (lower is better)
Translates to: PLKSVFFWTKGEGCVDHWCAGGW*CPRPGK
Trigger: CTTACCTGGTCTTGGGCAGCACCATCCTCCGGCGCA...CCAGTGATCAACACATCCCTCTCCTTTGGTCCAGAAAAAGACGCTTTTCAGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR GCA 90 bp ATCGCAGACCAATGGTTCAAAGGTCTAGAAAGGAAGGTTGCTTGGGCTGGATCCGGTTCTCCTGCTTTTTaGGAAGGGCTTCCCTCCGGG +
Preference number: 4 (lower is better)
Translates to: IADQWFKGLERKVAWAGSGSPAF*EGLPSG
Trigger: CCCGGAGGGAAGCCCTTCGCAAAAAGCAGGAGAACC...GGATCCAGCCCAAGCAACCTTCCTTTCTAGACCTTTGAACCATTGGTCTGCGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR CCA 90 bp TTTGATCAAGTCTCACCTGTGGCTTGGGGTAACACAGAAAAACAAATTTCACTCGTGCTTGCGTGGCCGTaGAGGGGACGCCCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: FDQVSPVAWGNTEKQISLVLAWP*RGRPAA
Trigger: AGCTGCTGGGCGTCCCCTCCACGGCCACGCAAGCAC...GAGTGAAATTTGTTTTTCTGTGTTACCCCAAGCCACAGGTGAGACTTGATCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR CCA 90 bp GGATCTTTGATCAAGTCTCACCTGTGGCTTGGGGTAACACAGAAAAACAAATTTACTTGCGCCGGAGGATaGTGCTGCCCAAGACCAGGT +
Preference number: 4 (lower is better)
Translates to: GSLIKSHLWLGVTQKNKFTCAGG*CCPRPG
Trigger: ACCTGGTCTTGGGCAGCACCATCCTCCGGCGCAAGT...AAATTTGTTTTTCTGTGTTACCCCAAGCCACAGGTGAGACTTGATCAAAGATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR CCA 90 bp TTTGATCAAGTCTCACCTGTGGCTTGGGGTAACACAGAAAAACAAATTTCACTCGTCCCCTTGTTGGCCTaGTTCTCCTGCTTTTTGCGA +
Preference number: 4 (lower is better)
Translates to: FDQVSPVAWGNTEKQISLVPLLA*FSCFLR
Trigger: TCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGAC...GAGTGAAATTTGTTTTTCTGTGTTACCCCAAGCCACAGGTGAGACTTGATCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS TCA 90 bp GGAGGATGGTGCTGCCCAAGACCAGGTAAGCTTCGGAGACGCGCGTaGAGCGCTCGGCGGCCTCGGCGCTCCCGGGGTTGCGATCCGGAT +
Preference number: 5 (lower is better)
Translates to: GGWCCPRPGKLRRRA*SARRPRRSRGCDPD
Trigger: ATCCGGATCGCAACCCCGGGAGCGCCGAGGCCGCCGAGCGCTTCACGCGCGTCTCCGAAGCTTACCTGGTCTTGGGCAGCACCATCCTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS GCA 90 bp CTTGCGTGGCCGTGGAGGGGACGCCCAGCAGCTCATAGAGGGCGGTaGGGGAGTAAGTCCTCCCTCGCGAGCACAAACCCGTGGCGGAAC +
Preference number: 5 (lower is better)
Translates to: LAWPWRGRPAAHRGR*GSKSSLASTNPWRN
Trigger: GTTCCGCCACGGGTTTGTGCTCGCGAGGGAGGACTTACTCCCGCACCGCCCTCTATGAGCTGCTGGGCGTCCCCTCCACGGCCACGCAAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CCA 90 bp GCCACGGGCGTCTTAGAGGGCTTGACGCCAGGTCCGCGCAGGTCCTaGTCGCTGAGCAAACCTCGGTCATACTTGCGCCGGAGGATGGTG +
Preference number: 5 (lower is better)
Translates to: ATGVLEGLTPGPRRS*SLSKPRSYLRRRMV
Trigger: CACCATCCTCCGGCGCAAGTATGACCGAGGTTTGCTCAGCGACCAGGACCTGCGCGGACCTGGCGTCAAGCCCTCTAAGACGCCCGTGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS GCA 90 bp CGGATGGTAGAGGAAGCTCTGCCGGTAGTACGCCGCTTTGATCTGTaGTTGCGTGGCCGTGGAGGGGACGCCCAGCAGCTCATAGAGGGC +
Preference number: 5 (lower is better)
Translates to: RMVEEALPVVRRFDL*LRGRGGDAQQLIEG
Trigger: GCCCTCTATGAGCTGCTGGGCGTCCCCTCCACGGCCACGCAAGCACAGATCAAAGCGGCGTACTACCGGCAGAGCTTCCTCTACCATCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS TCA 90 bp TGCGATCCGGATGGTAGAGGAAGCTCTGCCGGTAGTACGCCGCTTTaGTCTGTGCTTGCGTGGCCGTGGAGGGGACGCCCAGCAGCTCAT +
Preference number: 5 (lower is better)
Translates to: CDPDGRGSSAGSTPL*SVLAWPWRGRPAAH
Trigger: ATGAGCTGCTGGGCGTCCCCTCCACGGCCACGCAAGCACAGATCAAAGCGGCGTACTACCGGCAGAGCTTCCTCTACCATCCGGATCGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS GCA 90 bp TCTCGTGTATCGTCCCAGCTGGTCCCCTTGTTGGCCTGGTTCTCCTaGTTTTTGCGAAGGGCTTCCCTCCGGGCGCGCAAACGCCGTTCT +
Preference number: 5 (lower is better)
Translates to: SRVSSQLVPLLAWFS*FLRRASLRARKRRS
Trigger: AGAACGGCGTTTGCGCGCCCGGAGGGAAGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTGGGACGATACACGAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CCA 90 bp AAAGTGGCGTCTCGTGTATCGTCCCAGCTGGTCCCCTTGTTGGCCTaGTTCTCCTGCTTTTTGCGAAGGGCTTCCCTCCGGGCGCGCAAA +
Preference number: 5 (lower is better)
Translates to: KVASRVSSQLVPLLA*FSCFLRRASLRARK
Trigger: TTTGCGCGCCCGGAGGGAAGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTGGGACGATACACGAGACGCCACTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CCA 90 bp CAAAGAAAGTGGCGTCTCGTGTATCGTCCCAGCTGGTCCCCTTGTTaGCCTGGTTCTCCTGCTTTTTGCGAAGGGCTTCCCTCCGGGCGC +
Preference number: 5 (lower is better)
Translates to: QRKWRLVYRPSWSPC*PGSPAFCEGLPSGR
Trigger: GCGCCCGGAGGGAAGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTGGGACGATACACGAGACGCCACTTTCTTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR CAA 90 bp CCACTGAAAAGCGTCTTTTTCTGGACCAAAGGAGAGGGATGTGTTGATCACTGGGGCGTCTTAGAGGGCTaGACGCCAGGTCCGCGCAGG +
Preference number: 5 (lower is better)
Translates to: PLKSVFFWTKGEGCVDHWGVLEG*TPGPRR
Trigger: CCTGCGCGGACCTGGCGTCAAGCCCTCTAAGACGCC...CCAGTGATCAACACATCCCTCTCCTTTGGTCCAGAAAAAGACGCTTTTCAGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR CAA 90 bp TTGTTGCTAGCATTCTCTCACAGAGCTACATCCCCAGCGTCTGCTGGATCTTTGCGCTTTGATCTGTGCTaGCGTGGCCGTGGAGGGGAC +
Preference number: 5 (lower is better)
Translates to: LLLAFSHRATSPASAGSLRFDLC*RGRGGD
Trigger: GTCCCCTCCACGGCCACGCAAGCACAGATCAAAGCG...CAAAGATCCAGCAGACGCTGGGGATGTAGCTCTGTGAGAGAATGCTAGCAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS-3UTR CAA 90 bp ATCCCCAGCGTCTGCTGGATCTTTGATCAAGTCTCACCTGTGGCTTGGGGTAACCAGCTGGTCCCCTTGTaGGCCTGGTTCTCCTGCTTT +
Preference number: 5 (lower is better)
Translates to: IPSVCWIFDQVSPVAWGNQLVPL*AWFSCF
Trigger: AAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTG...GTTACCCCAAGCCACAGGTGAGACTTGATCAAAGATCCAGCAGACGCTGGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS TCA 72 bp TGCTGCCCAAGACCAGGTAAGCTTCGGAGACGCGCGTaGAGCGCTCGGCGGCCTCGGCGCTCCCGGGGTTGC +
Preference number: 6 (lower is better)
Translates to: CCPRPGKLRRRA*SARRPRRSRGC
Trigger: GCAACCCCGGGAGCGCCGAGGCCGCCGAGCGCTTCACGCGCGTCTCCGAAGCTTACCTGGTCTTGGGCAGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CAA 72 bp GGAGGAGCGGGATCGGCCACGGGCGTCTTAGAGGGCTaGACGCCAGGTCCGCGCAGGTCCTGGTCGCTGAGC +
Preference number: 6 (lower is better)
Translates to: GGAGSATGVLEG*TPGPRRSWSLS
Trigger: GCTCAGCGACCAGGACCTGCGCGGACCTGGCGTCAAGCCCTCTAAGACGCCCGTGGCCGATCCCGCTCCTCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CAA 90 bp GGAGGGCGAGGAGGAGCGGGATCGGCCACGGGCGTCTTAGAGGGCTaGACGCCAGGTCCGCGCAGGTCCTGGTCGCTGAGCAAACCTCGG +
Preference number: 6 (lower is better)
Translates to: GGRGGAGSATGVLEG*TPGPRRSWSLSKPR
Trigger: CCGAGGTTTGCTCAGCGACCAGGACCTGCGCGGACCTGGCGTCAAGCCCTCTAAGACGCCCGTGGCCGATCCCGCTCCTCCTCGCCCTCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS GCA 72 bp CCGTGGAGGGGACGCCCAGCAGCTCATAGAGGGCGGTaGGGGAGTAAGTCCTCCCTCGCGAGCACAAACCCG +
Preference number: 6 (lower is better)
Translates to: PWRGRPAAHRGR*GSKSSLASTNP
Trigger: CGGGTTTGTGCTCGCGAGGGAGGACTTACTCCCGCACCGCCCTCTATGAGCTGCTGGGCGTCCCCTCCACGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS GCA 72 bp GAGGAAGCTCTGCCGGTAGTACGCCGCTTTGATCTGTaGTTGCGTGGCCGTGGAGGGGACGCCCAGCAGCTC +
Preference number: 6 (lower is better)
Translates to: EEALPVVRRFDL*LRGRGGDAQQL
Trigger: GAGCTGCTGGGCGTCCCCTCCACGGCCACGCAAGCACAGATCAAAGCGGCGTACTACCGGCAGAGCTTCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CCA 72 bp GTCTTAGAGGGCTTGACGCCAGGTCCGCGCAGGTCCTaGTCGCTGAGCAAACCTCGGTCATACTTGCGCCGG +
Preference number: 6 (lower is better)
Translates to: VLEGLTPGPRRS*SLSKPRSYLRR
Trigger: CCGGCGCAAGTATGACCGAGGTTTGCTCAGCGACCAGGACCTGCGCGGACCTGGCGTCAAGCCCTCTAAGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CAA 72 bp CAGCTGGTCCCCTTGTTGGCCTGGTTCTCCTGCTTTTaGCGAAGGGCTTCCCTCCGGGCGCGCAAACGCCGT +
Preference number: 6 (lower is better)
Translates to: QLVPLLAWFSCF*RRASLRARKRR
Trigger: ACGGCGTTTGCGCGCCCGGAGGGAAGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CAA 90 bp ATGGTAGAGGAAGCTCTGCCGGTAGTACGCCGCTTTGATCTGTGCTaGCGTGGCCGTGGAGGGGACGCCCAGCAGCTCATAGAGGGCGGT +
Preference number: 6 (lower is better)
Translates to: MVEEALPVVRRFDLC*RGRGGDAQQLIEGG
Trigger: ACCGCCCTCTATGAGCTGCTGGGCGTCCCCTCCACGGCCACGCAAGCACAGATCAAAGCGGCGTACTACCGGCAGAGCTTCCTCTACCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS TCA 72 bp GATGGTAGAGGAAGCTCTGCCGGTAGTACGCCGCTTTaGTCTGTGCTTGCGTGGCCGTGGAGGGGACGCCCA +
Preference number: 6 (lower is better)
Translates to: DGRGSSAGSTPL*SVLAWPWRGRP
Trigger: TGGGCGTCCCCTCCACGGCCACGCAAGCACAGATCAAAGCGGCGTACTACCGGCAGAGCTTCCTCTACCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS GCA 72 bp AGCTGGTCCCCTTGTTGGCCTGGTTCTCCTGCTTTTTaGGAAGGGCTTCCCTCCGGGCGCGCAAACGCCGTT +
Preference number: 6 (lower is better)
Translates to: SWSPCWPGSPAF*EGLPSGRANAV
Trigger: AACGGCGTTTGCGCGCCCGGAGGGAAGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CAA 72 bp GAAGCTCTGCCGGTAGTACGCCGCTTTGATCTGTGCTaGCGTGGCCGTGGAGGGGACGCCCAGCAGCTCATA +
Preference number: 6 (lower is better)
Translates to: EALPVVRRFDLC*RGRGGDAQQLI
Trigger: TATGAGCTGCTGGGCGTCCCCTCCACGGCCACGCAAGCACAGATCAAAGCGGCGTACTACCGGCAGAGCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CCA 72 bp TCTCGTGTATCGTCCCAGCTGGTCCCCTTGTTGGCCTaGTTCTCCTGCTTTTTGCGAAGGGCTTCCCTCCGG +
Preference number: 6 (lower is better)
Translates to: SRVSSQLVPLLA*FSCFLRRASLR
Trigger: CCGGAGGGAAGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTGGGACGATACACGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CCA 72 bp TGGCGTCTCGTGTATCGTCCCAGCTGGTCCCCTTGTTaGCCTGGTTCTCCTGCTTTTTGCGAAGGGCTTCCC +
Preference number: 6 (lower is better)
Translates to: WRLVYRPSWSPC*PGSPAFCEGLP
Trigger: GGGAAGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTGGGACGATACACGAGACGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CAA 72 bp GTGGCGTCTCGTGTATCGTCCCAGCTGGTCCCCTTGTaGGCCTGGTTCTCCTGCTTTTTGCGAAGGGCTTCC +
Preference number: 6 (lower is better)
Translates to: VASRVSSQLVPL*AWFSCFLRRAS
Trigger: GGAAGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTGGGACGATACACGAGACGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CAA 90 bp ACAAAGAAAGTGGCGTCTCGTGTATCGTCCCAGCTGGTCCCCTTGTaGGCCTGGTTCTCCTGCTTTTTGCGAAGGGCTTCCCTCCGGGCG +
Preference number: 6 (lower is better)
Translates to: TKKVASRVSSQLVPL*AWFSCFLRRASLRA
Trigger: CGCCCGGAGGGAAGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTGGGACGATACACGAGACGCCACTTTCTTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CAA 90 bp ACGACAAAGAAAGTGGCGTCTCGTGTATCGTCCCAGCTGGTCCCCTaGTTGGCCTGGTTCTCCTGCTTTTTGCGAAGGGCTTCCCTCCGG +
Preference number: 6 (lower is better)
Translates to: TTKKVASRVSSQLVP*LAWFSCFLRRASLR
Trigger: CCGGAGGGAAGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTGGGACGATACACGAGACGCCACTTTCTTTGTCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7
CDS CAA 72 bp AAAGTGGCGTCTCGTGTATCGTCCCAGCTGGTCCCCTaGTTGGCCTGGTTCTCCTGCTTTTTGCGAAGGGCT +
Preference number: 6 (lower is better)
Translates to: KVASRVSSQLVP*LAWFSCFLRRA
Trigger: AGCCCTTCGCAAAAAGCAGGAGAACCAGGCCAACAAGGGGACCAGCTGGGACGATACACGAGACGCCACTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071263.7