Pregenerated sensors for DNAJB6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029131Ensembl transcript IDs: ENSMUST00000008733.15, ENSMUST00000012734.10, ENSMUST00000140376.2, ENSMUST00000196528.5, ENSMUST00000198694.5
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCCACGCAGCTAGGCCATACATAGAGCAGCTGTGGGAGGTGAGCTaGACACAGGTATCCTCTCTGTCCCTTCTTGGCAGGCCTGGCACC | + |
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Preference number: 1 (lower is better) Translates to: SHAARPYIEQLWEVS*TQVSSLSLLGRPGT Trigger: GGTGCCAGGCCTGCCAAGAAGGGACAGAGAGGATACCTGTGTCCAGCTCACCTCCCACAGCTGCTCTATGTATGGCCTAGCTGCGTGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| 3UTR CCA 90 bp | GGGTTGGCTTTGAGCCACGCAGCTAGGCCATACATAGAGCAGCTGTaGGAGGTGAGCTGGACACAGGTATCCTCTCTGTCCCTTCTTGGC | + |
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Preference number: 1 (lower is better) Translates to: GLALSHAARPYIEQL*EVSWTQVSSLSLLG Trigger: GCCAAGAAGGGACAGAGAGGATACCTGTGTCCAGCTCACCTCCCACAGCTGCTCTATGTATGGCCTAGCTGCGTGGCTCAAAGCCAACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| 3UTR CCA 90 bp | AAGGAAGTGACACTGCCAAGAGACACGTGCAGCCCAGAAGTGAGGTaGCATCAGAATTCCCTGGTGCTCGATGTAAACCACAGGTTAGGT | + |
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Preference number: 1 (lower is better) Translates to: KEVTLPRDTCSPEVR*HQNSLVLDVNHRLG Trigger: ACCTAACCTGTGGTTTACATCGAGCACCAGGGAATTCTGATGCCACCTCACTTCTGGGCTGCACGTGTCTCTTGGCAGTGTCACTTCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR CCA 90 bp | GTGTGCTCATTGCCAAGGGGACAAAGTTCGAACAATAGATCCTCATaGCCAAAAGGAAGTGACACTGCCAAGAGACACGTGCAGCCCAGA | + |
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Preference number: 1 (lower is better) Translates to: VCSLPRGQSSNNRSS*PKGSDTAKRHVQPR Trigger: TCTGGGCTGCACGTGTCTCTTGGCAGTGTCACTTCCTTTTGGCCATGAGGATCTATTGTTCGAACTTTGTCCCCTTGGCAATGAGCACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR GCA 90 bp | GCGGACCCATCTCAAGCTCACCAACACTGTTCATCGTGTGCTCATTaGCAAGGGGACAAAGTTCGAACAATAGATCCTCATGGCCAAAAG | + |
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Preference number: 1 (lower is better) Translates to: ADPSQAHQHCSSCAH*QGDKVRTIDPHGQK Trigger: CTTTTGGCCATGAGGATCTATTGTTCGAACTTTGTCCCCTTGGCAATGAGCACACGATGAACAGTGTTGGTGAGCTTGAGATGGGTCCGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR CAA 90 bp | GCCCACACCACCTCCCACCAAAACCAAGCAAACTCAGCAAACACTTaGTGGTCACTTCCTCAAAACCCGGGTGGGTCCTGTCCCGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: AHTTSHQNQANSANT*WSLPQNPGGSCPGS Trigger: GGAGCCGGGACAGGACCCACCCGGGTTTTGAGGAAGTGACCACAAAGTGTTTGCTGAGTTTGCTTGGTTTTGGTGGGAGGTGGTGTGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR-3UTR CCA 90 bp | GAACTCACAACGCTTCCCTTCCCCTTTCCACACCGCGGACCCATCTCAAGCTCAAGCCCAGAAGTGAGGTaGCATCAGAATTCCCTGGTG | + |
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Preference number: 2 (lower is better) Translates to: ELTTLPFPFPHRGPISSSSPEVR*HQNSLV Trigger: CACCAGGGAATTCTGATGCCACCTCACTTCTGGGCT...TGAGCTTGAGATGGGTCCGCGGTGTGGAAAGGGGAAGGGAAGCGTTGTGAGTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR-3UTR CCA 90 bp | AAGTGTTGCCAGAGTACCCTGAATCAAAAGCATCCTGACGCCCATGGCTCAAGGTACCTAGCTCCCTACTaGACCCTATGGACTCCTACA | + |
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Preference number: 2 (lower is better) Translates to: KCCQSTLNQKHPDAHGSRYLAPY*TLWTPT Trigger: TGTAGGAGTCCATAGGGTCCAGTAGGGAGCTAGGTA...CCTTGAGCCATGGGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR CAA 90 bp | CGCGGACCCATCTCAAGCTCACCAACACTGTTCATCGTGTGCTCATaGCCAAGGGGACAAAGTTCGAACAATAGATCCTCATGGCCAAAA | + |
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Preference number: 2 (lower is better) Translates to: RGPISSSPTLFIVCS*PRGQSSNNRSSWPK Trigger: TTTTGGCCATGAGGATCTATTGTTCGAACTTTGTCCCCTTGGCAATGAGCACACGATGAACAGTGTTGGTGAGCTTGAGATGGGTCCGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR-3UTR GCA 90 bp | ACTCCTGATAGCCTTAAGTGTTGCCAGAGTACCCTGAATCAAAAGCATCCTGACAGGATGCCGCTGCCATaGACATGCGCAACACACACA | + |
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Preference number: 2 (lower is better) Translates to: TPDSLKCCQSTLNQKHPDRMPLP*TCATHT Trigger: TGTGTGTGTTGCGCATGTGCATGGCAGCGGCATCCT...GTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACACTTAAGGCTATCAGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR-3UTR CCA 90 bp | GAGGGTCACATTTTCACAACACACATTAACACCAATCCATACTCCATAAGTGCCTCCTCAAAACCCGGGTaGGTCCTGTCCCGGCTCCTA | + |
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Preference number: 2 (lower is better) Translates to: EGHIFTTHINTNPYSISASSKPG*VLSRLL Trigger: TAGGAGCCGGGACAGGACCCACCCGGGTTTTGAGGA...GGCACTTATGGAGTATGGATTGGTGTTAATGTGTGTTGTGAAAATGTGACCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR-3UTR GCA 90 bp | CCAAAACCAAGCAAACTCAGCAAACACTTTGTGGTCACTTCCTCAAAACCCGGGGCACGCGCCTCTGTGTaGTGTGTGTTTGTGTTAATA | + |
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Preference number: 2 (lower is better) Translates to: PKPSKLSKHFVVTSSKPGARASV*CVFVLI Trigger: TATTAACACAAACACACAGCACACAGAGGCGCGTGC...CCCGGGTTTTGAGGAAGTGACCACAAAGTGTTTGCTGAGTTTGCTTGGTTTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR-3UTR GCA 90 bp | GCTGGACTCAGTGACGTTTACATTTTATTTACGTCAGTAGCACTAAAATACATTCTGCCAAGAGACACGTaGAGCCCAGAAGTGAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: AGLSDVYILFTSVALKYILPRDT*SPEVRW Trigger: CCACCTCACTTCTGGGCTGCACGTGTCTCTTGGCAG...AATGTATTTTAGTGCTACTGACGTAAATAAAATGTAAACGTCACTGAGTCCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR-3UTR GCA 90 bp | GCTGGACTCAGTGACGTTTACATTTTATTTACGTCAGTAGCACTAAAATACATTCCGCTGCCATGCACATaGGCAACACACACACACACA | + |
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Preference number: 2 (lower is better) Translates to: AGLSDVYILFTSVALKYIPLPCT*ATHTHT Trigger: TGTGTGTGTGTGTGTTGCGCATGTGCATGGCAGCGG...AATGTATTTTAGTGCTACTGACGTAAATAAAATGTAAACGTCACTGAGTCCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR-3UTR GCA 90 bp | GCTGGACTCAGTGACGTTTACATTTTATTTACGTCAGTAGCACTAAAATACATTGCTACCCGGGATTGTTaGCTCTGTCTCCAACACCCT | + |
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Preference number: 2 (lower is better) Translates to: AGLSDVYILFTSVALKYIATRDC*LCLQHP Trigger: AGGGTGTTGGAGACAGAGGCAACAATCCCGGGTAGC...AATGTATTTTAGTGCTACTGACGTAAATAAAATGTAAACGTCACTGAGTCCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR-3UTR GCA 90 bp | GCTGGACTCAGTGACGTTTACATTTTATTTACGTCAGTAGCACTAAAATACATTTCCATACTCCATAAGTaGCCACACCACCTCCCACCA | + |
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Preference number: 2 (lower is better) Translates to: AGLSDVYILFTSVALKYISILHK*PHHLPP Trigger: TGGTGGGAGGTGGTGTGGGCACTTATGGAGTATGGA...AATGTATTTTAGTGCTACTGACGTAAATAAAATGTAAACGTCACTGAGTCCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR-3UTR TCA 90 bp | GCTGGACTCAGTGACGTTTACATTTTATTTACGTCAGTAGCACTAAAATACATTTTCTTGCTTCCTAGCTaGTTATTCTGCACGCGCCTC | + |
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Preference number: 2 (lower is better) Translates to: AGLSDVYILFTSVALKYIFLLPS*LFCTRL Trigger: GAGGCGCGTGCAGAATAATCAGCTAGGAAGCAAGAA...AATGTATTTTAGTGCTACTGACGTAAATAAAATGTAAACGTCACTGAGTCCAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR CCA 72 bp | GGTGAGCTGGACACAGGTATCCTCTCTGTCCCTTCTTaGCAGGCCTGGCACCTACCCTCAGCTCCCCATGCC | + |
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Preference number: 3 (lower is better) Translates to: GELDTGILSVPS*QAWHLPSAPHA Trigger: GGCATGGGGAGCTGAGGGTAGGTGCCAGGCCTGCCAAGAAGGGACAGAGAGGATACCTGTGTCCAGCTCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| 3UTR CCA 72 bp | GCTAGGCCATACATAGAGCAGCTGTGGGAGGTGAGCTaGACACAGGTATCCTCTCTGTCCCTTCTTGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: ARPYIEQLWEVS*TQVSSLSLLGR Trigger: CCTGCCAAGAAGGGACAGAGAGGATACCTGTGTCCAGCTCACCTCCCACAGCTGCTCTATGTATGGCCTAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| 3UTR TCA 72 bp | GAATTCCCTGGTGCTCGATGTAAACCACAGGTTAGGTaGCAGCGCGGCATGGACTATGGGGTCGAAGCTTGT | + |
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Preference number: 3 (lower is better) Translates to: EFPGARCKPQVR*QRGMDYGVEAC Trigger: ACAAGCTTCGACCCCATAGTCCATGCCGCGCTGTCACCTAACCTGTGGTTTACATCGAGCACCAGGGAATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR GCA 72 bp | CATGGCCAAAAGGAAGTGACACTGCCAAGAGACACGTaGAGCCCAGAAGTGAGGTGGCATCAGAATTCCCTG | + |
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Preference number: 3 (lower is better) Translates to: HGQKEVTLPRDT*SPEVRWHQNSL Trigger: CAGGGAATTCTGATGCCACCTCACTTCTGGGCTGCACGTGTCTCTTGGCAGTGTCACTTCCTTTTGGCCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR CCA 72 bp | ACACTGCCAAGAGACACGTGCAGCCCAGAAGTGAGGTaGCATCAGAATTCCCTGGTGCTCGATGTAAACCAC | + |
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Preference number: 3 (lower is better) Translates to: TLPRDTCSPEVR*HQNSLVLDVNH Trigger: GTGGTTTACATCGAGCACCAGGGAATTCTGATGCCACCTCACTTCTGGGCTGCACGTGTCTCTTGGCAGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR CCA 72 bp | TCCCACCAAAACCAAGCAAACTCAGCAAACACTTTGTaGTCACTTCCTCAAAACCCGGGTGGGTCCTGTCCC | + |
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Preference number: 3 (lower is better) Translates to: SHQNQANSANTL*SLPQNPGGSCP Trigger: GGGACAGGACCCACCCGGGTTTTGAGGAAGTGACCACAAAGTGTTTGCTGAGTTTGCTTGGTTTTGGTGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR GCA 72 bp | CTGTGTCACAAACTTATACCAGCTACCCGGGATTGTTaGCTCTGTCTCCAACACCCTTGGATCCTACCGATC | + |
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Preference number: 3 (lower is better) Translates to: LCHKLIPATRDC*LCLQHPWILPI Trigger: GATCGGTAGGATCCAAGGGTGTTGGAGACAGAGGCAACAATCCCGGGTAGCTGGTATAAGTTTGTGACACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR GCA 72 bp | ACTCTATCTGAAGTGACTCCTGATAGCCTTAAGTGTTaGCAGAGTACCCTGAATCAAAAGCATCCTGACGCC | + |
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Preference number: 3 (lower is better) Translates to: TLSEVTPDSLKC*QSTLNQKHPDA Trigger: GGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACACTTAAGGCTATCAGGAGTCACTTCAGATAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR CCA 72 bp | TACAACTACAAATACCTCAGAGCTCAAAGCAGGGCTTaGGCTGCTGAAAAGAATGAGGCAGACCCTTACAAC | + |
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Preference number: 3 (lower is better) Translates to: YNYKYLRAQSRA*AAEKNEADPYN Trigger: GTTGTAAGGGTCTGCCTCATTCTTTTCAGCAGCCCAAGCCCTGCTTTGAGCTCTGAGGTATTTGTAGTTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR GCA 72 bp | TCTCAAGCTCACCAACACTGTTCATCGTGTGCTCATTaGCAAGGGGACAAAGTTCGAACAATAGATCCTCAT | + |
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Preference number: 3 (lower is better) Translates to: SQAHQHCSSCAH*QGDKVRTIDPH Trigger: ATGAGGATCTATTGTTCGAACTTTGTCCCCTTGGCAATGAGCACACGATGAACAGTGTTGGTGAGCTTGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR CCA 72 bp | ATCATCAACACATACCTAGCTCCCTACTGGACCCTATaGACTCCTACAACTACAAATACCTCAGAGCTCAAA | + |
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Preference number: 3 (lower is better) Translates to: IINTYLAPYWTL*TPTTTNTSELK Trigger: TTTGAGCTCTGAGGTATTTGTAGTTGTAGGAGTCCATAGGGTCCAGTAGGGAGCTAGGTATGTGTTGATGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR CCA 90 bp | CCTCTCTGTCCCTTCTTGGCAGGCCTGGCACCTACCCTCAGCTCCCCATGCCCCGGGCCAGAGCTGGTGTaGGTTGGCCTCTCCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: PLCPFLAGLAPTLSSPCPGPELV*VGLSAG Trigger: GCCAGCGGAGAGGCCAACCCACACCAGCTCTGGCCC...GGGGCATGGGGAGCTGAGGGTAGGTGCCAGGCCTGCCAAGAAGGGACAGAGAGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CCA 90 bp | ATCCTCTCTGTCCCTTCTTGGCAGGCCTGGCACCTACCCTCAGCTCCCCATGCCGCCAGGGGCCAGAGCTaGTGTGGGTTGGCCTCTCCG | + |
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Preference number: 4 (lower is better) Translates to: ILSVPSWQAWHLPSAPHAARGQS*CGLASP Trigger: CGGAGAGGCCAACCCACACCAGCTCTGGCCCCTGGC...GGCATGGGGAGCTGAGGGTAGGTGCCAGGCCTGCCAAGAAGGGACAGAGAGGAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CCA 90 bp | ACACAGGTATCCTCTCTGTCCCTTCTTGGCAGGCCTGGCACCTACCCTCAGCTCCCGTTGGGGCAGGCCTaGGTGGCTTCTGTGGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: TQVSSLSLLGRPGTYPQLPLGQA*VASVGG Trigger: CCCGCCCACAGAAGCCACCCAGGCCTGCCCCAACGG...GAGCTGAGGGTAGGTGCCAGGCCTGCCAAGAAGGGACAGAGAGGATACCTGTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CCA 90 bp | TATCCTCTCTGTCCCTTCTTGGCAGGCCTGGCACCTACCCTCAGCTCCCCATGCAGCTGGGGCTGGAGTTaGGGCTGGAGTTGGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: YPLCPFLAGLAPTLSSPCSWGWS*GWSWGW Trigger: CCAGCCCCAACTCCAGCCCCAACTCCAGCCCCAGCT...GCATGGGGAGCTGAGGGTAGGTGCCAGGCCTGCCAAGAAGGGACAGAGAGGATA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CCA 90 bp | GGGTTGGCTTTGAGCCACGCAGCTAGGCCATACATAGAGCAGCTGTGGGAGGTGGAAGGGGCCGGAGTCTaGGCTGGAGCTGGGGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: GLALSHAARPYIEQLWEVEGAGV*AGAGAG Trigger: TCCAGCCCCAGCTCCAGCCCAGACTCCGGCCCCTTC...CACCTCCCACAGCTGCTCTATGTATGGCCTAGCTGCGTGGCTCAAAGCCAACCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CCA 90 bp | GGGTTGGCTTTGAGCCACGCAGCTAGGCCATACATAGAGCAGCTGTGGGAGGTGTGGGGCAGGCCTGGGTaGCTTCTGTGGGCGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: GLALSHAARPYIEQLWEVWGRPG*LLWAGA Trigger: AGCACCCGCCCACAGAAGCCACCCAGGCCTGCCCCA...CACCTCCCACAGCTGCTCTATGTATGGCCTAGCTGCGTGGCTCAAAGCCAACCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR TCA 90 bp | ACACAGGTATCCTCTCTGTCCCTTCTTGGCAGGCCTGGCACCTACCCTCAGCTCTCTGTGGGCGGGTGCTaGCAGAAGGGGCCGGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: TQVSSLSLLGRPGTYPQLSVGGC*QKGPES Trigger: AGACTCCGGCCCCTTCTGTCAGCACCCGCCCACAGA...GAGCTGAGGGTAGGTGCCAGGCCTGCCAAGAAGGGACAGAGAGGATACCTGTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CCA 90 bp | TGCCAGAGTACCCTGAATCAAAAGCATCCTGACGCCCATGGCTCAAGGCACAGCCCGTTGGGGCAGGCCTaGGTGGCTTCTGTGGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: CQSTLNQKHPDAHGSRHSPLGQA*VASVGG Trigger: CCCGCCCACAGAAGCCACCCAGGCCTGCCCCAACGG...GCTGTGCCTTGAGCCATGGGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR CCA 90 bp | TGTTGCCAGAGTACCCTGAATCAAAAGCATCCTGACGCCCATGGCTCAAGGCACGAAGGGGCCGGAGTCTaGGCTGGAGCTGGGGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: CCQSTLNQKHPDAHGSRHEGAGV*AGAGAG Trigger: TCCAGCCCCAGCTCCAGCCCAGACTCCGGCCCCTTC...GTGCCTTGAGCCATGGGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR CCA 90 bp | CCATCTCAAGCTCACCAACACTGTTCATCGTGTGCTCATTGCCAAGGGGACAAAGCCAGGGGCCAGAGCTaGTGTGGGTTGGCCTCTCCG | + |
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Preference number: 4 (lower is better) Translates to: PSQAHQHCSSCAHCQGDKARGQS*CGLASP Trigger: CGGAGAGGCCAACCCACACCAGCTCTGGCCCCTGGC...TTTGTCCCCTTGGCAATGAGCACACGATGAACAGTGTTGGTGAGCTTGAGATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR CCA 90 bp | GGGTTGGCTTTGAGCCACGCAGCTAGGCCATACATAGAGCAGCTGTGGGAGGTGTTGCTGTCCTGGACCTaGGGGCAAAACACTTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: GLALSHAARPYIEQLWEVLLSWT*GQNTLG Trigger: CCCCAAAGTGTTTTGCCCCCAGGTCCAGGACAGCAA...CACCTCCCACAGCTGCTCTATGTATGGCCTAGCTGCGTGGCTCAAAGCCAACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CCA 90 bp | GATAGCCTTAAGTGTTGCCAGAGTACCCTGAATCAAAAGCATCCTGACGCCCATGGGCCAGAGCTGGTGTaGGTTGGCCTCTCCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: DSLKCCQSTLNQKHPDAHGPELV*VGLSAG Trigger: GCCAGCGGAGAGGCCAACCCACACCAGCTCTGGCCC...ATGGGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACACTTAAGGCTATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR CCA 90 bp | CCAAAACCAAGCAAACTCAGCAAACACTTTGTGGTCACTTCCTCAAAACCCGGGTGGGGCAGGCCTGGGTaGCTTCTGTGGGCGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: PKPSKLSKHFVVTSSKPGWGRPG*LLWAGA Trigger: AGCACCCGCCCACAGAAGCCACCCAGGCCTGCCCCA...CCCGGGTTTTGAGGAAGTGACCACAAAGTGTTTGCTGAGTTTGCTTGGTTTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR GCA 90 bp | GGGTTGGCTTTGAGCCACGCAGCTAGGCCATACATAGAGCAGCTGTGGGAGGTGACACCATCTCCCTTCTaGACACCTGCTGAGGTCATA | + |
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Preference number: 4 (lower is better) Translates to: GLALSHAARPYIEQLWEVTPSPF*TPAEVI Trigger: TATGACCTCAGCAGGTGTGCAGAAGGGAGATGGTGT...CACCTCCCACAGCTGCTCTATGTATGGCCTAGCTGCGTGGCTCAAAGCCAACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CCA 90 bp | CCATGGCTCAAGGCACAGCTTACTTTACCTCTAAGTTCCGCTGTACTTAAAACTAGTTGGGGCTGGAGTTaGGGCCAGGGGCCGGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: PWLKAQLTLPLSSAVLKTSWGWS*GQGPGL Trigger: CAGGCCCGGCCCCTGGCCCCAACTCCAGCCCCAACT...AGTTTTAAGTACAGCGGAACTTAGAGGTAAAGTAAGCTGTGCCTTGAGCCATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR CAA 72 bp | AGCTACCCGGGATTGTTGCCTCTGTCTCCAACACCCTaGGATCCTACCGATCCGTGGGCACACGTCCATAAT | + |
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Preference number: 4 (lower is better) Translates to: SYPGLLPLSPTP*DPTDPWAHVHN Trigger: ATTATGGACGTGTGCCCACGGATCGGTAGGATCCAAGGGTGTTGGAGACAGAGGCAACAATCCCGGGTAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR TCA 90 bp | GAGGGTCACATTTTCACAACACACATTAACACCAATCCATACTCCATAAGTGCCTCTGTGGGCGGGTGCTaGCAGAAGGGGCCGGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: EGHIFTTHINTNPYSISASVGGC*QKGPES Trigger: AGACTCCGGCCCCTTCTGTCAGCACCCGCCCACAGA...GGCACTTATGGAGTATGGATTGGTGTTAATGTGTGTTGTGAAAATGTGACCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR TCA 90 bp | ACACAGGTATCCTCTCTGTCCCTTCTTGGCAGGCCTGGCACCTACCCTCAGCTCAAGTTGATATTGATTTaGAGTTGCCCATTCCACTGC | + |
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Preference number: 4 (lower is better) Translates to: TQVSSLSLLGRPGTYPQLKLILI*SCPFHC Trigger: GCAGTGGAATGGGCAACTTCAAATCAATATCAACTT...GAGCTGAGGGTAGGTGCCAGGCCTGCCAAGAAGGGACAGAGAGGATACCTGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CCA 90 bp | AGACAGGGAATGACCACAAGAGAGCTGGACTCAGTGACGTTTACATTTTATTTAAGCTGGGGCTGGAGTTaGGGCTGGAGTTGGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RQGMTTRELDSVTFTFYLSWGWS*GWSWGW Trigger: CCAGCCCCAACTCCAGCCCCAACTCCAGCCCCAGCT...TAAATAAAATGTAAACGTCACTGAGTCCAGCTCTCTTGTGGTCATTCCCTGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| 3UTR CAA 72 bp | ACCTCCCACCAAAACCAAGCAAACTCAGCAAACACTTaGTGGTCACTTCCTCAAAACCCGGGTGGGTCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: TSHQNQANSANT*WSLPQNPGGSC Trigger: ACAGGACCCACCCGGGTTTTGAGGAAGTGACCACAAAGTGTTTGCTGAGTTTGCTTGGTTTTGGTGGGAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR TCA 90 bp | GATAGCCTTAAGTGTTGCCAGAGTACCCTGAATCAAAAGCATCCTGACGCCCATGAAGGTAGAGAAAAATaGGCCGGCACCTCGGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: DSLKCCQSTLNQKHPDAHEGREK*AGTSAS Trigger: AGAAGCCGAGGTGCCGGCTCATTTTTCTCTACCTTC...ATGGGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACACTTAAGGCTATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR GCA 90 bp | TGTTGCCAGAGTACCCTGAATCAAAAGCATCCTGACGCCCATGGCTCAAGGCACGGATTTTTGTCCGGGTaGCATTTAAGTGCCTGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: CCQSTLNQKHPDAHGSRHGFLSG*HLSACF Trigger: AAAACAGGCACTTAAATGGCACCCGGACAAAAATCC...GTGCCTTGAGCCATGGGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000008733.15 ENSMUST00000198694.5 |
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| CDS-3UTR GCA 90 bp | TGTTGCCAGAGTACCCTGAATCAAAAGCATCCTGACGCCCATGGCTCAAGGCACTTCAAGTCCTCTTTCTaGTTCTGCTTCTTCCTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: CCQSTLNQKHPDAHGSRHFKSSF*FCFFLL Trigger: CAAGAGGAAGAAGCAGAAGCAGAAAGAGGACTTGAA...GTGCCTTGAGCCATGGGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR TCA 90 bp | GTAGGGATGAAGAGATGGCCCAGCCATTTAAAGTTGAGCTCACAACCAAAATATGAAGGTAGAGAAAAATaGGCCGGCACCTCGGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: VGMKRWPSHLKLSSQPKYEGREK*AGTSAS Trigger: AGAAGCCGAGGTGCCGGCTCATTTTTCTCTACCTTC...ATATTTTGGTTGTGAGCTCAACTTTAAATGGCTGGGCCATCTCTTCATCCCTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196528.5 |
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| 3UTR CAA 72 bp | ATCTCAAGCTCACCAACACTGTTCATCGTGTGCTCATaGCCAAGGGGACAAAGTTCGAACAATAGATCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: ISSSPTLFIVCS*PRGQSSNNRSS Trigger: TGAGGATCTATTGTTCGAACTTTGTCCCCTTGGCAATGAGCACACGATGAACAGTGTTGGTGAGCTTGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR TCA 90 bp | TGGCTCAAGGCACAGCTTACTTTACCTCTAAGTTCCGCTGTACTTAAAACTGCGAAGTTGATATTGATTTaGAGTTGCCCATTCCACTGC | + |
|
Preference number: 4 (lower is better) Translates to: WLKAQLTLPLSSAVLKTAKLILI*SCPFHC Trigger: GCAGTGGAATGGGCAACTTCAAATCAATATCAACTT...CGCAGTTTTAAGTACAGCGGAACTTAGAGGTAAAGTAAGCTGTGCCTTGAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR TCA 90 bp | GGGATGAAGAGATGGCCCAGCCATTTAAAGTTGAGCTCACAACCAAAATATGAGAAGTTGATATTGATTTaGAGTTGCCCATTCCACTGC | + |
|
Preference number: 4 (lower is better) Translates to: GMKRWPSHLKLSSQPKYEKLILI*SCPFHC Trigger: GCAGTGGAATGGGCAACTTCAAATCAATATCAACTT...CTCATATTTTGGTTGTGAGCTCAACTTTAAATGGCTGGGCCATCTCTTCATCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196528.5 |
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| CDS-3UTR GCA 90 bp | GATTTAGTGCTGGGAAAAATCAGAGTTACAAGGCTCAGGCTGTGTCACAAACTTGGATTTTTGTCCGGGTaGCATTTAAGTGCCTGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: DLVLGKIRVTRLRLCHKLGFLSG*HLSACF Trigger: AAAACAGGCACTTAAATGGCACCCGGACAAAAATCC...AAGTTTGTGACACAGCCTGAGCCTTGTAACTCTGATTTTTCCCAGCACTAAATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR GCA 90 bp | TATAGTAGGGATGAAGAGATGGCCCAGCCATTTAAAGTTGAGCTCACAACCAAAGGATTTTTGTCCGGGTaGCATTTAAGTGCCTGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: YSRDEEMAQPFKVELTTKGFLSG*HLSACF Trigger: AAAACAGGCACTTAAATGGCACCCGGACAAAAATCC...TTTGGTTGTGAGCTCAACTTTAAATGGCTGGGCCATCTCTTCATCCCTACTATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000196528.5 |
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| 3UTR CAA 72 bp | TTTATTTACGTCAGTAGCACTAAAATACATTCCTCCTaGAGGGTCACATTTTCACAACACACATTAACACCA | + |
|
Preference number: 4 (lower is better) Translates to: FIYVSSTKIHSS*RVTFSQHTLTP Trigger: TGGTGTTAATGTGTGTTGTGAAAATGTGACCCTCAAGGAGGAATGTATTTTAGTGCTACTGACGTAAATAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS TCA 90 bp | GCCCACTGTGCTCCTCCTCGCTCAGCAGCTCCTCATACTCCTCGCTaGGCTCCTCCGCATCCCCGAGACTGGCTTCCTCCTCGCTGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: AHCAPPRSAAPHTPR*APPHPRDWLPPRWR Trigger: TCTCCAGCGAGGAGGAAGCCAGTCTCGGGGATGCGGAGGAGCTCAGCGAGGAGTATGAGGAGCTGCTGAGCGAGGAGGAGCACAGTGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012734.10 |
||
| CDS CCA 90 bp | GGGGCCGGGCCAGGGGCCAGAGCTGGTGTGGGTTGGCCTCTCCGCTaGCATTCTTCTGCAAGGGCGTTCTCGTCGGCCACACCATTTATT | + |
|
Preference number: 5 (lower is better) Translates to: GAGPGARAGVGWPLR*HSSARAFSSATPFI Trigger: AATAAATGGTGTGGCCGACGAGAACGCCCTTGCAGAAGAATGCCAGCGGAGAGGCCAACCCACACCAGCTCTGGCCCCTGGCCCGGCCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008733.15 ENSMUST00000140376.2 |
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| CDS TCA 90 bp | CGAGACTGGCTTCCTCCTCGCTGGAGACGAGGTCCAGGTCCTCACTaGGAAGTCCGCCCTGGCCCCAGCTACAGCCTTCACTTGACTCAT | + |
|
Preference number: 5 (lower is better) Translates to: RDWLPPRWRRGPGPH*EVRPGPSYSLHLTH Trigger: ATGAGTCAAGTGAAGGCTGTAGCTGGGGCCAGGGCGGACTTCTCAGTGAGGACCTGGACCTCGTCTCCAGCGAGGAGGAAGCCAGTCTCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012734.10 |
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| CDS-3UTR CAA 90 bp | AGAGCAGCTGTGGGAGGTGAGCTGGACACAGGTATCCTCTCTGTCCCTTCTTGGACCCAAGTTTGGCCGTaGGGGCAGGCCTGGGTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: RAAVGGELDTGILSVPSWTQVWP*GQAWVA Trigger: AGCCACCCAGGCCTGCCCCAACGGCCAAACTTGGGT...CCAAGAAGGGACAGAGAGGATACCTGTGTCCAGCTCACCTCCCACAGCTGCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CAA 90 bp | CCAAAAGGAAGTGACACTGCCAAGAGACACGTGCAGCCCAGAAGTGAGGTGGCAACCCAAGTTTGGCCGTaGGGGCAGGCCTGGGTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: PKGSDTAKRHVQPRSEVATQVWP*GQAWVA Trigger: AGCCACCCAGGCCTGCCCCAACGGCCAAACTTGGGT...TGCCACCTCACTTCTGGGCTGCACGTGTCTCTTGGCAGTGTCACTTCCTTTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR CAA 90 bp | GCTAGGCCATACATAGAGCAGCTGTGGGAGGTGAGCTGGACACAGGTATCCTCTGCCCGACTCCTGTGTTaGCTGTCCTGGACCTGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: ARPYIEQLWEVSWTQVSSARLLC*LSWTWG Trigger: CCCCCAGGTCCAGGACAGCAAACACAGGAGTCGGGC...AGAGGATACCTGTGTCCAGCTCACCTCCCACAGCTGCTCTATGTATGGCCTAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS CCA 90 bp | TCCTCGCTGGAGACGAGGTCCAGGTCCTCACTGAGAAGTCCGCCCTaGCCCCAGCTACAGCCTTCACTTGACTCATCTTCACTAAGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: SSLETRSRSSLRSPP*PQLQPSLDSSSLRS Trigger: GGACCTTAGTGAAGATGAGTCAAGTGAAGGCTGTAGCTGGGGCCAGGGCGGACTTCTCAGTGAGGACCTGGACCTCGTCTCCAGCGAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012734.10 |
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| CDS TCA 90 bp | TTTCTGCTTCTGCTTCTTCCTCTTGCCACCTTCTTTGAGCCCTGCTaGGGTCATAGGGGCATCCCAGTTGCCAGGAACCCGCTGCCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: FLLLLLPLATFFEPC*GHRGIPVARNPLPV Trigger: GACAGGCAGCGGGTTCCTGGCAACTGGGATGCCCCTATGACCTCAGCAGGGCTCAAAGAAGGTGGCAAGAGGAAGAAGCAGAAGCAGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR CAA 90 bp | ATGGGGTTGGCTTTGAGCCACGCAGCTAGGCCATACATAGAGCAGCTGTGGGAGGATATTGATTTGAAGTaGCCCATTCCACTGCCGCCA | + |
|
Preference number: 5 (lower is better) Translates to: MGLALSHAARPYIEQLWEDIDLK*PIPLPP Trigger: TGGCGGCAGTGGAATGGGCAACTTCAAATCAATATC...CTCCCACAGCTGCTCTATGTATGGCCTAGCTGCGTGGCTCAAAGCCAACCCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS-3UTR CAA 90 bp | TGTTGCCAGAGTACCCTGAATCAAAAGCATCCTGACGCCCATGGCTCAAGGCACGATATTGATTTGAAGTaGCCCATTCCACTGCCGCCA | + |
|
Preference number: 5 (lower is better) Translates to: CCQSTLNQKHPDAHGSRHDIDLK*PIPLPP Trigger: TGGCGGCAGTGGAATGGGCAACTTCAAATCAATATC...GTGCCTTGAGCCATGGGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR CAA 90 bp | CCATCTCAAGCTCACCAACACTGTTCATCGTGTGCTCATTGCCAAGGGGACAAACTCTTGCCACCTTCTTaGAGCCCTGCTGAGGTCATA | + |
|
Preference number: 5 (lower is better) Translates to: PSQAHQHCSSCAHCQGDKLLPPS*SPAEVI Trigger: TATGACCTCAGCAGGGCTCAAAGAAGGTGGCAAGAG...TTTGTCCCCTTGGCAATGAGCACACGATGAACAGTGTTGGTGAGCTTGAGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR CAA 90 bp | CCTGATAGCCTTAAGTGTTGCCAGAGTACCCTGAATCAAAAGCATCCTGACGCCTTCTGCTTCTTCCTCTaGCCACCTTCTTTGAGCCCT | + |
|
Preference number: 5 (lower is better) Translates to: PDSLKCCQSTLNQKHPDAFCFFL*PPSLSP Trigger: AGGGCTCAAAGAAGGTGGCAAGAGGAAGAAGCAGAA...GGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACACTTAAGGCTATCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS-3UTR CAA 90 bp | CCTGATAGCCTTAAGTGTTGCCAGAGTACCCTGAATCAAAAGCATCCTGACGCCTTATTTTCAGGATTTTaGTCCGGGTGCCATTTAAGT | + |
|
Preference number: 5 (lower is better) Translates to: PDSLKCCQSTLNQKHPDALFSGF*SGCHLS Trigger: ACTTAAATGGCACCCGGACAAAAATCCTGAAAATAA...GGCGTCAGGATGCTTTTGATTCAGGGTACTCTGGCAACACTTAAGGCTATCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000008733.15 ENSMUST00000198694.5 |
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| CDS-3UTR CAA 90 bp | AAGGCACAGCTTACTTTACCTCTAAGTTCCGCTGTACTTAAAACTGCGCACTGTTTATTTTCAGGATTTTaGTCCGGGTGCCATTTAAGT | + |
|
Preference number: 5 (lower is better) Translates to: KAQLTLPLSSAVLKTAHCLFSGF*SGCHLS Trigger: ACTTAAATGGCACCCGGACAAAAATCCTGAAAATAA...ACAGTGCGCAGTTTTAAGTACAGCGGAACTTAGAGGTAAAGTAAGCTGTGCCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000008733.15 ENSMUST00000198694.5 |
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| CDS-3UTR CAA 90 bp | GGGATGAAGAGATGGCCCAGCCATTTAAAGTTGAGCTCACAACCAAAATATGAGCAAAGCAATCATTTATaGTCAAGGACTTTAACTGCC | + |
|
Preference number: 5 (lower is better) Translates to: GMKRWPSHLKLSSQPKYEQSNHL*SRTLTA Trigger: GGCAGTTAAAGTCCTTGACAATAAATGATTGCTTTG...CTCATATTTTGGTTGTGAGCTCAACTTTAAATGGCTGGGCCATCTCTTCATCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196528.5 |
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| CDS-3UTR CAA 90 bp | AAATATAGTAGGGATGAAGAGATGGCCCAGCCATTTAAAGTTGAGCTCACAACCTTATTTTCAGGATTTTaGTCCGGGTGCCATTTAAGT | + |
|
Preference number: 5 (lower is better) Translates to: KYSRDEEMAQPFKVELTTLFSGF*SGCHLS Trigger: ACTTAAATGGCACCCGGACAAAAATCCTGAAAATAA...GGTTGTGAGCTCAACTTTAAATGGCTGGGCCATCTCTTCATCCCTACTATATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196528.5 |
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| CDS CCA 72 bp | AAGTTTGGCCGTTGGGGCAGGCCTGGGTGGCTTCTGTaGGCGGGTGCTGACAGAAGGGGCCGGAGTCTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: KFGRWGRPGWLL*AGADRRGRSLG Trigger: GCCCAGACTCCGGCCCCTTCTGTCAGCACCCGCCCACAGAAGCCACCCAGGCCTGCCCCAACGGCCAAACTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008733.15 ENSMUST00000140376.2 |
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| CDS CCA 72 bp | CCAGGGGCCAGAGCTGGTGTGGGTTGGCCTCTCCGCTaGCATTCTTCTGCAAGGGCGTTCTCGTCGGCCACA | + |
|
Preference number: 6 (lower is better) Translates to: PGARAGVGWPLR*HSSARAFSSAT Trigger: TGTGGCCGACGAGAACGCCCTTGCAGAAGAATGCCAGCGGAGAGGCCAACCCACACCAGCTCTGGCCCCTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008733.15 ENSMUST00000140376.2 |
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| CDS TCA 72 bp | CTTCCTCCTCGCTGGAGACGAGGTCCAGGTCCTCACTaGGAAGTCCGCCCTGGCCCCAGCTACAGCCTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: LPPRWRRGPGPH*EVRPGPSYSLH Trigger: GTGAAGGCTGTAGCTGGGGCCAGGGCGGACTTCTCAGTGAGGACCTGGACCTCGTCTCCAGCGAGGAGGAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012734.10 |
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| CDS CAA 90 bp | CAGTTGCCAGGAACCCGCTGCCTGTCCTGCTCGTCATCTTCCCAGTaGCTTTTAGACCCAAGTTTGGCCGTTGGGGCAGGCCTGGGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: QLPGTRCLSCSSSSQ*LLDPSLAVGAGLGG Trigger: GCCACCCAGGCCTGCCCCAACGGCCAAACTTGGGTCTAAAAGCAACTGGGAAGATGACGAGCAGGACAGGCAGCGGGTTCCTGGCAACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008733.15 ENSMUST00000140376.2 |
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| CDS TCA 72 bp | GGGGTGTTCCACACCATCTCCCTTCTGCACACCTGCTaGGGTCATAGGGGCATCCCAGTTGCCAGGAACCCG | + |
|
Preference number: 6 (lower is better) Translates to: GVFHTISLLHTC*GHRGIPVARNP Trigger: CGGGTTCCTGGCAACTGGGATGCCCCTATGACCTCAGCAGGTGTGCAGAAGGGAGATGGTGTGGAACACCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140376.2 |
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| CDS CCA 72 bp | ATCTTCCCAGTTGCTTTTAGACCCAAGTTTGGCCGTTaGGGCAGGCCTGGGTGGCTTCTGTGGGCGGGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: IFPVAFRPKFGR*GRPGWLLWAGA Trigger: AGCACCCGCCCACAGAAGCCACCCAGGCCTGCCCCAACGGCCAAACTTGGGTCTAAAAGCAACTGGGAAGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008733.15 ENSMUST00000140376.2 |
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| CDS CAA 90 bp | TTGCCACCTTCTTTGAGCCCTGCTGAGGTCATAGGGGCATCCCAGTaGCCAGGAACCCGCTGCCTGTCCTGCTCGTCATCTTCCCAGTTG | + |
|
Preference number: 6 (lower is better) Translates to: LPPSLSPAEVIGASQ*PGTRCLSCSSSSQL Trigger: CAACTGGGAAGATGACGAGCAGGACAGGCAGCGGGTTCCTGGCAACTGGGATGCCCCTATGACCTCAGCAGGGCTCAAAGAAGGTGGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS TCA 72 bp | CTGCTTCTTCCTCTTGCCACCTTCTTTGAGCCCTGCTaGGGTCATAGGGGCATCCCAGTTGCCAGGAACCCG | + |
|
Preference number: 6 (lower is better) Translates to: LLLPLATFFEPC*GHRGIPVARNP Trigger: CGGGTTCCTGGCAACTGGGATGCCCCTATGACCTCAGCAGGGCTCAAAGAAGGTGGCAAGAGGAAGAAGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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| CDS CCA 72 bp | GAGACGAGGTCCAGGTCCTCACTGAGAAGTCCGCCCTaGCCCCAGCTACAGCCTTCACTTGACTCATCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: ETRSRSSLRSPP*PQLQPSLDSSS Trigger: TGAAGATGAGTCAAGTGAAGGCTGTAGCTGGGGCCAGGGCGGACTTCTCAGTGAGGACCTGGACCTCGTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012734.10 |
||
| CDS CAA 72 bp | TGCTCGTCATCTTCCCAGTTGCTTTTAGACCCAAGTTaGGCCGTTGGGGCAGGCCTGGGTGGCTTCTGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: CSSSSQLLLDPS*AVGAGLGGFCG Trigger: CCCACAGAAGCCACCCAGGCCTGCCCCAACGGCCAAACTTGGGTCTAAAAGCAACTGGGAAGATGACGAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008733.15 ENSMUST00000140376.2 |
||
| CDS GCA 72 bp | AGCTGGTGTGGGTTGGCCTCTCCGCTGGCATTCTTCTaGAAGGGCGTTCTCGTCGGCCACACCATTTATTGT | + |
|
Preference number: 6 (lower is better) Translates to: SWCGLASPLAFF*KGVLVGHTIYC Trigger: ACAATAAATGGTGTGGCCGACGAGAACGCCCTTGCAGAAGAATGCCAGCGGAGAGGCCAACCCACACCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008733.15 ENSMUST00000140376.2 |
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| CDS CAA 90 bp | GACTTCTTCTTCTTCAAGTCCTCTTTCTGCTTCTGCTTCTTCCTCTaGCCACCTTCTTTGAGCCCTGCTGAGGTCATAGGGGCATCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: DFFFFKSSFCFCFFL*PPSLSPAEVIGASQ Trigger: CTGGGATGCCCCTATGACCTCAGCAGGGCTCAAAGAAGGTGGCAAGAGGAAGAAGCAGAAGCAGAAAGAGGACTTGAAGAAGAAGAAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008733.15 |
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