Pregenerated sensors for DNAJB8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048206Ensembl transcript IDs: ENSMUST00000061866.6, ENSMUST00000203827.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCACTCCACACTCACAGTGAGGGAGGGCCCAGCATGTCACTGTCCTaGGGGAATATGGGACAGGGTCTGTGGCTGGGGCTGCAGACCTGC | + |
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Preference number: 1 (lower is better) Translates to: SLHTHSEGGPSMSLS*GNMGQGLWLGLQTC Trigger: GCAGGTCTGCAGCCCCAGCCACAGACCCTGTCCCATATTCCCGCAGGACAGTGACATGCTGGGCCCTCCCTCACTGTGAGTGTGGAGTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| 3UTR CCA 90 bp | CCAGCATGTCACTGTCCTGCGGGAATATGGGACAGGGTCTGTGGCTaGGGCTGCAGACCTGCTGAATCTTCTTGTGAGGCAGCAGCATCC | + |
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Preference number: 1 (lower is better) Translates to: PACHCPAGIWDRVCG*GCRPAESSCEAAAS Trigger: GGATGCTGCTGCCTCACAAGAAGATTCAGCAGGTCTGCAGCCCCAGCCACAGACCCTGTCCCATATTCCCGCAGGACAGTGACATGCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| 3UTR TCA 90 bp | TTTCCACCATGGCCTGTACCCTTTCTTCCACCTCAGCCTGCATGCTaGGGTCCAGCTGGTAAACCTGTAGGTCAGAGGTCCCTCAGCGCA | + |
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Preference number: 1 (lower is better) Translates to: FPPWPVPFLPPQPAC*GPAGKPVGQRSLSA Trigger: TGCGCTGAGGGACCTCTGACCTACAGGTTTACCAGCTGGACCTCAGCATGCAGGCTGAGGTGGAAGAAAGGGTACAGGCCATGGTGGAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| 3UTR-3UTR CCA 90 bp | TGGGAAAGCAGACTGGACCTTTCCACCATGGCCTGTACCCTTTCTTCCACCTCAATGGGACAGGGTCTGTaGCTGGGGCTGCAGACCTGC | + |
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Preference number: 2 (lower is better) Translates to: WESRLDLSTMACTLSSTSMGQGL*LGLQTC Trigger: GCAGGTCTGCAGCCCCAGCCACAGACCCTGTCCCAT...TGAGGTGGAAGAAAGGGTACAGGCCATGGTGGAAAGGTCCAGTCTGCTTTCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| 3UTR CAA 90 bp | ATCCACTTGCTCAGCACAAAGCGTCCATCTGGGAGGAGTGACACCTaGGGCTGTGGATGTACATTACCACTTCCTCCCATGACTGCCCGT | + |
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Preference number: 2 (lower is better) Translates to: IHLLSTKRPSGRSDT*GCGCTLPLPPMTAR Trigger: ACGGGCAGTCATGGGAGGAAGTGGTAATGTACATCCACAGCCCAAGGTGTCACTCCTCCCAGATGGACGCTTTGTGCTGAGCAAGTGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| 3UTR-3UTR GCA 90 bp | TGGGAAAGCAGACTGGACCTTTCCACCATGGCCTGTACCCTTTCTTCCACCTCAAGCATGTCACTGTCCTaGGGGAATATGGGACAGGGT | + |
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Preference number: 2 (lower is better) Translates to: WESRLDLSTMACTLSSTSSMSLS*GNMGQG Trigger: ACCCTGTCCCATATTCCCGCAGGACAGTGACATGCT...TGAGGTGGAAGAAAGGGTACAGGCCATGGTGGAAAGGTCCAGTCTGCTTTCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| 3UTR CCA 72 bp | AGGGAGGGCCCAGCATGTCACTGTCCTGCGGGAATATaGGACAGGGTCTGTGGCTGGGGCTGCAGACCTGCT | + |
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Preference number: 3 (lower is better) Translates to: REGPACHCPAGI*DRVCGWGCRPA Trigger: AGCAGGTCTGCAGCCCCAGCCACAGACCCTGTCCCATATTCCCGCAGGACAGTGACATGCTGGGCCCTCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| 3UTR GCA 72 bp | ACTCACAGTGAGGGAGGGCCCAGCATGTCACTGTCCTaGGGGAATATGGGACAGGGTCTGTGGCTGGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: THSEGGPSMSLS*GNMGQGLWLGL Trigger: CAGCCCCAGCCACAGACCCTGTCCCATATTCCCGCAGGACAGTGACATGCTGGGCCCTCCCTCACTGTGAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| 3UTR TCA 72 bp | ACGTTATCGTGGGCCTTGTTCACTCCACACTCACAGTaGGGGAGGGCCCAGCATGTCACTGTCCTGCGGGAA | + |
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Preference number: 3 (lower is better) Translates to: TLSWALFTPHSQ*GRAQHVTVLRE Trigger: TTCCCGCAGGACAGTGACATGCTGGGCCCTCCCTCACTGTGAGTGTGGAGTGAACAAGGCCCACGATAACGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| CDS-3UTR GCA 90 bp | GGTTGCGACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTATTGGCACCGCCACCTaGTCTCCATCTGTCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: GCDYYVPLWPPRLAQGWVIGTAT*SPSVTA Trigger: GGCTGTGACAGATGGAGAGCAGGTGGCGGTGCCAAT...AACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTCGCAACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR CCA 90 bp | GCGACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTAGGTCGGCTGCCCCCACCATaGCCCAGAGTATTGAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: ATTMSPCGPLGWPRDGLGRLPPP*PRVLKD Trigger: ATCTTTCAATACTCTGGGCCATGGTGGGGGCAGCCG...ACCTAACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTCGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR CCA 90 bp | GACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTAGGTGGAAGCAGATGAAAAGGTaGAGCGGCTGCCCCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: DYYVPLWPPRLAQGWVRWKQMKR*SGCPHH Trigger: ATGGTGGGGGCAGCCGCTCCACCTTTTCATCTGCTT...CCACCTAACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR TCA 90 bp | AACCAGTTAGGTTGCGACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGCTCAGGGGAGGCGCTTaGTTGTACACCCAGCACTTC | + |
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Preference number: 4 (lower is better) Translates to: NQLGCDYYVPLWPPRLAQLRGGA*LYTQHF Trigger: GAAGTGCTGGGTGTACAATCAAGCGCCTCCCCTGAG...CTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTCGCAACCTAACTGGTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR TCA 90 bp | GCGACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTAGGTATGACATCACTGACTTaGACCCTGAGCTGCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: ATTMSPCGPLGWPRDGLGMTSLT*TLSCQS Trigger: GCTCTGGCAGCTCAGGGTTCAAGTCAGTGATGTCAT...ACCTAACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTCGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR TCA 90 bp | GACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTAGGTGGGCTTCTCCTTGCCATTaGCAGTTACTGACCGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: DYYVPLWPPRLAQGWVRWASPCH*QLLTGA Trigger: AGCTCCGGTCAGTAACTGTCAATGGCAAGGAGAAGC...CCACCTAACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR TCA 90 bp | ATTAACCAGTTAGGTTGCGACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCTTCGATAGGCCTTCTTaGTGTCCTCAGGGGAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: INQLGCDYYVPLWPPRLAFDRPS*CPQGRR Trigger: GCGCCTCCCCTGAGGACATCAAGAAGGCCTATCGAA...GGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTCGCAACCTAACTGGTTAAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR TCA 90 bp | ACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTAGGTGGCCATGGCCCAGAGTATTaGAAGATGACAAGGCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: TTMSPCGPLGWPRDGLGGHGPEY*KMTRLP Trigger: TGGAAGCCTTGTCATCTTTCAATACTCTGGGCCATG...GCCACCTAACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR TCA 90 bp | CTCCACACTCACAGTGAGGGAGGGCCCAGCATGTCACTGTCCTGCGGGAATATGATGACATCACTGACTTaGACCCTGAGCTGCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: LHTHSEGGPSMSLSCGNMMTSLT*TLSCQS Trigger: GCTCTGGCAGCTCAGGGTTCAAGTCAGTGATGTCAT...CATATTCCCGCAGGACAGTGACATGCTGGGCCCTCCCTCACTGTGAGTGTGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| CDS-3UTR CCA 90 bp | GGAATATGGGACAGGGTCTGTGGCTGGGGCTGCAGACCTGCTGAATCTTCTTGTAAGCAGATGAAAAGGTaGAGCGGCTGCCCCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: GIWDRVCGWGCRPAESSCKQMKR*SGCPHH Trigger: ATGGTGGGGGCAGCCGCTCCACCTTTTCATCTGCTT...ACAAGAAGATTCAGCAGGTCTGCAGCCCCAGCCACAGACCCTGTCCCATATTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| CDS-3UTR TCA 90 bp | GTTCACTCCACACTCACAGTGAGGGAGGGCCCAGCATGTCACTGTCCTGCGGGACAGAGTATTGAAAGATaGCAAGGCTTCCATGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: VHSTLTVREGPACHCPAGQSIER*QGFHEG Trigger: GCCTTCATGGAAGCCTTGTCATCTTTCAATACTCTG...TCCCGCAGGACAGTGACATGCTGGGCCCTCCCTCACTGTGAGTGTGGAGTGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| CDS-3UTR GCA 90 bp | ATTAACCAGTTAGGTTGCGACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCGGGTTCTTGTCAGGGTaGCAACGCAAAGCCAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: INQLGCDYYVPLWPPRLAGFLSG*QRKASF Trigger: AAAGCTGGCTTTGCGTTGGCACCCTGACAAGAACCC...GGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTCGCAACCTAACTGGTTAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR CCA 90 bp | TCTGGGAGGAGTGACACCTTGGGCTGTGGATGTACATTACCACTTCCTCCCATGCGGCTGCCCCCACCATaGCCCAGAGTATTGAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: SGRSDTLGCGCTLPLPPMRLPPP*PRVLKD Trigger: ATCTTTCAATACTCTGGGCCATGGTGGGGGCAGCCG...CATGGGAGGAAGTGGTAATGTACATCCACAGCCCAAGGTGTCACTCCTCCCAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| CDS-3UTR TCA 90 bp | TCACTTGGCACATTTATTAACCAGTTAGGTTGCGACTACTATGTCCCCTTGTGGCAGAGTATTGAAAGATaGCAAGGCTTCCATGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: SLGTFINQLGCDYYVPLWQSIER*QGFHEG Trigger: GCCTTCATGGAAGCCTTGTCATCTTTCAATACTCTG...CCACAAGGGGACATAGTAGTCGCAACCTAACTGGTTAATAAATGTGCCAAGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS GCA 90 bp | GCCAGCACCGAAGGGACTGCTATGGGGGACATTGGCACCGCCACCTaGTCTCCATCTGTCACAGCCTGCCCGGTCGTACACAGAACGCTT | + |
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Preference number: 5 (lower is better) Translates to: ASTEGTAMGDIGTAT*SPSVTACPVVHRTL Trigger: AAGCGTTCTGTGTACGACCGGGCAGGCTGTGACAGATGGAGAGCAGGTGGCGGTGCCAATGTCCCCCATAGCAGTCCCTTCGGTGCTGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS CCA 90 bp | TTCGGAAGGGATAGCCAGCACCGAAGGGACTGCTATGGGGGACATTaGCACCGCCACCTGCTCTCCATCTGTCACAGCCTGCCCGGTCGT | + |
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Preference number: 5 (lower is better) Translates to: FGRDSQHRRDCYGGH*HRHLLSICHSLPGR Trigger: ACGACCGGGCAGGCTGTGACAGATGGAGAGCAGGTGGCGGTGCCAATGTCCCCCATAGCAGTCCCTTCGGTGCTGGCTATCCCTTCCGAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR CAA 90 bp | TACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTAGGTGGCTGTTGTTGTCGGGGTTCTaGTCAGGGTGCCAACGCAAA | + |
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Preference number: 5 (lower is better) Translates to: YYVPLWPPRLAQGWVRWLLLSGF*SGCQRK Trigger: TTTGCGTTGGCACCCTGACAAGAACCCCGACAACAA...CAGCCACCTAACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR CAA 90 bp | GCGACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTAGGTGATGACATCACTGACTaGAACCCTGAGCTGCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: ATTMSPCGPLGWPRDGLGDDITD*NPELPE Trigger: CTCTGGCAGCTCAGGGTTCAAGTCAGTGATGTCATC...ACCTAACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTCGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR CAA 90 bp | GACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTAGGTGGAGCTTCTCCTTGCCATaGACAGTTACTGACCGGAGC | + |
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Preference number: 5 (lower is better) Translates to: DYYVPLWPPRLAQGWVRWSFSLP*TVTDRS Trigger: GCTCCGGTCAGTAACTGTCAATGGCAAGGAGAAGCT...CCACCTAACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR CAA 90 bp | GTTGCGACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTATCAGCTTCTTCTTTGTaGTCGGGGTTCTTGTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: VATTMSPCGPLGWPRDGLSASSL*SGFLSG Trigger: CCCTGACAAGAACCCCGACAACAAAGAAGAAGCTGA...TAACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTCGCAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS-3UTR CAA 90 bp | TGGGACAGGGTCTGTGGCTGGGGCTGCAGACCTGCTGAATCTTCTTGTGAGGCAGATGACATCACTGACTaGAACCCTGAGCTGCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: WDRVCGWGCRPAESSCEADDITD*NPELPE Trigger: CTCTGGCAGCTCAGGGTTCAAGTCAGTGATGTCATC...TGCCTCACAAGAAGATTCAGCAGGTCTGCAGCCCCAGCCACAGACCCTGTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203827.2 |
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| CDS-3UTR CAA 90 bp | GGTTGCGACTACTATGTCCCCTTGTGGCCCCCTAGGCTGGCCCAGGGATGGGTTCTCATGAGCTTCTCCTaGCCATTGACAGTTACTGAC | + |
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Preference number: 5 (lower is better) Translates to: GCDYYVPLWPPRLAQGWVLMSFS*PLTVTD Trigger: GTCAGTAACTGTCAATGGCAAGGAGAAGCTCATGAG...AACCCATCCCTGGGCCAGCCTAGGGGGCCACAAGGGGACATAGTAGTCGCAACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS GCA 90 bp | AAATATCCTCAGGATTTCGGAAGGGATAGCCAGCACCGAAGGGACTaGTATGGGGGACATTGGCACCGCCACCTGCTCTCCATCTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: KYPQDFGRDSQHRRD*YGGHWHRHLLSICH Trigger: GTGACAGATGGAGAGCAGGTGGCGGTGCCAATGTCCCCCATAGCAGTCCCTTCGGTGCTGGCTATCCCTTCCGAAATCCTGAGGATATTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS CCA 90 bp | CCACCAAACGAAGCAGATGAAAAGGTGGAGCGGCTGCCCCCACCATaGCCCAGAGTATTGAAAGATGACAAGGCTTCCATGAAGGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: PPNEADEKVERLPPP*PRVLKDDKASMKAG Trigger: CCCAGCCTTCATGGAAGCCTTGTCATCTTTCAATACTCTGGGCCATGGTGGGGGCAGCCGCTCCACCTTTTCATCTGCTTCGTTTGGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061866.6 ENSMUST00000203827.2 |
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| CDS TCA 90 bp | TCACCTTACGGCCGTTCACCATCTCAGTCGATGACATCACTGACTTaGACCCTGAGCTGCCAGAGCCACCAAACGAAGCAGATGAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: SPYGRSPSQSMTSLT*TLSCQSHQTKQMKR Trigger: CCTTTTCATCTGCTTCGTTTGGTGGCTCTGGCAGCTCAGGGTTCAAGTCAGTGATGTCATCGACTGAGATGGTGAACGGCCGTAAGGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061866.6 ENSMUST00000203827.2 |
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| CDS TCA 90 bp | TCTGTCACAGCCTGCCCGGTCGTACACAGAACGCTTCTTAGAGTCTaGCAAGACTTCGTAGGCTTCGGAAACCTGCTTAAACTTCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: SVTACPVVHRTLLRV*QDFVGFGNLLKLLL Trigger: GAGAAGAAGTTTAAGCAGGTTTCCGAAGCCTACGAAGTCTTGTCAGACTCTAAGAAGCGTTCTGTGTACGACCGGGCAGGCTGTGACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS CCA 72 bp | GATAGCCAGCACCGAAGGGACTGCTATGGGGGACATTaGCACCGCCACCTGCTCTCCATCTGTCACAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: DSQHRRDCYGGH*HRHLLSICHSL Trigger: CAGGCTGTGACAGATGGAGAGCAGGTGGCGGTGCCAATGTCCCCCATAGCAGTCCCTTCGGTGCTGGCTATC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS TCA 72 bp | GGCCGTTCACCATCTCAGTCGATGACATCACTGACTTaGACCCTGAGCTGCCAGAGCCACCAAACGAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: GRSPSQSMTSLT*TLSCQSHQTKQ Trigger: CTGCTTCGTTTGGTGGCTCTGGCAGCTCAGGGTTCAAGTCAGTGATGTCATCGACTGAGATGGTGAACGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061866.6 ENSMUST00000203827.2 |
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| CDS TCA 72 bp | CACCCTCATGAGCTTCTCCTTGCCATTGACAGTTACTaGCCGGAGCTGTCCATCTTCTTCCACCTCCACCCG | + |
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Preference number: 6 (lower is better) Translates to: HPHELLLAIDSY*PELSIFFHLHP Trigger: CGGGTGGAGGTGGAAGAAGATGGACAGCTCCGGTCAGTAACTGTCAATGGCAAGGAGAAGCTCATGAGGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061866.6 |
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| CDS CAA 72 bp | CGGCCGTTCACCATCTCAGTCGATGACATCACTGACTaGAACCCTGAGCTGCCAGAGCCACCAAACGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: RPFTISVDDITD*NPELPEPPNEA Trigger: TGCTTCGTTTGGTGGCTCTGGCAGCTCAGGGTTCAAGTCAGTGATGTCATCGACTGAGATGGTGAACGGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061866.6 ENSMUST00000203827.2 |
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| CDS CAA 90 bp | GCAGATGAAAAGGTGGAGCGGCTGCCCCCACCATGGCCCAGAGTATaGAAAGATGACAAGGCTTCCATGAAGGCTGGGAACTCACCAAAG | + |
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Preference number: 6 (lower is better) Translates to: ADEKVERLPPPWPRV*KDDKASMKAGNSPK Trigger: CTTTGGTGAGTTCCCAGCCTTCATGGAAGCCTTGTCATCTTTCAATACTCTGGGCCATGGTGGGGGCAGCCGCTCCACCTTTTCATCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061866.6 ENSMUST00000203827.2 |
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| CDS CCA 72 bp | GAAGCAGATGAAAAGGTGGAGCGGCTGCCCCCACCATaGCCCAGAGTATTGAAAGATGACAAGGCTTCCATG | + |
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Preference number: 6 (lower is better) Translates to: EADEKVERLPPP*PRVLKDDKASM Trigger: CATGGAAGCCTTGTCATCTTTCAATACTCTGGGCCATGGTGGGGGCAGCCGCTCCACCTTTTCATCTGCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061866.6 ENSMUST00000203827.2 |
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| CDS CAA 90 bp | GTCACCTTACGGCCGTTCACCATCTCAGTCGATGACATCACTGACTaGAACCCTGAGCTGCCAGAGCCACCAAACGAAGCAGATGAAAAG | + |
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Preference number: 6 (lower is better) Translates to: VTLRPFTISVDDITD*NPELPEPPNEADEK Trigger: CTTTTCATCTGCTTCGTTTGGTGGCTCTGGCAGCTCAGGGTTCAAGTCAGTGATGTCATCGACTGAGATGGTGAACGGCCGTAAGGTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061866.6 ENSMUST00000203827.2 |
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