Pregenerated sensors for DNAJC12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036764Ensembl transcript IDs: ENSMUST00000043317.7, ENSMUST00000129625.8
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTGTGCGCTCTGCTGTCCAGTGGCTATGTAGCCACAGCTGGCCTTaGGCCTCCAGTCCTCTGCTTCCAAGTCCCACTGCTGGGATTACA | + |
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Preference number: 1 (lower is better) Translates to: PVRSAVQWLCSHSWP*ASSPLLPSPTAGIT Trigger: TGTAATCCCAGCAGTGGGACTTGGAAGCAGAGGACTGGAGGCTCAAGGCCAGCTGTGGCTACATAGCCACTGGACAGCAGAGCGCACAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR GCA 90 bp | TCCAGTGGCTATGTAGCCACAGCTGGCCTTGAGCCTCCAGTCCTCTaGTTCCAAGTCCCACTGCTGGGATTACAGGAGTGTGTCACCACA | + |
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Preference number: 1 (lower is better) Translates to: SSGYVATAGLEPPVL*FQVPLLGLQECVTT Trigger: TGTGGTGACACACTCCTGTAATCCCAGCAGTGGGACTTGGAAGCAGAGGACTGGAGGCTCAAGGCCAGCTGTGGCTACATAGCCACTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR GCA 90 bp | CCACAGCTGGCCTTGAGCCTCCAGTCCTCTGCTTCCAAGTCCCACTaGTGGGATTACAGGAGTGTGTCACCACATCTGTCTAGGAAATAT | + |
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Preference number: 1 (lower is better) Translates to: PQLALSLQSSASKSH*WDYRSVSPHLSRKY Trigger: ATATTTCCTAGACAGATGTGGTGACACACTCCTGTAATCCCAGCAGTGGGACTTGGAAGCAGAGGACTGGAGGCTCAAGGCCAGCTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CCA 90 bp | ATATTCTGCAGAGGCAACAGGCTACAGTGTTTAACCAGCTGGTGCTaGACCCTCAGATGTCCCGAGGGAAGCAAATGTCTGAGAGCCCAT | + |
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Preference number: 1 (lower is better) Translates to: IFCRGNRLQCLTSWC*TLRCPEGSKCLRAH Trigger: ATGGGCTCTCAGACATTTGCTTCCCTCGGGACATCTGAGGGTCCAGCACCAGCTGGTTAAACACTGTAGCCTGTTGCCTCTGCAGAATAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CCA 90 bp | CAGCTGGCCTTGAGCCTCCAGTCCTCTGCTTCCAAGTCCCACTGCTaGGATTACAGGAGTGTGTCACCACATCTGTCTAGGAAATATATT | + |
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Preference number: 1 (lower is better) Translates to: QLALSLQSSASKSHC*DYRSVSPHLSRKYI Trigger: AATATATTTCCTAGACAGATGTGGTGACACACTCCTGTAATCCCAGCAGTGGGACTTGGAAGCAGAGGACTGGAGGCTCAAGGCCAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR GCA 90 bp | GACCATCCTTTGAATTGGACTTGGATCTTCACAAATGGTGAGGCATaGTTGAGCCACCAGAGGTGTTTTGTTACAACAGCTAGAGCAGGG | + |
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Preference number: 1 (lower is better) Translates to: DHPLNWTWIFTNGEA*LSHQRCFVTTARAG Trigger: CCCTGCTCTAGCTGTTGTAACAAAACACCTCTGGTGGCTCAAGCATGCCTCACCATTTGTGAAGATCCAAGTCCAATTCAAAGGATGGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR TCA 90 bp | CAACCATTTTTCTCACTTAAACAACATGTAGGAGGTAAGAATCAATaGTACAGAGCATACGGAAGGTCCTGGGTTCAATCCCCAGTAAAA | + |
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Preference number: 1 (lower is better) Translates to: QPFFSLKQHVGGKNQ*YRAYGRSWVQSPVK Trigger: TTTTACTGGGGATTGAACCCAGGACCTTCCGTATGCTCTGTATCATTGATTCTTACCTCCTACATGTTGTTTAAGTGAGAAAAATGGTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CCA 90 bp | ATATTTCCTAAATTAGTGAGTTTATCTGTCTGTTTATTTTGGGTGTaGTTATGTTCGTGCCACACCAAATGTGTGGAGGTCAGAGGACAA | + |
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Preference number: 1 (lower is better) Translates to: IFPKLVSLSVCLFWV*LCSCHTKCVEVRGQ Trigger: TTGTCCTCTGACCTCCACACATTTGGTGTGGCACGAACATAACCACACCCAAAATAAACAGACAGATAAACTCACTAATTTAGGAAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CCA 90 bp | GGAAATATATTTCCTAAATTAGTGAGTTTATCTGTCTGTTTATTTTaGGTGTGGTTATGTTCGTGCCACACCAAATGTGTGGAGGTCAGA | + |
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Preference number: 1 (lower is better) Translates to: GNIFPKLVSLSVCLF*VWLCSCHTKCVEVR Trigger: TCTGACCTCCACACATTTGGTGTGGCACGAACATAACCACACCCAAAATAAACAGACAGATAAACTCACTAATTTAGGAAATATATTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR TCA 90 bp | ATGAGGGTGATCCCCCACCCATCCACCCACTCTCGCCTTCCAGCCAAGGCTGACAGCCACAGCTGGCCTTaGGCCTCCAGTCCTCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: MRVIPHPSTHSRLPAKADSHSWP*ASSPLL Trigger: AAGCAGAGGACTGGAGGCTCAAGGCCAGCTGTGGCT...GTCAGCCTTGGCTGGAAGGCGAGAGTGGGTGGATGGGTGGGGGATCACCCTCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CCA 90 bp | ATGAGGGTGATCCCCCACCCATCCACCCACTCTCGCCTTCCAGCCAAGGCTGACTCCAAGTCCCACTGCTaGGATTACAGGAGTGTGTCA | + |
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Preference number: 2 (lower is better) Translates to: MRVIPHPSTHSRLPAKADSKSHC*DYRSVS Trigger: TGACACACTCCTGTAATCCCAGCAGTGGGACTTGGA...GTCAGCCTTGGCTGGAAGGCGAGAGTGGGTGGATGGGTGGGGGATCACCCTCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR TCA 90 bp | ATGAGGGTGATCCCCCACCCATCCACCCACTCTCGCCTTCCAGCCAAGGCTGACACTGATGTCTTCCTGTaGAGAGGTAGATACCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: MRVIPHPSTHSRLPAKADTDVFL*RGRYQG Trigger: TCCCTGGTATCTACCTCTTCACAGGAAGACATCAGT...GTCAGCCTTGGCTGGAAGGCGAGAGTGGGTGGATGGGTGGGGGATCACCCTCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR GCA 90 bp | GACCCATCAGGAGCAGCTGTCAAGTGCAGCGATTTCCTAAGCAACAGCAGTGGGGCTTCCAAGTCCCACTaGTGGGATTACAGGAGTGTG | + |
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Preference number: 2 (lower is better) Translates to: DPSGAAVKCSDFLSNSSGASKSH*WDYRSV Trigger: CACACTCCTGTAATCCCAGCAGTGGGACTTGGAAGC...CCCACTGCTGTTGCTTAGGAAATCGCTGCACTTGACAGCTGCTCCTGATGGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CCA 90 bp | TGCCTCCATGAGGGTGATCCCCCACCCATCCACCCACTCTCGCCTTCCAGCCAAAAAGACATTTTTGTATaGGTAGGGATCACAAGACAC | + |
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Preference number: 2 (lower is better) Translates to: CLHEGDPPPIHPLSPSSQKDIFV*VGITRH Trigger: GTGTCTTGTGATCCCTACCCATACAAAAATGTCTTT...TTGGCTGGAAGGCGAGAGTGGGTGGATGGGTGGGGGATCACCCTCATGGAGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CCA 90 bp | GACCCATCAGGAGCAGCTGTCAAGTGCAGCGATTTCCTAAGCAACAGCAGTGGGCCTTTGAATTGGACTTaGATCTTCACAAATGGTGAG | + |
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Preference number: 2 (lower is better) Translates to: DPSGAAVKCSDFLSNSSGPLNWT*IFTNGE Trigger: CTCACCATTTGTGAAGATCCAAGTCCAATTCAAAGG...CCCACTGCTGTTGCTTAGGAAATCGCTGCACTTGACAGCTGCTCCTGATGGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR TCA 90 bp | TTTCTTTATTTATATTTCAATGTTATCCCCTTTCCAGGTCTCCCCTCTGGAGACCCTTCCAGCCAAGGCTaGCCCATCAGGAGCAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: FLYLYFNVIPFPGLPSGDPSSQG*PIRSSC Trigger: ACAGCTGCTCCTGATGGGTCAGCCTTGGCTGGAAGG...GTCTCCAGAGGGGAGACCTGGAAAGGGGATAACATTGAAATATAAATAAAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CCA 90 bp | AGATGTCCCGAGGGAAGCAAATGTCTGAGAGCCCATCACATCCTATGTGTGTGTTTGGTTTTCTTGAATTaGAGTCTCCTGTGCGCTCTG | + |
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Preference number: 2 (lower is better) Translates to: RCPEGSKCLRAHHILCVCLVFLN*SLLCAL Trigger: CAGAGCGCACAGGAGACTCCAATTCAAGAAAACCAA...ACACACACATAGGATGTGATGGGCTCTCAGACATTTGCTTCCCTCGGGACATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR TCA 90 bp | AAATGTGCTGACCATCCTTTGAATTGGACTTGGATCTTCACAAATGGTGAGGCAACAACCTTCAGGAGTTaGTCTTTCCACCATGTGGCC | + |
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Preference number: 2 (lower is better) Translates to: KCADHPLNWTWIFTNGEATTFRS*SFHHVA Trigger: GGCCACATGGTGGAAAGATCAACTCCTGAAGGTTGT...TGCCTCACCATTTGTGAAGATCCAAGTCCAATTCAAAGGATGGTCAGCACATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CCA 90 bp | AGATGTCCCGAGGGAAGCAAATGTCTGAGAGCCCATCACATCCTATGTGTGTGTTCTGTCTGTTTATTTTaGGTGTGGTTATGTTCGTGC | + |
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Preference number: 2 (lower is better) Translates to: RCPEGSKCLRAHHILCVCSVCLF*VWLCSC Trigger: GCACGAACATAACCACACCCAAAATAAACAGACAGA...ACACACACATAGGATGTGATGGGCTCTCAGACATTTGCTTCCCTCGGGACATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR TCA 90 bp | GAAATAAGTTATAGTGAAGTTGTGAGAACTACGGACCCTGATCTGGGATTACTGTGGTTTTGGTTTTCTTaGATTGGAGTCTCCTGTGCG | + |
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Preference number: 2 (lower is better) Translates to: EISYSEVVRTTDPDLGLLWFWFS*IGVSCA Trigger: CGCACAGGAGACTCCAATTCAAGAAAACCAAAACCA...CAGTAATCCCAGATCAGGGTCCGTAGTTCTCACAACTTCACTATAACTTATTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CAA 90 bp | ATGAGGGTGATCCCCCACCCATCCACCCACTCTCGCCTTCCAGCCAAGGCTGACGCAGAGATGAAGGCCTaGCCCTCCCTCCTTCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: MRVIPHPSTHSRLPAKADAEMKA*PSLLPR Trigger: TCTGGGAAGGAGGGAGGGCAAGGCCTTCATCTCTGC...GTCAGCCTTGGCTGGAAGGCGAGAGTGGGTGGATGGGTGGGGGATCACCCTCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR TCA 72 bp | CCACCCATCCACCCACTCTCGCCTTCCAGCCAAGGCTaGCCCATCAGGAGCAGCTGTCAAGTGCAGCGATTT | + |
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Preference number: 3 (lower is better) Translates to: PPIHPLSPSSQG*PIRSSCQVQRF Trigger: AAATCGCTGCACTTGACAGCTGCTCCTGATGGGTCAGCCTTGGCTGGAAGGCGAGAGTGGGTGGATGGGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CAA 90 bp | ATGAGGGTGATCCCCCACCCATCCACCCACTCTCGCCTTCCAGCCAAGGCTGACAATGGTGAGGCATGCTaGAGCCACCAGAGGTGTTTT | + |
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Preference number: 3 (lower is better) Translates to: MRVIPHPSTHSRLPAKADNGEAC*SHQRCF Trigger: AAAACACCTCTGGTGGCTCAAGCATGCCTCACCATT...GTCAGCCTTGGCTGGAAGGCGAGAGTGGGTGGATGGGTGGGGGATCACCCTCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR TCA 72 bp | TCTGCTGTCCAGTGGCTATGTAGCCACAGCTGGCCTTaGGCCTCCAGTCCTCTGCTTCCAAGTCCCACTGCT | + |
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Preference number: 3 (lower is better) Translates to: SAVQWLCSHSWP*ASSPLLPSPTA Trigger: AGCAGTGGGACTTGGAAGCAGAGGACTGGAGGCTCAAGGCCAGCTGTGGCTACATAGCCACTGGACAGCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR GCA 72 bp | TATGTAGCCACAGCTGGCCTTGAGCCTCCAGTCCTCTaGTTCCAAGTCCCACTGCTGGGATTACAGGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: YVATAGLEPPVL*FQVPLLGLQEC Trigger: ACACTCCTGTAATCCCAGCAGTGGGACTTGGAAGCAGAGGACTGGAGGCTCAAGGCCAGCTGTGGCTACATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR GCA 72 bp | CCAGCCAAGGCTGACCCATCAGGAGCAGCTGTCAAGTaGAGCGATTTCCTAAGCAACAGCAGTGGGTCAACA | + |
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Preference number: 3 (lower is better) Translates to: PAKADPSGAAVK*SDFLSNSSGST Trigger: TGTTGACCCACTGCTGTTGCTTAGGAAATCGCTGCACTTGACAGCTGCTCCTGATGGGTCAGCCTTGGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR TCA 72 bp | GCTGGACCCTCAGATGTCCCGAGGGAAGCAAATGTCTaGGAGCCCATCACATCCTATGTGTGTGTGTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: AGPSDVPREANV*EPITSYVCVCV Trigger: CACACACACACACACATAGGATGTGATGGGCTCTCAGACATTTGCTTCCCTCGGGACATCTGAGGGTCCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CCA 72 bp | AGAGGCAACAGGCTACAGTGTTTAACCAGCTGGTGCTaGACCCTCAGATGTCCCGAGGGAAGCAAATGTCTG | + |
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Preference number: 3 (lower is better) Translates to: RGNRLQCLTSWC*TLRCPEGSKCL Trigger: CAGACATTTGCTTCCCTCGGGACATCTGAGGGTCCAGCACCAGCTGGTTAAACACTGTAGCCTGTTGCCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CCA 72 bp | ATATTTCAATGTTATCCCCTTTCCAGGTCTCCCCTCTaGAGACCCACCTCCTCCCACTGCCTCCATGAGGGT | + |
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Preference number: 3 (lower is better) Translates to: IFQCYPLSRSPL*RPTSSHCLHEG Trigger: ACCCTCATGGAGGCAGTGGGAGGAGGTGGGTCTCCAGAGGGGAGACCTGGAAAGGGGATAACATTGAAATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR TCA 72 bp | CAAATGTGTGGAGGTCAGAGGACAACCTTCAGGAGTTaGTCTTTCCACCATGTGGCCCTGGGGCTAGAACTC | + |
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Preference number: 3 (lower is better) Translates to: QMCGGQRTTFRS*SFHHVALGLEL Trigger: GAGTTCTAGCCCCAGGGCCACATGGTGGAAAGATCAACTCCTGAAGGTTGTCCTCTGACCTCCACACATTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CAA 90 bp | TCCAGTGGCTATGTAGCCACAGCTGGCCTTGAGCCTCCAGTCCTCTGCTTCCAAATCTGTCTGTTTATTTaGGGTGTGGTTATGTTCGTG | + |
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Preference number: 3 (lower is better) Translates to: SSGYVATAGLEPPVLCFQICLFI*GVVMFV Trigger: CACGAACATAACCACACCCAAAATAAACAGACAGAT...TTGGAAGCAGAGGACTGGAGGCTCAAGGCCAGCTGTGGCTACATAGCCACTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR GCA 72 bp | GCTTTGGTTTTGGTTTTCTTGAATTGGAGTCTCCTGTaGGCTCTGCTGTCCAGTGGCTATGTAGCCACAGCT | + |
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Preference number: 3 (lower is better) Translates to: ALVLVFLNWSLL*ALLSSGYVATA Trigger: AGCTGTGGCTACATAGCCACTGGACAGCAGAGCGCACAGGAGACTCCAATTCAAGAAAACCAAAACCAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR TCA 72 bp | GGCCACCTGAATACACGGGCAACCTCAGAAATGTGCTaGCCATCCTTTGAATTGGACTTGGATCTTCACAAA | + |
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Preference number: 3 (lower is better) Translates to: GHLNTRATSEMC*PSFELDLDLHK Trigger: TTTGTGAAGATCCAAGTCCAATTCAAAGGATGGTCAGCACATTTCTGAGGTTGCCCGTGTATTCAGGTGGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CCA 72 bp | TTTGGGTGTGGTTATGTTCGTGCCACACCAAATGTGTaGAGGTCAGAGGACAACCTTCAGGAGTTGATCTTT | + |
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Preference number: 3 (lower is better) Translates to: FGCGYVRATPNV*RSEDNLQELIF Trigger: AAAGATCAACTCCTGAAGGTTGTCCTCTGACCTCCACACATTTGGTGTGGCACGAACATAACCACACCCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CCA 72 bp | CCTCAGAAATGTGCTGACCATCCTTTGAATTGGACTTaGATCTTCACAAATGGTGAGGCATGCTTGAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: PQKCADHPLNWT*IFTNGEACLSH Trigger: GTGGCTCAAGCATGCCTCACCATTTGTGAAGATCCAAGTCCAATTCAAAGGATGGTCAGCACATTTCTGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CCA 72 bp | GGGCAACCTCAGAAATGTGCTGACCATCCTTTGAATTaGACTTGGATCTTCACAAATGGTGAGGCATGCTTG | + |
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Preference number: 3 (lower is better) Translates to: GQPQKCADHPLN*TWIFTNGEACL Trigger: CAAGCATGCCTCACCATTTGTGAAGATCCAAGTCCAATTCAAAGGATGGTCAGCACATTTCTGAGGTTGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CAA 90 bp | GAAATAAGTTATAGTGAAGTTGTGAGAACTACGGACCCTGATCTGGGATTACTGGGGAGGATGGGGGACTaGACCATTCTGAGTAACTCA | + |
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Preference number: 3 (lower is better) Translates to: EISYSEVVRTTDPDLGLLGRMGD*TILSNS Trigger: TGAGTTACTCAGAATGGTCAAGTCCCCCATCCTCCC...CAGTAATCCCAGATCAGGGTCCGTAGTTCTCACAACTTCACTATAACTTATTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR TCA 72 bp | ATTGGACTTGGATCTTCACAAATGGTGAGGCATGCTTaGGCCACCAGAGGTGTTTTGTTACAACAGCTAGAG | + |
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Preference number: 3 (lower is better) Translates to: IGLGSSQMVRHA*ATRGVLLQQLE Trigger: CTCTAGCTGTTGTAACAAAACACCTCTGGTGGCTCAAGCATGCCTCACCATTTGTGAAGATCCAAGTCCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR TCA 72 bp | CCATCCTTTGAATTGGACTTGGATCTTCACAAATGGTaGGGCATGCTTGAGCCACCAGAGGTGTTTTGTTAC | + |
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Preference number: 3 (lower is better) Translates to: PSFELDLDLHKW*GMLEPPEVFCY Trigger: GTAACAAAACACCTCTGGTGGCTCAAGCATGCCTCACCATTTGTGAAGATCCAAGTCCAATTCAAAGGATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR TCA 72 bp | TACACGGGCAACCTCAGAAATGTGCTGACCATCCTTTaGATTGGACTTGGATCTTCACAAATGGTGAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: YTGNLRNVLTIL*IGLGSSQMVRH Trigger: ATGCCTCACCATTTGTGAAGATCCAAGTCCAATTCAAAGGATGGTCAGCACATTTCTGAGGTTGCCCGTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CAA 90 bp | AGAGGTGTTTTGTTACAACAGCTAGAGCAGGGTGATACTGTCTGCACTGGTATTTTTGGTTTTCTTGAATaGGAGTCTCCTGTGCGCTCT | + |
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Preference number: 3 (lower is better) Translates to: RGVLLQQLEQGDTVCTGIFGFLE*ESPVRS Trigger: AGAGCGCACAGGAGACTCCAATTCAAGAAAACCAAA...AATACCAGTGCAGACAGTATCACCCTGCTCTAGCTGTTGTAACAAAACACCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CAA 90 bp | ATACACGGGCAACCTCAGAAATGTGCTGACCATCCTTTGAATTGGACTTGGATCTTGGTTTTGGTTTTCTaGAATTGGAGTCTCCTGTGC | + |
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Preference number: 3 (lower is better) Translates to: IHGQPQKCADHPLNWTWILVLVF*NWSLLC Trigger: GCACAGGAGACTCCAATTCAAGAAAACCAAAACCAA...GATCCAAGTCCAATTCAAAGGATGGTCAGCACATTTCTGAGGTTGCCCGTGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR-3UTR CAA 90 bp | AGATGTCCCGAGGGAAGCAAATGTCTGAGAGCCCATCACATCCTATGTGTGTGTGCCCTGGTATCTTCTTaGGAGTTAAGTTGTTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: RCPEGSKCLRAHHILCVCALVSS*ELSCFK Trigger: TTTAAAACAACTTAACTCCAAAGAAGATACCAGGGC...ACACACACATAGGATGTGATGGGCTCTCAGACATTTGCTTCCCTCGGGACATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR GCA 72 bp | TTATCTGTCTGTTTATTTTGGGTGTGGTTATGTTCGTaGCACACCAAATGTGTGGAGGTCAGAGGACAACCT | + |
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Preference number: 3 (lower is better) Translates to: LSVCLFWVWLCS*HTKCVEVRGQP Trigger: AGGTTGTCCTCTGACCTCCACACATTTGGTGTGGCACGAACATAACCACACCCAAAATAAACAGACAGATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR GCA 72 bp | TTGAATTGGACTTGGATCTTCACAAATGGTGAGGCATaGTTGAGCCACCAGAGGTGTTTTGTTACAACAGCT | + |
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Preference number: 3 (lower is better) Translates to: LNWTWIFTNGEA*LSHQRCFVTTA Trigger: AGCTGTTGTAACAAAACACCTCTGGTGGCTCAAGCATGCCTCACCATTTGTGAAGATCCAAGTCCAATTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CCA 72 bp | AAATTAGTGAGTTTATCTGTCTGTTTATTTTGGGTGTaGTTATGTTCGTGCCACACCAAATGTGTGGAGGTC | + |
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Preference number: 3 (lower is better) Translates to: KLVSLSVCLFWV*LCSCHTKCVEV Trigger: GACCTCCACACATTTGGTGTGGCACGAACATAACCACACCCAAAATAAACAGACAGATAAACTCACTAATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR TCA 90 bp | CTGTGCGCTCTGCTGTCCAGTGGCTATGTAGCCACAGCTGGCCTTGAGCCTCCACTTCCGCAGGAGTTCTaGGGGAGCGTCACCAGACCA | + |
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Preference number: 4 (lower is better) Translates to: LCALLSSGYVATAGLEPPLPQEF*GSVTRP Trigger: TGGTCTGGTGACGCTCCCTCAGAACTCCTGCGGAAG...TGGAGGCTCAAGGCCAGCTGTGGCTACATAGCCACTGGACAGCAGAGCGCACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR GCA 90 bp | TCCAGTGGCTATGTAGCCACAGCTGGCCTTGAGCCTCCAGTCCTCTGCTTCCAAGGTTTTGTGGGGAGATaGCCTCCTCTGGGAACTTGG | + |
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Preference number: 4 (lower is better) Translates to: SSGYVATAGLEPPVLCFQGFVGR*PPLGTW Trigger: CCAAGTTCCCAGAGGAGGGCATCTCCCCACAAAACC...TTGGAAGCAGAGGACTGGAGGCTCAAGGCCAGCTGTGGCTACATAGCCACTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR TCA 90 bp | AGATGTCCCGAGGGAAGCAAATGTCTGAGAGCCCATCACATCCTATGTGTGTGTCTGCTCGAACGGCATTaGCATCTGGCTCCTCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: RCPEGSKCLRAHHILCVCLLERH*HLAPPP Trigger: TGGCGGAGGAGCCAGATGTCAATGCCGTTCGAGCAG...ACACACACATAGGATGTGATGGGCTCTCAGACATTTGCTTCCCTCGGGACATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR GCA 90 bp | GACCCATCAGGAGCAGCTGTCAAGTGCAGCGATTTCCTAAGCAACAGCAGTGGGGCCAAAGCTTCCCACTaGTCGAACGGCATTGACATC | + |
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Preference number: 4 (lower is better) Translates to: DPSGAAVKCSDFLSNSSGAKASH*SNGIDI Trigger: GATGTCAATGCCGTTCGAGCAGTGGGAAGCTTTGGC...CCCACTGCTGTTGCTTAGGAAATCGCTGCACTTGACAGCTGCTCCTGATGGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR TCA 90 bp | CCTCAGATGTCCCGAGGGAAGCAAATGTCTGAGAGCCCATCACATCCTATGTGTGGATGCTTGTCGGGGTaGCACTCCAGAGCTCTAATC | + |
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Preference number: 4 (lower is better) Translates to: PQMSRGKQMSESPSHPMCGCLSG*HSRALI Trigger: GATTAGAGCTCTGGAGTGTCACCCCGACAAGCATCC...ACACATAGGATGTGATGGGCTCTCAGACATTTGCTTCCCTCGGGACATCTGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR TCA 90 bp | CCACCATGTGGCCCTGGGGCTAGAACTCAAGTTGTCAGGCTTGGTAGCAAGTTCCATTTTCTCTGGGTTTaGGTCTGGGTCCCCTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: PPCGPGARTQVVRLGSKFHFLWV*VWVPFL Trigger: AAGAAAGGGGACCCAGACTCAAACCCAGAGAAAATG...GAACTTGCTACCAAGCCTGACAACTTGAGTTCTAGCCCCAGGGCCACATGGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR GCA 90 bp | ATGAGGGTGATCCCCCACCCATCCACCCACTCTCGCCTTCCAGCCAAGGCTGACAACTTGGGTTCCTTTTaGTTCATTTTCTCTGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: MRVIPHPSTHSRLPAKADNLGSF*FIFSGF Trigger: AAACCCAGAGAAAATGAAGCAAAAGGAACCCAAGTT...GTCAGCCTTGGCTGGAAGGCGAGAGTGGGTGGATGGGTGGGGGATCACCCTCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR CCA 90 bp | TCCAGTGGCTATGTAGCCACAGCTGGCCTTGAGCCTCCAGTCCTCTGCTTCCAAAAGTCTCCACAGCTTTaGAGTTCTCAGGATGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: SSGYVATAGLEPPVLCFQKSPQL*SSQDAC Trigger: ACAAGCATCCTGAGAACTCCAAAGCTGTGGAGACTT...TTGGAAGCAGAGGACTGGAGGCTCAAGGCCAGCTGTGGCTACATAGCCACTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR CCA 90 bp | ATACACGGGCAACCTCAGAAATGTGCTGACCATCCTTTGAATTGGACTTGGATCAGAGTCTGGGTTTTGTaGGGAGATGCCCTCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: IHGQPQKCADHPLNWTWIRVWVL*GDALLW Trigger: CCAGAGGAGGGCATCTCCCCACAAAACCCAGACTCT...GATCCAAGTCCAATTCAAAGGATGGTCAGCACATTTCTGAGGTTGCCCGTGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR TCA 90 bp | AGAGGTGTTTTGTTACAACAGCTAGAGCAGGGTGATACTGTCTGCACTGGTATTGCCACAGTTCAAGTCTaGGAGACCTGGAGAGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: RGVLLQQLEQGDTVCTGIATVQV*ETWRVW Trigger: CCAGACTCTCCAGGTCTCTCAGACTTGAACTGTGGC...AATACCAGTGCAGACAGTATCACCCTGCTCTAGCTGTTGTAACAAAACACCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR CCA 90 bp | AGGTCCTGGGTTCAATCCCCAGTAAAAACTAACACAAAGCACACTGTAAGAATGCTGGGTCCCCTTTCTTaGTTTCCCGCTGCTCACTCC | + |
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Preference number: 4 (lower is better) Translates to: RSWVQSPVKTNTKHTVRMLGPLS*FPAAHS Trigger: GGAGTGAGCAGCGGGAAACCAAGAAAGGGGACCCAG...CATTCTTACAGTGTGCTTTGTGTTAGTTTTTACTGGGGATTGAACCCAGGACCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR CCA 90 bp | AGGTCCTGGGTTCAATCCCCAGTAAAAACTAACACAAAGCACACTGTAAGAATGGAGACCTGGAGAGTCTaGGTTTTGTGGGGAGATGCC | + |
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Preference number: 4 (lower is better) Translates to: RSWVQSPVKTNTKHTVRMETWRV*VLWGDA Trigger: GGCATCTCCCCACAAAACCCAGACTCTCCAGGTCTC...CATTCTTACAGTGTGCTTTGTGTTAGTTTTTACTGGGGATTGAACCCAGGACCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CAA 72 bp | ATACACGGGCAACCTCAGAAATGTGCTGACCATCCTTaGAATTGGACTTGGATCTTCACAAATGGTGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: IHGQPQKCADHP*NWTWIFTNGEA Trigger: TGCCTCACCATTTGTGAAGATCCAAGTCCAATTCAAAGGATGGTCAGCACATTTCTGAGGTTGCCCGTGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| 3UTR CAA 72 bp | AATTGGACTTGGATCTTCACAAATGGTGAGGCATGCTaGAGCCACCAGAGGTGTTTTGTTACAACAGCTAGA | + |
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Preference number: 4 (lower is better) Translates to: NWTWIFTNGEAC*SHQRCFVTTAR Trigger: TCTAGCTGTTGTAACAAAACACCTCTGGTGGCTCAAGCATGCCTCACCATTTGTGAAGATCCAAGTCCAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR TCA 90 bp | GAAATAAGTTATAGTGAAGTTGTGAGAACTACGGACCCTGATCTGGGATTACTGAGATTTCATAGTTTCTaGACTTCCGCAGGAGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: EISYSEVVRTTDPDLGLLRFHSF*TSAGVL Trigger: CAGAACTCCTGCGGAAGTTCAGAAACTATGAAATCT...CAGTAATCCCAGATCAGGGTCCGTAGTTCTCACAACTTCACTATAACTTATTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR GCA 90 bp | TTTCTTTATTTATATTTCAATGTTATCCCCTTTCCAGGTCTCCCCTCTGGAGACTCTAATCTTAAATTCTaGCAAGATTTGCTCAACCGA | + |
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Preference number: 4 (lower is better) Translates to: FLYLYFNVIPFPGLPSGDSNLKF*QDLLNR Trigger: TCGGTTGAGCAAATCTTGGCAGAATTTAAGATTAGA...GTCTCCAGAGGGGAGACCTGGAAAGGGGATAACATTGAAATATAAATAAAGAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR CAA 90 bp | TGCCTCCATGAGGGTGATCCCCCACCCATCCACCCACTCTCGCCTTCCAGCCAATCTGGGTCCCCTTTCTaGGTTTCCCGCTGCTCACTC | + |
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Preference number: 5 (lower is better) Translates to: CLHEGDPPPIHPLSPSSQSGSPF*VSRCSL Trigger: GAGTGAGCAGCGGGAAACCAAGAAAGGGGACCCAGA...TTGGCTGGAAGGCGAGAGTGGGTGGATGGGTGGGGGATCACCCTCATGGAGGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS TCA 90 bp | AGCGTCACCAGACCAGCGGAAACGAAGGTGGCCACAGTTCAAGTCTaGGAGACCTGGAGAGTCTGGGTTTTGTGGGGAGATGCCCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: SVTRPAETKVATVQV*ETWRVWVLWGDALL Trigger: GAGGAGGGCATCTCCCCACAAAACCCAGACTCTCCAGGTCTCTCAGACTTGAACTGTGGCCACCTTCGTTTCCGCTGGTCTGGTGACGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS-3UTR CAA 90 bp | GACCCATCAGGAGCAGCTGTCAAGTGCAGCGATTTCCTAAGCAACAGCAGTGGGTGGAGAGTCTGGGTTTaGTGGGGAGATGCCCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: DPSGAAVKCSDFLSNSSGWRVWV*WGDALL Trigger: GAGGAGGGCATCTCCCCACAAAACCCAGACTCTCCA...CCCACTGCTGTTGCTTAGGAAATCGCTGCACTTGACAGCTGCTCCTGATGGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS CCA 90 bp | CGCTGCTCACTCCGTTCCTTGTTTGGAACTGAGCTGGTGAACGTCTaGCCACTTCCTTCCAGCATCAAGTCCTTCTTACTTCTGACAGCC | + |
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Preference number: 5 (lower is better) Translates to: RCSLRSLFGTELVNV*PLPSSIKSFLLLTA Trigger: GGCTGTCAGAAGTAAGAAGGACTTGATGCTGGAAGGAAGTGGCCAGACGTTCACCAGCTCAGTTCCAAACAAGGAACGGAGTGAGCAGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS TCA 90 bp | TGGTTTCCCGCTGCTCACTCCGTTCCTTGTTTGGAACTGAGCTGGTaGACGTCTGGCCACTTCCTTCCAGCATCAAGTCCTTCTTACTTC | + |
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Preference number: 5 (lower is better) Translates to: WFPAAHSVPCLELSW*TSGHFLPASSPSYF Trigger: GAAGTAAGAAGGACTTGATGCTGGAAGGAAGTGGCCAGACGTTCACCAGCTCAGTTCCAAACAAGGAACGGAGTGAGCAGCGGGAAACCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS GCA 90 bp | ATTTTCTCTGGGTTTGAGTCTGGGTCCCCTTTCTTGGTTTCCCGCTaGTCACTCCGTTCCTTGTTTGGAACTGAGCTGGTGAACGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: IFSGFESGSPFLVSR*SLRSLFGTELVNVW Trigger: CCAGACGTTCACCAGCTCAGTTCCAAACAAGGAACGGAGTGAGCAGCGGGAAACCAAGAAAGGGGACCCAGACTCAAACCCAGAGAAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS-3UTR CAA 90 bp | CCTCAGATGTCCCGAGGGAAGCAAATGTCTGAGAGCCCATCACATCCTATGTGTTGCTCACTCCGTTCCTaGTTTGGAACTGAGCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: PQMSRGKQMSESPSHPMCCSLRS*FGTELV Trigger: CACCAGCTCAGTTCCAAACAAGGAACGGAGTGAGCA...ACACATAGGATGTGATGGGCTCTCAGACATTTGCTTCCCTCGGGACATCTGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR CAA 90 bp | AGAGGTGTTTTGTTACAACAGCTAGAGCAGGGTGATACTGTCTGCACTGGTATTACTGCTCGAACGGCATaGACATCTGGCTCCTCCGCC | + |
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Preference number: 5 (lower is better) Translates to: RGVLLQQLEQGDTVCTGITARTA*TSGSSA Trigger: GGCGGAGGAGCCAGATGTCAATGCCGTTCGAGCAGT...AATACCAGTGCAGACAGTATCACCCTGCTCTAGCTGTTGTAACAAAACACCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS GCA 90 bp | AGGATGCTTGTCGGGGTGACACTCCAGAGCTCTAATCTTAAATTCTaGCAAGATTTGCTCAACCGAGGAGAGCTCATCGCATCCCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: RMLVGVTLQSSNLKF*QDLLNRGELIASQQ Trigger: TTGCTGGGATGCGATGAGCTCTCCTCGGTTGAGCAAATCTTGGCAGAATTTAAGATTAGAGCTCTGGAGTGTCACCCCGACAAGCATCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR CAA 90 bp | GACCCATCAGGAGCAGCTGTCAAGTGCAGCGATTTCCTAAGCAACAGCAGTGGGGAACTTGGGTTCCTTTaGCTTCATTTTCTCTGGGTT | + |
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Preference number: 5 (lower is better) Translates to: DPSGAAVKCSDFLSNSSGELGFL*LHFLWV Trigger: AACCCAGAGAAAATGAAGCAAAAGGAACCCAAGTTC...CCCACTGCTGTTGCTTAGGAAATCGCTGCACTTGACAGCTGCTCCTGATGGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR CAA 90 bp | AGATGTCCCGAGGGAAGCAAATGTCTGAGAGCCCATCACATCCTATGTGTGTGTTCATTTTCTCTGGGTTaGAGTCTGGGTCCCCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: RCPEGSKCLRAHHILCVCSFSLG*SLGPLS Trigger: AGAAAGGGGACCCAGACTCAAACCCAGAGAAAATGA...ACACACACATAGGATGTGATGGGCTCTCAGACATTTGCTTCCCTCGGGACATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR CAA 90 bp | AAATGTGCTGACCATCCTTTGAATTGGACTTGGATCTTCACAAATGGTGAGGCAGCTCGACTCTCTGCATaGCACAGAATCTCCTTCGCC | + |
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Preference number: 5 (lower is better) Translates to: KCADHPLNWTWIFTNGEAARLSA*HRISFA Trigger: GGCGAAGGAGATTCTGTGCAATGCAGAGAGTCGAGC...TGCCTCACCATTTGTGAAGATCCAAGTCCAATTCAAAGGATGGTCAGCACATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS-3UTR CAA 90 bp | AAATGTGCTGACCATCCTTTGAATTGGACTTGGATCTTCACAAATGGTGAGGCAAAAGTCTCCACAGCTTaGGAGTTCTCAGGATGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: KCADHPLNWTWIFTNGEAKVSTA*EFSGCL Trigger: CAAGCATCCTGAGAACTCCAAAGCTGTGGAGACTTT...TGCCTCACCATTTGTGAAGATCCAAGTCCAATTCAAAGGATGGTCAGCACATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS CCA 72 bp | TCTGAGGGAGCGTCACCAGACCAGCGGAAACGAAGGTaGCCACAGTTCAAGTCTGAGAGACCTGGAGAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: SEGASPDQRKRR*PQFKSERPGES Trigger: AGACTCTCCAGGTCTCTCAGACTTGAACTGTGGCCACCTTCGTTTCCGCTGGTCTGGTGACGCTCCCTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS GCA 72 bp | GGGTTTGAGTCTGGGTCCCCTTTCTTGGTTTCCCGCTaGTCACTCCGTTCCTTGTTTGGAACTGAGCTGGTG | + |
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Preference number: 6 (lower is better) Translates to: GFESGSPFLVSR*SLRSLFGTELV Trigger: CACCAGCTCAGTTCCAAACAAGGAACGGAGTGAGCAGCGGGAAACCAAGAAAGGGGACCCAGACTCAAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS TCA 72 bp | GCTGCTCACTCCGTTCCTTGTTTGGAACTGAGCTGGTaGACGTCTGGCCACTTCCTTCCAGCATCAAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: AAHSVPCLELSW*TSGHFLPASSP Trigger: AGGACTTGATGCTGGAAGGAAGTGGCCAGACGTTCACCAGCTCAGTTCCAAACAAGGAACGGAGTGAGCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS GCA 72 bp | ATCGAAGTTTTCACTGAGTCGGCCAAAGCTTCCCACTaGTCGAACGGCATTGACATCTGGCTCCTCCGCCAA | + |
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Preference number: 6 (lower is better) Translates to: IEVFTESAKASH*SNGIDIWLLRQ Trigger: TTGGCGGAGGAGCCAGATGTCAATGCCGTTCGAGCAGTGGGAAGCTTTGGCCGACTCAGTGAAAACTTCGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS CAA 72 bp | TCCCCTTTCTTGGTTTCCCGCTGCTCACTCCGTTCCTaGTTTGGAACTGAGCTGGTGAACGTCTGGCCACTT | + |
|
Preference number: 6 (lower is better) Translates to: SPFLVSRCSLRS*FGTELVNVWPL Trigger: AAGTGGCCAGACGTTCACCAGCTCAGTTCCAAACAAGGAACGGAGTGAGCAGCGGGAAACCAAGAAAGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS TCA 72 bp | CTTACTTCTGACAGCCCAATGCATCGAAGTTTTCACTaGGTCGGCCAAAGCTTCCCACTGCTCGAACGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: LTSDSPMHRSFH*VGQSFPLLERH Trigger: ATGCCGTTCGAGCAGTGGGAAGCTTTGGCCGACTCAGTGAAAACTTCGATGCATTGGGCTGTCAGAAGTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS TCA 72 bp | TCAGATTTCATAGTTTCTGAACTTCCGCAGGAGTTCTaGGGGAGCGTCACCAGACCAGCGGAAACGAAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: SDFIVSELPQEF*GSVTRPAETKV Trigger: CACCTTCGTTTCCGCTGGTCTGGTGACGCTCCCTCAGAACTCCTGCGGAAGTTCAGAAACTATGAAATCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS TCA 72 bp | GGCCACTTCCTTCCAGCATCAAGTCCTTCTTACTTCTaGCAGCCCAATGCATCGAAGTTTTCACTGAGTCGG | + |
|
Preference number: 6 (lower is better) Translates to: GHFLPASSPSYF*QPNASKFSLSR Trigger: CCGACTCAGTGAAAACTTCGATGCATTGGGCTGTCAGAAGTAAGAAGGACTTGATGCTGGAAGGAAGTGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS GCA 72 bp | GTCGGGGTGACACTCCAGAGCTCTAATCTTAAATTCTaGCAAGATTTGCTCAACCGAGGAGAGCTCATCGCA | + |
|
Preference number: 6 (lower is better) Translates to: VGVTLQSSNLKF*QDLLNRGELIA Trigger: TGCGATGAGCTCTCCTCGGTTGAGCAAATCTTGGCAGAATTTAAGATTAGAGCTCTGGAGTGTCACCCCGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043317.7 |
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| CDS CCA 72 bp | CTCCGTTCCTTGTTTGGAACTGAGCTGGTGAACGTCTaGCCACTTCCTTCCAGCATCAAGTCCTTCTTACTT | + |
|
Preference number: 6 (lower is better) Translates to: LRSLFGTELVNV*PLPSSIKSFLL Trigger: AAGTAAGAAGGACTTGATGCTGGAAGGAAGTGGCCAGACGTTCACCAGCTCAGTTCCAAACAAGGAACGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS CCA 72 bp | TCATTTTCTCTGGGTTTGAGTCTGGGTCCCCTTTCTTaGTTTCCCGCTGCTCACTCCGTTCCTTGTTTGGAA | + |
|
Preference number: 6 (lower is better) Translates to: SFSLGLSLGPLS*FPAAHSVPCLE Trigger: TTCCAAACAAGGAACGGAGTGAGCAGCGGGAAACCAAGAAAGGGGACCCAGACTCAAACCCAGAGAAAATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS CAA 72 bp | TTCATTTTCTCTGGGTTTGAGTCTGGGTCCCCTTTCTaGGTTTCCCGCTGCTCACTCCGTTCCTTGTTTGGA | + |
|
Preference number: 6 (lower is better) Translates to: FIFSGFESGSPF*VSRCSLRSLFG Trigger: TCCAAACAAGGAACGGAGTGAGCAGCGGGAAACCAAGAAAGGGGACCCAGACTCAAACCCAGAGAAAATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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| CDS GCA 72 bp | TCCAGCATCAAGTCCTTCTTACTTCTGACAGCCCAATaGATCGAAGTTTTCACTGAGTCGGCCAAAGCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: SSIKSFLLLTAQ*IEVFTESAKAS Trigger: GGAAGCTTTGGCCGACTCAGTGAAAACTTCGATGCATTGGGCTGTCAGAAGTAAGAAGGACTTGATGCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043317.7 ENSMUST00000129625.8 |
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