RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DNAJB9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000014905

Ensembl transcript IDs: ENSMUST00000015049.5, ENSMUST00000220421.2

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTACAGCTTCAGACATTTAGTAACCCAAGTCAGGGCCACAGGGCGTaGAGTTTTGAATTTGCAGAGGTTTCACTGCAATTATTATTCAAG +
Preference number: 1 (lower is better)
Translates to: LQLQTFSNPSQGHRA*SFEFAEVSLQLLFK
Trigger: CTTGAATAATAATTGCAGTGAAACCTCTGCAAATTCAAAACTGCACGCCCTGTGGCCCTGACTTGGGTTACTAAATGTCTGAAGCTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
3UTR-3UTR TCA 90 bp GCAAACAGCCAAAAGCAATGGTCTTCTTCACTAAATGACTCAAAATTACAGCTTCAGGGCGTGCAGTTTTaGATTTGCAGAGGTTTCACT +
Preference number: 2 (lower is better)
Translates to: ANSQKQWSSSLNDSKLQLQGVQF*ICRGFT
Trigger: AGTGAAACCTCTGCAAATTCAAAACTGCACGCCCTG...AAGCTGTAATTTTGAGTCATTTAGTGAAGAAGACCATTGCTTTTGGCTGTTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
3UTR-3UTR GCA 90 bp GATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGATCCTAGATAAAGATAAGTaGAAAAGAGTGACTACACAC +
Preference number: 2 (lower is better)
Translates to: DRLGEFQLHKTSRIWPMILDKDK*KRVTTH
Trigger: GTGTGTAGTCACTCTTTTGCACTTATCTTTATCTAG...GATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
3UTR-3UTR CCA 90 bp GATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGATCGTATGGAGTATAACATaGAAAAGTGCAGAACTAAAG +
Preference number: 2 (lower is better)
Translates to: DRLGEFQLHKTSRIWPMIVWSIT*KSAELK
Trigger: CTTTAGTTCTGCACTTTTCCATGTTATACTCCATAC...GATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
3UTR-3UTR CAA 90 bp ATAAGATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATACAGGGCGTGCAGTTTaGAATTTGCAGAGGTTTCAC +
Preference number: 3 (lower is better)
Translates to: IRSSGGISVTQNFKDMAYTGRAV*NLQRFH
Trigger: GTGAAACCTCTGCAAATTCAAAACTGCACGCCCTGT...ATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATCTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
3UTR CCA 72 bp CTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATaGCCTATGATCAGAATATGCTTCACTTTATACATA +
Preference number: 3 (lower is better)
Translates to: LGEFQLHKTSRI*PMIRICFTLYI
Trigger: TATGTATAAAGTGAAGCATATTCTGATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR TCA 90 bp CGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGATCAGATTCCTCTTCGTTGAGTaGCAGTCCTGCAGTGCTTGC +
Preference number: 4 (lower is better)
Translates to: RLGEFQLHKTSRIWPMIRFLFVE*QSCSAC
Trigger: GCAAGCACTGCAGGACTGTCACTCAACGAAGAGGAA...TCTGATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CCA 90 bp GATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGATCCCATCCTGGCGTGTGTaGAAGTGGTTTTCAAAATGC +
Preference number: 4 (lower is better)
Translates to: DRLGEFQLHKTSRIWPMIPSWRV*KWFSKC
Trigger: GCATTTTGAAAACCACTTCCACACACGCCAGGATGG...GATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
3UTR CAA 72 bp ATGTGTGTTTATTTTGAGGGGAGAAGTCCGTCATCTTaGAGAATGAAGTCTCTGGTCTTCTTAGCCAGTCCT +
Preference number: 4 (lower is better)
Translates to: MCVYFEGRSPSS*RMKSLVFLASP
Trigger: AGGACTGGCTAAGAAGACCAGAGACTTCATTCTCAAAGATGACGGACTTCTCCCCTCAAAATAAACACACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR TCA 90 bp GCAAACAGCCAAAAGCAATGGTCTTCTTCACTAAATGACTCAAAATTACAGCTTTTTGATTTGTCGCTCTaGGGCAGACTTTGGCACACC +
Preference number: 4 (lower is better)
Translates to: ANSQKQWSSSLNDSKLQLFDLSL*GRLWHT
Trigger: GGTGTGCCAAAGTCTGCCTCAGAGCGACAAATCAAA...AAGCTGTAATTTTGAGTCATTTAGTGAAGAAGACCATTGCTTTTGGCTGTTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR TCA 90 bp ATAAGATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATTGTGAAAGGCCTTTTTaGTTTGTCGCTCTGAGGCAG +
Preference number: 4 (lower is better)
Translates to: IRSSGGISVTQNFKDMAYCERPF*FVALRQ
Trigger: CTGCCTCAGAGCGACAAATCAAAAAGGCCTTTCACA...ATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATCTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR TCA 90 bp GCAAACAGCCAAAAGCAATGGTCTTCTTCACTAAATGACTCAAAATTACAGCTTATATTTCCTCTTCGTTaGGTGACAGTCCTGCAGTGC +
Preference number: 4 (lower is better)
Translates to: ANSQKQWSSSLNDSKLQLIFPLR*VTVLQC
Trigger: GCACTGCAGGACTGTCACTCAACGAAGAGGAAATAT...AAGCTGTAATTTTGAGTCATTTAGTGAAGAAGACCATTGCTTTTGGCTGTTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR GCA 90 bp ATAAGATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATCAAAAGGACTCCCATTaGCTCTTTGTCCTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: IRSSGGISVTQNFKDMAYQKDSH*LFVLCH
Trigger: ATGGCAAAGGACAAAGAGGCAATGGGAGTCCTTTTG...ATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATCTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR TCA 90 bp ATAAGATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGAAAACTCCTGGAAGTaGTGCCTTTGTCTACTAGAA +
Preference number: 4 (lower is better)
Translates to: IRSSGGISVTQNFKDMAYENSWK*CLCLLE
Trigger: TTCTAGTAGACAAAGGCATCACTTCCAGGAGTTTTC...ATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATCTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR GCA 90 bp CGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGATCAGATGTTTCATACGCTTCTaGAATCTCTCTGAATTTTGC +
Preference number: 4 (lower is better)
Translates to: RLGEFQLHKTSRIWPMIRCFIRF*NLSEFC
Trigger: GCAAAATTCAGAGAGATTGCAGAAGCGTATGAAACA...TCTGATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CCA 90 bp ATAAGATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATACTCTTTCCGACTATTaGCATCCGAGAGTGTTTCAT +
Preference number: 4 (lower is better)
Translates to: IRSSGGISVTQNFKDMAYTLSDY*HPRVFH
Trigger: ATGAAACACTCTCGGATGCCAATAGTCGGAAAGAGT...ATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATCTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CCA 90 bp GATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGATCTTATTTTTGTCAGGGTaGTACTTCATGGCTAATTTG +
Preference number: 4 (lower is better)
Translates to: DRLGEFQLHKTSRIWPMILFLSG*YFMANL
Trigger: CAAATTAGCCATGAAGTACCACCCTGACAAAAATAA...GATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CCA 90 bp ATAAGATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATTGGCGTGTGTGGAAGTaGTTTTCAAAATGCTTCTTA +
Preference number: 4 (lower is better)
Translates to: IRSSGGISVTQNFKDMAYWRVWK*FSKCFL
Trigger: TAAGAAGCATTTTGAAAACCACTTCCACACACGCCA...ATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATCTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR TCA 90 bp GCAAACAGCCAAAAGCAATGGTCTTCTTCACTAAATGACTCAAAATTACAGCTTTGCTTGCTAGATCCATaGAATCTATTTTCAGTCTGT +
Preference number: 4 (lower is better)
Translates to: ANSQKQWSSSLNDSKLQLCLLDP*NLFSVC
Trigger: ACAGACTGAAAATAGATTTCATGGATCTAGCAAGCA...AAGCTGTAATTTTGAGTCATTTAGTGAAGAAGACCATTGCTTTTGGCTGTTTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR GCA 90 bp ATAAGATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATAAGTGGTTTTCAAAATaGTTCTTAGACCGAGTGTTT +
Preference number: 4 (lower is better)
Translates to: IRSSGGISVTQNFKDMAYKWFSK*FLDRVF
Trigger: AAACACTCGGTCTAAGAAGCATTTTGAAAACCACTT...ATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATCTTAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CCA 90 bp GCAAACAGCCAAAAGCAATGGTCTTCTTCACTAAATGACTCAAAATTACAGCTTTATCATAGTAGCTTTTaGAGGCCAGGATTAATTCTG +
Preference number: 4 (lower is better)
Translates to: ANSQKQWSSSLNDSKLQLYHSSF*RPGLIL
Trigger: CAGAATTAATCCTGGCCTCCAAAAGCTACTATGATA...AAGCTGTAATTTTGAGTCATTTAGTGAAGAAGACCATTGCTTTTGGCTGTTTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS TCA 90 bp AACATATCATCAAACAATCCGCCTCCAAAAGAAAACTCCTGGAAGTaGTGCCTTTGTCTACTAGAACCATCCTGGCGTGTGTGGAAGTGG +
Preference number: 5 (lower is better)
Translates to: NISSNNPPPKENSWK*CLCLLEPSWRVWKW
Trigger: CCACTTCCACACACGCCAGGATGGTTCTAGTAGACAAAGGCATCACTTCCAGGAGTTTTCTTTTGGAGGCGGATTGTTTGATGATATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CAA 90 bp GATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGATCTCAAAAGGACTCCCATaGCCTCTTTGTCCTTTGCCA +
Preference number: 5 (lower is better)
Translates to: DRLGEFQLHKTSRIWPMISKGLP*PLCPLP
Trigger: TGGCAAAGGACAAAGAGGCAATGGGAGTCCTTTTGA...GATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CAA 90 bp GATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGATCCTGGAAGTGATGCCTTaGTCTACTAGAACCATCCTG +
Preference number: 5 (lower is better)
Translates to: DRLGEFQLHKTSRIWPMILEVMP*STRTIL
Trigger: CAGGATGGTTCTAGTAGACAAAGGCATCACTTCCAG...GATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CAA 90 bp GATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGATCCTTTGTCCTTTGCCATaGGTAAAAGCACTGTGTCCA +
Preference number: 5 (lower is better)
Translates to: DRLGEFQLHKTSRIWPMILCPLP*VKALCP
Trigger: TGGACACAGTGCTTTTACCAATGGCAAAGGACAAAG...GATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CAA 90 bp CGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATGATCAGATCAGGGCTTTTATTTTaGTCAGGGTGGTACTTCATG +
Preference number: 5 (lower is better)
Translates to: RLGEFQLHKTSRIWPMIRSGLLF*SGWYFM
Trigger: CATGAAGTACCACCCTGACAAAAATAAAAGCCCTGA...TCTGATCATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CAA 90 bp ATAAGATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATCATATTTCCTCTTCGTaGAGTGACAGTCCTGCAGTG +
Preference number: 5 (lower is better)
Translates to: IRSSGGISVTQNFKDMAYHISSS*SDSPAV
Trigger: CACTGCAGGACTGTCACTCAACGAAGAGGAAATATG...ATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATCTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CAA 90 bp GCAAACAGCCAAAAGCAATGGTCTTCTTCACTAAATGACTCAAAATTACAGCTTGCTCTGAGGCAGACTTaGGCACACCTAAGATATCAT +
Preference number: 5 (lower is better)
Translates to: ANSQKQWSSSLNDSKLQLALRQT*AHLRYH
Trigger: ATGATATCTTAGGTGTGCCAAAGTCTGCCTCAGAGC...AAGCTGTAATTTTGAGTCATTTAGTGAAGAAGACCATTGCTTTTGGCTGTTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS-3UTR CAA 90 bp ATAAGATCGTCTGGGGGAATTTCAGTTACACAAAACTTCAAGGATATGGCCTATTACTCTTTCCGACTATaGGCATCCGAGAGTGTTTCA +
Preference number: 5 (lower is better)
Translates to: IRSSGGISVTQNFKDMAYYSFRL*ASESVS
Trigger: TGAAACACTCTCGGATGCCAATAGTCGGAAAGAGTA...ATAGGCCATATCCTTGAAGTTTTGTGTAACTGAAATTCCCCCAGACGATCTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS CCA 90 bp GCTCTGAGGCAGACTTTGGCACACCTAAGATATCATAGTAGCTTTTaGAGGCCAGGATTAATTCTGTTATCATTAAAATGCAGATTGCAA +
Preference number: 5 (lower is better)
Translates to: ALRQTLAHLRYHSSF*RPGLILLSLKCRLQ
Trigger: TTGCAATCTGCATTTTAATGATAACAGAATTAATCCTGGCCTCCAAAAGCTACTATGATATCTTAGGTGTGCCAAAGTCTGCCTCAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015049.5
ENSMUST00000220421.2
CDS CAA 72 bp TCCGCCTCCAAAAGAAAACTCCTGGAAGTGATGCCTTaGTCTACTAGAACCATCCTGGCGTGTGTGGAAGTG +
Preference number: 6 (lower is better)
Translates to: SASKRKLLEVMP*STRTILACVEV
Trigger: CACTTCCACACACGCCAGGATGGTTCTAGTAGACAAAGGCATCACTTCCAGGAGTTTTCTTTTGGAGGCGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS CAA 72 bp TCAAAAGGACTCCCATTGCCTCTTTGTCCTTTGCCATaGGTAAAAGCACTGTGTCCAATTGTGTCATACTCT +
Preference number: 6 (lower is better)
Translates to: SKGLPLPLCPLP*VKALCPIVSYS
Trigger: AGAGTATGACACAATTGGACACAGTGCTTTTACCAATGGCAAAGGACAAAGAGGCAATGGGAGTCCTTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS CAA 72 bp ACAATCAGTGTATGTAGTAACCATATTTCCTCTTCGTaGAGTGACAGTCCTGCAGTGCTTGCTAGATCCATG +
Preference number: 6 (lower is better)
Translates to: TISVCSNHISSS*SDSPAVLARSM
Trigger: CATGGATCTAGCAAGCACTGCAGGACTGTCACTCAACGAAGAGGAAATATGGTTACTACATACACTGATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS CAA 90 bp AATGACTGTTCAAAAGGACTCCCATTGCCTCTTTGTCCTTTGCCATaGGTAAAAGCACTGTGTCCAATTGTGTCATACTCTTTCCGACTA +
Preference number: 6 (lower is better)
Translates to: NDCSKGLPLPLCPLP*VKALCPIVSYSFRL
Trigger: TAGTCGGAAAGAGTATGACACAATTGGACACAGTGCTTTTACCAATGGCAAAGGACAAAGAGGCAATGGGAGTCCTTTTGAACAGTCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015049.5
CDS CCA 72 bp CAGACTTTGGCACACCTAAGATATCATAGTAGCTTTTaGAGGCCAGGATTAATTCTGTTATCATTAAAATGC +
Preference number: 6 (lower is better)
Translates to: QTLAHLRYHSSF*RPGLILLSLKC
Trigger: GCATTTTAATGATAACAGAATTAATCCTGGCCTCCAAAAGCTACTATGATATCTTAGGTGTGCCAAAGTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015049.5
ENSMUST00000220421.2