RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DNAJA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031701

Ensembl transcript IDs: ENSMUST00000034138.7

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCATGGATCAAACTGAACCCACAGGCACTGCTGGCTCGGCCACTCTaGATGAGAACCTCTGCTAACCTAAGAATCTTAGTTTTCTACACA +
Preference number: 1 (lower is better)
Translates to: AWIKLNPQALLARPL*MRTSANLRILVFYT
Trigger: TGTGTAGAAAACTAAGATTCTTAGGTTAGCAGAGGTTCTCATGCAGAGTGGCCGAGCCAGCAGTGCCTGTGGGTTCAGTTTGATCCATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR TCA 90 bp ATGACTTGGACCTCAAAGGGAAATGTTTTAAAAACACCCAAGGAGTaGCAAAGTCATCATCAGAGGATGGACACACACCCTTTCATCATC +
Preference number: 1 (lower is better)
Translates to: MTWTSKGNVLKTPKE*QSHHQRMDTHPFII
Trigger: GATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACTTTGTCACTCCTTGGGTGTTTTTAAAACATTTCCCTTTGAGGTCCAAGTCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR-3UTR TCA 90 bp TGGATCAAACTGAACCCACAGGCACTGCTGGCTCGGCCACTCTGCATGAGAACCGCAAAAGCCTCAGGCTaGTGGGTTTTTAGAGGCTGT +
Preference number: 2 (lower is better)
Translates to: WIKLNPQALLARPLCMRTAKASG*WVFRGC
Trigger: ACAGCCTCTAAAAACCCATCAGCCTGAGGCTTTTGC...GGTTCTCATGCAGAGTGGCCGAGCCAGCAGTGCCTGTGGGTTCAGTTTGATCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR-3UTR TCA 90 bp TCATCATCCCATCAGGACAGCTGTAATCCAAGTGAGGCGCTCATCAGAGCATGGGAGCATCAACTGAAGTaGATAAAGCCTGTTTCAACC +
Preference number: 2 (lower is better)
Translates to: SSSHQDSCNPSEALIRAWEHQLK*IKPVST
Trigger: GGTTGAAACAGGCTTTATTCACTTCAGTTGATGCTC...CCATGCTCTGATGAGCGCCTCACTTGGATTACAGCTGTCCTGATGGGATGATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR-3UTR GCA 90 bp CACACCCTTTCATCATCCCATCAGGACAGCTGTAATCCAAGTGAGGCGCTCATCTTCAAACCCATTGTGTaGAAAGCCCATTTTTCCATG +
Preference number: 2 (lower is better)
Translates to: HTLSSSHQDSCNPSEALIFKPIV*KAHFSM
Trigger: CATGGAAAAATGGGCTTTGCACACAATGGGTTTGAA...GATGAGCGCCTCACTTGGATTACAGCTGTCCTGATGGGATGATGAAAGGGTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR-3UTR TCA 90 bp AGTCATCATCAGAGGATGGACACACACCCTTTCATCATCCCATCAGGACAGCTGCTTATAACCCACATGTaGAAGGGAGTCTTATTTCAA +
Preference number: 2 (lower is better)
Translates to: SHHQRMDTHPFIIPSGQLLITHM*KGVLFQ
Trigger: TTGAAATAAGACTCCCTTTCACATGTGGGTTATAAG...CAGCTGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR-3UTR TCA 90 bp CTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTCAAATACAAAACTAGATGTGTACCTGGTATaGCTTGGACCTCAAAGGGAA +
Preference number: 2 (lower is better)
Translates to: LHCLGLKCCGEVTSNTKLDVYLV*LGPQRE
Trigger: TTCCCTTTGAGGTCCAAGTCATACCAGGTACACATC...TAGTTTTGTATTTGAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR-3UTR TCA 90 bp TCACTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTCAAATACAAAAACAGAACAGTCGAAATaGAGATGTAAAGCTCTGTGG +
Preference number: 2 (lower is better)
Translates to: SLHCLGLKCCGEVTSNTKTEQSK*RCKALW
Trigger: CCACAGAGCTTTACATCTTCATTTCGACTGTTCTGT...TTTTGTATTTGAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR-3UTR CCA 90 bp TCACTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTCAAATACAAAAAGGAGTTGGGTAACTTaGATGTTTTTGATGCTACAG +
Preference number: 2 (lower is better)
Translates to: SLHCLGLKCCGEVTSNTKRSWVT*MFLMLQ
Trigger: CTGTAGCATCAAAAACATCCAAGTTACCCAACTCCT...TTTTGTATTTGAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR-3UTR GCA 90 bp TCACTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTCAAATACAAAAGAGTCTTATTTCAAGTaGTTTACTCTGCTACAGAAC +
Preference number: 2 (lower is better)
Translates to: SLHCLGLKCCGEVTSNTKESYFK*FTLLQN
Trigger: GTTCTGTAGCAGAGTAAAGCACTTGAAATAAGACTC...TTTTGTATTTGAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR TCA 72 bp ATCCAAGTGAGGCGCTCATCAGAGCATGGATCAAACTaGACCCACAGGCACTGCTGGCTCGGCCACTCTGCA +
Preference number: 3 (lower is better)
Translates to: IQVRRSSEHGSN*THRHCWLGHSA
Trigger: TGCAGAGTGGCCGAGCCAGCAGTGCCTGTGGGTTCAGTTTGATCCATGCTCTGATGAGCGCCTCACTTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR CCA 72 bp GACAGCTGTAATCCAAGTGAGGCGCTCATCAGAGCATaGATCAAACTGAACCCACAGGCACTGCTGGCTCGG +
Preference number: 3 (lower is better)
Translates to: DSCNPSEALIRA*IKLNPQALLAR
Trigger: CCGAGCCAGCAGTGCCTGTGGGTTCAGTTTGATCCATGCTCTGATGAGCGCCTCACTTGGATTACAGCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR GCA 72 bp AAACTGAACCCACAGGCACTGCTGGCTCGGCCACTCTaGATGAGAACCTCTGCTAACCTAAGAATCTTAGTT +
Preference number: 3 (lower is better)
Translates to: KLNPQALLARPL*MRTSANLRILV
Trigger: AACTAAGATTCTTAGGTTAGCAGAGGTTCTCATGCAGAGTGGCCGAGCCAGCAGTGCCTGTGGGTTCAGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR CCA 72 bp AAACACCCAAGGAGTGACAAAGTCATCATCAGAGGATaGACACACACCCTTTCATCATCCCATCAGGACAGC +
Preference number: 3 (lower is better)
Translates to: KHPRSDKVIIRG*THTLSSSHQDS
Trigger: GCTGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACTTTGTCACTCCTTGGGTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR-3UTR CAA 90 bp TGTTTTAAAAACACCCAAGGAGTGACAAAGTCATCATCAGAGGATGGACACACAGTAACTTGGATGTTTTaGATGCTACAGAGCATCAAC +
Preference number: 3 (lower is better)
Translates to: CFKNTQGVTKSSSEDGHTVTWMF*MLQSIN
Trigger: GTTGATGCTCTGTAGCATCAAAAACATCCAAGTTAC...TGTGTGTCCATCCTCTGATGATGACTTTGTCACTCCTTGGGTGTTTTTAAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR-3UTR CAA 90 bp CTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTCAAATACAAAACTATCTGAATTTCCATTTTaGTCCTGTTGTTCCTTTGAC +
Preference number: 3 (lower is better)
Translates to: LHCLGLKCCGEVTSNTKLSEFPF*SCCSFD
Trigger: GTCAAAGGAACAACAGGACAAAAATGGAAATTCAGA...TAGTTTTGTATTTGAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR GCA 72 bp ATTGGAAAGGCTACAAAGTTTATATTATCACTGCATTaGTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTCA +
Preference number: 3 (lower is better)
Translates to: IGKATKFILSLH*LGLKCCGEVTS
Trigger: TGAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGATAATATAAACTTTGTAGCCTTTCCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR TCA 72 bp TTGGATGTTTTTGATGCTACAGAGCATCAACTGAAGTaGATAAAGCCTGTTTCAACCAACATTAGTGTTATT +
Preference number: 3 (lower is better)
Translates to: LDVFDATEHQLK*IKPVSTNISVI
Trigger: AATAACACTAATGTTGGTTGAAACAGGCTTTATTCACTTCAGTTGATGCTCTGTAGCATCAAAAACATCCAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CCA 90 bp CACACCCTTTCATCATCCCATCAGGACAGCTGTAATCCAAGTGAGGCGCTCATCTCCAGGTTCCACTCCTaGAGCCTGGTCTGCTTCCCC +
Preference number: 4 (lower is better)
Translates to: HTLSSSHQDSCNPSEALISRFHS*SLVCFP
Trigger: GGGGAAGCAGACCAGGCTCCAGGAGTGGAACCTGGA...GATGAGCGCCTCACTTGGATTACAGCTGTCCTGATGGGATGATGAAAGGGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CCA 90 bp GGTACTCCAGCAGCTGGCAAATCCGGCAAATGTGGAAAGAAAACCCACCTGTGCCCAGACTTCCCACCTTaGCCACTGCATGCACTACAG +
Preference number: 4 (lower is better)
Translates to: GTPAAGKSGKCGKKTHLCPDFPP*PLHALQ
Trigger: CTGTAGTGCATGCAGTGGCCAAGGTGGGAAGTCTGG...GCACAGGTGGGTTTTCTTTCCACATTTGCCGGATTTGCCAGCTGCTGGAGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR GCA 90 bp TCAGTCCATCTGGACTTATCAGGTACTCCAGCAGCTGGCAAATCCGGCAAATGTACGGACTGCATCTGCTaGACCATTCCTGGAGCCAGC +
Preference number: 4 (lower is better)
Translates to: SVHLDLSGTPAAGKSGKCTDCIC*TIPGAS
Trigger: GCTGGCTCCAGGAATGGTGCAGCAGATGCAGTCCGT...ACATTTGCCGGATTTGCCAGCTGCTGGAGTACCTGATAAGTCCAGATGGACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR GCA 90 bp CAAAGTCATCATCAGAGGATGGACACACACCCTTTCATCATCCCATCAGGACAGAGAAGATATCATCCATaGCACCGCCTCCGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: QSHHQRMDTHPFIIPSGQRRYHP*HRLRRC
Trigger: GCAGCGGCGGAGGCGGTGGCATGGATGATATCTTCT...CTGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR GCA 90 bp TCATCATCCCATCAGGACAGCTGTAATCCAAGTGAGGCGCTCATCAGAGCATGGTCCCACCTTGGCCACTaGATGCACTACAGAGCACAT +
Preference number: 4 (lower is better)
Translates to: SSSHQDSCNPSEALIRAWSHLGH*MHYRAH
Trigger: ATGTGCTCTGTAGTGCATGCAGTGGCCAAGGTGGGA...CCATGCTCTGATGAGCGCCTCACTTGGATTACAGCTGTCCTGATGGGATGATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR GCA 90 bp CACACCCTTTCATCATCCCATCAGGACAGCTGTAATCCAAGTGAGGCGCTCATCTCCTGGAGCCTGGTCTaGTTCCCCAGTGAACGTAAT +
Preference number: 4 (lower is better)
Translates to: HTLSSSHQDSCNPSEALISWSLV*FPSERN
Trigger: ATTACGTTCACTGGGGAAGCAGACCAGGCTCCAGGA...GATGAGCGCCTCACTTGGATTACAGCTGTCCTGATGGGATGATGAAAGGGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR GCA 90 bp ATCTTAGTTTTCTACACAGAAAACCAAACAGTCCACGCTCACCCAAACTCAGATCACCGCCTCCGCCGCTaGCTTCCCGTAGGCCTTGTT +
Preference number: 4 (lower is better)
Translates to: ILVFYTENQTVHAHPNSDHRLRR*LPVGLV
Trigger: AACAAGGCCTACGGGAAGGCAGCGGCGGAGGCGGTG...ATCTGAGTTTGGGTGAGCGTGGACTGTTTGGTTTTCTGTGTAGAAAACTAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR GCA 90 bp TGGATCAAACTGAACCCACAGGCACTGCTGGCTCGGCCACTCTGCATGAGAACCTCTGTCCATGTTTCATaGCTTTGTCTACATGGACTT +
Preference number: 4 (lower is better)
Translates to: WIKLNPQALLARPLCMRTSVHVS*LCLHGL
Trigger: AAGTCCATGTAGACAAAGGCATGAAACATGGACAGA...GGTTCTCATGCAGAGTGGCCGAGCCAGCAGTGCCTGTGGGTTCAGTTTGATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CCA 90 bp CAAAGTCATCATCAGAGGATGGACACACACCCTTTCATCATCCCATCAGGACAGCTGCTGCACCATTCCTaGAGCCAGCTGTCTGATCAT +
Preference number: 4 (lower is better)
Translates to: QSHHQRMDTHPFIIPSGQLLHHS*SQLSDH
Trigger: ATGATCAGACAGCTGGCTCCAGGAATGGTGCAGCAG...CTGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR TCA 90 bp ACAAAGTCATCATCAGAGGATGGACACACACCCTTTCATCATCCCATCAGGACACAAGCGCTGCATTTCTaGACAGCTCCAGACTTCCCA +
Preference number: 4 (lower is better)
Translates to: TKSSSEDGHTPFHHPIRTQALHF*TAPDFP
Trigger: TGGGAAGTCTGGAGCTGTTCAGAAATGCAGCGCTTG...TGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR TCA 90 bp TGGATCAAACTGAACCCACAGGCACTGCTGGCTCGGCCACTCTGCATGAGAACCTATTTCACCACAATCTaGCGAGCATCAAGATGTTTA +
Preference number: 4 (lower is better)
Translates to: WIKLNPQALLARPLCMRTYFTTI*RASRCL
Trigger: TAAACATCTTGATGCTCGTCAGATTGTGGTGAAATA...GGTTCTCATGCAGAGTGGCCGAGCCAGCAGTGCCTGTGGGTTCAGTTTGATCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR GCA 90 bp GGTACTCCAGCAGCTGGCAAATCCGGCAAATGTGGAAAGAAAACCCACCTGTGCGATACTTTTAGTGGATaGATCATGTCCTCGCCTCTT +
Preference number: 4 (lower is better)
Translates to: GTPAAGKSGKCGKKTHLCDTFSG*IMSSPL
Trigger: AAGAGGCGAGGACATGATGCATCCACTAAAAGTATC...GCACAGGTGGGTTTTCTTTCCACATTTGCCGGATTTGCCAGCTGCTGGAGTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR GCA 90 bp TCAGTCCATCTGGACTTATCAGGTACTCCAGCAGCTGGCAAATCCGGCAAATGTCAGGTCCATGATGGCTaGTACTTTCTTCATCAGAGC +
Preference number: 4 (lower is better)
Translates to: SVHLDLSGTPAAGKSGKCQVHDG*YFLHQS
Trigger: GCTCTGATGAAGAAAGTAGCAGCCATCATGGACCTG...ACATTTGCCGGATTTGCCAGCTGCTGGAGTACCTGATAAGTCCAGATGGACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CCA 90 bp AGTCATCATCAGAGGATGGACACACACCCTTTCATCATCCCATCAGGACAGCTGCAGGGTGGTATTCTTTaGCTAACTTTCGGTATGCCT +
Preference number: 4 (lower is better)
Translates to: SHHQRMDTHPFIIPSGQLQGGIL*LTFGMP
Trigger: AGGCATACCGAAAGTTAGCCAAAGAATACCACCCTG...CAGCTGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR GCA 90 bp TGTTTTAAAAACACCCAAGGAGTGACAAAGTCATCATCAGAGGATGGACACACAGACCCCGACAAGCGCTaGATTTCTGAACAGCTCCAG +
Preference number: 4 (lower is better)
Translates to: CFKNTQGVTKSSSEDGHTDPDKR*ISEQLQ
Trigger: CTGGAGCTGTTCAGAAATGCAGCGCTTGTCGGGGTC...TGTGTGTCCATCCTCTGATGATGACTTTGTCACTCCTTGGGTGTTTTTAAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR TCA 90 bp TCATCATCCCATCAGGACAGCTGTAATCCAAGTGAGGCGCTCATCAGAGCATGGTCGCTTCTCTGGATTTaGCAATACTTCATATGCAAA +
Preference number: 4 (lower is better)
Translates to: SSSHQDSCNPSEALIRAWSLLWI*QYFICK
Trigger: TTTGCATATGAAGTATTGTCAAATCCAGAGAAGCGA...CCATGCTCTGATGAGCGCCTCACTTGGATTACAGCTGTCCTGATGGGATGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR TCA 90 bp TCAGTCCATCTGGACTTATCAGGTACTCCAGCAGCTGGCAAATCCGGCAAATGTTCCACCAAAAATATGTaGGAAGATATCATCCATGCC +
Preference number: 4 (lower is better)
Translates to: SVHLDLSGTPAAGKSGKCSTKNM*EDIIHA
Trigger: GGCATGGATGATATCTTCTCACATATTTTTGGTGGA...ACATTTGCCGGATTTGCCAGCTGCTGGAGTACCTGATAAGTCCAGATGGACTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR TCA 90 bp ACAAAGTCATCATCAGAGGATGGACACACACCCTTTCATCATCCCATCAGGACAGTGCTATCAAATTCCTaGAGCTCCACTTCTTCTGTC +
Preference number: 4 (lower is better)
Translates to: TKSSSEDGHTPFHHPIRTVLSNS*SSTSSV
Trigger: GACAGAAGAAGTGGAGCTTCAGGAATTTGATAGCAC...TGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACTTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CCA 90 bp CAAAGTCATCATCAGAGGATGGACACACACCCTTTCATCATCCCATCAGGACAGTTCAGAAAGTTTGTCTaGGTTGATCCAGTTATTCTC +
Preference number: 4 (lower is better)
Translates to: QSHHQRMDTHPFIIPSGQFRKFV*VDPVIL
Trigger: GAGAATAACTGGATCAACCCAGACAAACTTTCTGAA...CTGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CCA 90 bp ACAAAGTCATCATCAGAGGATGGACACACACCCTTTCATCATCCCATCAGGACAGGATTCTTATCAGGGTaGTATTCTTTGGCTAACTTT +
Preference number: 4 (lower is better)
Translates to: TKSSSEDGHTPFHHPIRTGFLSG*YSLANF
Trigger: AAAGTTAGCCAAAGAATACCACCCTGATAAGAATCC...TGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACTTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR TCA 90 bp ACAAAGTTTATATTATCACTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTTGCACTCCAGGTCCATaGTGGCTGCTACTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: TKFILSLHCLGLKCCGEVCTPGP*WLLLSS
Trigger: TGAAGAAAGTAGCAGCCATCATGGACCTGGAGTGCA...AACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGATAATATAAACTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CCA 90 bp GAAAACCAAACAGTCCACGCTCACCCAAACTCAGATATTCAACTTAATGAGACAAACACGAACACATCCTaGTTCAATTACTTTGCCAGG +
Preference number: 4 (lower is better)
Translates to: ENQTVHAHPNSDIQLNETNTNTS*FNYFAR
Trigger: CCTGGCAAAGTAATTGAACCAGGATGTGTTCGTGTT...TGTCTCATTAAGTTGAATATCTGAGTTTGGGTGAGCGTGGACTGTTTGGTTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR GCA 90 bp ACAAAGTTTATATTATCACTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTCCTCGCCTCTTCTTCTaGCATTTCGACTTCTACTCT +
Preference number: 4 (lower is better)
Translates to: TKFILSLHCLGLKCCGEVPRLFF*HFDFYS
Trigger: AGAGTAGAAGTCGAAATGGCAGAAGAAGAGGCGAGG...AACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGATAATATAAACTTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CCA 90 bp TGTTTTAAAAACACCCAAGGAGTGACAAAGTCATCATCAGAGGATGGACACACATCATTCCCATCTCTCTaGAACACCTCATGTTCTTTT +
Preference number: 4 (lower is better)
Translates to: CFKNTQGVTKSSSEDGHTSFPSL*NTSCSF
Trigger: AAAAGAACATGAGGTGTTCCAGAGAGATGGGAATGA...TGTGTGTCCATCCTCTGATGATGACTTTGTCACTCCTTGGGTGTTTTTAAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CCA 90 bp ACAAAGTTTATATTATCACTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTGGGATTACGATACTGTaGCATTCCTTCACCTCGAAC +
Preference number: 4 (lower is better)
Translates to: TKFILSLHCLGLKCCGEVGITIL*HSFTSN
Trigger: GTTCGAGGTGAAGGAATGCCACAGTATCGTAATCCC...AACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGATAATATAAACTTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CCA 90 bp TCACTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTCAAATACAAAAAACATTAGGAACTTCTaGTCTAGATGGCAGGAGATC +
Preference number: 4 (lower is better)
Translates to: SLHCLGLKCCGEVTSNTKNIRNF*SRWQEI
Trigger: GATCTCCTGCCATCTAGACCAGAAGTTCCTAATGTT...TTTTGTATTTGAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
3UTR CAA 72 bp TATTGGAAAGGCTACAAAGTTTATATTATCACTGCATaGCTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTC +
Preference number: 4 (lower is better)
Translates to: YWKGYKVYIITA*LRLKVLWGSYL
Trigger: GAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGATAATATAAACTTTGTAGCCTTTCCAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS CCA 90 bp TCCATTACAGTCGGAGCACACGGACTGCATCTGCTGCACCATTCCTaGAGCCAGCTGTCTGATCATAATGCGCACACCTCGACCCCGACA +
Preference number: 5 (lower is better)
Translates to: SITVGAHGLHLLHHS*SQLSDHNAHTSTPT
Trigger: TGTCGGGGTCGAGGTGTGCGCATTATGATCAGACAGCTGGCTCCAGGAATGGTGCAGCAGATGCAGTCCGTGTGCTCCGACTGTAATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS GCA 90 bp ACCTCCCCTTCTCCATTACAGTCGGAGCACACGGACTGCATCTGCTaGACCATTCCTGGAGCCAGCTGTCTGATCATAATGCGCACACCT +
Preference number: 5 (lower is better)
Translates to: TSPSPLQSEHTDCIC*TIPGASCLIIMRTP
Trigger: AGGTGTGCGCATTATGATCAGACAGCTGGCTCCAGGAATGGTGCAGCAGATGCAGTCCGTGTGCTCCGACTGTAATGGAGAAGGGGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS GCA 90 bp ATGACCTCCCCTTCTCCATTACAGTCGGAGCACACGGACTGCATCTaGTGCACCATTCCTGGAGCCAGCTGTCTGATCATAATGCGCACA +
Preference number: 5 (lower is better)
Translates to: MTSPSPLQSEHTDCI*CTIPGASCLIIMRT
Trigger: TGTGCGCATTATGATCAGACAGCTGGCTCCAGGAATGGTGCAGCAGATGCAGTCCGTGTGCTCCGACTGTAATGGAGAAGGGGAGGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS GCA 90 bp AGCCAAACAATCCTCCACCAAAAATATGTGAGAAGATATCATCCATaGCACCGCCTCCGCCGCTGCCTTCCCGTAGGCCTTGTTCTCCAT +
Preference number: 5 (lower is better)
Translates to: SQTILHQKYVRRYHP*HRLRRCLPVGLVLH
Trigger: ATGGAGAACAAGGCCTACGGGAAGGCAGCGGCGGAGGCGGTGGCATGGATGATATCTTCTCACATATTTTTGGTGGAGGATTGTTTGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS GCA 90 bp TCATTGATGACCTCCCCTTCTCCATTACAGTCGGAGCACACGGACTaGATCTGCTGCACCATTCCTGGAGCCAGCTGTCTGATCATAATG +
Preference number: 5 (lower is better)
Translates to: SLMTSPSPLQSEHTD*ICCTIPGASCLIIM
Trigger: CATTATGATCAGACAGCTGGCTCCAGGAATGGTGCAGCAGATGCAGTCCGTGTGCTCCGACTGTAATGGAGAAGGGGAGGTCATCAATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CAA 90 bp AGTCATCATCAGAGGATGGACACACACCCTTTCATCATCCCATCAGGACAGCTGTCCAGACTTCCCACCTaGGCCACTGCATGCACTACA +
Preference number: 5 (lower is better)
Translates to: SHHQRMDTHPFIIPSGQLSRLPT*ATACTT
Trigger: TGTAGTGCATGCAGTGGCCAAGGTGGGAAGTCTGGA...CAGCTGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS TCA 90 bp ACTCTGATTGCCCATAAAGCCAAACAATCCTCCACCAAAAATATGTaGGAAGATATCATCCATGCCACCGCCTCCGCCGCTGCCTTCCCG +
Preference number: 5 (lower is better)
Translates to: TLIAHKAKQSSTKNM*EDIIHATASAAAFP
Trigger: CGGGAAGGCAGCGGCGGAGGCGGTGGCATGGATGATATCTTCTCACATATTTTTGGTGGAGGATTGTTTGGCTTTATGGGCAATCAGAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS GCA 90 bp CAAAAATATGTGAGAAGATATCATCCATGCCACCGCCTCCGCCGCTaGCTTCCCGTAGGCCTTGTTCTCCATATCTGTCATACAGCTCTC +
Preference number: 5 (lower is better)
Translates to: QKYVRRYHPCHRLRR*LPVGLVLHICHTAL
Trigger: GAGAGCTGTATGACAGATATGGAGAACAAGGCCTACGGGAAGGCAGCGGCGGAGGCGGTGGCATGGATGATATCTTCTCACATATTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CAA 90 bp TCATCATCCCATCAGGACAGCTGTAATCCAAGTGAGGCGCTCATCAGAGCATGGCTACAGAGCACATTCTaGCTAAGTTGTAGTTTGGTT +
Preference number: 5 (lower is better)
Translates to: SSSHQDSCNPSEALIRAWLQSTF*LSCSLV
Trigger: AACCAAACTACAACTTAGCAAGAATGTGCTCTGTAG...CCATGCTCTGATGAGCGCCTCACTTGGATTACAGCTGTCCTGATGGGATGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CAA 90 bp TCATCATCCCATCAGGACAGCTGTAATCCAAGTGAGGCGCTCATCAGAGCATGGTGGACTTCCAGAATCTaGACTTCTTTGATTACCTTC +
Preference number: 5 (lower is better)
Translates to: SSSHQDSCNPSEALIRAWWTSRI*TSLITF
Trigger: GAAGGTAATCAAAGAAGTCAAGATTCTGGAAGTCCA...CCATGCTCTGATGAGCGCCTCACTTGGATTACAGCTGTCCTGATGGGATGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CAA 90 bp GGTACTCCAGCAGCTGGCAAATCCGGCAAATGTGGAAAGAAAACCCACCTGTGCTCTAATTCAGAAAGTTaGTCTGGGTTGATCCAGTTA +
Preference number: 5 (lower is better)
Translates to: GTPAAGKSGKCGKKTHLCSNSES*SGLIQL
Trigger: TAACTGGATCAACCCAGACAAACTTTCTGAATTAGA...GCACAGGTGGGTTTTCTTTCCACATTTGCCGGATTTGCCAGCTGCTGGAGTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS TCA 90 bp TGCATCATGTCCTCGCCTCTTCTTCTGCCATTTCGACTTCTACTCTaGTTGCCCATAAAGCCAAACAATCCTCCACCAAAAATATGTGAG +
Preference number: 5 (lower is better)
Translates to: CIMSSPLLLPFRLLL*LPIKPNNPPPKICE
Trigger: CTCACATATTTTTGGTGGAGGATTGTTTGGCTTTATGGGCAATCAGAGTAGAAGTCGAAATGGCAGAAGAAGAGGCGAGGACATGATGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CAA 90 bp TGTTTTAAAAACACCCAAGGAGTGACAAAGTCATCATCAGAGGATGGACACACACAGCGGTCTTTTTCATaGATGACCTCCCCTTCTCCA +
Preference number: 5 (lower is better)
Translates to: CFKNTQGVTKSSSEDGHTQRSFS*MTSPSP
Trigger: TGGAGAAGGGGAGGTCATCAATGAAAAAGACCGCTG...TGTGTGTCCATCCTCTGATGATGACTTTGTCACTCCTTGGGTGTTTTTAAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CAA 90 bp ACAAAGTCATCATCAGAGGATGGACACACACCCTTTCATCATCCCATCAGGACACTCGCTTCTCTGGATTaGACAATACTTCATATGCAA +
Preference number: 5 (lower is better)
Translates to: TKSSSEDGHTPFHHPIRTLASLD*TILHMQ
Trigger: TTGCATATGAAGTATTGTCAAATCCAGAGAAGCGAG...TGTCCTGATGGGATGATGAAAGGGTGTGTGTCCATCCTCTGATGATGACTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CAA 90 bp TCACTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTCAAATACAAAATCAGGGTGGTATTCTTaGGCTAACTTTCGGTATGCC +
Preference number: 5 (lower is better)
Translates to: SLHCLGLKCCGEVTSNTKSGWYS*ANFRYA
Trigger: GGCATACCGAAAGTTAGCCAAAGAATACCACCCTGA...TTTTGTATTTGAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CAA 90 bp ATCTTAGTTTTCTACACAGAAAACCAAACAGTCCACGCTCACCCAAACTCAGATTTGCTAAGTTGTAGTTaGGTTGTCTTGCCATTGTAC +
Preference number: 5 (lower is better)
Translates to: ILVFYTENQTVHAHPNSDLLSCS*VVLPLY
Trigger: GTACAATGGCAAGACAACCAAACTACAACTTAGCAA...ATCTGAGTTTGGGTGAGCGTGGACTGTTTGGTTTTCTGTGTAGAAAACTAAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CAA 90 bp TCACTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTCAAATACAAAAGAAAGTTTGTCTGGGTaGATCCAGTTATTCTCAGGA +
Preference number: 5 (lower is better)
Translates to: SLHCLGLKCCGEVTSNTKESLSG*IQLFSG
Trigger: TCCTGAGAATAACTGGATCAACCCAGACAAACTTTC...TTTTGTATTTGAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS-3UTR CAA 90 bp TCACTGCATTGCTTAGGCTTAAAGTGTTGTGGGGAAGTTACCTCAAATACAAAATTGGTTGTCTTGCCATaGTACAGGTCTTCTAAAGAT +
Preference number: 5 (lower is better)
Translates to: SLHCLGLKCCGEVTSNTKLVVLP*YRSSKD
Trigger: ATCTTTAGAAGACCTGTACAATGGCAAGACAACCAA...TTTTGTATTTGAGGTAACTTCCCCACAACACTTTAAGCCTAAGCAATGCAGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS GCA 72 bp ACCTCCCCTTCTCCATTACAGTCGGAGCACACGGACTaGATCTGCTGCACCATTCCTGGAGCCAGCTGTCTG +
Preference number: 6 (lower is better)
Translates to: TSPSPLQSEHTD*ICCTIPGASCL
Trigger: CAGACAGCTGGCTCCAGGAATGGTGCAGCAGATGCAGTCCGTGTGCTCCGACTGTAATGGAGAAGGGGAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS CCA 72 bp GTCGGAGCACACGGACTGCATCTGCTGCACCATTCCTaGAGCCAGCTGTCTGATCATAATGCGCACACCTCG +
Preference number: 6 (lower is better)
Translates to: VGAHGLHLLHHS*SQLSDHNAHTS
Trigger: CGAGGTGTGCGCATTATGATCAGACAGCTGGCTCCAGGAATGGTGCAGCAGATGCAGTCCGTGTGCTCCGAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS GCA 72 bp GTGAGAAGATATCATCCATGCCACCGCCTCCGCCGCTaGCTTCCCGTAGGCCTTGTTCTCCATATCTGTCAT +
Preference number: 6 (lower is better)
Translates to: VRRYHPCHRLRR*LPVGLVLHICH
Trigger: ATGACAGATATGGAGAACAAGGCCTACGGGAAGGCAGCGGCGGAGGCGGTGGCATGGATGATATCTTCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS GCA 72 bp CCTTCTCCATTACAGTCGGAGCACACGGACTGCATCTaGTGCACCATTCCTGGAGCCAGCTGTCTGATCATA +
Preference number: 6 (lower is better)
Translates to: PSPLQSEHTDCI*CTIPGASCLII
Trigger: TATGATCAGACAGCTGGCTCCAGGAATGGTGCAGCAGATGCAGTCCGTGTGCTCCGACTGTAATGGAGAAGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS GCA 72 bp TCTCCATTACAGTCGGAGCACACGGACTGCATCTGCTaGACCATTCCTGGAGCCAGCTGTCTGATCATAATG +
Preference number: 6 (lower is better)
Translates to: SPLQSEHTDCIC*TIPGASCLIIM
Trigger: CATTATGATCAGACAGCTGGCTCCAGGAATGGTGCAGCAGATGCAGTCCGTGTGCTCCGACTGTAATGGAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS TCA 72 bp GCCCATAAAGCCAAACAATCCTCCACCAAAAATATGTaGGAAGATATCATCCATGCCACCGCCTCCGCCGCT +
Preference number: 6 (lower is better)
Translates to: AHKAKQSSTKNM*EDIIHATASAA
Trigger: AGCGGCGGAGGCGGTGGCATGGATGATATCTTCTCACATATTTTTGGTGGAGGATTGTTTGGCTTTATGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS CAA 90 bp CCAGACTTCCCACCTTGGCCACTGCATGCACTACAGAGCACATTCTaGCTAAGTTGTAGTTTGGTTGTCTTGCCATTGTACAGGTCTTCT +
Preference number: 6 (lower is better)
Translates to: PDFPPWPLHALQSTF*LSCSLVVLPLYRSS
Trigger: AGAAGACCTGTACAATGGCAAGACAACCAAACTACAACTTAGCAAGAATGTGCTCTGTAGTGCATGCAGTGGCCAAGGTGGGAAGTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS CAA 72 bp CCACCTTGGCCACTGCATGCACTACAGAGCACATTCTaGCTAAGTTGTAGTTTGGTTGTCTTGCCATTGTAC +
Preference number: 6 (lower is better)
Translates to: PPWPLHALQSTF*LSCSLVVLPLY
Trigger: GTACAATGGCAAGACAACCAAACTACAACTTAGCAAGAATGTGCTCTGTAGTGCATGCAGTGGCCAAGGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS CAA 90 bp TGGCCACTGCATGCACTACAGAGCACATTCTTGCTAAGTTGTAGTTaGGTTGTCTTGCCATTGTACAGGTCTTCTAAAGATACTTTTAGT +
Preference number: 6 (lower is better)
Translates to: WPLHALQSTFLLSCS*VVLPLYRSSKDTFS
Trigger: ACTAAAAGTATCTTTAGAAGACCTGTACAATGGCAAGACAACCAAACTACAACTTAGCAAGAATGTGCTCTGTAGTGCATGCAGTGGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS CAA 90 bp CTACAGAGCACATTCTTGCTAAGTTGTAGTTTGGTTGTCTTGCCATaGTACAGGTCTTCTAAAGATACTTTTAGTGGATGCATCATGTCC +
Preference number: 6 (lower is better)
Translates to: LQSTFLLSCSLVVLP*YRSSKDTFSGCIMS
Trigger: GGACATGATGCATCCACTAAAAGTATCTTTAGAAGACCTGTACAATGGCAAGACAACCAAACTACAACTTAGCAAGAATGTGCTCTGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS CAA 90 bp CATGCACTACAGAGCACATTCTTGCTAAGTTGTAGTTTGGTTGTCTaGCCATTGTACAGGTCTTCTAAAGATACTTTTAGTGGATGCATC +
Preference number: 6 (lower is better)
Translates to: HALQSTFLLSCSLVV*PLYRSSKDTFSGCI
Trigger: GATGCATCCACTAAAAGTATCTTTAGAAGACCTGTACAATGGCAAGACAACCAAACTACAACTTAGCAAGAATGTGCTCTGTAGTGCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS CAA 72 bp CATGCACTACAGAGCACATTCTTGCTAAGTTGTAGTTaGGTTGTCTTGCCATTGTACAGGTCTTCTAAAGAT +
Preference number: 6 (lower is better)
Translates to: HALQSTFLLSCS*VVLPLYRSSKD
Trigger: ATCTTTAGAAGACCTGTACAATGGCAAGACAACCAAACTACAACTTAGCAAGAATGTGCTCTGTAGTGCATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7
CDS GCA 72 bp CATAAAGCTTCAACAAGTCCTATCTTATATGTCATATaGAAATCATTCCCATCTCTCTGGAACACCTCATGT +
Preference number: 6 (lower is better)
Translates to: HKASTSPILYVI*KSFPSLWNTSC
Trigger: ACATGAGGTGTTCCAGAGAGATGGGAATGATTTGCATATGACATATAAGATAGGACTTGTTGAAGCTTTATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034138.7