Pregenerated sensors for DNAJC19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027679Ensembl transcript IDs: ENSMUST00000011029.12, ENSMUST00000117223.4
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACACACATACATACATCTCACATTGTAGGGCAGAATCAACTACTTaGAGTTATATAGTTAGATCTCCACAGACACATGTTGGCATATAT | + |
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Preference number: 1 (lower is better) Translates to: HTHTYISHCRAESTT*SYIVRSPQTHVGIY Trigger: ATATATGCCAACATGTGTCTGTGGAGATCTAACTATATAACTTCAAGTAGTTGATTCTGCCCTACAATGTGAGATGTATGTATGTGTGTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR TCA 90 bp | GAATTGTATATACTGTTTGTATATACTGAAAAGTGTGCCTTGAGTTaGCCAGCAAATGACCTTGTGAATACGATTCTGCTTTATGAGAAG | + |
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Preference number: 1 (lower is better) Translates to: ELYILFVYTEKCALS*PANDLVNTILLYEK Trigger: CTTCTCATAAAGCAGAATCGTATTCACAAGGTCATTTGCTGGTCAACTCAAGGCACACTTTTCAGTATATACAAACAGTATATACAATTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR TCA 90 bp | GTAAACAAAACAGGCATCAGCTTCTGGGCTTTATCCACCCTCAGCCCCCATTTTAAGTGTGCCTTGAGTTaGCCAGCAAATGACCTTGTG | + |
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Preference number: 2 (lower is better) Translates to: VNKTGISFWALSTLSPHFKCALS*PANDLV Trigger: CACAAGGTCATTTGCTGGTCAACTCAAGGCACACTT...AAAATGGGGGCTGAGGGTGGATAAAGCCCAGAAGCTGATGCCTGTTTTGTTTAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR TCA 90 bp | GTAAACAAAACAGGCATCAGCTTCTGGGCTTTATCCACCCTCAGCCCCCATTTTCAGGATTACAGAAAATaGGTGGCTACCAGTAAGCAT | + |
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Preference number: 2 (lower is better) Translates to: VNKTGISFWALSTLSPHFQDYRK*VATSKH Trigger: ATGCTTACTGGTAGCCACTCATTTTCTGTAATCCTG...AAAATGGGGGCTGAGGGTGGATAAAGCCCAGAAGCTGATGCCTGTTTTGTTTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR GCA 90 bp | GTAAACAAAACAGGCATCAGCTTCTGGGCTTTATCCACCCTCAGCCCCCATTTTCTTACCTTCACAGGTTaGAGGACTTCAGTTTCTAAA | + |
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Preference number: 2 (lower is better) Translates to: VNKTGISFWALSTLSPHFLTFTG*RTSVSK Trigger: TTTAGAAACTGAAGTCCTGCAACCTGTGAAGGTAAG...AAAATGGGGGCTGAGGGTGGATAAAGCCCAGAAGCTGATGCCTGTTTTGTTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR TCA 90 bp | AACTCTATGCTTACTCATTACTGCATATGTGGATATAATCCACTGTTCTTCCCACTCTGCTTTTGGGAATaGGGGAGGGTGGTCATAAGG | + |
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Preference number: 2 (lower is better) Translates to: NSMLTHYCICGYNPLFFPLCFWE*GRVVIR Trigger: CCTTATGACCACCCTCCCTCATTCCCAAAAGCAGAG...TGGGAAGAACAGTGGATTATATCCACATATGCAGTAATGAGTAAGCATAGAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| 3UTR-3UTR TCA 90 bp | TCTTGTTTAAAGAGACAGTATCTGGCTAGTCAGCTGGCTCCTTGCATAAAGTCTGAGTTGACCAGCAAATaGCCTTGTGAATACGATTCT | + |
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Preference number: 2 (lower is better) Translates to: SCLKRQYLASQLAPCIKSELTSK*PCEYDS Trigger: AGAATCGTATTCACAAGGTCATTTGCTGGTCAACTC...AGACTTTATGCAAGGAGCCAGCTGACTAGCCAGATACTGTCTCTTTAAACAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR TCA 90 bp | AATGATCAGGACGGCTTGTCCATCTCAGTAGTGAATGAAGATGTTAATCTTACACTGAAAAGTGTGCCTTaGGTTGACCAGCAAATGACC | + |
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Preference number: 2 (lower is better) Translates to: NDQDGLSISVVNEDVNLTLKSVP*VDQQMT Trigger: GGTCATTTGCTGGTCAACTCAAGGCACACTTTTCAG...TGTAAGATTAACATCTTCATTCACTACTGAGATGGACAAGCCGTCCTGATCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR GCA 90 bp | AATGATCAGGACGGCTTGTCCATCTCAGTAGTGAATGAAGATGTTAATCTTACAAGTCAGCTGGCTCCTTaGATAAAGTCTTTTGCAGGC | + |
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Preference number: 2 (lower is better) Translates to: NDQDGLSISVVNEDVNLTSQLAP*IKSFAG Trigger: GCCTGCAAAAGACTTTATGCAAGGAGCCAGCTGACT...TGTAAGATTAACATCTTCATTCACTACTGAGATGGACAAGCCGTCCTGATCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR TCA 90 bp | TATAGAAGAAAGGGGATGGGGGAGACACAGTTTAGAGCACAGATTCTAAGTCTTCAGATCGATGGGAAATaGGATGTTTTCACACAAAAG | + |
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Preference number: 2 (lower is better) Translates to: YRRKGMGETQFRAQILSLQIDGK*DVFTQK Trigger: CTTTTGTGTGAAAACATCTCATTTCCCATCGATCTG...AAGACTTAGAATCTGTGCTCTAAACTGTGTCTCCCCCATCCCCTTTCTTCTATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| 3UTR-3UTR GCA 90 bp | AATGATCAGGACGGCTTGTCCATCTCAGTAGTGAATGAAGATGTTAATCTTACATTTTGCAGGCAAGCTTaGTTACATACACACACACAC | + |
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Preference number: 2 (lower is better) Translates to: NDQDGLSISVVNEDVNLTFCRQA*LHTHTH Trigger: GTGTGTGTGTGTATGTAAGCAAGCTTGCCTGCAAAA...TGTAAGATTAACATCTTCATTCACTACTGAGATGGACAAGCCGTCCTGATCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR GCA 90 bp | CAACAGATTTTTGTGGTCTGCTTAAAGAATCTGTTCTTACCAGTTAAAGCTACTGAGACATGGTGTCACTaGAGAGAACGTCACCATATG | + |
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Preference number: 2 (lower is better) Translates to: QQIFVVCLKNLFLPVKATETWCH*RERHHM Trigger: CATATGGTGACGTTCTCTGCAGTGACACCATGTCTC...AGTAGCTTTAACTGGTAAGAACAGATTCTTTAAGCAGACCACAAAAATCTGTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| 3UTR-3UTR TCA 90 bp | CTAAATGATCAGGACGGCTTGTCCATCTCAGTAGTGAATGAAGATGTTAATCTTACTGTTTGTATATACTaGAAAGTGTGCCTTGAGTTG | + |
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Preference number: 2 (lower is better) Translates to: LNDQDGLSISVVNEDVNLTVCIY*KVCLEL Trigger: CAACTCAAGGCACACTTTTCAGTATATACAAACAGT...AAGATTAACATCTTCATTCACTACTGAGATGGACAAGCCGTCCTGATCATTTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR TCA 90 bp | AAGCAAATACAGCTCATAGGTTTCCAAATAAGTATTCTGTCACAAGTGTCCACAATATCTTTATTTTGGTaGGACATGGTGTCACTGCAG | + |
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Preference number: 2 (lower is better) Translates to: KQIQLIGFQISILSQVSTISLFW*DMVSLQ Trigger: CTGCAGTGACACCATGTCTCACCAAAATAAAGATAT...TGTGGACACTTGTGACAGAATACTTATTTGGAAACCTATGAGCTGTATTTGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| 3UTR-3UTR GCA 90 bp | CTAAATGATCAGGACGGCTTGTCCATCTCAGTAGTGAATGAAGATGTTAATCTTTTGCATAAAGTCTTTTaGAGGCAAGCTTGCTTACAT | + |
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Preference number: 2 (lower is better) Translates to: LNDQDGLSISVVNEDVNLLHKVF*RQACLH Trigger: ATGTAAGCAAGCTTGCCTGCAAAAGACTTTATGCAA...AAGATTAACATCTTCATTCACTACTGAGATGGACAAGCCGTCCTGATCATTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR CAA 90 bp | CTGCTTTATGAGAAGATGATTTCAAAGATCATAGTTTGTTTCCTTTaGTGTAGATTGTACAGTTCCAGCTCTAGGCCAAAACACACAAAT | + |
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Preference number: 2 (lower is better) Translates to: LLYEKMISKIIVCFL*CRLYSSSSRPKHTN Trigger: ATTTGTGTGTTTTGGCCTAGAGCTGGAACTGTACAATCTACACAAAAGGAAACAAACTATGATCTTTGAAATCATCTTCTCATAAAGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR GCA 90 bp | AACTCTATGCTTACTCATTACTGCATATGTGGATATAATCCACTGTTCTTCCCAGAATACTTCGAGGTCTaGAAGCTAAATTCTTTACAT | + |
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Preference number: 2 (lower is better) Translates to: NSMLTHYCICGYNPLFFPEYFEV*KLNSLH Trigger: ATGTAAAGAATTTAGCTTGCAGACCTCGAAGTATTC...TGGGAAGAACAGTGGATTATATCCACATATGCAGTAATGAGTAAGCATAGAGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| 3UTR-3UTR CCA 90 bp | AACTCTATGCTTACTCATTACTGCATATGTGGATATAATCCACTGTTCTTCCCAACTGTAACCCGTTATTaGAAGACATTCTATCATAGA | + |
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Preference number: 2 (lower is better) Translates to: NSMLTHYCICGYNPLFFPTVTRY*KTFYHR Trigger: TCTATGATAGAATGTCTTCCAATAACGGGTTACAGT...TGGGAAGAACAGTGGATTATATCCACATATGCAGTAATGAGTAAGCATAGAGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| 3UTR GCA 72 bp | GCTGGCTCCTTGCATAAAGTCTTTTGCAGGCAAGCTTaGTTACATACACACACACACACACACACACACACA | + |
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Preference number: 3 (lower is better) Translates to: AGSLHKVFCRQA*LHTHTHTHTHT Trigger: TGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAAGCAAGCTTGCCTGCAAAAGACTTTATGCAAGGAGCCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR GCA 72 bp | TTAAAGAGACAGTATCTGGCTAGTCAGCTGGCTCCTTaGATAAAGTCTTTTGCAGGCAAGCTTGCTTACATA | + |
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Preference number: 3 (lower is better) Translates to: LKRQYLASQLAP*IKSFAGKLAYI Trigger: TATGTAAGCAAGCTTGCCTGCAAAAGACTTTATGCAAGGAGCCAGCTGACTAGCCAGATACTGTCTCTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR CAA 90 bp | TCTTGTTTAAAGAGACAGTATCTGGCTAGTCAGCTGGCTCCTTGCATAAAGTCTTTCCTTTTGTGTAGATaGTACAGTTCCAGCTCTAGG | + |
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Preference number: 3 (lower is better) Translates to: SCLKRQYLASQLAPCIKSFLLCR*YSSSSR Trigger: CCTAGAGCTGGAACTGTACAATCTACACAAAAGGAA...AGACTTTATGCAAGGAGCCAGCTGACTAGCCAGATACTGTCTCTTTAAACAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR CAA 90 bp | TCTTGTTTAAAGAGACAGTATCTGGCTAGTCAGCTGGCTCCTTGCATAAAGTCTCTCCACAGACACATGTaGGCATATATAGACTTATAC | + |
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Preference number: 3 (lower is better) Translates to: SCLKRQYLASQLAPCIKSLHRHM*AYIDLY Trigger: GTATAAGTCTATATATGCCAACATGTGTCTGTGGAG...AGACTTTATGCAAGGAGCCAGCTGACTAGCCAGATACTGTCTCTTTAAACAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR-3UTR CAA 90 bp | AAGCAAATACAGCTCATAGGTTTCCAAATAAGTATTCTGTCACAAGTGTCCACAAGGTTTAGGCCAACCTaGGATGGCCTAAAAACAAAC | + |
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Preference number: 3 (lower is better) Translates to: KQIQLIGFQISILSQVSTRFRPT*DGLKTN Trigger: GTTTGTTTTTAGGCCATCCAAGGTTGGCCTAAACCT...TGTGGACACTTGTGACAGAATACTTATTTGGAAACCTATGAGCTGTATTTGCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| 3UTR GCA 72 bp | TTGGCTCCTCCCACATACACACTTAACAGAACTCTATaGTTACTCATTACTGCATATGTGGATATAATCCAC | + |
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Preference number: 3 (lower is better) Translates to: LAPPTYTLNRTL*LLITAYVDIIH Trigger: GTGGATTATATCCACATATGCAGTAATGAGTAAGCATAGAGTTCTGTTAAGTGTGTATGTGGGAGGAGCCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| 3UTR GCA 72 bp | ACTCTACTACCATCCAGAACAGAATACTTCGAGGTCTaGAAGCTAAATTCTTTACATTGTGAAGTCACATAC | + |
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Preference number: 3 (lower is better) Translates to: TLLPSRTEYFEV*KLNSLHCEVTY Trigger: GTATGTGACTTCACAATGTAAAGAATTTAGCTTGCAGACCTCGAAGTATTCTGTTCTGGATGGTAGTAGAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| 3UTR TCA 72 bp | ACATACATCTCACATTGTAGGGCAGAATCAACTACTTaGAGTTATATAGTTAGATCTCCACAGACACATGTT | + |
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Preference number: 3 (lower is better) Translates to: TYISHCRAESTT*SYIVRSPQTHV Trigger: AACATGTGTCTGTGGAGATCTAACTATATAACTTCAAGTAGTTGATTCTGCCCTACAATGTGAGATGTATGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR TCA 72 bp | ATACTTAACACAAACAAGGGCAAGGTAGCCACATGTTaGATATTCTTGTTTATTGTGGTAATGTTGTTGGGT | + |
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Preference number: 3 (lower is better) Translates to: ILNTNKGKVATC*IFLFIVVMLLG Trigger: ACCCAACAACATTACCACAATAAACAAGAATATTCAACATGTGGCTACCTTGCCCTTGTTTGTGTTAAGTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| CDS-3UTR TCA 90 bp | TCTTGTTTAAAGAGACAGTATCTGGCTAGTCAGCTGGCTCCTTGCATAAAGTCTGGTTTGACAGGTGTATaGATGCCTGTGTGTGCGCGC | + |
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Preference number: 4 (lower is better) Translates to: SCLKRQYLASQLAPCIKSGLTGV*MPVCAR Trigger: GCGCGCACACACAGGCATTCATACACCTGTCAAACC...AGACTTTATGCAAGGAGCCAGCTGACTAGCCAGATACTGTCTCTTTAAACAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| CDS-3UTR GCA 90 bp | TCTTGTTTAAAGAGACAGTATCTGGCTAGTCAGCTGGCTCCTTGCATAAAGTCTATGAATGCCTGTGTGTaGGCGCGAGTGCACACACAC | + |
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Preference number: 4 (lower is better) Translates to: SCLKRQYLASQLAPCIKSMNACV*ARVHTH Trigger: GTGTGTGTGCACTCGCGCGCACACACAGGCATTCAT...AGACTTTATGCAAGGAGCCAGCTGACTAGCCAGATACTGTCTCTTTAAACAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| CDS-3UTR CCA 90 bp | GTAAACAAAACAGGCATCAGCTTCTGGGCTTTATCCACCCTCAGCCCCCATTTTGCTCCACATGCTTCATaGCTTGTAAAACATAACGGC | + |
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Preference number: 4 (lower is better) Translates to: VNKTGISFWALSTLSPHFAPHAS*LVKHNG Trigger: GCCGTTATGTTTTACAAGCCATGAAGCATGTGGAGC...AAAATGGGGGCTGAGGGTGGATAAAGCCCAGAAGCTGATGCCTGTTTTGTTTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| 3UTR CAA 72 bp | TCTTTGATAACCCTGGTATTATTTGAGTCAGCTACCTaGCCCCCAATACACTGTGTTCCATCAATTTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: SLITLVLFESAT*PPIHCVPSILR Trigger: CCTCAAAATTGATGGAACACAGTGTATTGGGGGCAAGGTAGCTGACTCAAATAATACCAGGGTTATCAAAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| CDS-3UTR CCA 90 bp | GTTGTTCATTATATCTTTATTTTGGTGAGACATGGTGTCACTGCAGAGAACGTCGCTCCACATGCTTCATaGCTTGTAAAACATAACGGC | + |
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Preference number: 4 (lower is better) Translates to: VVHYIFILVRHGVTAENVAPHAS*LVKHNG Trigger: GCCGTTATGTTTTACAAGCCATGAAGCATGTGGAGC...GACGTTCTCTGCAGTGACACCATGTCTCACCAAAATAAAGATATAATGAACAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| CDS-3UTR CCA 90 bp | AATGATCAGGACGGCTTGTCCATCTCAGTAGTGAATGAAGATGTTAATCTTACATGCGACAGATTGGTATaGGTTTCAGACCTTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: NDQDGLSISVVNEDVNLTCDRLV*VSDLLP Trigger: TGGAAGAAGGTCTGAAACCCATACCAATCTGTCGCA...TGTAAGATTAACATCTTCATTCACTACTGAGATGGACAAGCCGTCCTGATCATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| CDS-3UTR CCA 90 bp | GTTGTTCATTATATCTTTATTTTGGTGAGACATGGTGTCACTGCAGAGAACGTCAATGTGATCCACAACTaGGAAACTGCTCACACACAG | + |
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Preference number: 4 (lower is better) Translates to: VVHYIFILVRHGVTAENVNVIHN*ETAHTQ Trigger: CTGTGTGTGAGCAGTTTCCCAGTTGTGGATCACATT...GACGTTCTCTGCAGTGACACCATGTCTCACCAAAATAAAGATATAATGAACAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| CDS-3UTR GCA 90 bp | AACTCTATGCTTACTCATTACTGCATATGTGGATATAATCCACTGTTCTTCCCACCACAACTGGGAAACTaGTCACACACAGACATTCAT | + |
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Preference number: 4 (lower is better) Translates to: NSMLTHYCICGYNPLFFPPQLGN*SHTDIH Trigger: ATGAATGTCTGTGTGTGAGCAGTTTCCCAGTTGTGG...TGGGAAGAACAGTGGATTATATCCACATATGCAGTAATGAGTAAGCATAGAGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117223.4 |
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| CDS-3UTR CAA 90 bp | GTAAACAAAACAGGCATCAGCTTCTGGGCTTTATCCACCCTCAGCCCCCATTTTAGCAGCTGCGACAGATaGGTATGGGTTTCAGACCTT | + |
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Preference number: 5 (lower is better) Translates to: VNKTGISFWALSTLSPHFSSCDR*VWVSDL Trigger: AAGGTCTGAAACCCATACCAATCTGTCGCAGCTGCT...AAAATGGGGGCTGAGGGTGGATAAAGCCCAGAAGCTGATGCCTGTTTTGTTTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| CDS-3UTR CAA 90 bp | AATGATCAGGACGGCTTGTCCATCTCAGTAGTGAATGAAGATGTTAATCTTACATGGAACGTCTGCAGATaGATGAGCAGCTGCGACAGA | + |
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Preference number: 5 (lower is better) Translates to: NDQDGLSISVVNEDVNLTWNVCR*MSSCDR Trigger: TCTGTCGCAGCTGCTCATCAATCTGCAGACGTTCCA...TGTAAGATTAACATCTTCATTCACTACTGAGATGGACAAGCCGTCCTGATCATT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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| CDS-3UTR CAA 90 bp | TCTTGTTTAAAGAGACAGTATCTGGCTAGTCAGCTGGCTCCTTGCATAAAGTCTAAAAGGGTTTTTGTTTaGATCGTAGGAAGTGGAACA | + |
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Preference number: 5 (lower is better) Translates to: SCLKRQYLASQLAPCIKSKRVFV*IVGSGT Trigger: TGTTCCACTTCCTACGATCAAAACAAAAACCCTTTT...AGACTTTATGCAAGGAGCCAGCTGACTAGCCAGATACTGTCTCTTTAAACAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011029.12 |
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