RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DNAJC14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025354

Ensembl transcript IDs: ENSMUST00000026410.2, ENSMUST00000217745.2, ENSMUST00000218001.2, ENSMUST00000218511.2, ENSMUST00000219508.2

Found 231 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGAGAGATAAGATAAACCTATCTAAACTCCAAGAAGGAAGAAACTaGAAAATGGGGTTCCTGGGTCCAGTCTTCATAGGGTCAAGATTC +
Preference number: 1 (lower is better)
Translates to: LRDKINLSKLQEGRN*KMGFLGPVFIGSRF
Trigger: GAATCTTGACCCTATGAAGACTGGACCCAGGAACCCCATTTTCCAGTTTCTTCCTTCTTGGAGTTTAGATAGGTTTATCTTATCTCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR TCA 90 bp CCTCTATCTAGCAAGAAGCCATCATTGTTTGGGCAGCTTTTCTGGTaGTTATGTTTTTCCATATCTTCTAAACCTACCAACTTCAAGTTC +
Preference number: 1 (lower is better)
Translates to: PLSSKKPSLFGQLFW*LCFSISSKPTNFKF
Trigger: GAACTTGAAGTTGGTAGGTTTAGAAGATATGGAAAAACATAATCACCAGAAAAGCTGCCCAAACAATGATGGCTTCTTGCTAGATAGAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR TCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCAAAAGAGCTCACAAGTaGGTAGTGGAGGCACATGCC +
Preference number: 2 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSKRAHK*VVEAHA
Trigger: GGCATGTGCCTCCACTACTCACTTGTGAGCTCTTTT...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCGGACTCCCAGCTACATaGGTAAAGAAGAGAAGGAAG +
Preference number: 2 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSGLPAT*VKKRRK
Trigger: CTTCCTTCTCTTCTTTACCCATGTAGCTGGGAGTCC...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGGGACTCCCAGCTACATaGGTAAAGAAGAGAAGGAAG +
Preference number: 2 (lower is better)
Translates to: STLPRCSACCCLSYPSSMGLPAT*VKKRRK
Trigger: CTTCCTTCTCTTCTTTACCCATGTAGCTGGGAGTCC...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR TCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGTGTACACAGCCCTTTTaGCTCCCTGACATTGATTTG +
Preference number: 2 (lower is better)
Translates to: STLPRCSACCCLSYPSSMCTQPF*LPDIDL
Trigger: CAAATCAATGTCAGGGAGTCAAAAGGGCTGTGTACA...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR TCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTGTACACAGCCCTTTTaGCTCCCTGACATTGATTTG +
Preference number: 2 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSCTQPF*LPDIDL
Trigger: CAAATCAATGTCAGGGAGTCAAAAGGGCTGTGTACA...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR TCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGAAAAGAGCTCACAAGTaGGTAGTGGAGGCACATGCC +
Preference number: 2 (lower is better)
Translates to: TKYDAAHFLINTASLLSVKRAHK*VVEAHA
Trigger: GGCATGTGCCTCCACTACTCACTTGTGAGCTCTTTT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCAAAAATACAAACCCTTaGCTAACAAGGGGGCCTCTG +
Preference number: 2 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSKNTNP*LTRGPL
Trigger: CAGAGGCCCCCTTGTTAGCCAAGGGTTTGTATTTTT...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR TCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGCTAAGTTCTTTGCTCTaGCCACCTCCTATTTCTTTG +
Preference number: 2 (lower is better)
Translates to: STLPRCSACCCLSYPSSMLSSLL*PPPISL
Trigger: CAAAGAAATAGGAGGTGGTCAGAGCAAAGAACTTAG...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGAGAATCACTGCAATCTaGAGTCCAGCCTGGTCTACA +
Preference number: 2 (lower is better)
Translates to: TKYDAAHFLINTASLLSVRITAI*SPAWST
Trigger: TGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGGAAGAAACTGGAAAATaGGGTTCCTGGGTCCAGTCT +
Preference number: 2 (lower is better)
Translates to: TKYDAAHFLINTASLLSVEETGK*GSWVQS
Trigger: AGACTGGACCCAGGAACCCCATTTTCCAGTTTCTTC...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCACAAGATTCAGTTCCTaGGTGTTGGGGAAGAGGGAG +
Preference number: 2 (lower is better)
Translates to: RQENHCNLESSLVYTVRLTRFSS*VLGKRE
Trigger: CTCCCTCTTCCCCAACACCCAGGAACTGAATCTTGT...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGAAAAATACAAACCCTTaGCTAACAAGGGGGCCTCTG +
Preference number: 2 (lower is better)
Translates to: TKYDAAHFLINTASLLSVKNTNP*LTRGPL
Trigger: CAGAGGCCCCCTTGTTAGCCAAGGGTTTGTATTTTT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCAAGAAGGAAGAAACTaGAAAATGGGGTTCCTGGGT +
Preference number: 2 (lower is better)
Translates to: TKYDAAHFLINTASLLSVQEGRN*KMGFLG
Trigger: ACCCAGGAACCCCATTTTCCAGTTTCTTCCTTCTTG...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR TCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGTCTTTCAGTTATGGCTaGAATTTGATAAGCAAGGAC +
Preference number: 2 (lower is better)
Translates to: STLPRCSACCCLSYPSSMSFSYG*NLISKD
Trigger: GTCCTTGCTTATCAAATTTCAGCCATAACTGAAAGA...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR TCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCCTAAGTTCTTTGCTCTaGCCACCTCCTATTTCTTTG +
Preference number: 2 (lower is better)
Translates to: RQENHCNLESSLVYTVRLLSSLL*PPPISL
Trigger: CAAAGAAATAGGAGGTGGTCAGAGCAAAGAACTTAG...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR GCA 90 bp AAACTGACTTGGAGAAAGGAAGCAAAAAGGGCTCCAAAAGTCATATATGCTGAATGCTCAGCGTGCTGCTaGCTAAGCTACCCCAGTTCC +
Preference number: 2 (lower is better)
Translates to: KLTWRKEAKRAPKVIYAECSACC*LSYPSS
Trigger: GGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCA...TTCAGCATATATGACTTTTGGAGCCCTTTTTGCTTCCTTTCTCCAAGTCAGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026410.2
3UTR CAA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTaGCTAGTTCTGCAGGCATTGAGGGAAGGCACTGGAACTAATATA +
Preference number: 2 (lower is better)
Translates to: PWGSSLWNQQILKDG*LVLQALREGTGTNI
Trigger: TATATTAGTTCCAGTGCCTTCCCTCAATGCCTGCAGAACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTAGAATCACTGCAATCTaGAGTCCAGCCTGGTCTACA +
Preference number: 2 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVRITAI*SPAWST
Trigger: TGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCT...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTGAAGCCATCATTGTTTaGGCAGCTTTTCTGGTGATT +
Preference number: 2 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVEAIIV*AAFLVI
Trigger: AATCACCAGAAAAGCTGCCCAAACAATGATGGCTTC...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR TCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCATCAGTTTCCACTCTTaGGTTCTGTGTCTCCAAAAT +
Preference number: 2 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTISFHS*VLCLQN
Trigger: ATTTTGGAGACACAGAACTCAAGAGTGGAAACTGAT...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR TCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTGGGCAGCTTTTCTGGTaGTTATGTTTTTCCATATCT +
Preference number: 2 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVGQLFW*LCFSIS
Trigger: AGATATGGAAAAACATAATCACCAGAAAAGCTGCCC...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCCACCTCCTATTTCTTTaGTATTGTCAGAAAACAAGA +
Preference number: 2 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTHLLFL*YCQKTR
Trigger: TCTTGTTTTCTGACAATACCAAAGAAATAGGAGGTG...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTCACCTCCTATTTCTTTaGTATTGTCAGAAAACAAGA +
Preference number: 2 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVHLLFL*YCQKTR
Trigger: TCTTGTTTTCTGACAATACCAAAGAAATAGGAGGTG...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR CAA 90 bp AAGGAAGCAAAAAGGGCTCCAAAAGTCATATATGCTGAAACAGCTTaGGCTGTCATTTGCAGTTTATCATTAACCATTAACAAACAAACT +
Preference number: 2 (lower is better)
Translates to: KEAKRAPKVIYAETA*AVICSLSLTINKQT
Trigger: AGTTTGTTTGTTAATGGTTAATGATAAACTGCAAATGACAGCCAAAGCTGTTTCAGCATATATGACTTTTGGAGCCCTTTTTGCTTCCTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026410.2
3UTR GCA 72 bp ACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTaGTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCC +
Preference number: 3 (lower is better)
Translates to: TMLLTSSSTLPR*SACCCLSYPSS
Trigger: GGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CAA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGAGAAGCCATCATTGTTaGGGCAGCTTTTCTGGTGAT +
Preference number: 3 (lower is better)
Translates to: STLPRCSACCCLSYPSSMRSHHC*GSFSGD
Trigger: ATCACCAGAAAAGCTGCCCAAACAATGATGGCTTCT...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CAA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGCCACCTCCTATTTCTTaGGTATTGTCAGAAAACAAG +
Preference number: 3 (lower is better)
Translates to: STLPRCSACCCLSYPSSMPPPIS*VLSENK
Trigger: CTTGTTTTCTGACAATACCAAAGAAATAGGAGGTGG...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CAA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGATACTAAAAGATGGTTaGCTAGTTCTGCAGGCATTG +
Preference number: 3 (lower is better)
Translates to: STLPRCSACCCLSYPSSMILKDG*LVLQAL
Trigger: CAATGCCTGCAGAACTAGCAAACCATCTTTTAGTAT...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR-3UTR CAA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGATGGGGTTCGTCTCTTaGGAATCAACAAATACTAAA +
Preference number: 3 (lower is better)
Translates to: TKYDAAHFLINTASLLSVMGFVS*ESTNTK
Trigger: TTTAGTATTTGTTGATTCCAAAGAGACGAACCCCAT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGGAGGGGACTCTGGAGTaGCCCTCTGCCGGCCACTGG +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMEGTLE*PSAGHW
Trigger: CCAGTGGCCGGCAGAGGGCCACTCCAGAGTCCCCTC...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGTCCAGCCTAACCGGTTaGCCAGTCCCACCGAAAACC +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMSSLTG*PVPPKT
Trigger: GGTTTTCGGTGGGACTGGGCAACCGGTTAGGCTGGA...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCACCCAGGGCAGCTCCTaGCAGCCCCACTGTATTAAC +
Preference number: 4 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSTQGSS*QPHCIN
Trigger: GTTAATACAGTGGGGCTGGCAGGAGCTGCCCTGGGT...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGTGGTCCTGGACCCCTTaGAGGACCATGGCTTGGATC +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMWSWTP*RTMAWI
Trigger: GATCCAAGCCATGGTCCTCCAAGGGGTCCAGGACCA...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCGAGGGGACTCTGGAGTaGCCCTCTGCCGGCCACTGG +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLEGTLE*PSAGHW
Trigger: CCAGTGGCCGGCAGAGGGCCACTCCAGAGTCCCCTC...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCACCATGGCTTGGATCTaGCCAGTGGGCTGGATTTGG +
Preference number: 4 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSTMAWI*PVGWIW
Trigger: CCAAATCCAGCCCACTGGTCAGATCCAAGCCATGGT...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGACCATGGCTTGGATCTaGCCAGTGGGCTGGATTTGG +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMTMAWI*PVGWIW
Trigger: CCAAATCCAGCCCACTGGTCAGATCCAAGCCATGGT...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCCCGCAAAATTTTaGAGGCCTCCTCAGCCCGGG +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVLPAKF*RPPQPG
Trigger: CCCGGGCTGAGGAGGCCTTCAAAATTTTGCGGGCAG...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCCAAGGCTGGAGAGGTaGAATGGTGGCAAAGGCTGC +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVPRLER*NGGKGC
Trigger: GCAGCCTTTGCCACCATTGCACCTCTCCAGCCTTGG...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGCCTTCCTCAGCAGGATaGAGCCTGTTACACTCAGCA +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMPSSAG*SLLHSA
Trigger: TGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGG...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCGGCTCAAGAAATCCTaGAGGTCAGCAGGAGGGGAC +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVRLKKS*RSAGGD
Trigger: GTCCCCTCCTGCTGACCTGCAGGATTTCTTGAGCCG...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCCCAGTGGGCTGGATTTaGAGGCTGTGTGTACTTAGG +
Preference number: 4 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSPVGWI*RLCVLR
Trigger: CCTAAGTACACACAGCCTCCAAATCCAGCCCACTGG...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCCCCTTGGAGGACCATaGCTTGGATCTGACCAGTGG +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVPLGGP*LGSDQW
Trigger: CCACTGGTCAGATCCAAGCCATGGTCCTCCAAGGGG...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCGGACTCCCATCCTCCTaGTACCCAGTCTCATTCTCT +
Preference number: 4 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSGLPSS*YPVSFS
Trigger: AGAGAATGAGACTGGGTACCAGGAGGATGGGAGTCC...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCCAGCCGATGACGACCTaGGGCCTTGGGTTCTCTGCG +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLQPMTT*GLGFSA
Trigger: CGCAGAGAACCCAAGGCCCCAGGTCGTCATCGGCTG...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCACTCAGCACAGTATCTaGCACTCTTGGGTTCCCGGT +
Preference number: 4 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSTQHSI*HSWVPG
Trigger: ACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGT...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGACTCAGCACAGTATCTaGCACTCTTGGGTTCCCGGT +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMTQHSI*HSWVPG
Trigger: ACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGT...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGGAGATACCCACACGCTaGCATCCAGCCCACTCTGTG +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVEIPTR*HPAHSV
Trigger: CACAGAGTGGGCTGGATGCCAGCGTGTGGGTATCTC...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCCAAAGAAGTTCCCATTaGACATCGGCCCCGGAGGTA +
Preference number: 4 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSQRSSH*TSAPEV
Trigger: TACCTCCGGGGCCGATGTCCAATGGGAACTTCTTTG...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGCAGAAACTCATTCACTaGCCGGCTGAGCTCATTCTC +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMQKLIH*PAELIL
Trigger: GAGAATGAGCTCAGCCGGTCAGTGAATGAGTTTCTG...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTTGATCAGAAAACGGTaGTTCTGCCTCCGGGACAAG +
Preference number: 4 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSLIRKR*FCLRDK
Trigger: CTTGTCCCGGAGGCAGAAGCACCGTTTTCTGATCAA...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGAAAGGTCCAGGTCACTaGCTTTCAGCTTCCTGCATG +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMKGPGH*LSASCM
Trigger: CATGCAGGAAGCTGAAAGGCAGTGACCTGGACCTTT...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGAACCTTACCAGCTGCTaGCATGGCCTGCTATCTTTC +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMNLTSC*HGLLSF
Trigger: GAAAGATAGCAGGCCATGGCAGCAGCTGGTAAGGTT...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGAGGGCCAGGGTGAGGTaGGGCAAAGAAGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVRARVR*GKEVPI
Trigger: AATGGGAACTTCTTTGCCGCACCTCACCCTGGCCCT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGATCTTCCCCCAAGGCTaGAGAGGTGCAATGGTGGCA +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVIFPQG*RGAMVA
Trigger: TGCCACCATTGCACCTCTCCAGCCTTGGGGGAAGAT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGACTTCCTCTTCAGGCTaGCAGTATCGCCCGCTAGCT +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVTSSSG*QYRPLA
Trigger: AGCTAGCGGGCGATACTGCCAGCCTGAAGAGGAAGT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCGCTTATCTGTCTaGCTTCTTTTTCGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVLRLSV*LLFRAS
Trigger: GCTGGCCCGAAAAAGAAGTCAGACAGATAAGCGCAG...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCCTGCTTGTCCAAGCTaGCATAGTTCCTCTACTCCC +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVPACPS*HSSSTP
Trigger: GGGAGTAGAGGAACTATGTCAGCTTGGACAAGCAGG...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGAGCAGAGTCAAGCAATaGTGCAAGGCTGGAGAACCC +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVSRVKQ*CKAGEP
Trigger: GGGTTCTCCAGCCTTGCATCATTGCTTGACTCTGCT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCCCAAGGCTGGAGAGGTaGAATGGTGGCAAAGGCTGC +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLPRLER*NGGKGC
Trigger: GCAGCCTTTGCCACCATTGCACCTCTCCAGCCTTGG...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCATTAACCTTACCAGCTaGTGCCATGGCCTGCTATCT +
Preference number: 4 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSINLTS*CHGLLS
Trigger: AGATAGCAGGCCATGGCAGCAGCTGGTAAGGTTAAT...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGATTAACCTTACCAGCTaGTGCCATGGCCTGCTATCT +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMINLTS*CHGLLS
Trigger: AGATAGCAGGCCATGGCAGCAGCTGGTAAGGTTAAT...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCACCCAGGGCAGCTCCTaGCAGCCCCACTGTATTAAC +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLTQGSS*QPHCIN
Trigger: GTTAATACAGTGGGGCTGGCAGGAGCTGCCCTGGGT...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGGCTTTCCTTGGCATCTaGTGCACATCATCGTGTTCA +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMAFLGI*CTSSCS
Trigger: TGAACACGATGATGTGCAGCAGATGCCAAGGAAAGC...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCCGGCTCAAGAAATCCTaGAGGTCAGCAGGAGGGGAC +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLRLKKS*RSAGGD
Trigger: GTCCCCTCCTGCTGACCTGCAGGATTTCTTGAGCCG...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGGGACTCCCATCCTCCTaGTACCCAGTCTCATTCTCT +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVGLPSS*YPVSFS
Trigger: AGAGAATGAGACTGGGTACCAGGAGGATGGGAGTCC...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGGGAGAGGTGCAATGGTaGCAAAGGCTGCTAGAAGAG +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVGEVQW*QRLLEE
Trigger: CTCTTCTAGCAGCCTTTGCCACCATTGCACCTCTCC...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGGCTGGAGAGGTGCAATaGTGGCAAAGGCTGCTAGAA +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVAGEVQ*WQRLLE
Trigger: TTCTAGCAGCCTTTGCCACCATTGCACCTCTCCAGC...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTCTGGCTTAGAAACTaGAACATCATGCGGGCCCAG +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVLWLRN*NIMRAQ
Trigger: CTGGGCCCGCATGATGTTCCAGTTTCTAAGCCAGAG...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGAGTCTCATTCTCTCTTaGGAGTTCCTGGTCCACTCC +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVSLILS*EFLVHS
Trigger: GGAGTGGACCAGGAACTCTCAAGAGAGAATGAGACT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCCCGAACATCCTCCTTaGTCAGAAAACGGTGCTTCT +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVPEHPP*SENGAS
Trigger: AGAAGCACCGTTTTCTGATCAAGGAGGATGTTCGGG...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGTGTTCATTGCCTCCTTaGGGTCATCTTGTAGTTTCG +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMCSLPP*GHLVVS
Trigger: CGAAACTACAAGATGACCTCAAGGAGGCAATGAACA...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGTTGATCAGAAAACGGTaGTTCTGCCTCCGGGACAAG +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVLIRKR*FCLRDK
Trigger: CTTGTCCCGGAGGCAGAAGCACCGTTTTCTGATCAA...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGTTTCAGCTTCCTGCATaGGTAAATGAGATGGCCACA +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMFQLPA*VNEMAT
Trigger: TGTGGCCATCTCATTTACGCATGCAGGAAGCTGAAA...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCTCAGCCCGGGGATGGTaGTTTTTATCAGGATGGACC +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLSARGW*FLSGWT
Trigger: GGTCCATCCTGATAAAAATCACCATCCCCGGGCTGA...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGGACAATGTCCCAAGCTaGCCGCAAAATTTTGAAGGC +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVDNVPS*PQNFEG
Trigger: GCCTTCAAAATTTTGCGGGCAGCTTGGGACATTGTC...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGATTTCAAACCTCCTATaGTTTCCTTGGCATCTGCTG +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMISNLL*FPWHLL
Trigger: CAGCAGATGCCAAGGAAAGCATAGGAGGTTTGAAAT...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCCCAGTGGGCTGGATTTaGAGGCTGTGTGTACTTAGG +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLPVGWI*RLCVLR
Trigger: CCTAAGTACACACAGCCTCCAAATCCAGCCCACTGG...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCACTCCAGGGCTTCCCTaGCAGTTACAAGCAGATGGA +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLTPGLP*QLQADG
Trigger: TCCATCTGCTTGTAACTGCCAGGGAAGCCCTGGAGT...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCGCTGGAGAGGTGCAATaGTGGCAAAGGCTGCTAGAA +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLAGEVQ*WQRLLE
Trigger: TTCTAGCAGCCTTTGCCACCATTGCACCTCTCCAGC...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGACACAGAAGAAGCTCTaGCTTAGAAACTGGAACATC +
Preference number: 4 (lower is better)
Translates to: STLPRCSACCCLSYPSSMTQKKL*LRNWNI
Trigger: GATGTTCCAGTTTCTAAGCCAGAGCTTCTTCTGTGT...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGAGTATCTGGCACTCTTaGGTTCCCGGTCCATTTCAA +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVSIWHS*VPGPFQ
Trigger: TTGAAATGGACCGGGAACCCAAGAGTGCCAGATACT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGTACCCGAGAACCAAATaGGATGTGGTAAGGAACTCT +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVYPRTK*DVVRNS
Trigger: AGAGTTCCTTACCACATCTCATTTGGTTCTCGGGTA...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCAACCTTACCAGCTGCTaGCATGGCCTGCTATCTTTC +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLNLTSC*HGLLSF
Trigger: GAAAGATAGCAGGCCATGGCAGCAGCTGGTAAGGTT...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGGCTGAGCTCATTCTCTaGCATCCGTTTCATCTCATA +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVAELIL*HPFHLI
Trigger: TATGAGATGAAACGGATGGCAGAGAATGAGCTCAGC...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCTCTCTGCTGAGTCCCTaGGTCCTGAGAATGAAAGTA +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLSLLSP*VLRMKV
Trigger: TACTTTCATTCTCAGGACTCAGGGACTCAGCAGAGA...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCTCTCTTGAGAGTTCCTaGTCCACTCCTGACTCTTCT +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLSLESS*STPDSS
Trigger: AGAAGAGTCAGGAGTGGACCAGGAACTCTCAAGAGA...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGAGGGTTTCTTTCCACTaGACACACGTGAAAAATCAC +
Preference number: 4 (lower is better)
Translates to: TKYDAAHFLINTASLLSVRVSFH*THVKNH
Trigger: GTGATTTTTCACGTGTGTCCAGTGGAAAGAAACCCT...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCCTCCTATGCTTTCCTTaGCATCTGCTGCACATCATC +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLLLCFP*HLLHII
Trigger: GATGATGTGCAGCAGATGCCAAGGAAAGCATAGGAG...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCTCAACCCCCAGCACATaGAAAGGGTTTAGTTCATCT +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLSTPST*KGFSSS
Trigger: AGATGAACTAAACCCTTTTCATGTGCTGGGGGTTGA...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGCTGCCCGCAAAATTTTaGAGGCCTCCTCAGCCCGGG +
Preference number: 4 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWLPAKF*RPPQPG
Trigger: CCCGGGCTGAGGAGGCCTTCAAAATTTTGCGGGCAG...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCCATCATCGTGTTCATTaGCTCCTTGAGGTCATCTTG +
Preference number: 4 (lower is better)
Translates to: RQENHCNLESSLVYTVRLHHRVH*LLEVIL
Trigger: CAAGATGACCTCAAGGAGGCAATGAACACGATGATG...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCCAGCCGATGACGACCTaGGGCCTTGGGTTCTCTGCG +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTQPMTT*GLGFSA
Trigger: CGCAGAGAACCCAAGGCCCCAGGTCGTCATCGGCTG...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGTCCAGCCTAACCGGTTaGCCAGTCCCACCGAAAACC +
Preference number: 4 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWSSLTG*PVPPKT
Trigger: GGTTTTCGGTGGGACTGGGCAACCGGTTAGGCTGGA...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGCCCCTTGGAGGACCATaGCTTGGATCTGACCAGTGG +
Preference number: 4 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWPLGGP*LGSDQW
Trigger: CCACTGGTCAGATCCAAGCCATGGTCCTCCAAGGGG...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGAGGGCCAGGGTGAGGTaGGGCAAAGAAGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWRARVR*GKEVPI
Trigger: AATGGGAACTTCTTTGCCGCACCTCACCCTGGCCCT...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTTGGTCCTGGACCCCTTaGAGGACCATGGCTTGGATC +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVWSWTP*RTMAWI
Trigger: GATCCAAGCCATGGTCCTCCAAGGGGTCCAGGACCA...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTTCCTCTAGGTGGTCCTaGACCCCTTGGAGGACCATG +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVSSRWS*TPWRTM
Trigger: CATGGTCCTCCAAGGGGTCCAGGACCACCTAGAGGA...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCTCCTCTAGGTGGTCCTaGACCCCTTGGAGGACCATG +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTSSRWS*TPWRTM
Trigger: CATGGTCCTCCAAGGGGTCCAGGACCACCTAGAGGA...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCGAGATACCCACACGCTaGCATCCAGCCCACTCTGTG +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTEIPTR*HPAHSV
Trigger: CACAGAGTGGGCTGGATGCCAGCGTGTGGGTATCTC...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGTCAGCCCGGGGATGGTaGTTTTTATCAGGATGGACC +
Preference number: 4 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWSARGW*FLSGWT
Trigger: GGTCCATCCTGATAAAAATCACCATCCCCGGGCTGA...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTCATTCACTGACCGGCTaGGCTCATTCTCTGCCATCC +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVHSLTG*AHSLPS
Trigger: GGATGGCAGAGAATGAGCTCAGCCGGTCAGTGAATG...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCCATTCACTGACCGGCTaGGCTCATTCTCTGCCATCC +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTHSLTG*AHSLPS
Trigger: GGATGGCAGAGAATGAGCTCAGCCGGTCAGTGAATG...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGTTCTCCCTTGGGTACTaGACTGTTGGGCCTAGAGGT +
Preference number: 4 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWFSLGY*TVGPRG
Trigger: ACCTCTAGGCCCAACAGTTCAGTACCCAAGGGAGAA...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGCCTTCCTCAGCAGGATaGAGCCTGTTACACTCAGCA +
Preference number: 4 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWPSSAG*SLLHSA
Trigger: TGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGG...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGACTCCAGGGCTTCCCTaGCAGTTACAAGCAGATGGA +
Preference number: 4 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWTPGLP*QLQADG
Trigger: TCCATCTGCTTGTAACTGCCAGGGAAGCCCTGGAGT...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCATCTTCCCCCAAGGCTaGAGAGGTGCAATGGTGGCA +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTIFPQG*RGAMVA
Trigger: TGCCACCATTGCACCTCTCCAGCCTTGGGGGAAGAT...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCACTTCCTCTTCAGGCTaGCAGTATCGCCCGCTAGCT +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTTSSSG*QYRPLA
Trigger: AGCTAGCGGGCGATACTGCCAGCCTGAAGAGGAAGT...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTCTGCGCTTATCTGTCTaGCTTCTTTTTCGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVLRLSV*LLFRAS
Trigger: GCTGGCCCGAAAAAGAAGTCAGACAGATAAGCGCAG...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTCCTGCTTGTCCAAGCTaGCATAGTTCCTCTACTCCC +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVPACPS*HSSSTP
Trigger: GGGAGTAGAGGAACTATGTCAGCTTGGACAAGCAGG...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTAGCAGAGTCAAGCAATaGTGCAAGGCTGGAGAACCC +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVSRVKQ*CKAGEP
Trigger: GGGTTCTCCAGCCTTGCATCATTGCTTGACTCTGCT...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTTTCTCCCTTGGGTACTaGACTGTTGGGCCTAGAGGT +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVFSLGY*TVGPRG
Trigger: ACCTCTAGGCCCAACAGTTCAGTACCCAAGGGAGAA...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTCTTGGATCTGACCAGTaGGCTGGATTTGGAGGCTGT +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVLGSDQ*AGFGGC
Trigger: ACAGCCTCCAAATCCAGCCCACTGGTCAGATCCAAG...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCGGAGAGGTGCAATGGTaGCAAAGGCTGCTAGAAGAG +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTGEVQW*QRLLEE
Trigger: CTCTTCTAGCAGCCTTTGCCACCATTGCACCTCTCC...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp AAACTGACTTGGAGAAAGGAAGCAAAAAGGGCTCCAAAAGTCATATATGCTGAACTCTGGCTTAGAAACTaGAACATCATGCGGGCCCAG +
Preference number: 4 (lower is better)
Translates to: KLTWRKEAKRAPKVIYAELWLRN*NIMRAQ
Trigger: CTGGGCCCGCATGATGTTCCAGTTTCTAAGCCAGAG...TTCAGCATATATGACTTTTGGAGCCCTTTTTGCTTCCTTTCTCCAAGTCAGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026410.2
CDS-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCCAAAGAAGTTCCCATTaGACATCGGCCCCGGAGGTA +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTQRSSH*TSAPEV
Trigger: TACCTCCGGGGCCGATGTCCAATGGGAACTTCTTTG...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp AAACTGACTTGGAGAAAGGAAGCAAAAAGGGCTCCAAAAGTCATATATGCTGAAGTTTGGCTTCTCCCTTaGGTACTGAACTGTTGGGCC +
Preference number: 4 (lower is better)
Translates to: KLTWRKEAKRAPKVIYAEVWLLP*VLNCWA
Trigger: GGCCCAACAGTTCAGTACCCAAGGGAGAAGCCAAAC...TTCAGCATATATGACTTTTGGAGCCCTTTTTGCTTCCTTTCTCCAAGTCAGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026410.2
CDS-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCGTTTGGCTTCTCCCTTaGGTACTGAACTGTTGGGCC +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTVWLLP*VLNCWA
Trigger: GGCCCAACAGTTCAGTACCCAAGGGAGAAGCCAAAC...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCAAAGGTCCAGGTCACTaGCTTTCAGCTTCCTGCATG +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTKGPGH*LSASCM
Trigger: CATGCAGGAAGCTGAAAGGCAGTGACCTGGACCTTT...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTTCTCTGCTGAGTCCCTaGGTCCTGAGAATGAAAGTA +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVSLLSP*VLRMKV
Trigger: TACTTTCATTCTCAGGACTCAGGGACTCAGCAGAGA...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCATCCAGCCCACTCTGTaGTGTCATACACCTTTCCAT +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTIQPTL*CHTPFH
Trigger: ATGGAAAGGTGTATGACATCACAGAGTGGGCTGGAT...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTATCCAGCCCACTCTGTaGTGTCATACACCTTTCCAT +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVIQPTL*CHTPFH
Trigger: ATGGAAAGGTGTATGACATCACAGAGTGGGCTGGAT...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTGACAATGTCCCAAGCTaGCCGCAAAATTTTGAAGGC +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVDNVPS*PQNFEG
Trigger: GCCTTCAAAATTTTGCGGGCAGCTTGGGACATTGTC...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGGCTGAGCTCATTCTCTaGCATCCGTTTCATCTCATA +
Preference number: 4 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWAELIL*HPFHLI
Trigger: TATGAGATGAAACGGATGGCAGAGAATGAGCTCAGC...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCGCTTTCCTTGGCATCTaGTGCACATCATCGTGTTCA +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTAFLGI*CTSSCS
Trigger: TGAACACGATGATGTGCAGCAGATGCCAAGGAAAGC...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTCTCCTATGCTTTCCTTaGCATCTGCTGCACATCATC +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVLLCFP*HLLHII
Trigger: GATGATGTGCAGCAGATGCCAAGGAAAGCATAGGAG...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCAGTATCTGGCACTCTTaGGTTCCCGGTCCATTTCAA +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTSIWHS*VPGPFQ
Trigger: TTGAAATGGACCGGGAACCCAAGAGTGCCAGATACT...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGTCCACTGGACACACGTaGAAAATCACTGGGAAATTT +
Preference number: 4 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWSTGHT*KITGKF
Trigger: AAATTTCCCAGTGATTTTTCACGTGTGTCCAGTGGA...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTTCAACCCCCAGCACATaGAAAGGGTTTAGTTCATCT +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVSTPST*KGFSSS
Trigger: AGATGAACTAAACCCTTTTCATGTGCTGGGGGTTGA...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp AAACTGACTTGGAGAAAGGAAGCAAAAAGGGCTCCAAAAGTCATATATGCTGAATGTTCATTGCCTCCTTaGGGTCATCTTGTAGTTTCG +
Preference number: 4 (lower is better)
Translates to: KLTWRKEAKRAPKVIYAECSLPP*GHLVVS
Trigger: CGAAACTACAAGATGACCTCAAGGAGGCAATGAACA...TTCAGCATATATGACTTTTGGAGCCCTTTTTGCTTCCTTTCTCCAAGTCAGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026410.2
CDS-3UTR TCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCTACCCGAGAACCAAATaGGATGTGGTAAGGAACTCT +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTYPRTK*DVVRNS
Trigger: AGAGTTCCTTACCACATCTCATTTGGTTCTCGGGTA...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCCATCATCGTGTTCATTaGCTCCTTGAGGTCATCTTG +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTHHRVH*LLEVIL
Trigger: CAAGATGACCTCAAGGAGGCAATGAACACGATGATG...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCTTCCTTGGCATCTGCTaGACATCATCGTGTTCATTG +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTFLGIC*TSSCSL
Trigger: CAATGAACACGATGATGTGCAGCAGATGCCAAGGAA...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTTTCCTTGGCATCTGCTaGACATCATCGTGTTCATTG +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVFLGIC*TSSCSL
Trigger: CAATGAACACGATGATGTGCAGCAGATGCCAAGGAA...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR TCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTTCCACTGGACACACGTaGAAAATCACTGGGAAATTT +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVSTGHT*KITGKF
Trigger: AAATTTCCCAGTGATTTTTCACGTGTGTCCAGTGGA...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR GCA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTATTTCAAACCTCCTATaGTTTCCTTGGCATCTGCTG +
Preference number: 4 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVISNLL*FPWHLL
Trigger: CAGCAGATGCCAAGGAAAGCATAGGAGGTTTGAAAT...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCAGGGTTTCTTTCCACTaGACACACGTGAAAAATCAC +
Preference number: 4 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTRVSFH*THVKNH
Trigger: GTGATTTTTCACGTGTGTCCAGTGGAAAGAAACCCT...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CCA 90 bp AAACTGACTTGGAGAAAGGAAGCAAAAAGGGCTCCAAAAGTCATATATGCTGAAACACAGAAGAAGCTCTaGCTTAGAAACTGGAACATC +
Preference number: 4 (lower is better)
Translates to: KLTWRKEAKRAPKVIYAETQKKL*LRNWNI
Trigger: GATGTTCCAGTTTCTAAGCCAGAGCTTCTTCTGTGT...TTCAGCATATATGACTTTTGGAGCCCTTTTTGCTTCCTTTCTCCAAGTCAGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026410.2
3UTR CAA 72 bp CTCACTCTCCTCTATCTAGCAAGAAGCCATCATTGTTaGGGCAGCTTTTCTGGTGATTATGTTTTTCCATAT +
Preference number: 4 (lower is better)
Translates to: LTLLYLARSHHC*GSFSGDYVFPY
Trigger: ATATGGAAAAACATAATCACCAGAAAAGCTGCCCAAACAATGATGGCTTCTTGCTAGATAGAGGAGAGTGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
3UTR CAA 72 bp AAAAGGGCTCCAAAAGTCATATATGCTGAAACAGCTTaGGCTGTCATTTGCAGTTTATCATTAACCATTAAC +
Preference number: 4 (lower is better)
Translates to: KRAPKVIYAETA*AVICSLSLTIN
Trigger: GTTAATGGTTAATGATAAACTGCAAATGACAGCCAAAGCTGTTTCAGCATATATGACTTTTGGAGCCCTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026410.2
CDS CCA 90 bp AAAGATCCGGCTCAAGAAATCCTGCAGGTCAGCAGGAGGGGACTCTaGAGTGGCCCTCTGCCGGCCACTGGTGCCGGGTACCCGAGAACC +
Preference number: 5 (lower is better)
Translates to: KDPAQEILQVSRRGL*SGPLPATGAGYPRT
Trigger: GGTTCTCGGGTACCCGGCACCAGTGGCCGGCAGAGGGCCACTCCAGAGTCCCCTCCTGCTGACCTGCAGGATTTCTTGAGCCGGATCTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 90 bp GCAGGTCAGCAGGAGGGGACTCTGGAGTGGCCCTCTGCCGGCCACTaGTGCCGGGTACCCGAGAACCAAATGAGATGTGGTAAGGAACTC +
Preference number: 5 (lower is better)
Translates to: AGQQEGTLEWPSAGH*CRVPENQMRCGKEL
Trigger: GAGTTCCTTACCACATCTCATTTGGTTCTCGGGTACCCGGCACCAGTGGCCGGCAGAGGGCCACTCCAGAGTCCCCTCCTGCTGACCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 90 bp ACTGAACTGTTGGGCCTAGAGGTCGAAGTGGTCCCAGGGCCAGGGTaGGGTGCGGCAAAGAAGTTCCCATTGGACATCGGCCCCGGAGGT +
Preference number: 5 (lower is better)
Translates to: TELLGLEVEVVPGPG*GAAKKFPLDIGPGG
Trigger: ACCTCCGGGGCCGATGTCCAATGGGAACTTCTTTGCCGCACCTCACCCTGGCCCTGGGACCACTTCGACCTCTAGGCCCAACAGTTCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 90 bp ACTGTTGGGCCTAGAGGTCGAAGTGGTCCCAGGGCCAGGGTGAGGTaGGGCAAAGAAGTTCCCATTGGACATCGGCCCCGGAGGTACTTG +
Preference number: 5 (lower is better)
Translates to: TVGPRGRSGPRARVR*GKEVPIGHRPRRYL
Trigger: CAAGTACCTCCGGGGCCGATGTCCAATGGGAACTTCTTTGCCGCACCTCACCCTGGCCCTGGGACCACTTCGACCTCTAGGCCCAACAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 90 bp AGTGGCCCTCTGCCGGCCACTGGTGCCGGGTACCCGAGAACCAAATaGGATGTGGTAAGGAACTCTGTGAGTATCTGGGGAGATACCCAC +
Preference number: 5 (lower is better)
Translates to: SGPLPATGAGYPRTK*DVVRNSVSIWGDTH
Trigger: GTGGGTATCTCCCCAGATACTCACAGAGTTCCTTACCACATCTCATTTGGTTCTCGGGTACCCGGCACCAGTGGCCGGCAGAGGGCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 90 bp GGTGCGGCAAAGAAGTTCCCATTGGACATCGGCCCCGGAGGTACTTaGAAGATCCGGCTCAAGAAATCCTGCAGGTCAGCAGGAGGGGAC +
Preference number: 5 (lower is better)
Translates to: GAAKKFPLDIGPGGT*KIRLKKSCRSAGGD
Trigger: GTCCCCTCCTGCTGACCTGCAGGATTTCTTGAGCCGGATCTTTCAAGTACCTCCGGGGCCGATGTCCAATGGGAACTTCTTTGCCGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 90 bp CCTCACTTTCTTCCGCCGTTTAGGTTTGGCTTCTCCCTTGGGTACTaGACTGTTGGGCCTAGAGGTCGAAGTGGTCCCAGGGCCAGGGTG +
Preference number: 5 (lower is better)
Translates to: PHFLPPFRFGFSLGY*TVGPRGRSGPRARV
Trigger: CACCCTGGCCCTGGGACCACTTCGACCTCTAGGCCCAACAGTTCAGTACCCAAGGGAGAAGCCAAACCTAAACGGCGGAAGAAAGTGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS-3UTR CAA 90 bp TCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTACCCCAGTTCCATGTTCTTAGTCCTCTGTTaGACCCAGGGCAGCTCCTGC +
Preference number: 5 (lower is better)
Translates to: STLPRCSACCCLSYPSSMFLVLC*TQGSSC
Trigger: GCAGGAGCTGCCCTGGGTCAAACAGAGGACTAAGAA...CATGGAACTGGGGTAGCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGGCTGCCCGCAAAATTTaGAAGGCCTCCTCAGCCCGG +
Preference number: 5 (lower is better)
Translates to: TKYDAAHFLINTASLLSVAARKI*KASSAR
Trigger: CCGGGCTGAGGAGGCCTTCAAAATTTTGCGGGCAGC...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCTTCCGCCTCTCTGGGTaGCTGACAATGTCCCAAGCT +
Preference number: 5 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSFRLSG*LTMSQA
Trigger: AGCTTGGGACATTGTCAGCAACCCAGAGAGGCGGAA...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS GCA 90 bp GCATTGCCCTGTTTCTTAGTCCTCTGTTTGACCCAGGGCAGCTCCTaGCAGCCCCACTGTATTAACCTTACCAGCTGCTGCCATGGCCTG +
Preference number: 5 (lower is better)
Translates to: ALPCFLVLCLTQGSS*QPHCINLTSCCHGL
Trigger: CAGGCCATGGCAGCAGCTGGTAAGGTTAATACAGTGGGGCTGGCAGGAGCTGCCCTGGGTCAAACAGAGGACTAAGAAACAGGGCAATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 90 bp GGTCACTTCCTCTTCAGGCTGGCAGTATCGCCCGCTAGCTACAGGTaGATTGCCCTGTTTCTTAGTCCTCTGTTTGACCCAGGGCAGCTC +
Preference number: 5 (lower is better)
Translates to: GHFLFRLAVSPASYR*IALFLSPLFDPGQL
Trigger: GAGCTGCCCTGGGTCAAACAGAGGACTAAGAAACAGGGCAATGCACCTGTAGCTAGCGGGCGATACTGCCAGCCTGAAGAGGAAGTGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 90 bp GGAACCCCAGCCATGGTCAAGAGTCGGGTCACTTCCTCTTCAGGCTaGCAGTATCGCCCGCTAGCTACAGGTGCATTGCCCTGTTTCTTA +
Preference number: 5 (lower is better)
Translates to: GTPAMVKSRVTSSSG*QYRPLATGALPCFL
Trigger: TAAGAAACAGGGCAATGCACCTGTAGCTAGCGGGCGATACTGCCAGCCTGAAGAGGAAGTGACCCGACTCTTGACCATGGCTGGGGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 90 bp AAGTGGTCCCAGGGCCAGGGTGAGGTGCGGCAAAGAAGTTCCCATTaGACATCGGCCCCGGAGGTACTTGAAAGATCCGGCTCAAGAAAT +
Preference number: 5 (lower is better)
Translates to: KWSQGQGEVRQRSSH*TSAPEVLERSGSRN
Trigger: ATTTCTTGAGCCGGATCTTTCAAGTACCTCCGGGGCCGATGTCCAATGGGAACTTCTTTGCCGCACCTCACCCTGGCCCTGGGACCACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 90 bp ACCAGCTGCTGCCATGGCCTGCTATCTTTCAGCAGAGTCAAGCAATaGTGCAAGGCTGGAGAACCCAGCCAAGAGAACAGCCAAGCGGTC +
Preference number: 5 (lower is better)
Translates to: TSCCHGLLSFSRVKQ*CKAGEPSQENSQAV
Trigger: GACCGCTTGGCTGTTCTCTTGGCTGGGTTCTCCAGCCTTGCATCATTGCTTGACTCTGCTGAAAGATAGCAGGCCATGGCAGCAGCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 90 bp CCCAGCATGCTCGACTCTGCCCAAAAGTCTCCTTCCTCAGCAGGATaGAGCCTGTTACACTCAGCACAGTATCTGGCACTCTTGGGTTCC +
Preference number: 5 (lower is better)
Translates to: PSMLDSAQKSPSSAG*SLLHSAQYLALLGS
Trigger: GGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCGAGCATGCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS-3UTR CAA 90 bp CTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCTGCTGCCTAAGCCAGTCTCATTCTCTCTaGAGAGTTCCTGGTCCACTC +
Preference number: 5 (lower is better)
Translates to: LLTSSSTLPRCSACCCLSQSHSL*RVPGPL
Trigger: GAGTGGACCAGGAACTCTCAAGAGAGAATGAGACTG...GCTTAGGCAGCAGCACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGGGTTTGGCTTCTCCCTaGGGTACTGAACTGTTGGGC +
Preference number: 5 (lower is better)
Translates to: TKYDAAHFLINTASLLSVGLASP*GTELLG
Trigger: GCCCAACAGTTCAGTACCCAAGGGAGAAGCCAAACC...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS CCA 90 bp CTCCCATCCTCCTGGTACCCAGTCTCATTCTCTCTTGAGAGTTCCTaGTCCACTCCTGACTCTTCTGAACCTGTCTCGCTCTCATCAGGG +
Preference number: 5 (lower is better)
Translates to: LPSSWYPVSFSLESS*STPDSSEPVSLSSG
Trigger: CCCTGATGAGAGCGAGACAGGTTCAGAAGAGTCAGGAGTGGACCAGGAACTCTCAAGAGAGAATGAGACTGGGTACCAGGAGGATGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218001.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS-3UTR CAA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCTTGGAGGACCATGGCTaGGATCTGACCAGTGGGCTG +
Preference number: 5 (lower is better)
Translates to: RQENHCNLESSLVYTVRLLEDHG*DLTSGL
Trigger: CAGCCCACTGGTCAGATCCAAGCCATGGTCCTCCAA...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGTTCCGCCGTTTAGGTTaGGCTTCTCCCTTGGGTACT +
Preference number: 5 (lower is better)
Translates to: TKYDAAHFLINTASLLSVFRRLG*ASPLGT
Trigger: AGTACCCAAGGGAGAAGCCAAACCTAAACGGCGGAA...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS GCA 90 bp TCTCTGCGTCCACTATCCCGAACATCCTCCTTGATCAGAAAACGGTaGTTCTGCCTCCGGGACAAGGGTTTCTTTCCACTGGACACACGT +
Preference number: 5 (lower is better)
Translates to: SLRPLSRTSSLIRKR*FCLRDKGFFPLDTR
Trigger: ACGTGTGTCCAGTGGAAAGAAACCCTTGTCCCGGAGGCAGAAGCACCGTTTTCTGATCAAGGAGGATGTTCGGGATAGTGGACGCAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 90 bp CCTGCCAGCCCCACTGTATTAACCTTACCAGCTGCTGCCATGGCCTaGTATCTTTCAGCAGAGTCAAGCAATGATGCAAGGCTGGAGAAC +
Preference number: 5 (lower is better)
Translates to: PASPTVLTLPAAAMA*YLSAESSNDARLEN
Trigger: GTTCTCCAGCCTTGCATCATTGCTTGACTCTGCTGAAAGATAGCAGGCCATGGCAGCAGCTGGTAAGGTTAATACAGTGGGGCTGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 90 bp CCATGGCCTGCTATCTTTCAGCAGAGTCAAGCAATGATGCAAGGCTaGAGAACCCAGCCAAGAGAACAGCCAAGCGGTCTTATCCCTCCA +
Preference number: 5 (lower is better)
Translates to: PWPAIFQQSQAMMQG*RTQPREQPSGLIPP
Trigger: TGGAGGGATAAGACCGCTTGGCTGTTCTCTTGGCTGGGTTCTCCAGCCTTGCATCATTGCTTGACTCTGCTGAAAGATAGCAGGCCATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 90 bp CCAGCACATGAAAAGGGTTTAGTTCATCTTCAGGAACCCCAGCCATaGTCAAGAGTCGGGTCACTTCCTCTTCAGGCTGGCAGTATCGCC +
Preference number: 5 (lower is better)
Translates to: PAHEKGLVHLQEPQP*SRVGSLPLQAGSIA
Trigger: GGCGATACTGCCAGCCTGAAGAGGAAGTGACCCGACTCTTGACCATGGCTGGGGTTCCTGAAGATGAACTAAACCCTTTTCATGTGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS-3UTR CAA 90 bp ACCAAGTACGATGCTGCTCACTTCCTCATCAACACTGCCTCGCTGCTCAGCGTGCCTCCTATGCTTTCCTaGGCATCTGCTGCACATCAT +
Preference number: 5 (lower is better)
Translates to: TKYDAAHFLINTASLLSVPPMLS*ASAAHH
Trigger: ATGATGTGCAGCAGATGCCAAGGAAAGCATAGGAGG...CACGCTGAGCAGCGAGGCAGTGTTGATGAGGAAGTGAGCAGCATCGTACTTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS TCA 90 bp CTGAGAATGAAAGTATTTCGGGGTCCACAGAGGATCCTGATGTACTaGGGGAGGTACCACCACTGCGGTGGGCTCCACACAACCTTCTTT +
Preference number: 5 (lower is better)
Translates to: LRMKVFRGPQRILMY*GRYHHCGGLHTTFF
Trigger: AAAGAAGGTTGTGTGGAGCCCACCGCAGTGGTGGTACCTCCCTCAGTACATCAGGATCCTCTGTGGACCCCGAAATACTTTCATTCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218001.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS TCA 90 bp AATACCAGAAGTTCAATCAGCCACCAGAAGCCTGCTTGTCCAAGCTaGCATAGTTCCTCTACTCCCCACAGTCCCAGGCCTCTGCGCTTA +
Preference number: 5 (lower is better)
Translates to: NTRSSISHQKPACPS*HSSSTPHSPRPLRL
Trigger: TAAGCGCAGAGGCCTGGGACTGTGGGGAGTAGAGGAACTATGTCAGCTTGGACAAGCAGGCTTCTGGTGGCTGATTGAACTTCTGGTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 90 bp CAGCAGGATGCAGCCTGTTACACTCAGCACAGTATCTGGCACTCTTaGGTTCCCGGTCCATTTCAAACCTCCTATGCTTTCCTTGGCATC +
Preference number: 5 (lower is better)
Translates to: QQDAACYTQHSIWHS*VPGPFQTSYAFLGI
Trigger: GATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 90 bp CTCCTTCCTCAGCAGGATGCAGCCTGTTACACTCAGCACAGTATCTaGCACTCTTGGGTTCCCGGTCCATTTCAAACCTCCTATGCTTTC +
Preference number: 5 (lower is better)
Translates to: LLPQQDAACYTQHSI*HSWVPGPFQTSYAF
Trigger: GAAAGCATAGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 90 bp CGTCCACTATCCCGAACATCCTCCTTGATCAGAAAACGGTGCTTCTaGCTCCGGGACAAGGGTTTCTTTCCACTGGACACACGTGAAAAA +
Preference number: 5 (lower is better)
Translates to: RPLSRTSSLIRKRCF*LRDKGFFPLDTREK
Trigger: TTTTTCACGTGTGTCCAGTGGAAAGAAACCCTTGTCCCGGAGGCAGAAGCACCGTTTTCTGATCAAGGAGGATGTTCGGGATAGTGGACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 90 bp CTCATCATCATATTCTTCTTCCAACTCTTCATCTTCCCCCAAGGCTaGAGAGGTGCAATGGTGGCAAAGGCTGCTAGAAGAGCCATCTCC +
Preference number: 5 (lower is better)
Translates to: LIIIFFFQLFIFPQG*RGAMVAKAARRAIS
Trigger: GGAGATGGCTCTTCTAGCAGCCTTTGCCACCATTGCACCTCTCCAGCCTTGGGGGAAGATGAAGAGTTGGAAGAAGAATATGATGATGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS TCA 90 bp GCTTTCCTTGGCATCTGCTGCACATCATCGTGTTCATTGCCTCCTTaGGGTCATCTTGTAGTTTCGACAGAAACTCATTCACTGACCGGC +
Preference number: 5 (lower is better)
Translates to: AFLGICCTSSCSLPP*GHLVVSTETHSLTG
Trigger: GCCGGTCAGTGAATGAGTTTCTGTCGAAACTACAAGATGACCTCAAGGAGGCAATGAACACGATGATGTGCAGCAGATGCCAAGGAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS-3UTR CAA 90 bp AGGCAGGAGAATCACTGCAATCTGGAGTCCAGCCTGGTCTACACAGTAAGACTCGTGTTCATTGCCTCCTaGAGGTCATCTTGTAGTTTC +
Preference number: 5 (lower is better)
Translates to: RQENHCNLESSLVYTVRLVFIAS*RSSCSF
Trigger: GAAACTACAAGATGACCTCAAGGAGGCAATGAACAC...GAGTCTTACTGTGTAGACCAGGCTGGACTCCAGATTGCAGTGATTCTCCTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS TCA 90 bp TTCTTTAGTTCAGTGTCGGATGCTGTAGCTTCAACCCCCAGCACATaGAAAGGGTTTAGTTCATCTTCAGGAACCCCAGCCATGGTCAAG +
Preference number: 5 (lower is better)
Translates to: FFSSVSDAVASTPST*KGFSSSSGTPAMVK
Trigger: CTTGACCATGGCTGGGGTTCCTGAAGATGAACTAAACCCTTTTCATGTGCTGGGGGTTGAAGCTACAGCATCCGACACTGAACTAAAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS-3UTR CAA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGTTGGAGGACCATGGCTaGGATCTGACCAGTGGGCTG +
Preference number: 5 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWLEDHG*DLTSGL
Trigger: CAGCCCACTGGTCAGATCCAAGCCATGGTCCTCCAA...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTGCTGCCCGCAAAATTTaGAAGGCCTCCTCAGCCCGG +
Preference number: 5 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVAARKI*KASSAR
Trigger: CCGGGCTGAGGAGGCCTTCAAAATTTTGCGGGCAGC...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGTTCCGCCTCTCTGGGTaGCTGACAATGTCCCAAGCT +
Preference number: 5 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWFRLSG*LTMSQA
Trigger: AGCTTGGGACATTGTCAGCAACCCAGAGAGGCGGAA...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp AAACTGACTTGGAGAAAGGAAGCAAAAAGGGCTCCAAAAGTCATATATGCTGAAGCAAAGAAGTTCCCATaGGACATCGGCCCCGGAGGT +
Preference number: 5 (lower is better)
Translates to: KLTWRKEAKRAPKVIYAEAKKFP*DIGPGG
Trigger: ACCTCCGGGGCCGATGTCCAATGGGAACTTCTTTGC...TTCAGCATATATGACTTTTGGAGCCCTTTTTGCTTCCTTTCTCCAAGTCAGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026410.2
CDS-3UTR CAA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTGCAAAGAAGTTCCCATaGGACATCGGCCCCGGAGGT +
Preference number: 5 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVAKKFP*DIGPGG
Trigger: ACCTCCGGGGCCGATGTCCAATGGGAACTTCTTTGC...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS TCA 90 bp GTGCTTCTGCCTCCGGGACAAGGGTTTCTTTCCACTGGACACACGTaGAAAATCACTGGGAAATTTAAGAGGTTCCTCATCATCATATTC +
Preference number: 5 (lower is better)
Translates to: VLLPPGQGFLSTGHT*KITGKFKRFLIIIF
Trigger: GAATATGATGATGAGGAACCTCTTAAATTTCCCAGTGATTTTTCACGTGTGTCCAGTGGAAAGAAACCCTTGTCCCGGAGGCAGAAGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS-3UTR CAA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCGGTTTGGCTTCTCCCTaGGGTACTGAACTGTTGGGC +
Preference number: 5 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTGLASP*GTELLG
Trigger: GCCCAACAGTTCAGTACCCAAGGGAGAAGCCAAACC...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp ACCTCCTATTTCTTTGGTATTGTCAGAAAACAAGATTCAGTTCCTGGGTGTTGGTTCCGCCGTTTAGGTTaGGCTTCTCCCTTGGGTACT +
Preference number: 5 (lower is better)
Translates to: TSYFFGIVRKQDSVPGCWFRRLG*ASPLGT
Trigger: AGTACCCAAGGGAGAAGCCAAACCTAAACGGCGGAA...CCAACACCCAGGAACTGAATCTTGTTTTCTGACAATACCAAAGAAATAGGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp CCATGGGGTTCGTCTCTTTGGAATCAACAAATACTAAAAGATGGTTTGCTAGTTCAGTATCTGGCACTCTaGGGTTCCCGGTCCATTTCA +
Preference number: 5 (lower is better)
Translates to: PWGSSLWNQQILKDGLLVQYLAL*GSRSIS
Trigger: TGAAATGGACCGGGAACCCAAGAGTGCCAGATACTG...AACTAGCAAACCATCTTTTAGTATTTGTTGATTCCAAAGAGACGAACCCCATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCCAGTCTCATTCTCTCTaGAGAGTTCCTGGTCCACTC +
Preference number: 5 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTQSHSL*RVPGPL
Trigger: GAGTGGACCAGGAACTCTCAAGAGAGAATGAGACTG...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCCTAGCTACAGGTGCATaGCCCTGTTTCTTAGTCCTC +
Preference number: 5 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTLATGA*PCFLVL
Trigger: GAGGACTAAGAAACAGGGCAATGCACCTGTAGCTAG...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCCCTCCTATGCTTTCCTaGGCATCTGCTGCACATCAT +
Preference number: 5 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTPPMLS*ASAAHH
Trigger: ATGATGTGCAGCAGATGCCAAGGAAAGCATAGGAGG...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS-3UTR CAA 90 bp TTAATTAATTTTGGCCATCCTTGCAACAACAAGCCTGAAGTTAGGTGTCTTACCGTGTTCATTGCCTCCTaGAGGTCATCTTGTAGTTTC +
Preference number: 5 (lower is better)
Translates to: LINFGHPCNNKPEVRCLTVFIAS*RSSCSF
Trigger: GAAACTACAAGATGACCTCAAGGAGGCAATGAACAC...GGTAAGACACCTAACTTCAGGCTTGTTGTTGCAAGGATGGCCAAAATTAATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
CDS CCA 72 bp AGAAATCCTGCAGGTCAGCAGGAGGGGACTCTGGAGTaGCCCTCTGCCGGCCACTGGTGCCGGGTACCCGAG +
Preference number: 6 (lower is better)
Translates to: RNPAGQQEGTLE*PSAGHWCRVPE
Trigger: CTCGGGTACCCGGCACCAGTGGCCGGCAGAGGGCCACTCCAGAGTCCCCTCCTGCTGACCTGCAGGATTTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 72 bp GCTCAAGAAATCCTGCAGGTCAGCAGGAGGGGACTCTaGAGTGGCCCTCTGCCGGCCACTGGTGCCGGGTAC +
Preference number: 6 (lower is better)
Translates to: AQEILQVSRRGL*SGPLPATGAGY
Trigger: GTACCCGGCACCAGTGGCCGGCAGAGGGCCACTCCAGAGTCCCCTCCTGCTGACCTGCAGGATTTCTTGAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 72 bp CAGGAGGGGACTCTGGAGTGGCCCTCTGCCGGCCACTaGTGCCGGGTACCCGAGAACCAAATGAGATGTGGT +
Preference number: 6 (lower is better)
Translates to: QEGTLEWPSAGH*CRVPENQMRCG
Trigger: ACCACATCTCATTTGGTTCTCGGGTACCCGGCACCAGTGGCCGGCAGAGGGCCACTCCAGAGTCCCCTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 72 bp GAGGGGACTCTGGAGTGGCCCTCTGCCGGCCACTGGTaGCGGGTACCCGAGAACCAAATGAGATGTGGTAAG +
Preference number: 6 (lower is better)
Translates to: EGTLEWPSAGHW*RVPENQMRCGK
Trigger: CTTACCACATCTCATTTGGTTCTCGGGTACCCGGCACCAGTGGCCGGCAGAGGGCCACTCCAGAGTCCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 72 bp CAGGGCCAGGGTGAGGTGCGGCAAAGAAGTTCCCATTaGACATCGGCCCCGGAGGTACTTGAAAGATCCGGC +
Preference number: 6 (lower is better)
Translates to: QGQGEVRQRSSH*TSAPEVLERSG
Trigger: GCCGGATCTTTCAAGTACCTCCGGGGCCGATGTCCAATGGGAACTTCTTTGCCGCACCTCACCCTGGCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 72 bp CTTCCGCCTCTCTGGGTTGCTGACAATGTCCCAAGCTaGCCGCAAAATTTTGAAGGCCTCCTCAGCCCGGGG +
Preference number: 6 (lower is better)
Translates to: LPPLWVADNVPS*PQNFEGLLSPG
Trigger: CCCCGGGCTGAGGAGGCCTTCAAAATTTTGCGGGCAGCTTGGGACATTGTCAGCAACCCAGAGAGGCGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 72 bp GGACCCCTTGGAGGACCATGGCTTGGATCTGACCAGTaGGCTGGATTTGGAGGCTGTGTGTACTTAGGGCCG +
Preference number: 6 (lower is better)
Translates to: GPLGGPWLGSDQ*AGFGGCVYLGP
Trigger: CGGCCCTAAGTACACACAGCCTCCAAATCCAGCCCACTGGTCAGATCCAAGCCATGGTCCTCCAAGGGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218001.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS CAA 90 bp AAGGGCCGCCTCACTTTCTTCCGCCGTTTAGGTTTGGCTTCTCCCTaGGGTACTGAACTGTTGGGCCTAGAGGTCGAAGTGGTCCCAGGG +
Preference number: 6 (lower is better)
Translates to: KGRLTFFRRLGLASP*GTELLGLEVEVVPG
Trigger: CCCTGGGACCACTTCGACCTCTAGGCCCAACAGTTCAGTACCCAAGGGAGAAGCCAAACCTAAACGGCGGAAGAAAGTGAGGCGGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 72 bp TGTCTGACTTCTTTTTCGGGCCAGCCGATGACGACCTaGGGCCTTGGGTTCTCTGCGTCCACTATCCCGAAC +
Preference number: 6 (lower is better)
Translates to: CLTSFSGQPMTT*GLGFSASTIPN
Trigger: GTTCGGGATAGTGGACGCAGAGAACCCAAGGCCCCAGGTCGTCATCGGCTGGCCCGAAAAAGAAGTCAGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CAA 90 bp ACTTCCTCTTCAGGCTGGCAGTATCGCCCGCTAGCTACAGGTGCATaGCCCTGTTTCTTAGTCCTCTGTTTGACCCAGGGCAGCTCCTGC +
Preference number: 6 (lower is better)
Translates to: TSSSGWQYRPLATGA*PCFLVLCLTQGSSC
Trigger: GCAGGAGCTGCCCTGGGTCAAACAGAGGACTAAGAAACAGGGCAATGCACCTGTAGCTAGCGGGCGATACTGCCAGCCTGAAGAGGAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CAA 90 bp AGGTGCGGCAAAGAAGTTCCCATTGGACATCGGCCCCGGAGGTACTaGAAAGATCCGGCTCAAGAAATCCTGCAGGTCAGCAGGAGGGGA +
Preference number: 6 (lower is better)
Translates to: RCGKEVPIGHRPRRY*KDPAQEILQVSRRG
Trigger: TCCCCTCCTGCTGACCTGCAGGATTTCTTGAGCCGGATCTTTCAAGTACCTCCGGGGCCGATGTCCAATGGGAACTTCTTTGCCGCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 72 bp TGGTCCTGGACCCCTTGGAGGACCATGGCTTGGATCTaGCCAGTGGGCTGGATTTGGAGGCTGTGTGTACTT +
Preference number: 6 (lower is better)
Translates to: WSWTPWRTMAWI*PVGWIWRLCVL
Trigger: AAGTACACACAGCCTCCAAATCCAGCCCACTGGTCAGATCCAAGCCATGGTCCTCCAAGGGGTCCAGGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218001.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS TCA 72 bp CTTCCGCCGTTTAGGTTTGGCTTCTCCCTTGGGTACTaGACTGTTGGGCCTAGAGGTCGAAGTGGTCCCAGG +
Preference number: 6 (lower is better)
Translates to: LPPFRFGFSLGY*TVGPRGRSGPR
Trigger: CCTGGGACCACTTCGACCTCTAGGCCCAACAGTTCAGTACCCAAGGGAGAAGCCAAACCTAAACGGCGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CAA 72 bp TCAGGCTGGCAGTATCGCCCGCTAGCTACAGGTGCATaGCCCTGTTTCTTAGTCCTCTGTTTGACCCAGGGC +
Preference number: 6 (lower is better)
Translates to: SGWQYRPLATGA*PCFLVLCLTQG
Trigger: GCCCTGGGTCAAACAGAGGACTAAGAAACAGGGCAATGCACCTGTAGCTAGCGGGCGATACTGCCAGCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 72 bp AAAGTATTTCGGGGTCCACAGAGGATCCTGATGTACTaGGGGAGGTACCACCACTGCGGTGGGCTCCACACA +
Preference number: 6 (lower is better)
Translates to: KVFRGPQRILMY*GRYHHCGGLHT
Trigger: TGTGTGGAGCCCACCGCAGTGGTGGTACCTCCCTCAGTACATCAGGATCCTCTGTGGACCCCGAAATACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218001.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS TCA 72 bp TGGGTTCTCTGCGTCCACTATCCCGAACATCCTCCTTaGTCAGAAAACGGTGCTTCTGCCTCCGGGACAAGG +
Preference number: 6 (lower is better)
Translates to: WVLCVHYPEHPP*SENGASASGTR
Trigger: CCTTGTCCCGGAGGCAGAAGCACCGTTTTCTGATCAAGGAGGATGTTCGGGATAGTGGACGCAGAGAACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 72 bp TCTTCATCTTCCCCCAAGGCTGGAGAGGTGCAATGGTaGCAAAGGCTGCTAGAAGAGCCATCTCCTTCCTCG +
Preference number: 6 (lower is better)
Translates to: SSSSPKAGEVQW*QRLLEEPSPSS
Trigger: CGAGGAAGGAGATGGCTCTTCTAGCAGCCTTTGCCACCATTGCACCTCTCCAGCCTTGGGGGAAGATGAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS TCA 72 bp AGTTCAATCAGCCACCAGAAGCCTGCTTGTCCAAGCTaGCATAGTTCCTCTACTCCCCACAGTCCCAGGCCT +
Preference number: 6 (lower is better)
Translates to: SSISHQKPACPS*HSSSTPHSPRP
Trigger: AGGCCTGGGACTGTGGGGAGTAGAGGAACTATGTCAGCTTGGACAAGCAGGCTTCTGGTGGCTGATTGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 72 bp AGCTCCTGCCAGCCCCACTGTATTAACCTTACCAGCTaGTGCCATGGCCTGCTATCTTTCAGCAGAGTCAAG +
Preference number: 6 (lower is better)
Translates to: SSCQPHCINLTS*CHGLLSFSRVK
Trigger: CTTGACTCTGCTGAAAGATAGCAGGCCATGGCAGCAGCTGGTAAGGTTAATACAGTGGGGCTGGCAGGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 72 bp TGTTTCTTAGTCCTCTGTTTGACCCAGGGCAGCTCCTaGCAGCCCCACTGTATTAACCTTACCAGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: CFLVLCLTQGSS*QPHCINLTSCC
Trigger: GCAGCAGCTGGTAAGGTTAATACAGTGGGGCTGGCAGGAGCTGCCCTGGGTCAAACAGAGGACTAAGAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 72 bp AACTCTTCATCTTCCCCCAAGGCTGGAGAGGTGCAATaGTGGCAAAGGCTGCTAGAAGAGCCATCTCCTTCC +
Preference number: 6 (lower is better)
Translates to: NSSSSPKAGEVQ*WQRLLEEPSPS
Trigger: GGAAGGAGATGGCTCTTCTAGCAGCCTTTGCCACCATTGCACCTCTCCAGCCTTGGGGGAAGATGAAGAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS CCA 72 bp CAGCAGGATGCAGCCTGTTACACTCAGCACAGTATCTaGCACTCTTGGGTTCCCGGTCCATTTCAAACCTCC +
Preference number: 6 (lower is better)
Translates to: QQDAACYTQHSI*HSWVPGPFQTS
Trigger: GGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 72 bp CCAGGTCACTGCCTTTCAGCTTCCTGCATGCGTAAATaGGATGGCCACAGGTTTCCACATACTCTCCCACCA +
Preference number: 6 (lower is better)
Translates to: PGHCLSASCMRK*DGHRFPHTLPP
Trigger: TGGTGGGAGAGTATGTGGAAACCTGTGGCCATCTCATTTACGCATGCAGGAAGCTGAAAGGCAGTGACCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 72 bp AAGAAGTTCCCATTGGACATCGGCCCCGGAGGTACTTaGAAGATCCGGCTCAAGAAATCCTGCAGGTCAGCA +
Preference number: 6 (lower is better)
Translates to: KKFPLDIGPGGT*KIRLKKSCRSA
Trigger: TGCTGACCTGCAGGATTTCTTGAGCCGGATCTTTCAAGTACCTCCGGGGCCGATGTCCAATGGGAACTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 72 bp TCCCGAACATCCTCCTTGATCAGAAAACGGTGCTTCTaGCTCCGGGACAAGGGTTTCTTTCCACTGGACACA +
Preference number: 6 (lower is better)
Translates to: SRTSSLIRKRCF*LRDKGFFPLDT
Trigger: TGTGTCCAGTGGAAAGAAACCCTTGTCCCGGAGGCAGAAGCACCGTTTTCTGATCAAGGAGGATGTTCGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 72 bp CCACTATCCCGAACATCCTCCTTGATCAGAAAACGGTaGTTCTGCCTCCGGGACAAGGGTTTCTTTCCACTG +
Preference number: 6 (lower is better)
Translates to: PLSRTSSLIRKR*FCLRDKGFFPL
Trigger: CAGTGGAAAGAAACCCTTGTCCCGGAGGCAGAAGCACCGTTTTCTGATCAAGGAGGATGTTCGGGATAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 72 bp TCCTGGTACCCAGTCTCATTCTCTCTTGAGAGTTCCTaGTCCACTCCTGACTCTTCTGAACCTGTCTCGCTC +
Preference number: 6 (lower is better)
Translates to: SWYPVSFSLESS*STPDSSEPVSL
Trigger: GAGCGAGACAGGTTCAGAAGAGTCAGGAGTGGACCAGGAACTCTCAAGAGAGAATGAGACTGGGTACCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218001.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS CCA 72 bp GAAAAGGGTTTAGTTCATCTTCAGGAACCCCAGCCATaGTCAAGAGTCGGGTCACTTCCTCTTCAGGCTGGC +
Preference number: 6 (lower is better)
Translates to: EKGLVHLQEPQP*SRVGSLPLQAG
Trigger: GCCAGCCTGAAGAGGAAGTGACCCGACTCTTGACCATGGCTGGGGTTCCTGAAGATGAACTAAACCCTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CAA 72 bp GACTCCCATCCTCCTGGTACCCAGTCTCATTCTCTCTaGAGAGTTCCTGGTCCACTCCTGACTCTTCTGAAC +
Preference number: 6 (lower is better)
Translates to: DSHPPGTQSHSL*RVPGPLLTLLN
Trigger: GTTCAGAAGAGTCAGGAGTGGACCAGGAACTCTCAAGAGAGAATGAGACTGGGTACCAGGAGGATGGGAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218001.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS CAA 72 bp AAAGAAGTTCCCATTGGACATCGGCCCCGGAGGTACTaGAAAGATCCGGCTCAAGAAATCCTGCAGGTCAGC +
Preference number: 6 (lower is better)
Translates to: KEVPIGHRPRRY*KDPAQEILQVS
Trigger: GCTGACCTGCAGGATTTCTTGAGCCGGATCTTTCAAGTACCTCCGGGGCCGATGTCCAATGGGAACTTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CAA 72 bp CTCACTTTCTTCCGCCGTTTAGGTTTGGCTTCTCCCTaGGGTACTGAACTGTTGGGCCTAGAGGTCGAAGTG +
Preference number: 6 (lower is better)
Translates to: LTFFRRLGLASP*GTELLGLEVEV
Trigger: CACTTCGACCTCTAGGCCCAACAGTTCAGTACCCAAGGGAGAAGCCAAACCTAAACGGCGGAAGAAAGTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CAA 90 bp GAAAAGAAGGACTCCCATCCTCCTGGTACCCAGTCTCATTCTCTCTaGAGAGTTCCTGGTCCACTCCTGACTCTTCTGAACCTGTCTCGC +
Preference number: 6 (lower is better)
Translates to: EKKDSHPPGTQSHSL*RVPGPLLTLLNLSR
Trigger: GCGAGACAGGTTCAGAAGAGTCAGGAGTGGACCAGGAACTCTCAAGAGAGAATGAGACTGGGTACCAGGAGGATGGGAGTCCTTCTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000218001.2
ENSMUST00000218511.2
ENSMUST00000219508.2
CDS CAA 90 bp TCAGCAGGATGCAGCCTGTTACACTCAGCACAGTATCTGGCACTCTaGGGTTCCCGGTCCATTTCAAACCTCCTATGCTTTCCTTGGCAT +
Preference number: 6 (lower is better)
Translates to: SAGCSLLHSAQYLAL*GSRSISNLLCFPWH
Trigger: ATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 72 bp TCAGTGTCGGATGCTGTAGCTTCAACCCCCAGCACATaGAAAGGGTTTAGTTCATCTTCAGGAACCCCAGCC +
Preference number: 6 (lower is better)
Translates to: SVSDAVASTPST*KGFSSSSGTPA
Trigger: GGCTGGGGTTCCTGAAGATGAACTAAACCCTTTTCATGTGCTGGGGGTTGAAGCTACAGCATCCGACACTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 72 bp GCTATCTTTCAGCAGAGTCAAGCAATGATGCAAGGCTaGAGAACCCAGCCAAGAGAACAGCCAAGCGGTCTT +
Preference number: 6 (lower is better)
Translates to: AIFQQSQAMMQG*RTQPREQPSGL
Trigger: AAGACCGCTTGGCTGTTCTCTTGGCTGGGTTCTCCAGCCTTGCATCATTGCTTGACTCTGCTGAAAGATAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CCA 72 bp GCAGCCTGTTACACTCAGCACAGTATCTGGCACTCTTaGGTTCCCGGTCCATTTCAAACCTCCTATGCTTTC +
Preference number: 6 (lower is better)
Translates to: AACYTQHSIWHS*VPGPFQTSYAF
Trigger: GAAAGCATAGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS GCA 72 bp CCCACTGTATTAACCTTACCAGCTGCTGCCATGGCCTaGTATCTTTCAGCAGAGTCAAGCAATGATGCAAGG +
Preference number: 6 (lower is better)
Translates to: PTVLTLPAAAMA*YLSAESSNDAR
Trigger: CCTTGCATCATTGCTTGACTCTGCTGAAAGATAGCAGGCCATGGCAGCAGCTGGTAAGGTTAATACAGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CAA 72 bp TGCAGCCTGTTACACTCAGCACAGTATCTGGCACTCTaGGGTTCCCGGTCCATTTCAAACCTCCTATGCTTT +
Preference number: 6 (lower is better)
Translates to: CSLLHSAQYLAL*GSRSISNLLCF
Trigger: AAAGCATAGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CAA 90 bp TGCTTTCCTTGGCATCTGCTGCACATCATCGTGTTCATTGCCTCCTaGAGGTCATCTTGTAGTTTCGACAGAAACTCATTCACTGACCGG +
Preference number: 6 (lower is better)
Translates to: CFPWHLLHIIVFIAS*RSSCSFDRNSFTDR
Trigger: CCGGTCAGTGAATGAGTTTCTGTCGAAACTACAAGATGACCTCAAGGAGGCAATGAACACGATGATGTGCAGCAGATGCCAAGGAAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 72 bp CCTCCGGGACAAGGGTTTCTTTCCACTGGACACACGTaGAAAATCACTGGGAAATTTAAGAGGTTCCTCATC +
Preference number: 6 (lower is better)
Translates to: PPGQGFLSTGHT*KITGKFKRFLI
Trigger: GATGAGGAACCTCTTAAATTTCCCAGTGATTTTTCACGTGTGTCCAGTGGAAAGAAACCCTTGTCCCGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS TCA 72 bp GGCATCTGCTGCACATCATCGTGTTCATTGCCTCCTTaGGGTCATCTTGTAGTTTCGACAGAAACTCATTCA +
Preference number: 6 (lower is better)
Translates to: GICCTSSCSLPP*GHLVVSTETHS
Trigger: TGAATGAGTTTCTGTCGAAACTACAAGATGACCTCAAGGAGGCAATGAACACGATGATGTGCAGCAGATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2
CDS CAA 72 bp TGGCATCTGCTGCACATCATCGTGTTCATTGCCTCCTaGAGGTCATCTTGTAGTTTCGACAGAAACTCATTC +
Preference number: 6 (lower is better)
Translates to: WHLLHIIVFIAS*RSSCSFDRNSF
Trigger: GAATGAGTTTCTGTCGAAACTACAAGATGACCTCAAGGAGGCAATGAACACGATGATGTGCAGCAGATGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026410.2
ENSMUST00000217745.2
ENSMUST00000219508.2