Pregenerated sensors for DNAJC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029014Ensembl transcript IDs: ENSMUST00000030771.12, ENSMUST00000115192.2, ENSMUST00000115193.8, ENSMUST00000115195.8
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTATAACAACAAGATGCCCAATAAAAGAACCCTGGGGCTGCAGATaGAGCCTAGTGTGGAGCTCGTGTGCAGCAGGTAACACTGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: LITTRCPIKEPWGCR*SLVWSSCAAGNTAQ Trigger: CTGGGCAGTGTTACCTGCTGCACACGAGCTCCACACTAGGCTGCATCTGCAGCCCCAGGGTTCTTTTATTGGGCATCTTGTTGTTATAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| 3UTR TCA 90 bp | TCAGAATTCTGTCAGCAGAACATAGATAATACTACTGTAGCTGAGTaGGGTGGGGCTGCATGCCTGTCAGTGCTCAGGAGAGTGAGCCTG | + |
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Preference number: 1 (lower is better) Translates to: SEFCQQNIDNTTVAE*GGAACLSVLRRVSL Trigger: CAGGCTCACTCTCCTGAGCACTGACAGGCATGCAGCCCCACCTCACTCAGCTACAGTAGTATTATCTATGTTCTGCTGACAGAATTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| 3UTR GCA 90 bp | AGAAGCCTTATAACAACAAGATGCCCAATAAAAGAACCCTGGGGCTaGAGATGCAGCCTAGTGTGGAGCTCGTGTGCAGCAGGTAACACT | + |
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Preference number: 1 (lower is better) Translates to: RSLITTRCPIKEPWG*RCSLVWSSCAAGNT Trigger: AGTGTTACCTGCTGCACACGAGCTCCACACTAGGCTGCATCTGCAGCCCCAGGGTTCTTTTATTGGGCATCTTGTTGTTATAAGGCTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| 3UTR CCA 90 bp | ATAACAAGAAGCCTTATAACAACAAGATGCCCAATAAAAGAACCCTaGGGCTGCAGATGCAGCCTAGTGTGGAGCTCGTGTGCAGCAGGT | + |
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Preference number: 1 (lower is better) Translates to: ITRSLITTRCPIKEP*GCRCSLVWSSCAAG Trigger: ACCTGCTGCACACGAGCTCCACACTAGGCTGCATCTGCAGCCCCAGGGTTCTTTTATTGGGCATCTTGTTGTTATAAGGCTTCTTGTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| 3UTR GCA 90 bp | TGCTACCCAACAGCAGCACCACATGCTAATTACCAAGGCAGACAGTaGTTCTTATTAGGGCTCAATACAGCAGAAGAAAGGAACAGAACC | + |
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Preference number: 1 (lower is better) Translates to: CYPTAAPHANYQGRQ*FLLGLNTAEERNRT Trigger: GGTTCTGTTCCTTTCTTCTGCTGTATTGAGCCCTAATAAGAAGCACTGTCTGCCTTGGTAATTAGCATGTGGTGCTGCTGTTGGGTAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| 3UTR-3UTR GCA 90 bp | TGCAGCCTAGTGTGGAGCTCGTGTGCAGCAGGTAACACTGCCCAGGCTCACCCAAGGAGAGGGATGCGCTaGTACCCAACAGCAGCACCA | + |
|
Preference number: 2 (lower is better) Translates to: CSLVWSSCAAGNTAQAHPRRGMR*YPTAAP Trigger: TGGTGCTGCTGTTGGGTAGCAGCGCATCCCTCTCCT...TGGGTGAGCCTGGGCAGTGTTACCTGCTGCACACGAGCTCCACACTAGGCTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| 3UTR GCA 72 bp | ATAACAACAAGATGCCCAATAAAAGAACCCTGGGGCTaGAGATGCAGCCTAGTGTGGAGCTCGTGTGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: ITTRCPIKEPWG*RCSLVWSSCAA Trigger: TGCTGCACACGAGCTCCACACTAGGCTGCATCTGCAGCCCCAGGGTTCTTTTATTGGGCATCTTGTTGTTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| 3UTR TCA 72 bp | TGTCAGCAGAACATAGATAATACTACTGTAGCTGAGTaGGGTGGGGCTGCATGCCTGTCAGTGCTCAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: CQQNIDNTTVAE*GGAACLSVLRR Trigger: TCTCCTGAGCACTGACAGGCATGCAGCCCCACCTCACTCAGCTACAGTAGTATTATCTATGTTCTGCTGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| 3UTR CCA 72 bp | AGCCTTATAACAACAAGATGCCCAATAAAAGAACCCTaGGGCTGCAGATGCAGCCTAGTGTGGAGCTCGTGT | + |
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Preference number: 3 (lower is better) Translates to: SLITTRCPIKEP*GCRCSLVWSSC Trigger: ACACGAGCTCCACACTAGGCTGCATCTGCAGCCCCAGGGTTCTTTTATTGGGCATCTTGTTGTTATAAGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| 3UTR GCA 72 bp | ACAGCAGCACCACATGCTAATTACCAAGGCAGACAGTaGTTCTTATTAGGGCTCAATACAGCAGAAGAAAGG | + |
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Preference number: 3 (lower is better) Translates to: TAAPHANYQGRQ*FLLGLNTAEER Trigger: CCTTTCTTCTGCTGTATTGAGCCCTAATAAGAAGCACTGTCTGCCTTGGTAATTAGCATGTGGTGCTGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| CDS-3UTR TCA 90 bp | AGGTGGGGCTGCATGCCTGTCAGTGCTCAGGAGAGTGAGCCTGAGGCCATCCTATTCAACTTGACAGACTaGAGAGGCGGAGGTCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: RWGCMPVSAQESEPEAILFNLTD*RGGGQS Trigger: GCTCTGACCTCCGCCTCTTCAGTCTGTCAAGTTGAA...TAGGATGGCCTCAGGCTCACTCTCCTGAGCACTGACAGGCATGCAGCCCCACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR TCA 90 bp | GCTCGTGTGCAGCAGGTAACACTGCCCAGGCTCACCCACAACATCAAAAGCTTTCCCACAGGTTCAACTTaGCAGACTGAAGAGGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: ARVQQVTLPRLTHNIKSFPTGST*QTEEAE Trigger: CTCCGCCTCTTCAGTCTGTCAAGTTGAACCTGTGGG...AAAGCTTTTGATGTTGTGGGTGAGCCTGGGCAGTGTTACCTGCTGCACACGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| CDS-3UTR TCA 90 bp | GCAGCAGGTAACACTGCCCAGGCTCACCCACAACATCAAAAGCTTTCTGCAAGCTTCAACTTGACAGACTaGAGAGGCGGAGGTCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: AAGNTAQAHPQHQKLSASFNLTD*RGGGQS Trigger: GCTCTGACCTCCGCCTCTTCAGTCTGTCAAGTTGAA...GCTTGCAGAAAGCTTTTGATGTTGTGGGTGAGCCTGGGCAGTGTTACCTGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| CDS-3UTR CCA 90 bp | AGGTGGGGCTGCATGCCTGTCAGTGCTCAGGAGAGTGAGCCTGAGGCCATCCTATGCCCGCCTTTTCACTaGATCAGACAACATTTCATA | + |
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Preference number: 4 (lower is better) Translates to: RWGCMPVSAQESEPEAILCPPFH*IRQHFI Trigger: TATGAAATGTTGTCTGATCCAGTGAAAAGGCGGGCA...TAGGATGGCCTCAGGCTCACTCTCCTGAGCACTGACAGGCATGCAGCCCCACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR GCA 90 bp | AGGTGGGGCTGCATGCCTGTCAGTGCTCAGGAGAGTGAGCCTGAGGCCATCCTATTCTCTCTCCTCATCTaGTCATTCACTTCTTCTATC | + |
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Preference number: 4 (lower is better) Translates to: RWGCMPVSAQESEPEAILFSLLI*SFTSSI Trigger: GATAGAAGAAGTGAATGAGCAGATGAGGAGAGAGAA...TAGGATGGCCTCAGGCTCACTCTCCTGAGCACTGACAGGCATGCAGCCCCACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| 3UTR CAA 72 bp | ACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCTaGCATTCAGCACTTGCTCCTGAGCAGCTTTCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: TTRIACIISWLC*HSALAPEQLSW Trigger: CCAAGAAAGCTGCTCAGGAGCAAGTGCTGAATGCAAGCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR TCA 90 bp | ACAAGATGCCCAATAAAAGAACCCTGGGGCTGCAGATGCAGCCTAGTGTGGAGCTTCCGTTTGTCTGGATaGTGTTTCAAGACCATTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TRCPIKEPWGCRCSLVWSFRLSG*CFKTIA Trigger: AGCAATGGTCTTGAAACATCATCCAGACAAACGGAA...GCTCCACACTAGGCTGCATCTGCAGCCCCAGGGTTCTTTTATTGGGCATCTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| CDS-3UTR GCA 90 bp | TATTCCACAGATCAACAAAAAGCCAATGCTGTAGCTGCTGAGCTCACCAACTGCTTTTCTTTGGCTTCCTaGTCCTTCCGCCTGGCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: YSTDQQKANAVAAELTNCFSLAS*SFRLAS Trigger: AGAGGCCAGGCGGAAGGAGCAGGAAGCCAAAGAAAA...GCAGTTGGTGAGCTCAGCAGCTACAGCATTGGCTTTTTGTTGATCTGTGGAATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR CCA 90 bp | AAGATGCCCAATAAAAGAACCCTGGGGCTGCAGATGCAGCCTAGTGTGGAGCTCCGCTTTCCGTTTGTCTaGATGATGTTTCAAGACCAT | + |
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Preference number: 4 (lower is better) Translates to: KMPNKRTLGLQMQPSVELRFPFV*MMFQDH Trigger: ATGGTCTTGAAACATCATCCAGACAAACGGAAAGCG...GAGCTCCACACTAGGCTGCATCTGCAGCCCCAGGGTTCTTTTATTGGGCATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| CDS-3UTR CCA 90 bp | GCTCGTGTGCAGCAGGTAACACTGCCCAGGCTCACCCACAACATCAAAAGCTTTTGCCCGCCTTTTCACTaGATCAGACAACATTTCATA | + |
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Preference number: 4 (lower is better) Translates to: ARVQQVTLPRLTHNIKSFCPPFH*IRQHFI Trigger: TATGAAATGTTGTCTGATCCAGTGAAAAGGCGGGCA...AAAGCTTTTGATGTTGTGGGTGAGCCTGGGCAGTGTTACCTGCTGCACACGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| CDS-3UTR TCA 90 bp | TATTATAAAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCCCCACAGGTTCAACTTaGCAGACTGAAGAGGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: YYKSAHTTRIACIISWLCPTGST*QTEEAE Trigger: CTCCGCCTCTTCAGTCTGTCAAGTTGAACCTGTGGG...GCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTTTATAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR CCA 90 bp | TATTATAAAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCCCTGCTCCTTCCGCCTaGCCTCTGCTTTTGCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: YYKSAHTTRIACIISWLCPAPSA*PLLLLS Trigger: AGAAAGCAAAAGCAGAGGCCAGGCGGAAGGAGCAGG...GCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTTTATAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR TCA 90 bp | AAGCTGCTAATGGGGAAGACAGCAGACAAGCCACTGAACACTATGACCAAAGGGAAGACCATTGCTTTATaGGCTGCTTTGATCTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: KLLMGKTADKPLNTMTKGKTIAL*AALICL Trigger: GAGACAGATCAAAGCAGCTCATAAAGCAATGGTCTT...CCCTTTGGTCATAGTGTTCAGTGGCTTGTCTGCTGTCTTCCCCATTAGCAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115192.2 |
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| CDS-3UTR CCA 90 bp | TATTATAAAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCACTTCTCTGCATTCTTaGATGCTTGCCGCATCCGAG | + |
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Preference number: 4 (lower is better) Translates to: YYKSAHTTRIACIISWLCTSLHS*MLAASE Trigger: CTCGGATGCGGCAAGCATCCAAGAATGCAGAGAAGT...GCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTTTATAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR TCA 90 bp | AAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCTTGCATTTTCCGTTTGTCTGGATaGTGTTTCAAGACCATTGCT | + |
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Preference number: 4 (lower is better) Translates to: KVHTQPGLPALFPGSACIFRLSG*CFKTIA Trigger: AGCAATGGTCTTGAAACATCATCCAGACAAACGGAA...AATGCAAGCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR TCA 90 bp | AAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCTTGCATTCTTTGGCAGTTCTTTTaGCGCCAGAAGAAGAATGTA | + |
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Preference number: 4 (lower is better) Translates to: KVHTQPGLPALFPGSACILWQFF*RQKKNV Trigger: TACATTCTTCTTCTGGCGTCAAAAGAACTGCCAAAG...AATGCAAGCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR CCA 90 bp | AAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCTTGCATTCGCTTTCCGTTTGTCTaGATGATGTTTCAAGACCAT | + |
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Preference number: 4 (lower is better) Translates to: KVHTQPGLPALFPGSACIRFPFV*MMFQDH Trigger: ATGGTCTTGAAACATCATCCAGACAAACGGAAAGCG...AATGCAAGCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR GCA 90 bp | CTTGGCTTTCACCATCTCCACAAGTTCCTAAGAGGAAACAAGGTTGTTAAAATCTTCCTTTTTCCTTTGTaGCCTCGTGGCTCTGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LGFHHLHKFLRGNKVVKIFLFPL*PRGSVL Trigger: CAGAACAGAGCCACGAGGGCACAAAGGAAAAAGGAA...GATTTTAACAACCTTGTTTCCTCTTAGGAACTTGTGGAGATGGTGAAAGCCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR GCA 90 bp | TATTATAAAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCAGTGATTCCAGCTCTTaGACGAGTTCCGAAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: YYKSAHTTRIACIISWLCSDSSS*TSSEVS Trigger: AGAAACTTCGGAACTCGTGCAAGAGCTGGAATCACT...GCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTTTATAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR TCA 90 bp | CACAAGTTCCTAAGAGGAAACAAGGTTGTTAAAATCAGAATTCTGTCAGCAGAACCCACTTCCACCAGTTaGCTTCTCTGCATTCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: HKFLRGNKVVKIRILSAEPTSTS*LLCILG Trigger: TCCAAGAATGCAGAGAAGTCAACTGGTGGAAGTGGG...TTCTGCTGACAGAATTCTGATTTTAACAACCTTGTTTCCTCTTAGGAACTTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR TCA 90 bp | TTTCCTGTAATAATTCTGGCCTACAGCTATTTTGATACTAAAGTCAGCACTGTTACCTTCAAACCGTTCTaGTGGTGCTGCACTGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: FPVIILAYSYFDTKVSTVTFKPF*WCCTVS Trigger: GCTGACAGTGCAGCACCATCAGAACGGTTTGAAGGT...AACAGTGCTGACTTTAGTATCAAAATAGCTGTAGGCCAGAATTATTACAGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR TCA 90 bp | ATTCTGGCCTACAGCTATTTTGATACTAAAGTCAGCACTGTTATCACCCAGTTAAATGACTTCCCATCTTaGGTTTGTTCCAGCAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: ILAYSYFDTKVSTVITQLNDFPS*VCSSRE Trigger: TTCCCTGCTGGAACAAACTCAAGATGGGAAGTCATT...TAACTGGGTGATAACAGTGCTGACTTTAGTATCAAAATAGCTGTAGGCCAGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR GCA 90 bp | TTTCCTGTAATAATTCTGGCCTACAGCTATTTTGATACTAAAGTCAGCACTGTTCTTCCGCCTGGCCTCTaGTTTTGCTTTCTTTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: FPVIILAYSYFDTKVSTVLPPGL*FCFLFC Trigger: GCAGAAAAGAAAGCAAAAGCAGAGGCCAGGCGGAAG...AACAGTGCTGACTTTAGTATCAAAATAGCTGTAGGCCAGAATTATTACAGGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR GCA 90 bp | TATTATAAAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCGAGTTCCGAAGTTTCTaGCTTTCCTTTTTAATGGCT | + |
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Preference number: 4 (lower is better) Translates to: YYKSAHTTRIACIISWLCEFRSF*LSFLMA Trigger: AGCCATTAAAAAGGAAAGGCAGAAACTTCGGAACTC...GCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTTTATAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR GCA 90 bp | TATTCCACAGATCAACAAAAAGCCAATGCTGTAGCTGCTGAGCTCACCAACTGCTATCTGTTTTTCAAGTaGAGCTTTTCCTACTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: YSTDQQKANAVAAELTNCYLFFK*SFSYFS Trigger: AGAGAAGTAGGAAAAGCTGCACTTGAAAAACAGATA...GCAGTTGGTGAGCTCAGCAGCTACAGCATTGGCTTTTTGTTGATCTGTGGAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR GCA 90 bp | CACAAGTTCCTAAGAGGAAACAAGGTTGTTAAAATCAGAATTCTGTCAGCAGAACTGACCAATTTTTACTaGCACTCCCACTTCCACCAG | + |
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Preference number: 4 (lower is better) Translates to: HKFLRGNKVVKIRILSAELTNFY*HSHFHQ Trigger: CTGGTGGAAGTGGGAGTGGCAGTAAAAATTGGTCAG...TTCTGCTGACAGAATTCTGATTTTAACAACCTTGTTTCCTCTTAGGAACTTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR CCA 90 bp | TTCCTAAGAGGAAACAAGGTTGTTAAAATCAGAATTCTGTCAGCAGAACATAGACTGTTGTCCAAGGGGTaGAATCTATGCAGGGACCTT | + |
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Preference number: 4 (lower is better) Translates to: FLRGNKVVKIRILSAEHRLLSKG*NLCRDL Trigger: AAGGTCCCTGCATAGATTCCACCCCTTGGACAACAG...TCTATGTTCTGCTGACAGAATTCTGATTTTAACAACCTTGTTTCCTCTTAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR GCA 90 bp | TTTCCTGTAATAATTCTGGCCTACAGCTATTTTGATACTAAAGTCAGCACTGTTCTCGTGGCTCTGTTCTaGTTTTCAATCCACTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: FPVIILAYSYFDTKVSTVLVALF*FSIHFL Trigger: GAGGAAGTGGATTGAAAAGCAGAACAGAGCCACGAG...AACAGTGCTGACTTTAGTATCAAAATAGCTGTAGGCCAGAATTATTACAGGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR GCA 90 bp | TTCCTAAGAGGAAACAAGGTTGTTAAAATCAGAATTCTGTCAGCAGAACATAGAATTTCATTCAAGCCCTaGAAGCTTGCTAGTTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: FLRGNKVVKIRILSAEHRISFKP*KLASSS Trigger: GCTTGAACTAGCAAGCTTGCAGGGCTTGAATGAAAT...TCTATGTTCTGCTGACAGAATTCTGATTTTAACAACCTTGTTTCCTCTTAGGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR GCA 90 bp | TTCCTAAGAGGAAACAAGGTTGTTAAAATCAGAATTCTGTCAGCAGAACATAGAAATTCAGCTTGTCTTTaGTTTTCTTTGGCTTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: FLRGNKVVKIRILSAEHRNSACL*FSLASC Trigger: GCAGGAAGCCAAAGAAAAGCAAAGACAAGCTGAATT...TCTATGTTCTGCTGACAGAATTCTGATTTTAACAACCTTGTTTCCTCTTAGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS TCA 90 bp | TGTTGTCCAAGGGGTGGAATCTATGCAGGGACCTTCAAACCGTTCTaGTGGTGCTGCACTGTCAGCCTGAGAGGCCACTCCATGTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: CCPRGGIYAGTFKPF*WCCTVSLRGHSMFF Trigger: AAAGAACATGGAGTGGCCTCTCAGGCTGACAGTGCAGCACCATCAGAACGGTTTGAAGGTCCCTGCATAGATTCCACCCCTTGGACAACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030771.12 ENSMUST00000115193.8 ENSMUST00000115195.8 |
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| CDS-3UTR CAA 90 bp | AGGTGGGGCTGCATGCCTGTCAGTGCTCAGGAGAGTGAGCCTGAGGCCATCCTATTGCTAATAACATCTTaGGCAGTTCTTTTGACGCCA | + |
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Preference number: 5 (lower is better) Translates to: RWGCMPVSAQESEPEAILLLITS*AVLLTP Trigger: TGGCGTCAAAAGAACTGCCAAAGATGTTATTAGCAA...TAGGATGGCCTCAGGCTCACTCTCCTGAGCACTGACAGGCATGCAGCCCCACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS GCA 90 bp | GCTTGCCGCATCCGAGCATCAGCTTCCTCCTTCTCTCTCCTCATCTaGTCATTCACTTCTTCTATCTGTTTTTCAAGTGCAGCTTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: ACRIRASASSFSLLI*SFTSSICFSSAAFP Trigger: AGGAAAAGCTGCACTTGAAAAACAGATAGAAGAAGTGAATGAGCAGATGAGGAGAGAGAAGGAGGAAGCTGATGCTCGGATGCGGCAAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000030771.12 ENSMUST00000115193.8 ENSMUST00000115195.8 |
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| CDS-3UTR CAA 90 bp | TATTATAAAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCTGTCTTTGCTTTTCTTaGGCTTCCTGCTCCTTCCGC | + |
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Preference number: 5 (lower is better) Translates to: YYKSAHTTRIACIISWLCCLCFS*ASCSFR Trigger: GCGGAAGGAGCAGGAAGCCAAAGAAAAGCAAAGACA...GCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTTTATAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR CAA 90 bp | ATTATAAAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCTTCCCACTTCCACCAGTaGACTTCTCTGCATTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: IIKVHTQPGLPALFPGSASHFHQ*TSLHSW Trigger: CCAAGAATGCAGAGAAGTCAACTGGTGGAAGTGGGA...AGCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTTTATAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR CAA 90 bp | CACAAGTTCCTAAGAGGAAACAAGGTTGTTAAAATCAGAATTCTGTCAGCAGAAGACTTCTCTGCATTCTaGGATGCTTGCCGCATCCGA | + |
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Preference number: 5 (lower is better) Translates to: HKFLRGNKVVKIRILSAEDFSAF*DACRIR Trigger: TCGGATGCGGCAAGCATCCAAGAATGCAGAGAAGTC...TTCTGCTGACAGAATTCTGATTTTAACAACCTTGTTTCCTCTTAGGAACTTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR CAA 90 bp | TATTATAAAAGTGCACACACAACCAGGATTGCCTGCATTATTTCCTGGCTCTGCTCTTTGGCAGTTCTTTaGACGCCAGAAGAAGAATGT | + |
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Preference number: 5 (lower is better) Translates to: YYKSAHTTRIACIISWLCSLAVL*TPEEEC Trigger: ACATTCTTCTTCTGGCGTCAAAAGAACTGCCAAAGA...GCAGAGCCAGGAAATAATGCAGGCAATCCTGGTTGTGTGTGCACTTTTATAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR CAA 90 bp | TTTCCTGTAATAATTCTGGCCTACAGCTATTTTGATACTAAAGTCAGCACTGTTCTCTTCCTTTTTCCTTaGTGCCCTCGTGGCTCTGTT | + |
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Preference number: 5 (lower is better) Translates to: FPVIILAYSYFDTKVSTVLFLFP*CPRGSV Trigger: AACAGAGCCACGAGGGCACAAAGGAAAAAGGAAGAG...AACAGTGCTGACTTTAGTATCAAAATAGCTGTAGGCCAGAATTATTACAGGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS-3UTR CAA 90 bp | TTTCCTGTAATAATTCTGGCCTACAGCTATTTTGATACTAAAGTCAGCACTGTTGTTTCTGTTCTTCTGTaGTCCAAGGGGTGGAATCTA | + |
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Preference number: 5 (lower is better) Translates to: FPVIILAYSYFDTKVSTVVSVLL*SKGWNL Trigger: TAGATTCCACCCCTTGGACAACAGAAGAACAGAAAC...AACAGTGCTGACTTTAGTATCAAAATAGCTGTAGGCCAGAATTATTACAGGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115193.8 |
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| CDS GCA 72 bp | GTTCCTTGTATCGCCTCATGCAGTCCTTCTTCGTCCTaGCAGGAACAGCTTCGGCTATCTTTTCCCATCGTT | + |
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Preference number: 6 (lower is better) Translates to: VPCIASCSPSSS*QEQLRLSFPIV Trigger: AACGATGGGAAAAGATAGCCGAAGCTGTTCCTGGCAGGACGAAGAAGGACTGCATGAGGCGATACAAGGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030771.12 ENSMUST00000115195.8 |
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| CDS GCA 72 bp | GTTTCTGTTCTTCTGTTGTCCAAGGGGTGGAATCTATaGAGGGACCTTCAAACCGTTCTGATGGTGCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: VSVLLLSKGWNL*RDLQTVLMVLH Trigger: GTGCAGCACCATCAGAACGGTTTGAAGGTCCCTGCATAGATTCCACCCCTTGGACAACAGAAGAACAGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030771.12 ENSMUST00000115193.8 ENSMUST00000115195.8 |
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| CDS GCA 72 bp | TCTTCCTTTTTCCTTTGTGCCCTCGTGGCTCTGTTCTaGTTTTCAATCCACTTCCTCTCATCACGGCATTCT | + |
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Preference number: 6 (lower is better) Translates to: SSFFLCALVALF*FSIHFLSSRHS Trigger: AGAATGCCGTGATGAGAGGAAGTGGATTGAAAAGCAGAACAGAGCCACGAGGGCACAAAGGAAAAAGGAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000030771.12 ENSMUST00000115193.8 ENSMUST00000115195.8 |
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