Pregenerated sensors for DNAJB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000081984Ensembl transcript IDs: ENSMUST00000119972.4
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACAGATATTTACAACAGGCATAAAGACCAAGAGAGATCCTATCCCTaGGATCCCAACAATAACAAGAGGCACCGACATGAGCTGCATATA | + |
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Preference number: 1 (lower is better) Translates to: TDIYNRHKDQERSYP*DPNNNKRHRHELHI Trigger: TATATGCAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTCTTGGTCTTTATGCCTGTTGTAAATATCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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| CDS-3UTR CCA 90 bp | GAGAGATCCTATCCCTGCGATCCCAACAATAACAAGAGGCACCGACATGAGCTGGGTACGCCTTGCGGATaGCCTCGGCTGAGGCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: ERSYPCDPNNNKRHRHELGTPCG*PRLRPA Trigger: GGCAGGCCTCAGCCGAGGCCATCCGCAAGGCGTACC...CAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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| CDS-3UTR GCA 90 bp | GAGAGATCCTATCCCTGCGATCCCAACAATAACAAGAGGCACCGACATGAGCTGGCTTGCGGTACGCCTTaGGGATGGCCTCGGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: ERSYPCDPNNNKRHRHELACGTP*GWPRLR Trigger: CCTCAGCCGAGGCCATCCGCAAGGCGTACCGCAAGC...CAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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| CDS-3UTR CCA 90 bp | GAGAGATCCTATCCCTGCGATCCCAACAATAACAAGAGGCACCGACATGAGCTGCACCGCCGCAAGACATaGAGAAAGAAGAAAGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: ERSYPCDPNNNKRHRHELHRRKT*RKKKGP Trigger: CGGGCCTTTCTTCTTTCTCCATGTCTTGCGGCGGTG...CAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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| CDS-3UTR CCA 90 bp | GAGAGATCCTATCCCTGCGATCCCAACAATAACAAGAGGCACCGACATGAGCTGAAGGAGAAGACGTACTaGAAGGCATCGTGGAACGGG | + |
|
Preference number: 4 (lower is better) Translates to: ERSYPCDPNNNKRHRHELKEKTY*KASWNG Trigger: CCCGTTCCACGATGCCTTCCAGTACGTCTTCTCCTT...CAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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| CDS-3UTR CCA 90 bp | GAGAGATCCTATCCCTGCGATCCCAACAATAACAAGAGGCACCGACATGAGCTGGCCACCCCCAAATCCTaGGAATTCGGTAAAGGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: ERSYPCDPNNNKRHRHELATPKS*EFGKGG Trigger: ACCTCCTTTACCGAATTCCCAGGATTTGGGGGTGGC...CAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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| CDS-3UTR GCA 90 bp | GAGAGATCCTATCCCTGCGATCCCAACAATAACAAGAGGCACCGACATGAGCTGTTGATGCGAAGCAGCTaGTCTTTGCCATTAATTATC | + |
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Preference number: 4 (lower is better) Translates to: ERSYPCDPNNNKRHRHELLMRSS*SLPLII Trigger: GATAATTAATGGCAAAGAGCAGCTGCTTCGCATCAA...CAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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| CDS-3UTR CAA 90 bp | GAGAGATCCTATCCCTGCGATCCCAACAATAACAAGAGGCACCGACATGAGCTGAGCTTGCGGTACGCCTaGCGGATGGCCTCGGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: ERSYPCDPNNNKRHRHELSLRYA*RMASAE Trigger: CTCAGCCGAGGCCATCCGCAAGGCGTACCGCAAGCT...CAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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| CDS-3UTR CAA 90 bp | GAGAGATCCTATCCCTGCGATCCCAACAATAACAAGAGGCACCGACATGAGCTGCTCTCGGCCTCCTCCTaGTGCTCGGGGTTCTTGTCC | + |
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Preference number: 5 (lower is better) Translates to: ERSYPCDPNNNKRHRHELLSASS*CSGFLS Trigger: GGACAAGAACCCCGAGCACAAGGAGGAGGCCGAGAG...CAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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| CDS-3UTR CAA 90 bp | GAGAGATCCTATCCCTGCGATCCCAACAATAACAAGAGGCACCGACATGAGCTGCGAAGCAGCTGCTCTTaGCCATTAATTATCAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: ERSYPCDPNNNKRHRHELRSSCS*PLIIRD Trigger: GTCCCTGATAATTAATGGCAAAGAGCAGCTGCTTCG...CAGCTCATGTCGGTGCCTCTTGTTATTGTTGGGATCGCAGGGATAGGATCTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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| CDS CCA 72 bp | AAGACCTCCGCGGGGTCTCGGAAGGAGAAGACGTACTaGAAGGCATCGTGGAACGGGCTGCCCGCCGCGCCG | + |
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Preference number: 6 (lower is better) Translates to: KTSAGSRKEKTY*KASWNGLPAAP Trigger: CGGCGCGGCGGGCAGCCCGTTCCACGATGCCTTCCAGTACGTCTTCTCCTTCCGAGACCCCGCGGAGGTCTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119972.4 |
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