RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DNAJC16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040697

Ensembl transcript IDs: ENSMUST00000038014.11, ENSMUST00000153880.2

Found 205 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGGAAGGGGACGGGCAGGGAAGTGCACGCAGGGTCACAGGGCTCTaGGCCTCCAGCCAGTGCTCACCCTCCCTCTCGGTCGGGAGACTA +
Preference number: 1 (lower is better)
Translates to: REGDGQGSARRVTGL*ASSQCSPSLSVGRL
Trigger: TAGTCTCCCGACCGAGAGGGAGGGTGAGCACTGGCTGGAGGCGCAGAGCCCTGTGACCCTGCGTGCACTTCCCTGCCCGTCCCCTTCCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 90 bp TGGCAAGGCAGACACCCTGGCTGTGCTGGTGCTGACAGAGTGCGGTaGGGGAAGGGGACGGGCAGGGAAGTGCACGCAGGGTCACAGGGC +
Preference number: 1 (lower is better)
Translates to: WQGRHPGCAGADRVR*GKGTGREVHAGSQG
Trigger: GCCCTGTGACCCTGCGTGCACTTCCCTGCCCGTCCCCTTCCCTCACCGCACTCTGTCAGCACCAGCACAGCCAGGGTGTCTGCCTTGCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 90 bp GCCACTCCAGTGCTGGCAAGGCAGACACCCTGGCTGTGCTGGTGCTaGCAGAGTGCGGTGAGGGAAGGGGACGGGCAGGGAAGTGCACGC +
Preference number: 1 (lower is better)
Translates to: ATPVLARQTPWLCWC*QSAVREGDGQGSAR
Trigger: GCGTGCACTTCCCTGCCCGTCCCCTTCCCTCACCGCACTCTGTCAGCACCAGCACAGCCAGGGTGTCTGCCTTGCCAGCACTGGAGTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR GCA 90 bp AGTGCTGGCAAGGCAGACACCCTGGCTGTGCTGGTGCTGACAGAGTaGGGTGAGGGAAGGGGACGGGCAGGGAAGTGCACGCAGGGTCAC +
Preference number: 1 (lower is better)
Translates to: SAGKADTLAVLVLTE*GEGRGRAGKCTQGH
Trigger: GTGACCCTGCGTGCACTTCCCTGCCCGTCCCCTTCCCTCACCGCACTCTGTCAGCACCAGCACAGCCAGGGTGTCTGCCTTGCCAGCACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 90 bp AAAAAGGCCTCTGGGGACAGGTCAGCAGCTCAGCCACTCCAGTGCTaGCAAGGCAGACACCCTGGCTGTGCTGGTGCTGACAGAGTGCGG +
Preference number: 1 (lower is better)
Translates to: KKASGDRSAAQPLQC*QGRHPGCAGADRVR
Trigger: CCGCACTCTGTCAGCACCAGCACAGCCAGGGTGTCTGCCTTGCCAGCACTGGAGTGGCTGAGCTGCTGACCTGTCCCCAGAGGCCTTTTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR GCA 90 bp AGCAAAAAGGCCTCTGGGGACAGGTCAGCAGCTCAGCCACTCCAGTaGTGGCAAGGCAGACACCCTGGCTGTGCTGGTGCTGACAGAGTG +
Preference number: 1 (lower is better)
Translates to: SKKASGDRSAAQPLQ*WQGRHPGCAGADRV
Trigger: CACTCTGTCAGCACCAGCACAGCCAGGGTGTCTGCCTTGCCAGCACTGGAGTGGCTGAGCTGCTGACCTGTCCCCAGAGGCCTTTTTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 90 bp TCTTTTGAAGACGGAGGACCTAGAAGCCGTGGTGGCTTCCCGTGTTaGGAGCACACACCTTGGCAGAGGCCAAGCAGGGGCCAGCAGGAG +
Preference number: 1 (lower is better)
Translates to: SFEDGGPRSRGGFPC*EHTPWQRPSRGQQE
Trigger: CTCCTGCTGGCCCCTGCTTGGCCTCTGCCAAGGTGTGTGCTCTCAACACGGGAAGCCACCACGGCTTCTAGGTCCTCCGTCTTCAAAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 90 bp GCTCAGGGTCAAGCCCTGGGTTTCTGCAGTGTAAGGACAGGGGTGTaGGCACGTTATAGGGACAGCAGAGAAGAGGGGCTGGGCAGTCTA +
Preference number: 1 (lower is better)
Translates to: AQGQALGFCSVRTGV*ARYRDSREEGLGSL
Trigger: TAGACTGCCCAGCCCCTCTTCTCTGCTGTCCCTATAACGTGCTCACACCCCTGTCCTTACACTGCAGAAACCCAGGGCTTGACCCTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 90 bp ACAGGGAGAGTGGCCTCCTCCAATGTCTCAGGCAGCTTATTAACTTaGGTTAGGCCAACCGCAGGTGATCCCAGCAGCAGGGAGAGGGCA +
Preference number: 1 (lower is better)
Translates to: TGRVASSNVSGSLLT*VRPTAGDPSSRERA
Trigger: TGCCCTCTCCCTGCTGCTGGGATCACCTGCGGTTGGCCTAACCCAAGTTAATAAGCTGCCTGAGACATTGGAGGAGGCCACTCTCCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 90 bp TCAAGGTGCGTGGAGCCAGGCGAACTGGAGCTGATGGGTGTGATCTaGCAGCGGGAAGCAGCAATAAGGGAAGGAGGAAACAGTGAAGCA +
Preference number: 1 (lower is better)
Translates to: SRCVEPGELELMGVI*QREAAIREGGNSEA
Trigger: TGCTTCACTGTTTCCTCCTTCCCTTATTGCTGCTTCCCGCTGCCAGATCACACCCATCAGCTCCAGTTCGCCTGGCTCCACGCACCTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 90 bp TGTGATCTGGCAGCGGGAAGCAGCAATAAGGGAAGGAGGAAACAGTaGAGCAGGGACGCCAGAAGGAGGATGCTAGCTAGCTGCCTACTG +
Preference number: 1 (lower is better)
Translates to: CDLAAGSSNKGRRKQ*SRDARRRMLASCLL
Trigger: CAGTAGGCAGCTAGCTAGCATCCTCCTTCTGGCGTCCCTGCTTCACTGTTTCCTCCTTCCCTTATTGCTGCTTCCCGCTGCCAGATCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 90 bp TATCCTCAGCCTCCAGGAGCCAAGACTGCCTTCACCCTTTCTAGCTaGGCCAGGCACACGAGAACCATGGAGAATCGGCATGTACTGCTA +
Preference number: 1 (lower is better)
Translates to: YPQPPGAKTAFTLSS*ARHTRTMENRHVLL
Trigger: TAGCAGTACATGCCGATTCTCCATGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGGCTCCTGGAGGCTGAGGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 90 bp TGGCTCCTAGTATCAAACTCTAAAACCCAGAAGCAAAAAGGCCTCTaGGGACAGGTCAGCAGCTCAGCCACTCCAGTGCTGGCAAGGCAG +
Preference number: 1 (lower is better)
Translates to: WLLVSNSKTQKQKGL*GQVSSSATPVLARQ
Trigger: CTGCCTTGCCAGCACTGGAGTGGCTGAGCTGCTGACCTGTCCCCAGAGGCCTTTTTGCTTCTGGGTTTTAGAGTTTGATACTAGGAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR GCA 90 bp ATCACTGGGGATCAAATCAAGAGGATCACATACTCCCTAGGCAAGTaGTTTACCGCTGAGCTTGAGCCCCAGATGGTCTTCTACTTTGAA +
Preference number: 1 (lower is better)
Translates to: ITGDQIKRITYSLGK*FTAELEPQMVFYFE
Trigger: TTCAAAGTAGAAGACCATCTGGGGCTCAAGCTCAGCGGTAAAGCACTTGCCTAGGGAGTATGTGATCCTCTTGATTTGATCCCCAGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 90 bp GTCTCCGCTCACAGTCACAAGAGACGACCTGAAGATTCAGCTCTTTaGGGACAACAATGTTCAAAATGCAATTGTCAGAGAGGTCAGGTT +
Preference number: 1 (lower is better)
Translates to: VSAHSHKRRPEDSAL*GQQCSKCNCQRGQV
Trigger: AACCTGACCTCTCTGACAATTGCATTTTGAACATTGTTGTCCCCAAAGAGCTGAATCTTCAGGTCGTCTCTTGTGACTGTGAGCGGAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 90 bp GAAGATGTTCATCTAGTGGTCAAACCTGCGTGCTTTACTCCTAGGTaGCAGAGGAAAGGTCTTCTAGCCATGGCTCTAGAAGAGAAATCT +
Preference number: 1 (lower is better)
Translates to: EDVHLVVKPACFTPR*QRKGLLAMALEEKS
Trigger: AGATTTCTCTTCTAGAGCCATGGCTAGAAGACCTTTCCTCTGTCACCTAGGAGTAAAGCACGCAGGTTTGACCACTAGATGAACATCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 90 bp TACCACTGGAGCTCAGTGTTTAAAGTAGTCAGGATCCGAGGTGCTTaGTTCAAAGCAATTACAACTGGAGAATACTCACTGAGTGAATGT +
Preference number: 1 (lower is better)
Translates to: YHWSSVFKVVRIRGA*FKAITTGEYSLSEC
Trigger: ACATTCACTCAGTGAGTATTCTCCAGTTGTAATTGCTTTGAACCAAGCACCTCGGATCCTGACTACTTTAAACACTGAGCTCCAGTGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 90 bp CTCTATAGCAGCTTATCTATGTTCAGAGAACAAGATCACAGGATATaGCTCCTAGTATCAAACTCTAAAACCCAGAAGCAAAAAGGCCTC +
Preference number: 1 (lower is better)
Translates to: LYSSLSMFREQDHRI*LLVSNSKTQKQKGL
Trigger: GAGGCCTTTTTGCTTCTGGGTTTTAGAGTTTGATACTAGGAGCCATATCCTGTGATCTTGTTCTCTGAACATAGATAAGCTGCTATAGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR TCA 90 bp CCCAGCAGCAGGGAGAGGGCACCCCACAGACTGACTGGACTTTCCCCCAGCTACGCTGACAGAGTGCGGTaGGGGAAGGGGACGGGCAGG +
Preference number: 2 (lower is better)
Translates to: PSSRERAPHRLTGLSPSYADRVR*GKGTGR
Trigger: CCTGCCCGTCCCCTTCCCTCACCGCACTCTGTCAGC...GTAGCTGGGGGAAAGTCCAGTCAGTCTGTGGGGTGCCCTCTCCCTGCTGCTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp CAGGAGCCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCAGCCCTGAGCTCAAGGTaGGTGGAGCCAGGCGAACTG +
Preference number: 2 (lower is better)
Translates to: QEPRLPSPFLAGPGTREPALSSR*VEPGEL
Trigger: CAGTTCGCCTGGCTCCACGCACCTTGAGCTCAGGGC...TGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGGCTCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CCA 90 bp CCCCCAGCTACTGAACATGACTCACAGGCTGCCTTGAGCAGATACCCACTCCTCGTGAGACACTGGGGGTaGACCCCAGGCTTTGCACTT +
Preference number: 2 (lower is better)
Translates to: PPATEHDSQAALSRYPLLVRHWG*TPGFAL
Trigger: AAGTGCAAAGCCTGGGGTCCACCCCCAGTGTCTCAC...GAGGAGTGGGTATCTGCTCAAGGCAGCCTGTGAGTCATGTTCAGTAGCTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp CCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCATGGAGAAGGATGCTAGCTAGCTaGCTACTGACAGGAGTCCGG +
Preference number: 2 (lower is better)
Translates to: PRLPSPFLAGPGTREPWRRMLAS*LLTGVR
Trigger: CCGGACTCCTGTCAGTAGGCAGCTAGCTAGCATCCT...TCTCCATGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp CAGGAGCCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCAATACTTCTCACTGCTTaGTCCCAGAAGCACAACCAC +
Preference number: 2 (lower is better)
Translates to: QEPRLPSPFLAGPGTREPILLTA*SQKHNH
Trigger: GTGGTTGTGCTTCTGGGAGCAAGCAGTGAGAAGTAT...TGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGGCTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp CCCAGCAGCAGGGAGAGGGCACCCCACAGACTGACTGGACTTTCCCCCAGCTACAAATATACTTCTCACTaGTTGCTCCCAGAAGCACAA +
Preference number: 2 (lower is better)
Translates to: PSSRERAPHRLTGLSPSYKYTSH*LLPEAQ
Trigger: TTGTGCTTCTGGGAGCAAGCAGTGAGAAGTATATTT...GTAGCTGGGGGAAAGTCCAGTCAGTCTGTGGGGTGCCCTCTCCCTGCTGCTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp GTGCCCTTCCCTTTACAAAAGGGCACTTGCTTGACAGTAGAACACATCATGTGTTGCGCCTCCAGCCAGTaGTCACCCTCCCTCTCGGTC +
Preference number: 2 (lower is better)
Translates to: VPFPLQKGTCLTVEHIMCCASSQ*SPSLSV
Trigger: GACCGAGAGGGAGGGTGAGCACTGGCTGGAGGCGCA...ACACATGATGTGTTCTACTGTCAAGCAAGTGCCCTTTTGTAAAGGGAAGGGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp ACTCCTCACACAGCAGTATCTGAGCCGAAATTGGGTCCTGTGAGACTACATTCACTGGTGCTGACAGAGTaGGGTGAGGGAAGGGGACGG +
Preference number: 2 (lower is better)
Translates to: TPHTAVSEPKLGPVRLHSLVLTE*GEGRGR
Trigger: CCGTCCCCTTCCCTCACCGCACTCTGTCAGCACCAG...TGAATGTAGTCTCACAGGACCCAATTTCGGCTCAGATACTGCTGTGTGAGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp CCCCCAGCTACTGAACATGACTCACAGGCTGCCTTGAGCAGATACCCACTCCTCCCGGTCCCTGATTTGTaGCCTTCCCTTTACAAAAGG +
Preference number: 2 (lower is better)
Translates to: PPATEHDSQAALSRYPLLPVPDL*PSLYKR
Trigger: CCTTTTGTAAAGGGAAGGGCACAAATCAGGGACCGG...GAGGAGTGGGTATCTGCTCAAGGCAGCCTGTGAGTCATGTTCAGTAGCTGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CCA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCGGCTTTGCACTTGCCTaGCAAGTGTTCTACCCCAGC +
Preference number: 2 (lower is better)
Translates to: LPPGTAILSNNGSRFCPAGFALA*QVFYPS
Trigger: GCTGGGGTAGAACACTTGCCAGGCAAGTGCAAAGCC...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR TCA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCGGGCAGATGGAAGAATaGAGCCTGGCAGTGTTTTCT +
Preference number: 2 (lower is better)
Translates to: LPPGTAILSNNGSRFCPAGQMEE*SLAVFS
Trigger: AGAAAACACTGCCAGGCTTCATTCTTCCATCTGCCC...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp GAGACTAAATGTGAATGCTGCACCTTCACCCCCTGCTCACCCCTTTCTTCTCAACAAGCCCTGGGTTTCTaGAGTGTAAGGACAGGGGTG +
Preference number: 2 (lower is better)
Translates to: ETKCECCTFTPCSPLSSQQALGF*SVRTGV
Trigger: CACCCCTGTCCTTACACTGCAGAAACCCAGGGCTTG...TTGAGAAGAAAGGGGTGAGCAGGGGGTGAAGGTGCAGCATTCACATTTAGTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CCA 90 bp ACTCCTCACACAGCAGTATCTGAGCCGAAATTGGGTCCTGTGAGACTACATTCACTGTGTGTGAGACACTaGGGGTGGACCCCAGGCTTT +
Preference number: 2 (lower is better)
Translates to: TPHTAVSEPKLGPVRLHSLCVRH*GWTPGF
Trigger: AAAGCCTGGGGTCCACCCCCAGTGTCTCACACACAG...TGAATGTAGTCTCACAGGACCCAATTTCGGCTCAGATACTGCTGTGTGAGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR TCA 90 bp CAGGAGCCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCAAAGCTAAAGACTCTTTaGAAACTACAGAGTTCCTGG +
Preference number: 2 (lower is better)
Translates to: QEPRLPSPFLAGPGTREPKLKTL*KLQSSW
Trigger: CCAGGAACTCTGTAGTTTTCAAAGAGTCTTTAGCTT...TGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGGCTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp CTCTTTGGGGACAACAATGTTCAAAATGCAATTGTCAGAGAGGTCAGGTTCCTTAGGGTCACAGGGCTCTaGGCCTCCAGCCAGTGCTCA +
Preference number: 2 (lower is better)
Translates to: LFGDNNVQNAIVREVRFLRVTGL*ASSQCS
Trigger: TGAGCACTGGCTGGAGGCGCAGAGCCCTGTGACCCT...AAGGAACCTGACCTCTCTGACAATTGCATTTTGAACATTGTTGTCCCCAAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp CCTGCTCATGCTAAGGATGACCCCCAAGTCCGGATTTTCCTGCCTCTGCTTCCCGTGGGTAGGACTAAGTaGTGCCATCTTAAATCTACT +
Preference number: 2 (lower is better)
Translates to: PAHAKDDPQVRIFLPLLPVGRTK*CHLKST
Trigger: AGTAGATTTAAGATGGCAGCACTTAGTCCTACCCAC...GGGAAGCAGAGGCAGGAAAATCCGGACTTGGGGGTCATCCTTAGCATGAGCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp ACTCCTCACACAGCAGTATCTGAGCCGAAATTGGGTCCTGTGAGACTACATTCACCCAGGCTTTGCACTTaGCTGGCAAGTGTTCTACCC +
Preference number: 2 (lower is better)
Translates to: TPHTAVSEPKLGPVRLHSPRLCT*LASVLP
Trigger: GGGTAGAACACTTGCCAGGCAAGTGCAAAGCCTGGG...TGAATGTAGTCTCACAGGACCCAATTTCGGCTCAGATACTGCTGTGTGAGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CCA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCAACTGTTTTGGGTGTTaGCAAGTGACAGGGAGAGTG +
Preference number: 2 (lower is better)
Translates to: LPPGTAILSNNGSRFCPANCFGC*QVTGRV
Trigger: CACTCTCCCTGTCACTTGCCAACACCCAAAACAGTT...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CCA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCTCCAAACTCCCCTCATaGGTTGGCTCTAAAAACAAG +
Preference number: 2 (lower is better)
Translates to: LPPGTAILSNNGSRFCPASKLPS*VGSKNK
Trigger: CTTGTTTTTAGAGCCAACCCATGAGGGGAGTTTGGA...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR TCA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCCTACATTCATTAGGATaGGAAACCTTGGCATTTGGC +
Preference number: 2 (lower is better)
Translates to: LPPGTAILSNNGSRFCPALHSLG*ETLAFG
Trigger: GCCAAATGCCAAGGTTTCTCATCCTAATGAATGTAG...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CCA 90 bp GAGTTTTTGGTTTTCAGAAATTACATGTCAAGGGATTTGACCGGTTCCAGAAACCAGCCACTCCAGTGCTaGCAAGGCAGACACCCTGGC +
Preference number: 2 (lower is better)
Translates to: EFLVFRNYMSRDLTGSRNQPLQC*QGRHPG
Trigger: GCCAGGGTGTCTGCCTTGCCAGCACTGGAGTGGCTG...GTTTCTGGAACCGGTCAAATCCCTTGACATGTAATTTCTGAAAACCAAAAACTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CCA 90 bp CCTGCTCATGCTAAGGATGACCCCCAAGTCCGGATTTTCCTGCCTCTGCTTCCCAAGAGAACAAACATCTaGGGAGTTTTTGGTTTTCAG +
Preference number: 2 (lower is better)
Translates to: PAHAKDDPQVRIFLPLLPKRTNI*GVFGFQ
Trigger: CTGAAAACCAAAAACTCCCCAGATGTTTGTTCTCTT...GGGAAGCAGAGGCAGGAAAATCCGGACTTGGGGGTCATCCTTAGCATGAGCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR TCA 90 bp CCAAAATATACTTCTCACTGCTTGCTCCCAGAAGCACAACCACATAGAAAACTGGTAAGGACAGGGGTGTaGGCACGTTATAGGGACAGC +
Preference number: 2 (lower is better)
Translates to: PKYTSHCLLPEAQPHRKLVRTGV*ARYRDS
Trigger: GCTGTCCCTATAACGTGCTCACACCCCTGTCCTTAC...CAGTTTTCTATGTGGTTGTGCTTCTGGGAGCAAGCAGTGAGAAGTATATTTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CCA 90 bp CTCTTTGGGGACAACAATGTTCAAAATGCAATTGTCAGAGAGGTCAGGTTCCTTAAGCAAAAAGGCCTCTaGGGACAGGTCAGCAGCTCA +
Preference number: 2 (lower is better)
Translates to: LFGDNNVQNAIVREVRFLKQKGL*GQVSSS
Trigger: TGAGCTGCTGACCTGTCCCCAGAGGCCTTTTTGCTT...AAGGAACCTGACCTCTCTGACAATTGCATTTTGAACATTGTTGTCCCCAAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp ACTCCTCACACAGCAGTATCTGAGCCGAAATTGGGTCCTGTGAGACTACATTCACAAGCAAATCAAAGTTaGATGATGTCCTTGGTAGAT +
Preference number: 2 (lower is better)
Translates to: TPHTAVSEPKLGPVRLHSQANQS*MMSLVD
Trigger: ATCTACCAAGGACATCATGCAACTTTGATTTGCTTG...TGAATGTAGTCTCACAGGACCCAATTTCGGCTCAGATACTGCTGTGTGAGGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR GCA 90 bp GAGTTTTTGGTTTTCAGAAATTACATGTCAAGGGATTTGACCGGTTCCAGAAACACTAAATGTGAATGCTaGACCTTCACCCCCTGCTCA +
Preference number: 2 (lower is better)
Translates to: EFLVFRNYMSRDLTGSRNTKCEC*TFTPCS
Trigger: TGAGCAGGGGGTGAAGGTGCAGCATTCACATTTAGT...GTTTCTGGAACCGGTCAAATCCCTTGACATGTAATTTCTGAAAACCAAAAACTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR TCA 90 bp GAGTTTTTGGTTTTCAGAAATTACATGTCAAGGGATTTGACCGGTTCCAGAAACTGCTTTACTCCTAGGTaGCAGAGGAAAGGTCTTCTA +
Preference number: 2 (lower is better)
Translates to: EFLVFRNYMSRDLTGSRNCFTPR*QRKGLL
Trigger: TAGAAGACCTTTCCTCTGTCACCTAGGAGTAAAGCA...GTTTCTGGAACCGGTCAAATCCCTTGACATGTAATTTCTGAAAACCAAAAACTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR GCA 72 bp GACGGGCAGGGAAGTGCACGCAGGGTCACAGGGCTCTaGGCCTCCAGCCAGTGCTCACCCTCCCTCTCGGTC +
Preference number: 3 (lower is better)
Translates to: DGQGSARRVTGL*ASSQCSPSLSV
Trigger: GACCGAGAGGGAGGGTGAGCACTGGCTGGAGGCGCAGAGCCCTGTGACCCTGCGTGCACTTCCCTGCCCGTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 72 bp GTGCTGGCAAGGCAGACACCCTGGCTGTGCTGGTGCTaGCAGAGTGCGGTGAGGGAAGGGGACGGGCAGGGA +
Preference number: 3 (lower is better)
Translates to: VLARQTPWLCWC*QSAVREGDGQG
Trigger: TCCCTGCCCGTCCCCTTCCCTCACCGCACTCTGTCAGCACCAGCACAGCCAGGGTGTCTGCCTTGCCAGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR GCA 72 bp GCCTCTGGGGACAGGTCAGCAGCTCAGCCACTCCAGTaGTGGCAAGGCAGACACCCTGGCTGTGCTGGTGCT +
Preference number: 3 (lower is better)
Translates to: ASGDRSAAQPLQ*WQGRHPGCAGA
Trigger: AGCACCAGCACAGCCAGGGTGTCTGCCTTGCCAGCACTGGAGTGGCTGAGCTGCTGACCTGTCCCCAGAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 72 bp GACGGAGGACCTAGAAGCCGTGGTGGCTTCCCGTGTTaGGAGCACACACCTTGGCAGAGGCCAAGCAGGGGC +
Preference number: 3 (lower is better)
Translates to: DGGPRSRGGFPC*EHTPWQRPSRG
Trigger: GCCCCTGCTTGGCCTCTGCCAAGGTGTGTGCTCTCAACACGGGAAGCCACCACGGCTTCTAGGTCCTCCGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp TCTGGGGACAGGTCAGCAGCTCAGCCACTCCAGTGCTaGCAAGGCAGACACCCTGGCTGTGCTGGTGCTGAC +
Preference number: 3 (lower is better)
Translates to: SGDRSAAQPLQC*QGRHPGCAGAD
Trigger: GTCAGCACCAGCACAGCCAGGGTGTCTGCCTTGCCAGCACTGGAGTGGCTGAGCTGCTGACCTGTCCCCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp TCCCAGCAGCAGGGAGAGGGCACCCCACAGACTGACTaGACTTTCCCCCAGCTACTGAACATGACTCACAGG +
Preference number: 3 (lower is better)
Translates to: SQQQGEGTPQTD*TFPQLLNMTHR
Trigger: CCTGTGAGTCATGTTCAGTAGCTGGGGGAAAGTCCAGTCAGTCTGTGGGGTGCCCTCTCCCTGCTGCTGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CAA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCCAGGAGGGCCTTGAGTaGGAGGCCAGCCTGGGCTAC +
Preference number: 3 (lower is better)
Translates to: LPPGTAILSNNGSRFCPAQEGLE*EASLGY
Trigger: GTAGCCCAGGCTGGCCTCCAACTCAAGGCCCTCCTG...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp CCTCCAGGAGCCAAGACTGCCTTCACCCTTTCTAGCTaGGCCAGGCACACGAGAACCATGGAGAATCGGCAT +
Preference number: 3 (lower is better)
Translates to: PPGAKTAFTLSS*ARHTRTMENRH
Trigger: ATGCCGATTCTCCATGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGGCTCCTGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CAA 90 bp CCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCATGGAGAATGCTTGGCCGACTGTaGTGGGGGATACCCCCAAAA +
Preference number: 3 (lower is better)
Translates to: PRLPSPFLAGPGTREPWRMLGRL*WGIPPK
Trigger: TTTTGGGGGTATCCCCCACAACAGTCGGCCAAGCAT...TCTCCATGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CAA 90 bp CCTGCTCATGCTAAGGATGACCCCCAAGTCCGGATTTTCCTGCCTCTGCTTCCCCTGTCAAAGGTAGACTaGTGGTGCGCGCCTGGAATC +
Preference number: 3 (lower is better)
Translates to: PAHAKDDPQVRIFLPLLPLSKVD*WCAPGI
Trigger: GATTCCAGGCGCGCACCACAAGTCTACCTTTGACAG...GGGAAGCAGAGGCAGGAAAATCCGGACTTGGGGGTCATCCTTAGCATGAGCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR GCA 72 bp CTCACCCTCCCTCTCGGTCGGGAGACTAAATGTGAATaGTGCACCTTCACCCCCTGCTCACCCCTTTCTTCT +
Preference number: 3 (lower is better)
Translates to: LTLPLGRETKCE*CTFTPCSPLSS
Trigger: AGAAGAAAGGGGTGAGCAGGGGGTGAAGGTGCAGCATTCACATTTAGTCTCCCGACCGAGAGGGAGGGTGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp GTGGCCTCCTCCAATGTCTCAGGCAGCTTATTAACTTaGGTTAGGCCAACCGCAGGTGATCCCAGCAGCAGG +
Preference number: 3 (lower is better)
Translates to: VASSNVSGSLLT*VRPTAGDPSSR
Trigger: CCTGCTGCTGGGATCACCTGCGGTTGGCCTAACCCAAGTTAATAAGCTGCCTGAGACATTGGAGGAGGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp AGCACTACACAAGCACTCTCACGCCCCGCCCCAGTCTaGGATCATTTGTCTTATAGCCCAAGCTGGTCTCAC +
Preference number: 3 (lower is better)
Translates to: STTQALSRPAPV*DHLSYSPSWSH
Trigger: GTGAGACCAGCTTGGGCTATAAGACAAATGATCCCAGACTGGGGCGGGGCGTGAGAGTGCTTGTGTAGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CAA 90 bp GAGACTAAATGTGAATGCTGCACCTTCACCCCCTGCTCACCCCTTTCTTCTCAATTGAGAGCACACACCTaGGCAGAGGCCAAGCAGGGG +
Preference number: 3 (lower is better)
Translates to: ETKCECCTFTPCSPLSSQLRAHT*AEAKQG
Trigger: CCCCTGCTTGGCCTCTGCCAAGGTGTGTGCTCTCAA...TTGAGAAGAAAGGGGTGAGCAGGGGGTGAAGGTGCAGCATTCACATTTAGTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR GCA 72 bp AAGAAAGGCTTGTATCTGTCAAAGGTAGACTTGTGGTaGGCGCCTGGAATCCCGGTACTTGGGAGGCTGAGG +
Preference number: 3 (lower is better)
Translates to: KKGLYLSKVDLW*APGIPVLGRLR
Trigger: CCTCAGCCTCCCAAGTACCGGGATTCCAGGCGCGCACCACAAGTCTACCTTTGACAGATACAAGCCTTTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp AGCGAGGCAGGAAGGGCTCCTGCACCTAGCTCTTGGTaGGTAGGACTAAGTGCTGCCATCTTAAATCTACTG +
Preference number: 3 (lower is better)
Translates to: SEAGRAPAPSSW*VGLSAAILNLL
Trigger: CAGTAGATTTAAGATGGCAGCACTTAGTCCTACCCACCAAGAGCTAGGTGCAGGAGCCCTTCCTGCCTCGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp GAGAGCGAGGCAGGAAGGGCTCCTGCACCTAGCTCTTaGTGGGTAGGACTAAGTGCTGCCATCTTAAATCTA +
Preference number: 3 (lower is better)
Translates to: ESEAGRAPAPSS*WVGLSAAILNL
Trigger: TAGATTTAAGATGGCAGCACTTAGTCCTACCCACCAAGAGCTAGGTGCAGGAGCCCTTCCTGCCTCGCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp AGGAAGAAAGGCTTGTATCTGTCAAAGGTAGACTTGTaGTGCGCGCCTGGAATCCCGGTACTTGGGAGGCTG +
Preference number: 3 (lower is better)
Translates to: RKKGLYLSKVDL*CAPGIPVLGRL
Trigger: CAGCCTCCCAAGTACCGGGATTCCAGGCGCGCACCACAAGTCTACCTTTGACAGATACAAGCCTTTCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp GCCCCAGTCTGGGATCATTTGTCTTATAGCCCAAGCTaGTCTCACCTGCTCATGCTAAGGATGACCCCCAAG +
Preference number: 3 (lower is better)
Translates to: APVWDHLSYSPS*SHLLMLRMTPK
Trigger: CTTGGGGGTCATCCTTAGCATGAGCAGGTGAGACCAGCTTGGGCTATAAGACAAATGATCCCAGACTGGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CAA 90 bp CCCCCAGCTACTGAACATGACTCACAGGCTGCCTTGAGCAGATACCCACTCCTCAACTCCCCTCATGGGTaGGCTCTAAAAACAAGGGTA +
Preference number: 3 (lower is better)
Translates to: PPATEHDSQAALSRYPLLNSPHG*ALKTRV
Trigger: TACCCTTGTTTTTAGAGCCAACCCATGAGGGGAGTT...GAGGAGTGGGTATCTGCTCAAGGCAGCCTGTGAGTCATGTTCAGTAGCTGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CAA 90 bp CCTGCTCATGCTAAGGATGACCCCCAAGTCCGGATTTTCCTGCCTCTGCTTCCCGTATCTGAGCCGAAATaGGGTCCTGTGAGACTACAT +
Preference number: 3 (lower is better)
Translates to: PAHAKDDPQVRIFLPLLPVSEPK*GPVRLH
Trigger: ATGTAGTCTCACAGGACCCAATTTCGGCTCAGATAC...GGGAAGCAGAGGCAGGAAAATCCGGACTTGGGGGTCATCCTTAGCATGAGCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CAA 90 bp CCTGCTCATGCTAAGGATGACCCCCAAGTCCGGATTTTCCTGCCTCTGCTTCCCAAACTGTTTTGGGTGTaGGCAAGTGACAGGGAGAGT +
Preference number: 3 (lower is better)
Translates to: PAHAKDDPQVRIFLPLLPKLFWV*ASDRES
Trigger: ACTCTCCCTGTCACTTGCCAACACCCAAAACAGTTT...GGGAAGCAGAGGCAGGAAAATCCGGACTTGGGGGTCATCCTTAGCATGAGCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 72 bp GAAAACGCCAAGCAAACTGTTTTGGGTGTTGGCAAGTaGCAGGGAGAGTGGCCTCCTCCAATGTCTCAGGCA +
Preference number: 3 (lower is better)
Translates to: ENAKQTVLGVGK*QGEWPPPMSQA
Trigger: TGCCTGAGACATTGGAGGAGGCCACTCTCCCTGTCACTTGCCAACACCCAAAACAGTTTGCTTGGCGTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp GTATCAAACTCTAAAACCCAGAAGCAAAAAGGCCTCTaGGGACAGGTCAGCAGCTCAGCCACTCCAGTGCTG +
Preference number: 3 (lower is better)
Translates to: VSNSKTQKQKGL*GQVSSSATPVL
Trigger: CAGCACTGGAGTGGCTGAGCTGCTGACCTGTCCCCAGAGGCCTTTTTGCTTCTGGGTTTTAGAGTTTGATAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp AGACTGACCCTTCTGAAAACGCCAAGCAAACTGTTTTaGGTGTTGGCAAGTGACAGGGAGAGTGGCCTCCTC +
Preference number: 3 (lower is better)
Translates to: RLTLLKTPSKLF*VLASDRESGLL
Trigger: GAGGAGGCCACTCTCCCTGTCACTTGCCAACACCCAAAACAGTTTGCTTGGCGTTTTCAGAAGGGTCAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CAA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCTATACTTCTCACTGCTaGCTCCCAGAAGCACAACCA +
Preference number: 3 (lower is better)
Translates to: LPPGTAILSNNGSRFCPAYTSHC*LPEAQP
Trigger: TGGTTGTGCTTCTGGGAGCAAGCAGTGAGAAGTATA...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 72 bp CATCTAGTGGTCAAACCTGCGTGCTTTACTCCTAGGTaGCAGAGGAAAGGTCTTCTAGCCATGGCTCTAGAA +
Preference number: 3 (lower is better)
Translates to: HLVVKPACFTPR*QRKGLLAMALE
Trigger: TTCTAGAGCCATGGCTAGAAGACCTTTCCTCTGTCACCTAGGAGTAAAGCACGCAGGTTTGACCACTAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 72 bp AAAATGCAATTGTCAGAGAGGTCAGGTTCCTTGGTATaGAGACACACCTGGCGTTTTACTGGAGAGCGAGGC +
Preference number: 3 (lower is better)
Translates to: KMQLSERSGSLV*RHTWRFTGERG
Trigger: GCCTCGCTCTCCAGTAAAACGCCAGGTGTGTCTTCATACCAAGGAACCTGACCTCTCTGACAATTGCATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR TCA 72 bp CTTGGTTCAAAGCAATTACAACTGGAGAATACTCACTaGGTGAATGTCCGGTCCCTGATTTGTGCCCTTCCC +
Preference number: 3 (lower is better)
Translates to: LGSKQLQLENTH*VNVRSLICALP
Trigger: GGGAAGGGCACAAATCAGGGACCGGACATTCACTCAGTGAGTATTCTCCAGTTGTAATTGCTTTGAACCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR-3UTR CAA 90 bp GAGTTTTTGGTTTTCAGAAATTACATGTCAAGGGATTTGACCGGTTCCAGAAACTGTCCGGTCCCTGATTaGTGCCCTTCCCTTTACAAA +
Preference number: 3 (lower is better)
Translates to: EFLVFRNYMSRDLTGSRNCPVPD*CPSLYK
Trigger: TTTGTAAAGGGAAGGGCACAAATCAGGGACCGGACA...GTTTCTGGAACCGGTCAAATCCCTTGACATGTAATTTCTGAAAACCAAAAACTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CCA 72 bp AGCTCAGTGTTTAAAGTAGTCAGGATCCGAGGTGCTTaGTTCAAAGCAATTACAACTGGAGAATACTCACTG +
Preference number: 3 (lower is better)
Translates to: SSVFKVVRIRGA*FKAITTGEYSL
Trigger: CAGTGAGTATTCTCCAGTTGTAATTGCTTTGAACCAAGCACCTCGGATCCTGACTACTTTAAACACTGAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp CAGGAGCCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCAGGAGGGGGTGCTGTGTaGTCCCAGGTGATGGGCCAG +
Preference number: 4 (lower is better)
Translates to: QEPRLPSPFLAGPGTREPGGGAV*SQVMGQ
Trigger: CTGGCCCATCACCTGGGAGCACACAGCACCCCCTCC...TGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGGCTCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CCCCCAGCTACTGAACATGACTCACAGGCTGCCTTGAGCAGATACCCACTCCTCACAACCTCTGGCTGGTaGGCCGGGAGGCCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: PPATEHDSQAALSRYPLLTTSGW*AGRPAG
Trigger: ACCTGCTGGCCTCCCGGCTCACCAGCCAGAGGTTGT...GAGGAGTGGGTATCTGCTCAAGGCAGCCTGTGAGTCATGTTCAGTAGCTGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CCCCCAGCTACTGAACATGACTCACAGGCTGCCTTGAGCAGATACCCACTCCTCGACTGGCCGTGCGGCTaGCCCCTAGGACTCTGTATG +
Preference number: 4 (lower is better)
Translates to: PPATEHDSQAALSRYPLLDWPCG*PLGLCM
Trigger: CATACAGAGTCCTAGGGGTCAGCCGCACGGCCAGTC...GAGGAGTGGGTATCTGCTCAAGGCAGCCTGTGAGTCATGTTCAGTAGCTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp CCCAGCAGCAGGGAGAGGGCACCCCACAGACTGACTGGACTTTCCCCCAGCTACTGTGGCTTATTCTCCTaGTGCCAGCCAGAGAGGAAC +
Preference number: 4 (lower is better)
Translates to: PSSRERAPHRLTGLSPSYCGLFS*CQPERN
Trigger: GTTCCTCTCTGGCTGGCAGCAGGAGAATAAGCCACA...GTAGCTGGGGGAAAGTCCAGTCAGTCTGTGGGGTGCCCTCTCCCTGCTGCTGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CCCAGCAGCAGGGAGAGGGCACCCCACAGACTGACTGGACTTTCCCCCAGCTACGCTGAAGCACCAGTCTaGCGTGATCTTGATGAGGTA +
Preference number: 4 (lower is better)
Translates to: PSSRERAPHRLTGLSPSYAEAPV*RDLDEV
Trigger: TACCTCATCAAGATCACGTCAGACTGGTGCTTCAGC...GTAGCTGGGGGAAAGTCCAGTCAGTCTGTGGGGTGCCCTCTCCCTGCTGCTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CCTGCTCATGCTAAGGATGACCCCCAAGTCCGGATTTTCCTGCCTCTGCTTCCCGATCCTCCAGGGTTTTaGACACCACCCTCCCCGCTG +
Preference number: 4 (lower is better)
Translates to: PAHAKDDPQVRIFLPLLPDPPGF*TPPSPL
Trigger: CAGCGGGGAGGGTGGTGTTCAAAACCCTGGAGGATC...GGGAAGCAGAGGCAGGAAAATCCGGACTTGGGGGTCATCCTTAGCATGAGCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CCCCCAGCTACTGAACATGACTCACAGGCTGCCTTGAGCAGATACCCACTCCTCAGAGGGCCGAGAAGATaGGGGACAGCAGGGGCATCA +
Preference number: 4 (lower is better)
Translates to: PPATEHDSQAALSRYPLLRGPRR*GTAGAS
Trigger: TGATGCCCCTGCTGTCCCTCATCTTCTCGGCCCTCT...GAGGAGTGGGTATCTGCTCAAGGCAGCCTGTGAGTCATGTTCAGTAGCTGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp TGCGCCTCCAGCCAGTGCTCACCCTCCCTCTCGGTCGGGAGACTAAATGTGAATCAAGGATGGAGGGGGTaGTGTGTGCTCCCAGGTGAT +
Preference number: 4 (lower is better)
Translates to: CASSQCSPSLSVGRLNVNQGWRG*CVLPGD
Trigger: ATCACCTGGGAGCACACAGCACCCCCTCCATCCTTG...ATTCACATTTAGTCTCCCGACCGAGAGGGAGGGTGAGCACTGGCTGGAGGCGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp TGCGCCTCCAGCCAGTGCTCACCCTCCCTCTCGGTCGGGAGACTAAATGTGAATTGCTGCTCTCTTTGGTaGAGCTCGGCTCAGTCTTCC +
Preference number: 4 (lower is better)
Translates to: CASSQCSPSLSVGRLNVNCCSLW*SSAQSS
Trigger: GGAAGACTGAGCCGAGCTTCACCAAAGAGAGCAGCA...ATTCACATTTAGTCTCCCGACCGAGAGGGAGGGTGAGCACTGGCTGGAGGCGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CCA 90 bp CCCAGCAGCAGGGAGAGGGCACCCCACAGACTGACTGGACTTTCCCCCAGCTACAGCAGGTACTTGTTTTaGGCGATGAAGTCCTCGATG +
Preference number: 4 (lower is better)
Translates to: PSSRERAPHRLTGLSPSYSRYLF*AMKSSM
Trigger: CATCGAGGACTTCATCGCCCAAAACAAGTACCTGCT...GTAGCTGGGGGAAAGTCCAGTCAGTCTGTGGGGTGCCCTCTCCCTGCTGCTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp GAGACTAAATGTGAATGCTGCACCTTCACCCCCTGCTCACCCCTTTCTTCTCAACTGTGTGCTCCCAGGTaGTGGGCCAGGCGCCTTTCG +
Preference number: 4 (lower is better)
Translates to: ETKCECCTFTPCSPLSSQLCAPR*WARRLS
Trigger: CGAAAGGCGCCTGGCCCATCACCTGGGAGCACACAG...TTGAGAAGAAAGGGGTGAGCAGGGGGTGAAGGTGCAGCATTCACATTTAGTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp TGCGCCTCCAGCCAGTGCTCACCCTCCCTCTCGGTCGGGAGACTAAATGTGAATGTTTGCCAGGGCAAATaGCAGGAAGGCTTCAAAGGG +
Preference number: 4 (lower is better)
Translates to: CASSQCSPSLSVGRLNVNVCQGK*QEGFKG
Trigger: CCCTTTGAAGCCTTCCTGTCATTTGCCCTGGCAAAC...ATTCACATTTAGTCTCCCGACCGAGAGGGAGGGTGAGCACTGGCTGGAGGCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCATGGAGACAAGATGGACACCCCTaGCTTCCCCTGGAAAGCTTC +
Preference number: 4 (lower is better)
Translates to: PRLPSPFLAGPGTREPWRQDGHP*LPLESF
Trigger: GAAGCTTTCCAGGGGAAGTCAGGGGTGTCCATCTTG...TCTCCATGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp TGCGCCTCCAGCCAGTGCTCACCCTCCCTCTCGGTCGGGAGACTAAATGTGAATTGTCCGGTAGCAATGTaGTGGCAAACTCCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: CASSQCSPSLSVGRLNVNCPVAM*WQTPAV
Trigger: GACAGCAGGAGTTTGCCAGCACATTGCTACCGGACA...ATTCACATTTAGTCTCCCGACCGAGAGGGAGGGTGAGCACTGGCTGGAGGCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp CCTGCTCATGCTAAGGATGACCCCCAAGTCCGGATTTTCCTGCCTCTGCTTCCCGACTTCCTCTTTGTCTaGAGGGTGCGACTCTCGCTC +
Preference number: 4 (lower is better)
Translates to: PAHAKDDPQVRIFLPLLPDFLFV*RVRLSL
Trigger: GAGCGAGAGTCGCACCCTGCAGACAAAGAGGAAGTC...GGGAAGCAGAGGCAGGAAAATCCGGACTTGGGGGTCATCCTTAGCATGAGCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CCA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCTCATGGAACAACCTCTaGCTGGTGAGCCGGGAGGCC +
Preference number: 4 (lower is better)
Translates to: LPPGTAILSNNGSRFCPASWNNL*LVSREA
Trigger: GGCCTCCCGGCTCACCAGCCAGAGGTTGTTCCATGA...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CCA 90 bp CCTGCTCATGCTAAGGATGACCCCCAAGTCCGGATTTTCCTGCCTCTGCTTCCCGAGTCACTGAAAGCCTaGACCATGACCGTGCCGAAG +
Preference number: 4 (lower is better)
Translates to: PAHAKDDPQVRIFLPLLPESLKA*TMTVPK
Trigger: CTTCGGCACGGTCATGGTCCAGGCTTTCAGTGACTC...GGGAAGCAGAGGCAGGAAAATCCGGACTTGGGGGTCATCCTTAGCATGAGCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CAA 72 bp CAAGCACTCTCACGCCCCGCCCCAGTCTGGGATCATTaGTCTTATAGCCCAAGCTGGTCTCACCTGCTCATG +
Preference number: 4 (lower is better)
Translates to: QALSRPAPVWDH*SYSPSWSHLLM
Trigger: CATGAGCAGGTGAGACCAGCTTGGGCTATAAGACAAATGATCCCAGACTGGGGCGGGGCGTGAGAGTGCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CCCCCAGCTACTGAACATGACTCACAGGCTGCCTTGAGCAGATACCCACTCCTCCAGAAATACTTCTTGTaGCCGTTCAGGGCCAGCACG +
Preference number: 4 (lower is better)
Translates to: PPATEHDSQAALSRYPLLQKYFL*PFRAST
Trigger: CGTGCTGGCCCTGAACGGTCACAAGAAGTATTTCTG...GAGGAGTGGGTATCTGCTCAAGGCAGCCTGTGAGTCATGTTCAGTAGCTGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CCA 90 bp CCTGCTCATGCTAAGGATGACCCCCAAGTCCGGATTTTCCTGCCTCTGCTTCCCCAGACAGGCTCGATATaGATGCAGCTGAAGCACCAG +
Preference number: 4 (lower is better)
Translates to: PAHAKDDPQVRIFLPLLPQTGSI*MQLKHQ
Trigger: CTGGTGCTTCAGCTGCATCCATATCGAGCCTGTCTG...GGGAAGCAGAGGCAGGAAAATCCGGACTTGGGGGTCATCCTTAGCATGAGCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CCA 90 bp CCCCCAGCTACTGAACATGACTCACAGGCTGCCTTGAGCAGATACCCACTCCTCCAACTTGTACATCAGTaGCACTGCTGGTGTCTGGCC +
Preference number: 4 (lower is better)
Translates to: PPATEHDSQAALSRYPLLQLVHQ*HCWCLA
Trigger: GGCCAGACACCAGCAGTGCCACTGATGTACAAGTTG...GAGGAGTGGGTATCTGCTCAAGGCAGCCTGTGAGTCATGTTCAGTAGCTGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CCA 90 bp ACTCCTCACACAGCAGTATCTGAGCCGAAATTGGGTCCTGTGAGACTACATTCAGGCACTGCTGGTGTCTaGCCGAACAGGAGGGCGTGT +
Preference number: 4 (lower is better)
Translates to: TPHTAVSEPKLGPVRLHSGTAGV*PNRRAC
Trigger: ACACGCCCTCCTGTTCGGCCAGACACCAGCAGTGCC...TGAATGTAGTCTCACAGGACCCAATTTCGGCTCAGATACTGCTGTGTGAGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCTATTTTCTCTGTCGGTaGGACCGCTTCACAGGGCAG +
Preference number: 4 (lower is better)
Translates to: LPPGTAILSNNGSRFCPAYFLCR*DRFTGQ
Trigger: CTGCCCTGTGAAGCGGTCTCACCGACAGAGAAAATA...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCCTCTCGCTCCTCATTTaGGTCACTGAAAGCCTGGAC +
Preference number: 4 (lower is better)
Translates to: LPPGTAILSNNGSRFCPALSLLI*VTESLD
Trigger: GTCCAGGCTTTCAGTGACTCAAATGAGGAGCGAGAG...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp CCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCATGGAGATTGTTTTTGTCAGGATaGCATTCCCGAGCGAGCTTC +
Preference number: 4 (lower is better)
Translates to: PRLPSPFLAGPGTREPWRLFLSG*HSRASF
Trigger: GAAGCTCGCTCGGGAATGGCATCCTGACAAAAACAA...TCTCCATGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp TGCGCCTCCAGCCAGTGCTCACCCTCCCTCTCGGTCGGGAGACTAAATGTGAATTCCAAAGCAAACTTCTaGAGGAGGCTTGTCTTAGTG +
Preference number: 4 (lower is better)
Translates to: CASSQCSPSLSVGRLNVNSKANF*RRLVLV
Trigger: CACTAAGACAAGCCTCCTGCAGAAGTTTGCTTTGGA...ATTCACATTTAGTCTCCCGACCGAGAGGGAGGGTGAGCACTGGCTGGAGGCGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CAA 72 bp TTCAGGAAGAAAGGCTTGTATCTGTCAAAGGTAGACTaGTGGTGCGCGCCTGGAATCCCGGTACTTGGGAGG +
Preference number: 4 (lower is better)
Translates to: FRKKGLYLSKVD*WCAPGIPVLGR
Trigger: CCTCCCAAGTACCGGGATTCCAGGCGCGCACCACAAGTCTACCTTTGACAGATACAAGCCTTTCTTCCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp GTGCCCTTCCCTTTACAAAAGGGCACTTGCTTGACAGTAGAACACATCATGTGTCCCGCCGCTCCGCATTaGAGGGGAAGTGGAAAAAGG +
Preference number: 4 (lower is better)
Translates to: VPFPLQKGTCLTVEHIMCPAAPH*RGSGKR
Trigger: CCTTTTTCCACTTCCCCTTCAATGCGGAGCGGCGGG...ACACATGATGTGTTCTACTGTCAAGCAAGTGCCCTTTTGTAAAGGGAAGGGCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCAGGGAGCACAGCTTCTaGAGACAGAAATGCTGGATC +
Preference number: 4 (lower is better)
Translates to: LPPGTAILSNNGSRFCPAREHSF*RQKCWI
Trigger: GATCCAGCATTTCTGTCTTCAGAAGCTGTGCTCCCT...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp CCTGCTCATGCTAAGGATGACCCCCAAGTCCGGATTTTCCTGCCTCTGCTTCCCGTTTTCATGGACCACTaGGTTGTGGAAGAAGGTGAT +
Preference number: 4 (lower is better)
Translates to: PAHAKDDPQVRIFLPLLPVFMDH*VVEEGD
Trigger: ATCACCTTCTTCCACAACGCAGTGGTCCATGAAAAC...GGGAAGCAGAGGCAGGAAAATCCGGACTTGGGGGTCATCCTTAGCATGAGCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp GAGACTAAATGTGAATGCTGCACCTTCACCCCCTGCTCACCCCTTTCTTCTCAAACTTATCGCTCTCACTaGCGGTCCAGGGATCCTCCA +
Preference number: 4 (lower is better)
Translates to: ETKCECCTFTPCSPLSSQTYRSH*RSRDPP
Trigger: TGGAGGATCCCTGGACCGGCAGTGAGAGCGATAAGT...TTGAGAAGAAAGGGGTGAGCAGGGGGTGAAGGTGCAGCATTCACATTTAGTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CTCTTTGGGGACAACAATGTTCAAAATGCAATTGTCAGAGAGGTCAGGTTCCTTTGCTCAGCTTGCCTTTaGGGGGCTTGGGGCCAAGGC +
Preference number: 4 (lower is better)
Translates to: LFGDNNVQNAIVREVRFLCSACL*GAWGQG
Trigger: GCCTTGGCCCCAAGCCCCTCAAAGGCAAGCTGAGCA...AAGGAACCTGACCTCTCTGACAATTGCATTTTGAACATTGTTGTCCCCAAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCAATGCAGACAGGCTTTaGAGGATCAGAACCAGAACC +
Preference number: 4 (lower is better)
Translates to: LPPGTAILSNNGSRFCPANADRL*RIRTRT
Trigger: GGTTCTGGTTCTGATCCTGCAAAGCCTGTCTGCATT...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CCA 90 bp CAGGAGCCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCAGCATTGAAGGGGAAGTaGAAAAAGGACTCATCAAAA +
Preference number: 4 (lower is better)
Translates to: QEPRLPSPFLAGPGTREPALKGK*KKDSSK
Trigger: TTTTGATGAGTCCTTTTTCCACTTCCCCTTCAATGC...TGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGGCTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CAA 72 bp ACCCTTCTGAAAACGCCAAGCAAACTGTTTTGGGTGTaGGCAAGTGACAGGGAGAGTGGCCTCCTCCAATGT +
Preference number: 4 (lower is better)
Translates to: TLLKTPSKLFWV*ASDRESGLLQC
Trigger: ACATTGGAGGAGGCCACTCTCCCTGTCACTTGCCAACACCCAAAACAGTTTGCTTGGCGTTTTCAGAAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp GTGCCCTTCCCTTTACAAAAGGGCACTTGCTTGACAGTAGAACACATCATGTGTGTACATCAGTGGCACTaGTGGTGTCTGGCCGAACAG +
Preference number: 4 (lower is better)
Translates to: VPFPLQKGTCLTVEHIMCVHQWH*WCLAEQ
Trigger: CTGTTCGGCCAGACACCAGCAGTGCCACTGATGTAC...ACACATGATGTGTTCTACTGTCAAGCAAGTGCCCTTTTGTAAAGGGAAGGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp ACTCCTCACACAGCAGTATCTGAGCCGAAATTGGGTCCTGTGAGACTACATTCAACTCCTGCTGTCGGTTaGTGTAGACATGCACGAACC +
Preference number: 4 (lower is better)
Translates to: TPHTAVSEPKLGPVRLHSTPAVG*CRHART
Trigger: GGTTCGTGCATGTCTACAGCAACCGACAGCAGGAGT...TGAATGTAGTCTCACAGGACCCAATTTCGGCTCAGATACTGCTGTGTGAGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
3UTR CAA 72 bp GCAAGCAAGCAAGCAAATCAAAGTTGCATGATGTCCTaGGTAGATACCCGTCTCCATCGGGTCTGCAGGGAT +
Preference number: 4 (lower is better)
Translates to: ASKQANQSCMMS*VDTRLHRVCRD
Trigger: ATCCCTGCAGACCCGATGGAGACGGGTATCTACCAAGGACATCATGCAACTTTGATTTGCTTGCTTGCTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp ACTCCTCACACAGCAGTATCTGAGCCGAAATTGGGTCCTGTGAGACTACATTCAAACCGTACCGTGTCTTaGGTGTTTGCCAGGGCAAAT +
Preference number: 4 (lower is better)
Translates to: TPHTAVSEPKLGPVRLHSNRTVS*VFARAN
Trigger: ATTTGCCCTGGCAAACACTCAAGACACGGTACGGTT...TGAATGTAGTCTCACAGGACCCAATTTCGGCTCAGATACTGCTGTGTGAGGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp ACTCCTCACACAGCAGTATCTGAGCCGAAATTGGGTCCTGTGAGACTACATTCATCTTTGTCTGCAGGGTaGGACTCTCGCTCCTCATTT +
Preference number: 4 (lower is better)
Translates to: TPHTAVSEPKLGPVRLHSSLSAG*DSRSSF
Trigger: AAATGAGGAGCGAGAGTCGCACCCTGCAGACAAAGA...TGAATGTAGTCTCACAGGACCCAATTTCGGCTCAGATACTGCTGTGTGAGGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CCA 90 bp CTAGAAGAGAAATCTACAATGGAGACTCTCTTAAAATCCCTGTTCCTGGGGCCCTCCTCCTTTCCAAGATaGACACCCCTGACTTCCCCT +
Preference number: 4 (lower is better)
Translates to: LEEKSTMETLLKSLFLGPSSFPR*TPLTSP
Trigger: AGGGGAAGTCAGGGGTGTCCATCTTGGAAAGGAGGA...GGGCCCCAGGAACAGGGATTTTAAGAGAGTCTCCATTGTAGATTTCTCTTCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CCA 90 bp GTGCCCTTCCCTTTACAAAAGGGCACTTGCTTGACAGTAGAACACATCATGTGTCTCTACCAAGTTTCCTaGGAGAAGACTCTCCACGAA +
Preference number: 4 (lower is better)
Translates to: VPFPLQKGTCLTVEHIMCLYQVS*EKTLHE
Trigger: TTCGTGGAGAGTCTTCTCCCAGGAAACTTGGTAGAG...ACACATGATGTGTTCTACTGTCAAGCAAGTGCCCTTTTGTAAAGGGAAGGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CCA 90 bp CCAAAATATACTTCTCACTGCTTGCTCCCAGAAGCACAACCACATAGAAAACTGACAGGGCAGAGTTCATaGAACAACCTCTGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: PKYTSHCLLPEAQPHRKLTGQSS*NNLWLV
Trigger: CACCAGCCAGAGGTTGTTCCATGAACTCTGCCCTGT...CAGTTTTCTATGTGGTTGTGCTTCTGGGAGCAAGCAGTGAGAAGTATATTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp GAGTTTTTGGTTTTCAGAAATTACATGTCAAGGGATTTGACCGGTTCCAGAAACGGCTGCTGCTCCCGGTaGATGTGTAGACTTCCAAAG +
Preference number: 4 (lower is better)
Translates to: EFLVFRNYMSRDLTGSRNGCCSR*MCRLPK
Trigger: CTTTGGAAGTCTACACATTCACCGGGAGCAGCAGCC...GTTTCTGGAACCGGTCAAATCCCTTGACATGTAATTTCTGAAAACCAAAAACTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp CCAAAATATACTTCTCACTGCTTGCTCCCAGAAGCACAACCACATAGAAAACTGAGACTCTCCACGAACTaGCGTAGGTTTTCATGGACC +
Preference number: 4 (lower is better)
Translates to: PKYTSHCLLPEAQPHRKLRLSTN*RRFSWT
Trigger: GGTCCATGAAAACCTACGGCAGTTCGTGGAGAGTCT...CAGTTTTCTATGTGGTTGTGCTTCTGGGAGCAAGCAGTGAGAAGTATATTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp ACTCCTCACACAGCAGTATCTGAGCCGAAATTGGGTCCTGTGAGACTACATTCATCTCGTTCCATAAAGTaGTTGTCATACTGGTTTGGG +
Preference number: 4 (lower is better)
Translates to: TPHTAVSEPKLGPVRLHSSRSIK*LSYWFG
Trigger: CCCAAACCAGTATGACAAGCACTTTATGGAACGAGA...TGAATGTAGTCTCACAGGACCCAATTTCGGCTCAGATACTGCTGTGTGAGGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR TCA 90 bp CTAGAAGAGAAATCTACAATGGAGACTCTCTTAAAATCCCTGTTCCTGGGGCCCTTCATTCACGTAGTGTaGGAAGTGCAGCAAGTACTT +
Preference number: 4 (lower is better)
Translates to: LEEKSTMETLLKSLFLGPFIHVV*EVQQVL
Trigger: AAGTACTTGCTGCACTTCTCACACTACGTGAATGAA...GGGCCCCAGGAACAGGGATTTTAAGAGAGTCTCCATTGTAGATTTCTCTTCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR GCA 90 bp CCAAAATATACTTCTCACTGCTTGCTCCCAGAAGCACAACCACATAGAAAACTGGCGGGCTTGTTTATGTaGTCTTTGAAGATGAGCATG +
Preference number: 4 (lower is better)
Translates to: PKYTSHCLLPEAQPHRKLAGLFM*SLKMSM
Trigger: CATGCTCATCTTCAAAGAGCACATAAACAAGCCCGC...CAGTTTTCTATGTGGTTGTGCTTCTGGGAGCAAGCAGTGAGAAGTATATTTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 90 bp CCAGCAGGCGCTCCATCCACAAGGACAACTTGCTCAGCTTGCCTTTaGGGGGCTTGGGGCCAAGGCCACAGGAAGGCTTCCCTCGGGAGG +
Preference number: 5 (lower is better)
Translates to: PAGAPSTRTTCSACL*GAWGQGHRKASLGR
Trigger: CCTCCCGAGGGAAGCCTTCCTGTGGCCTTGGCCCCAAGCCCCTCAAAGGCAAGCTGAGCAAGTTGTCCTTGTGGATGGAGCGCCTGCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CCCAGCAGCAGGGAGAGGGCACCCCACAGACTGACTGGACTTTCCCCCAGCTACTCCCGCCGCTCCGCATaGAAGGGGAAGTGGAAAAAG +
Preference number: 5 (lower is better)
Translates to: PSSRERAPHRLTGLSPSYSRRSA*KGKWKK
Trigger: CTTTTTCCACTTCCCCTTCAATGCGGAGCGGCGGGA...GTAGCTGGGGGAAAGTCCAGTCAGTCTGTGGGGTGCCCTCTCCCTGCTGCTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 90 bp AACAACCTCTGGCTGGTGAGCCGGGAGGCCAGCAGGTACTTGTTTTaGGCGATGAAGTCCTCGATGACCTGCTTCTTCAGTCCCCGAGCC +
Preference number: 5 (lower is better)
Translates to: NNLWLVSREASRYLF*AMKSSMTCFFSPRA
Trigger: GGCTCGGGGACTGAAGAAGCAGGTCATCGAGGACTTCATCGCCCAAAACAAGTACCTGCTGGCCTCCCGGCTCACCAGCCAGAGGTTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CCCAGCAGCAGGGAGAGGGCACCCCACAGACTGACTGGACTTTCCCCCAGCTACTCGGCTCCAGGGTCTTaGTTTTTGTCAGGATGCCAT +
Preference number: 5 (lower is better)
Translates to: PSSRERAPHRLTGLSPSYSAPGS*FLSGCH
Trigger: ATGGCATCCTGACAAAAACAAAGACCCTGGAGCCGA...GTAGCTGGGGGAAAGTCCAGTCAGTCTGTGGGGTGCCCTCTCCCTGCTGCTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CAGGAGCCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCACTGCTTCTGGTAGCCTaGGTTCTCACCGGCATCACC +
Preference number: 5 (lower is better)
Translates to: QEPRLPSPFLAGPGTREPLLLVA*VLTGIT
Trigger: GGTGATGCCGGTGAGAACCAAGGCTACCAGAAGCAG...TGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGGCTCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCATGGAGATTGCCTTTGAGGGGCTaGGGGCCAAGGCCACAGGAA +
Preference number: 5 (lower is better)
Translates to: PRLPSPFLAGPGTREPWRLPLRG*GPRPQE
Trigger: TTCCTGTGGCCTTGGCCCCAAGCCCCTCAAAGGCAA...TCTCCATGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCATGGAGATTGCTCAGCTTGCCTTaGAGGGGCTTGGGGCCAAGG +
Preference number: 5 (lower is better)
Translates to: PRLPSPFLAGPGTREPWRLLSLP*RGLGPR
Trigger: CCTTGGCCCCAAGCCCCTCAAAGGCAAGCTGAGCAA...TCTCCATGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CAGGAGCCAAGACTGCCTTCACCCTTTCTAGCTGGGCCAGGCACACGAGAACCAGACAACTTGCTCAGCTaGCCTTTGAGGGGCTTGGGG +
Preference number: 5 (lower is better)
Translates to: QEPRLPSPFLAGPGTREPDNLLS*PLRGLG
Trigger: CCCCAAGCCCCTCAAAGGCAAGCTGAGCAAGTTGTC...TGGTTCTCGTGTGCCTGGCCCAGCTAGAAAGGGTGAAGGCAGTCTTGGCTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 90 bp TATGCGAAGGCCGTCAACTTGTACATCAGTGGCACTGCTGGTGTCTaGCCGAACAGGAGGGCGTGTGGCTTATTCTCCTGCTGCCAGCCA +
Preference number: 5 (lower is better)
Translates to: YAKAVNLYISGTAGV*PNRRACGLFSCCQP
Trigger: TGGCTGGCAGCAGGAGAATAAGCCACACGCCCTCCTGTTCGGCCAGACACCAGCAGTGCCACTGATGTACAAGTTGACGGCCTTCGCATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 90 bp GTACATCAGTGGCACTGCTGGTGTCTGGCCGAACAGGAGGGCGTGTaGCTTATTCTCCTGCTGCCAGCCAGAGAGGAACCGCACATAATT +
Preference number: 5 (lower is better)
Translates to: VHQWHCWCLAEQEGV*LILLLPAREEPHII
Trigger: AATTATGTGCGGTTCCTCTCTGGCTGGCAGCAGGAGAATAAGCCACACGCCCTCCTGTTCGGCCAGACACCAGCAGTGCCACTGATGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 90 bp CCCGCTGTGTTCCTCCTTTCCAAGATGGACACCCCTGACTTCCCCTaGAAAGCTTCCATGTCCGGTAGCAATGTGCTGGCAAACTCCTGC +
Preference number: 5 (lower is better)
Translates to: PAVFLLSKMDTPDFP*KASMSGSNVLANSC
Trigger: GCAGGAGTTTGCCAGCACATTGCTACCGGACATGGAAGCTTTCCAGGGGAAGTCAGGGGTGTCCATCTTGGAAAGGAGGAACACAGCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 90 bp ACACCCCTGACTTCCCCTGGAAAGCTTCCATGTCCGGTAGCAATGTaGTGGCAAACTCCTGCTGTCGGTTGCTGTAGACATGCACGAACC +
Preference number: 5 (lower is better)
Translates to: TPLTSPGKLPCPVAM*WQTPAVGCCRHART
Trigger: GGTTCGTGCATGTCTACAGCAACCGACAGCAGGAGTTTGCCAGCACATTGCTACCGGACATGGAAGCTTTCCAGGGGAAGTCAGGGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 90 bp ATCCTTGTATGCGAAGGCCGTCAACTTGTACATCAGTGGCACTGCTaGTGTCTGGCCGAACAGGAGGGCGTGTGGCTTATTCTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: ILVCEGRQLVHQWHC*CLAEQEGVWLILLL
Trigger: CAGCAGGAGAATAAGCCACACGCCCTCCTGTTCGGCCAGACACCAGCAGTGCCACTGATGTACAAGTTGACGGCCTTCGCATACAAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 90 bp CCCCTGACTTCCCCTGGAAAGCTTCCATGTCCGGTAGCAATGTGCTaGCAAACTCCTGCTGTCGGTTGCTGTAGACATGCACGAACCGTA +
Preference number: 5 (lower is better)
Translates to: PLTSPGKLPCPVAMC*QTPAVGCCRHARTV
Trigger: TACGGTTCGTGCATGTCTACAGCAACCGACAGCAGGAGTTTGCCAGCACATTGCTACCGGACATGGAAGCTTTCCAGGGGAAGTCAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 90 bp GTAGGGTCTTTTGAAGCTCTCGGGAAGCACTTCATTCACGTAGTGTaGGAAGTGCAGCAAGTACTTCTCGTCACCCGAGTCCCGCCGCTC +
Preference number: 5 (lower is better)
Translates to: VGSFEALGKHFIHVV*EVQQVLLVTRVPPL
Trigger: GAGCGGCGGGACTCGGGTGACGAGAAGTACTTGCTGCACTTCTCACACTACGTGAATGAAGTGCTTCCCGAGAGCTTCAAAAGACCCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 90 bp ATAATCCTTGTATGCGAAGGCCGTCAACTTGTACATCAGTGGCACTaGTGGTGTCTGGCCGAACAGGAGGGCGTGTGGCTTATTCTCCTG +
Preference number: 5 (lower is better)
Translates to: IILVCEGRQLVHQWH*WCLAEQEGVWLILL
Trigger: CAGGAGAATAAGCCACACGCCCTCCTGTTCGGCCAGACACCAGCAGTGCCACTGATGTACAAGTTGACGGCCTTCGCATACAAGGATTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 90 bp CTTCCATGTCCGGTAGCAATGTGCTGGCAAACTCCTGCTGTCGGTTaGTGTAGACATGCACGAACCGTACCGTGTCTTGAGTGTTTGCCA +
Preference number: 5 (lower is better)
Translates to: LPCPVAMCWQTPAVG*CRHARTVPCLECLP
Trigger: TGGCAAACACTCAAGACACGGTACGGTTCGTGCATGTCTACAGCAACCGACAGCAGGAGTTTGCCAGCACATTGCTACCGGACATGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 90 bp CGACACATAATCCTTGTATGCGAAGGCCGTCAACTTGTACATCAGTaGCACTGCTGGTGTCTGGCCGAACAGGAGGGCGTGTGGCTTATT +
Preference number: 5 (lower is better)
Translates to: RHIILVCEGRQLVHQ*HCWCLAEQEGVWLI
Trigger: AATAAGCCACACGCCCTCCTGTTCGGCCAGACACCAGCAGTGCCACTGATGTACAAGTTGACGGCCTTCGCATACAAGGATTATGTGTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 90 bp CTCCTTCCAGACAGGCTCGATATGGATGCAGCTGAAGCACCAGTCTaGCGTGATCTTGATGAGGTAGGGTCTTTTGAAGCTCTCGGGAAG +
Preference number: 5 (lower is better)
Translates to: LLPDRLDMDAAEAPV*RDLDEVGSFEALGK
Trigger: CTTCCCGAGAGCTTCAAAAGACCCTACCTCATCAAGATCACGTCAGACTGGTGCTTCAGCTGCATCCATATCGAGCCTGTCTGGAAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 90 bp AAATACAGGAGCCAGCTCGTCAGTCAGGTCAGGGAGCACAGCTTCTaGAGACAGAAATGCTGGATCCTTCCGCAGCTGGTCAAGATAACC +
Preference number: 5 (lower is better)
Translates to: KYRSQLVSQVREHSF*RQKCWILPQLVKIT
Trigger: GGTTATCTTGACCAGCTGCGGAAGGATCCAGCATTTCTGTCTTCAGAAGCTGTGCTCCCTGACCTGACTGACGAGCTGGCTCCTGTATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 90 bp TCCATAAAGTGCTTGTCATACTGGTTTGGGATCGGGGCCGCATCCTaGGCAAACTCTAGCAAATACTCCAGCCACTCCCGGTGTTTGTCC +
Preference number: 5 (lower is better)
Translates to: SIKCLSYWFGIGAAS*ANSSKYSSHSRCLS
Trigger: GGACAAACACCGGGAGTGGCTGGAGTATTTGCTAGAGTTTGCTCAGGATGCGGCCCCGATCCCAAACCAGTATGACAAGCACTTTATGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 90 bp GGTCACAGGAGGCCACAGTCTCCTCATCCACTGTCTTTAGTGGCTTaGAAAGGCAGAAATACTTCTTGTGACCGTTCAGGGCCAGCACGT +
Preference number: 5 (lower is better)
Translates to: GHRRPQSPHPLSLVA*KGRNTSCDRSGPAR
Trigger: ACGTGCTGGCCCTGAACGGTCACAAGAAGTATTTCTGCCTTTTCAAGCCACTAAAGACAGTGGATGAGGAGACTGTGGCCTCCTGTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 90 bp ACCCCTAGGACTCTGTATGGGTCAAAATCCAATGCAGACAGGCTTTaGAGGATCAGAACCAGAACCATCAAGAATCGCCAGGACACGCCC +
Preference number: 5 (lower is better)
Translates to: TPRTLYGSKSNADRL*RIRTRTIKNRQDTP
Trigger: GGGCGTGTCCTGGCGATTCTTGATGGTTCTGGTTCTGATCCTGCAAAGCCTGTCTGCATTGGATTTTGACCCATACAGAGTCCTAGGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038014.11
ENSMUST00000153880.2
CDS-3UTR CAA 90 bp CTGCCTCCAGGTACAGCTATCCTTTCTAACAATGGCAGCAGATTCTGTCCCGCCCCAGGGTCTTTGTTTTaGTCAGGATGCCATTCCCGA +
Preference number: 5 (lower is better)
Translates to: LPPGTAILSNNGSRFCPAPGSLF*SGCHSR
Trigger: TCGGGAATGGCATCCTGACAAAAACAAAGACCCTGG...GGCGGGACAGAATCTGCTGCCATTGTTAGAAAGGATAGCTGTACCTGGAGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CCCCCAGCTACTGAACATGACTCACAGGCTGCCTTGAGCAGATACCCACTCCTCATCACATCAGCGGGCTaGTTTATGTGCTCTTTGAAG +
Preference number: 5 (lower is better)
Translates to: PPATEHDSQAALSRYPLLITSAG*FMCSLK
Trigger: CTTCAAAGAGCACATAAACAAGCCCGCTGATGTGAT...GAGGAGTGGGTATCTGCTCAAGGCAGCCTGTGAGTCATGTTCAGTAGCTGGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 90 bp GTGACCTTCTCTACCAAGTTTCCTGGGAGAAGACTCTCCACGAACTaGCGTAGGTTTTCATGGACCACTGCGTTGTGGAAGAAGGTGATC +
Preference number: 5 (lower is better)
Translates to: VTFSTKFPGRRLSTN*RRFSWTTALWKKVI
Trigger: GATCACCTTCTTCCACAACGCAGTGGTCCATGAAAACCTACGGCAGTTCGTGGAGAGTCTTCTCCCAGGAAACTTGGTAGAGAAGGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 90 bp TTAGTCTCAGCTGTCAGTAAAACCACGCAGTATTTTCTCTGTCGGTaGGACCGCTTCACAGGGCAGAGTTCATGGAACAACCTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: LVSAVSKTTQYFLCR*DRFTGQSSWNNLWL
Trigger: CAGCCAGAGGTTGTTCCATGAACTCTGCCCTGTGAAGCGGTCTCACCGACAGAGAAAATACTGCGTGGTTTTACTGACAGCTGAGACTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 90 bp GACATGCACGAACCGTACCGTGTCTTGAGTGTTTGCCAGGGCAAATaGCAGGAAGGCTTCAAAGGGTTTGCTCACTTTGTTAGTCTCAGC +
Preference number: 5 (lower is better)
Translates to: DMHEPYRVLSVCQGK*QEGFKGFAHFVSLS
Trigger: GCTGAGACTAACAAAGTGAGCAAACCCTTTGAAGCCTTCCTGTCATTTGCCCTGGCAAACACTCAAGACACGGTACGGTTCGTGCATGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 90 bp AGGCTTGTCTTAGTGGAATTGGACAGGATCAGGACCACATTCATGTaGCCAGGCCTCAGGCGTACCAAATTGCTGGTGTACGTCACATCT +
Preference number: 5 (lower is better)
Translates to: RLVLVELDRIRTTFM*PGLRRTKLLVYVTS
Trigger: AGATGTGACGTACACCAGCAATTTGGTACGCCTGAGGCCTGGTCACATGAATGTGGTCCTGATCCTGTCCAATTCCACTAAGACAAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 90 bp GTGGTCGTAGTTTGTCCTCTTTTCCTCATTGGACAGGATCTCGTATaGCTTGCTGATCTGAATGAACCTGTCCTCGGCTCCAGGGTCTTT +
Preference number: 5 (lower is better)
Translates to: VVVVCPLFLIGQDLV*LADLNEPVLGSRVF
Trigger: AAAGACCCTGGAGCCGAGGACAGGTTCATTCAGATCAGCAAGGCATACGAGATCCTGTCCAATGAGGAAAAGAGGACAAACTACGACCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038014.11
ENSMUST00000153880.2
CDS-3UTR CAA 90 bp GAGACTAAATGTGAATGCTGCACCTTCACCCCCTGCTCACCCCTTTCTTCTCAACAATGCAGACAGGCTTaGCAGGATCAGAACCAGAAC +
Preference number: 5 (lower is better)
Translates to: ETKCECCTFTPCSPLSSQQCRQA*QDQNQN
Trigger: GTTCTGGTTCTGATCCTGCAAAGCCTGTCTGCATTG...TTGAGAAGAAAGGGGTGAGCAGGGGGTGAAGGTGCAGCATTCACATTTAGTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CCAAAATATACTTCTCACTGCTTGCTCCCAGAAGCACAACCACATAGAAAACTGGGATCCTCCAGGGTTTaGAACACCACCCTCCCCGCT +
Preference number: 5 (lower is better)
Translates to: PKYTSHCLLPEAQPHRKLGSSRV*NTTLPA
Trigger: AGCGGGGAGGGTGGTGTTCAAAACCCTGGAGGATCC...CAGTTTTCTATGTGGTTGTGCTTCTGGGAGCAAGCAGTGAGAAGTATATTTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 90 bp GTCCTCTTTTCCTCATTGGACAGGATCTCGTATGCCTTGCTGATCTaGATGAACCTGTCCTCGGCTCCAGGGTCTTTGTTTTTGTCAGGA +
Preference number: 5 (lower is better)
Translates to: VLFSSLDRISYALLI*MNLSSAPGSLFLSG
Trigger: TCCTGACAAAAACAAAGACCCTGGAGCCGAGGACAGGTTCATTCAGATCAGCAAGGCATACGAGATCCTGTCCAATGAGGAAAAGAGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038014.11
ENSMUST00000153880.2
CDS-3UTR CAA 90 bp CTCTTTGGGGACAACAATGTTCAAAATGCAATTGTCAGAGAGGTCAGGTTCCTTGCGAAGGCCGTCAACTaGTACATCAGTGGCACTGCT +
Preference number: 5 (lower is better)
Translates to: LFGDNNVQNAIVREVRFLAKAVN*YISGTA
Trigger: AGCAGTGCCACTGATGTACAAGTTGACGGCCTTCGC...AAGGAACCTGACCTCTCTGACAATTGCATTTTGAACATTGTTGTCCCCAAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CCAAAATATACTTCTCACTGCTTGCTCCCAGAAGCACAACCACATAGAAAACTGGAGGCCAGCAGGTACTaGTTTTGGGCGATGAAGTCC +
Preference number: 5 (lower is better)
Translates to: PKYTSHCLLPEAQPHRKLEASRY*FWAMKS
Trigger: GGACTTCATCGCCCAAAACAAGTACCTGCTGGCCTC...CAGTTTTCTATGTGGTTGTGCTTCTGGGAGCAAGCAGTGAGAAGTATATTTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp ACTCCTCACACAGCAGTATCTGAGCCGAAATTGGGTCCTGTGAGACTACATTCACTTGTCTTAGTGGAATaGGACAGGATCAGGACCACA +
Preference number: 5 (lower is better)
Translates to: TPHTAVSEPKLGPVRLHSLVLVE*DRIRTT
Trigger: TGTGGTCCTGATCCTGTCCAATTCCACTAAGACAAG...TGAATGTAGTCTCACAGGACCCAATTTCGGCTCAGATACTGCTGTGTGAGGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CTCTTTGGGGACAACAATGTTCAAAATGCAATTGTCAGAGAGGTCAGGTTCCTTGAACCGTACCGTGTCTaGAGTGTTTGCCAGGGCAAA +
Preference number: 5 (lower is better)
Translates to: LFGDNNVQNAIVREVRFLEPYRV*SVCQGK
Trigger: TTTGCCCTGGCAAACACTCAAGACACGGTACGGTTC...AAGGAACCTGACCTCTCTGACAATTGCATTTTGAACATTGTTGTCCCCAAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CCAAAATATACTTCTCACTGCTTGCTCCCAGAAGCACAACCACATAGAAAACTGTCATGGACCACTGCGTaGTGGAAGAAGGTGATCTTC +
Preference number: 5 (lower is better)
Translates to: PKYTSHCLLPEAQPHRKLSWTTA*WKKVIF
Trigger: GAAGATCACCTTCTTCCACAACGCAGTGGTCCATGA...CAGTTTTCTATGTGGTTGTGCTTCTGGGAGCAAGCAGTGAGAAGTATATTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp GAGTTTTTGGTTTTCAGAAATTACATGTCAAGGGATTTGACCGGTTCCAGAAACCCGTGTCTTGAGTGTTaGCCAGGGCAAATGACAGGA +
Preference number: 5 (lower is better)
Translates to: EFLVFRNYMSRDLTGSRNPCLEC*PGQMTG
Trigger: TCCTGTCATTTGCCCTGGCAAACACTCAAGACACGG...GTTTCTGGAACCGGTCAAATCCCTTGACATGTAATTTCTGAAAACCAAAAACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS-3UTR CAA 90 bp CCAAAATATACTTCTCACTGCTTGCTCCCAGAAGCACAACCACATAGAAAACTGCGTTCCATAAAGTGCTaGTCATACTGGTTTGGGATC +
Preference number: 5 (lower is better)
Translates to: PKYTSHCLLPEAQPHRKLRSIKC*SYWFGI
Trigger: GATCCCAAACCAGTATGACAAGCACTTTATGGAACG...CAGTTTTCTATGTGGTTGTGCTTCTGGGAGCAAGCAGTGAGAAGTATATTTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 90 bp TCCAGCAGGCGCTCCATCCACAAGGACAACTTGCTCAGCTTGCCTTaGAGGGGCTTGGGGCCAAGGCCACAGGAAGGCTTCCCTCGGGAG +
Preference number: 6 (lower is better)
Translates to: SSRRSIHKDNLLSLP*RGLGPRPQEGFPRE
Trigger: CTCCCGAGGGAAGCCTTCCTGTGGCCTTGGCCCCAAGCCCCTCAAAGGCAAGCTGAGCAAGTTGTCCTTGTGGATGGAGCGCCTGCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 72 bp TGGCACTGCTGGTGTCTGGCCGAACAGGAGGGCGTGTaGCTTATTCTCCTGCTGCCAGCCAGAGAGGAACCG +
Preference number: 6 (lower is better)
Translates to: WHCWCLAEQEGV*LILLLPAREEP
Trigger: CGGTTCCTCTCTGGCTGGCAGCAGGAGAATAAGCCACACGCCCTCCTGTTCGGCCAGACACCAGCAGTGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 72 bp GAGCCTTCCAGCAGGCGCTCCATCCACAAGGACAACTaGCTCAGCTTGCCTTTGAGGGGCTTGGGGCCAAGG +
Preference number: 6 (lower is better)
Translates to: EPSSRRSIHKDN*LSLPLRGLGPR
Trigger: CCTTGGCCCCAAGCCCCTCAAAGGCAAGCTGAGCAAGTTGTCCTTGTGGATGGAGCGCCTGCTGGAAGGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 90 bp CTCTGCAAGGAGCCTTCCAGCAGGCGCTCCATCCACAAGGACAACTaGCTCAGCTTGCCTTTGAGGGGCTTGGGGCCAAGGCCACAGGAA +
Preference number: 6 (lower is better)
Translates to: LCKEPSSRRSIHKDN*LSLPLRGLGPRPQE
Trigger: TTCCTGTGGCCTTGGCCCCAAGCCCCTCAAAGGCAAGCTGAGCAAGTTGTCCTTGTGGATGGAGCGCCTGCTGGAAGGCTCCTTGCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 72 bp GCTCCATCCACAAGGACAACTTGCTCAGCTTGCCTTTaGGGGGCTTGGGGCCAAGGCCACAGGAAGGCTTCC +
Preference number: 6 (lower is better)
Translates to: APSTRTTCSACL*GAWGQGHRKAS
Trigger: GGAAGCCTTCCTGTGGCCTTGGCCCCAAGCCCCTCAAAGGCAAGCTGAGCAAGTTGTCCTTGTGGATGGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 72 bp CGCTCCATCCACAAGGACAACTTGCTCAGCTTGCCTTaGAGGGGCTTGGGGCCAAGGCCACAGGAAGGCTTC +
Preference number: 6 (lower is better)
Translates to: RSIHKDNLLSLP*RGLGPRPQEGF
Trigger: GAAGCCTTCCTGTGGCCTTGGCCCCAAGCCCCTCAAAGGCAAGCTGAGCAAGTTGTCCTTGTGGATGGAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 72 bp TCACAGGGCAGAGTTCATGGAACAACCTCTGGCTGGTaGGCCGGGAGGCCAGCAGGTACTTGTTTTGGGCGA +
Preference number: 6 (lower is better)
Translates to: SQGRVHGTTSGW*AGRPAGTCFGR
Trigger: TCGCCCAAAACAAGTACCTGCTGGCCTCCCGGCTCACCAGCCAGAGGTTGTTCCATGAACTCTGCCCTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 72 bp GTATGCGAAGGCCGTCAACTTGTACATCAGTGGCACTaGTGGTGTCTGGCCGAACAGGAGGGCGTGTGGCTT +
Preference number: 6 (lower is better)
Translates to: VCEGRQLVHQWH*WCLAEQEGVWL
Trigger: AAGCCACACGCCCTCCTGTTCGGCCAGACACCAGCAGTGCCACTGATGTACAAGTTGACGGCCTTCGCATAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 72 bp GACCGCTTCACAGGGCAGAGTTCATGGAACAACCTCTaGCTGGTGAGCCGGGAGGCCAGCAGGTACTTGTTT +
Preference number: 6 (lower is better)
Translates to: DRFTGQSSWNNL*LVSREASRYLF
Trigger: AAACAAGTACCTGCTGGCCTCCCGGCTCACCAGCCAGAGGTTGTTCCATGAACTCTGCCCTGTGAAGCGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 72 bp GCGGAAGCGGTGTTCGCGCTGCTGCTTCTGGTAGCCTaGGTTCTCACCGGCATCACCATAGTGGTCGTAGTT +
Preference number: 6 (lower is better)
Translates to: AEAVFALLLLVA*VLTGITIVVVV
Trigger: AACTACGACCACTATGGTGATGCCGGTGAGAACCAAGGCTACCAGAAGCAGCAGCGCGAACACCGCTTCCGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 72 bp AACCTCTGGCTGGTGAGCCGGGAGGCCAGCAGGTACTaGTTTTGGGCGATGAAGTCCTCGATGACCTGCTTC +
Preference number: 6 (lower is better)
Translates to: NLWLVSREASRY*FWAMKSSMTCF
Trigger: GAAGCAGGTCATCGAGGACTTCATCGCCCAAAACAAGTACCTGCTGGCCTCCCGGCTCACCAGCCAGAGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 90 bp TCATGGAACAACCTCTGGCTGGTGAGCCGGGAGGCCAGCAGGTACTaGTTTTGGGCGATGAAGTCCTCGATGACCTGCTTCTTCAGTCCC +
Preference number: 6 (lower is better)
Translates to: SWNNLWLVSREASRY*FWAMKSSMTCFFSP
Trigger: GGGACTGAAGAAGCAGGTCATCGAGGACTTCATCGCCCAAAACAAGTACCTGCTGGCCTCCCGGCTCACCAGCCAGAGGTTGTTCCATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 72 bp AGCCAGCTCGTCAGTCAGGTCAGGGAGCACAGCTTCTaGAGACAGAAATGCTGGATCCTTCCGCAGCTGGTC +
Preference number: 6 (lower is better)
Translates to: SQLVSQVREHSF*RQKCWILPQLV
Trigger: GACCAGCTGCGGAAGGATCCAGCATTTCTGTCTTCAGAAGCTGTGCTCCCTGACCTGACTGACGAGCTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 72 bp TGCGAAGGCCGTCAACTTGTACATCAGTGGCACTGCTaGTGTCTGGCCGAACAGGAGGGCGTGTGGCTTATT +
Preference number: 6 (lower is better)
Translates to: CEGRQLVHQWHC*CLAEQEGVWLI
Trigger: AATAAGCCACACGCCCTCCTGTTCGGCCAGACACCAGCAGTGCCACTGATGTACAAGTTGACGGCCTTCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 72 bp ATCCTTGTATGCGAAGGCCGTCAACTTGTACATCAGTaGCACTGCTGGTGTCTGGCCGAACAGGAGGGCGTG +
Preference number: 6 (lower is better)
Translates to: ILVCEGRQLVHQ*HCWCLAEQEGV
Trigger: CACGCCCTCCTGTTCGGCCAGACACCAGCAGTGCCACTGATGTACAAGTTGACGGCCTTCGCATACAAGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 72 bp TGCGACTCTCGCTCCTCATTTGAGTCACTGAAAGCCTaGACCATGACCGTGCCGAAGAGGATGAAGAGGGCC +
Preference number: 6 (lower is better)
Translates to: CDSRSSFESLKA*TMTVPKRMKRA
Trigger: GGCCCTCTTCATCCTCTTCGGCACGGTCATGGTCCAGGCTTTCAGTGACTCAAATGAGGAGCGAGAGTCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 90 bp GTGGAAATGGCGGAAGCGGTGTTCGCGCTGCTGCTTCTGGTAGCCTaGGTTCTCACCGGCATCACCATAGTGGTCGTAGTTTGTCCTCTT +
Preference number: 6 (lower is better)
Translates to: VEMAEAVFALLLLVA*VLTGITIVVVVCPL
Trigger: AAGAGGACAAACTACGACCACTATGGTGATGCCGGTGAGAACCAAGGCTACCAGAAGCAGCAGCGCGAACACCGCTTCCGCCATTTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 90 bp GTGAAGCTCGGCTCAGTCTTCCCAGCCTTCTCGGGGACTTCCTCTTaGTCTGCAGGGTGCGACTCTCGCTCCTCATTTGAGTCACTGAAA +
Preference number: 6 (lower is better)
Translates to: VKLGSVFPAFSGTSS*SAGCDSRSSFESLK
Trigger: TTTCAGTGACTCAAATGAGGAGCGAGAGTCGCACCCTGCAGACAAAGAGGAAGTCCCCGAGAAGGCTGGGAAGACTGAGCCGAGCTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 72 bp TGCTTGTCATACTGGTTTGGGATCGGGGCCGCATCCTaGGCAAACTCTAGCAAATACTCCAGCCACTCCCGG +
Preference number: 6 (lower is better)
Translates to: CLSYWFGIGAAS*ANSSKYSSHSR
Trigger: CCGGGAGTGGCTGGAGTATTTGCTAGAGTTTGCTCAGGATGCGGCCCCGATCCCAAACCAGTATGACAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 72 bp CCGGTAGCAATGTGCTGGCAAACTCCTGCTGTCGGTTaGTGTAGACATGCACGAACCGTACCGTGTCTTGAG +
Preference number: 6 (lower is better)
Translates to: PVAMCWQTPAVG*CRHARTVPCLE
Trigger: CTCAAGACACGGTACGGTTCGTGCATGTCTACAGCAACCGACAGCAGGAGTTTGCCAGCACATTGCTACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 90 bp GTCACCTCCACAAAGCCTTTCTTAGGAATCTTGCTGCTGCTCTCTTaGGTGAAGCTCGGCTCAGTCTTCCCAGCCTTCTCGGGGACTTCC +
Preference number: 6 (lower is better)
Translates to: VTSTKPFLGILLLLS*VKLGSVFPAFSGTS
Trigger: GGAAGTCCCCGAGAAGGCTGGGAAGACTGAGCCGAGCTTCACCAAAGAGAGCAGCAGCAAGATTCCTAAGAAAGGCTTTGTGGAGGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 72 bp TCCCCTGGAAAGCTTCCATGTCCGGTAGCAATGTGCTaGCAAACTCCTGCTGTCGGTTGCTGTAGACATGCA +
Preference number: 6 (lower is better)
Translates to: SPGKLPCPVAMC*QTPAVGCCRHA
Trigger: TGCATGTCTACAGCAACCGACAGCAGGAGTTTGCCAGCACATTGCTACCGGACATGGAAGCTTTCCAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 72 bp ACTTCCCCTGGAAAGCTTCCATGTCCGGTAGCAATGTaGTGGCAAACTCCTGCTGTCGGTTGCTGTAGACAT +
Preference number: 6 (lower is better)
Translates to: TSPGKLPCPVAM*WQTPAVGCCRH
Trigger: ATGTCTACAGCAACCGACAGCAGGAGTTTGCCAGCACATTGCTACCGGACATGGAAGCTTTCCAGGGGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CCA 72 bp GGGAGAAGACTCTCCACGAACTGCCGTAGGTTTTCATaGACCACTGCGTTGTGGAAGAAGGTGATCTTCCCA +
Preference number: 6 (lower is better)
Translates to: GRRLSTNCRRFS*TTALWKKVIFP
Trigger: TGGGAAGATCACCTTCTTCCACAACGCAGTGGTCCATGAAAACCTACGGCAGTTCGTGGAGAGTCTTCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 72 bp TCCACGAACTGCCGTAGGTTTTCATGGACCACTGCGTaGTGGAAGAAGGTGATCTTCCCACTGATGACCCCA +
Preference number: 6 (lower is better)
Translates to: STNCRRFSWTTA*WKKVIFPLMTP
Trigger: TGGGGTCATCAGTGGGAAGATCACCTTCTTCCACAACGCAGTGGTCCATGAAAACCTACGGCAGTTCGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 90 bp AGAAGACTCTCCACGAACTGCCGTAGGTTTTCATGGACCACTGCGTaGTGGAAGAAGGTGATCTTCCCACTGATGACCCCAAGGATGGAG +
Preference number: 6 (lower is better)
Translates to: RRLSTNCRRFSWTTA*WKKVIFPLMTPRME
Trigger: CTCCATCCTTGGGGTCATCAGTGGGAAGATCACCTTCTTCCACAACGCAGTGGTCCATGAAAACCTACGGCAGTTCGTGGAGAGTCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 90 bp GTCGGTTGCTGTAGACATGCACGAACCGTACCGTGTCTTGAGTGTTaGCCAGGGCAAATGACAGGAAGGCTTCAAAGGGTTTGCTCACTT +
Preference number: 6 (lower is better)
Translates to: VGCCRHARTVPCLEC*PGQMTGRLQRVCSL
Trigger: AAGTGAGCAAACCCTTTGAAGCCTTCCTGTCATTTGCCCTGGCAAACACTCAAGACACGGTACGGTTCGTGCATGTCTACAGCAACCGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 72 bp TCTACCAAGTTTCCTGGGAGAAGACTCTCCACGAACTaGCGTAGGTTTTCATGGACCACTGCGTTGTGGAAG +
Preference number: 6 (lower is better)
Translates to: STKFPGRRLSTN*RRFSWTTALWK
Trigger: CTTCCACAACGCAGTGGTCCATGAAAACCTACGGCAGTTCGTGGAGAGTCTTCTCCCAGGAAACTTGGTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 72 bp TCCTCATTGGACAGGATCTCGTATGCCTTGCTGATCTaGATGAACCTGTCCTCGGCTCCAGGGTCTTTGTTT +
Preference number: 6 (lower is better)
Translates to: SSLDRISYALLI*MNLSSAPGSLF
Trigger: AAACAAAGACCCTGGAGCCGAGGACAGGTTCATTCAGATCAGCAAGGCATACGAGATCCTGTCCAATGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038014.11
ENSMUST00000153880.2
CDS TCA 72 bp TTTGAAGCTCTCGGGAAGCACTTCATTCACGTAGTGTaGGAAGTGCAGCAAGTACTTCTCGTCACCCGAGTC +
Preference number: 6 (lower is better)
Translates to: FEALGKHFIHVV*EVQQVLLVTRV
Trigger: GACTCGGGTGACGAGAAGTACTTGCTGCACTTCTCACACTACGTGAATGAAGTGCTTCCCGAGAGCTTCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 72 bp GACAGGCTCGATATGGATGCAGCTGAAGCACCAGTCTaGCGTGATCTTGATGAGGTAGGGTCTTTTGAAGCT +
Preference number: 6 (lower is better)
Translates to: DRLDMDAAEAPV*RDLDEVGSFEA
Trigger: AGCTTCAAAAGACCCTACCTCATCAAGATCACGTCAGACTGGTGCTTCAGCTGCATCCATATCGAGCCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 72 bp GCTGTCAGTAAAACCACGCAGTATTTTCTCTGTCGGTaGGACCGCTTCACAGGGCAGAGTTCATGGAACAAC +
Preference number: 6 (lower is better)
Translates to: AVSKTTQYFLCR*DRFTGQSSWNN
Trigger: GTTGTTCCATGAACTCTGCCCTGTGAAGCGGTCTCACCGACAGAGAAAATACTGCGTGGTTTTACTGACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 72 bp TTAGTGGAATTGGACAGGATCAGGACCACATTCATGTaGCCAGGCCTCAGGCGTACCAAATTGCTGGTGTAC +
Preference number: 6 (lower is better)
Translates to: LVELDRIRTTFM*PGLRRTKLLVY
Trigger: GTACACCAGCAATTTGGTACGCCTGAGGCCTGGTCACATGAATGTGGTCCTGATCCTGTCCAATTCCACTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 72 bp GTTTGTCCTCTTTTCCTCATTGGACAGGATCTCGTATaGCTTGCTGATCTGAATGAACCTGTCCTCGGCTCC +
Preference number: 6 (lower is better)
Translates to: VCPLFLIGQDLV*LADLNEPVLGS
Trigger: GGAGCCGAGGACAGGTTCATTCAGATCAGCAAGGCATACGAGATCCTGTCCAATGAGGAAAAGAGGACAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038014.11
ENSMUST00000153880.2
CDS CAA 72 bp TGTAGACATGCACGAACCGTACCGTGTCTTGAGTGTTaGCCAGGGCAAATGACAGGAAGGCTTCAAAGGGTT +
Preference number: 6 (lower is better)
Translates to: CRHARTVPCLEC*PGQMTGRLQRV
Trigger: AACCCTTTGAAGCCTTCCTGTCATTTGCCCTGGCAAACACTCAAGACACGGTACGGTTCGTGCATGTCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 72 bp GAACCGTACCGTGTCTTGAGTGTTTGCCAGGGCAAATaGCAGGAAGGCTTCAAAGGGTTTGCTCACTTTGTT +
Preference number: 6 (lower is better)
Translates to: EPYRVLSVCQGK*QEGFKGFAHFV
Trigger: AACAAAGTGAGCAAACCCTTTGAAGCCTTCCTGTCATTTGCCCTGGCAAACACTCAAGACACGGTACGGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS TCA 72 bp AGGCCACAGTCTCCTCATCCACTGTCTTTAGTGGCTTaGAAAGGCAGAAATACTTCTTGTGACCGTTCAGGG +
Preference number: 6 (lower is better)
Translates to: RPQSPHPLSLVA*KGRNTSCDRSG
Trigger: CCCTGAACGGTCACAAGAAGTATTTCTGCCTTTTCAAGCCACTAAAGACAGTGGATGAGGAGACTGTGGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS GCA 72 bp ACTCTGTATGGGTCAAAATCCAATGCAGACAGGCTTTaGAGGATCAGAACCAGAACCATCAAGAATCGCCAG +
Preference number: 6 (lower is better)
Translates to: TLYGSKSNADRL*RIRTRTIKNRQ
Trigger: CTGGCGATTCTTGATGGTTCTGGTTCTGATCCTGCAAAGCCTGTCTGCATTGGATTTTGACCCATACAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038014.11
ENSMUST00000153880.2
CDS CAA 72 bp GACTCTGTATGGGTCAAAATCCAATGCAGACAGGCTTaGCAGGATCAGAACCAGAACCATCAAGAATCGCCA +
Preference number: 6 (lower is better)
Translates to: DSVWVKIQCRQA*QDQNQNHQESP
Trigger: TGGCGATTCTTGATGGTTCTGGTTCTGATCCTGCAAAGCCTGTCTGCATTGGATTTTGACCCATACAGAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038014.11
ENSMUST00000153880.2
CDS CAA 72 bp TTTGCCAGGGCAAATGACAGGAAGGCTTCAAAGGGTTaGCTCACTTTGTTAGTCTCAGCTGTCAGTAAAACC +
Preference number: 6 (lower is better)
Translates to: FARANDRKASKG*LTLLVSAVSKT
Trigger: GGTTTTACTGACAGCTGAGACTAACAAAGTGAGCAAACCCTTTGAAGCCTTCCTGTCATTTGCCCTGGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11
CDS CAA 90 bp TTTGCCAGGGCAAATGACAGGAAGGCTTCAAAGGGTTTGCTCACTTaGTTAGTCTCAGCTGTCAGTAAAACCACGCAGTATTTTCTCTGT +
Preference number: 6 (lower is better)
Translates to: FARANDRKASKGLLT*LVSAVSKTTQYFLC
Trigger: ACAGAGAAAATACTGCGTGGTTTTACTGACAGCTGAGACTAACAAAGTGAGCAAACCCTTTGAAGCCTTCCTGTCATTTGCCCTGGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038014.11