Pregenerated sensors for DNAJA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028410Ensembl transcript IDs: ENSMUST00000030118.10, ENSMUST00000164233.8
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTTGATCCAATGCAAATCCCATGCCTTATCCCTCAGCCTCTTAAATaGTGGGACTACAGGCATGTTACACATGCCTGGCTGTCTGTCTCA | + |
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Preference number: 1 (lower is better) Translates to: FDPMQIPCLIPQPLK*WDYRHVTHAWLSVS Trigger: TGAGACAGACAGCCAGGCATGTGTAACATGCCTGTAGTCCCAGCATTTAAGAGGCTGAGGGATAAGGCATGGGATTTGCATTGGATCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CCA 90 bp | CCTCAGCCTCTTAAATGCTGGGACTACAGGCATGTTACACATGCCTaGCTGTCTGTCTCAGGTAATACAATTCTACCCGCTATTAGACCT | + |
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Preference number: 1 (lower is better) Translates to: PQPLKCWDYRHVTHA*LSVSGNTILPAIRP Trigger: AGGTCTAATAGCGGGTAGAATTGTATTACCTGAGACAGACAGCCAGGCATGTGTAACATGCCTGTAGTCCCAGCATTTAAGAGGCTGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CCA 90 bp | GTTTTTGGGACTCACTGTAGAGAGATGGGACTTGCTTGGAACTTTTaGGTCCTCTCTCAGTCAGTACTAACCATTGAACCCTCTCTTCAC | + |
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Preference number: 1 (lower is better) Translates to: VFGTHCREMGLAWNF*VLSQSVLTIEPSLH Trigger: GTGAAGAGAGGGTTCAATGGTTAGTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCATCTCTCTACAGTGAGTCCCAAAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR TCA 90 bp | ACTAGTTTCTTAGGTAAGGGATGGTTCAGTTCCTGGCTACTTTTCTaGAGACATGGGTTCAATTCCCAGCACCCACATTGCAGCTCACAA | + |
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Preference number: 1 (lower is better) Translates to: TSFLGKGWFSSWLLF*RHGFNSQHPHCSSQ Trigger: TTGTGAGCTGCAATGTGGGTGCTGGGAATTGAACCCATGTCTTCAGAAAAGTAGCCAGGAACTGAACCATCCCTTACCTAAGAAACTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CCA 90 bp | GCTGTCTTTAGACACACCAGAAGAGGACATTGGATCCATTACAGATaGTTGTGGTTGCTGGGATTTGAACTTAGGACCTTTGGAAGAGCA | + |
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Preference number: 1 (lower is better) Translates to: AVFRHTRRGHWIHYR*LWLLGFELRTFGRA Trigger: TGCTCTTCCAAAGGTCCTAAGTTCAAATCCCAGCAACCACAACCATCTGTAATGGATCCAATGTCCTCTTCTGGTGTGTCTAAAGACAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR TCA 90 bp | CACACATTAAAACCATTCCTAGGCAGTTCCATTCACAGCCTAAAATaGAAACTGAGGACCGAAGGCTGGGAACCCTTTGTATGCCAAGTT | + |
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Preference number: 1 (lower is better) Translates to: HTLKPFLGSSIHSLK*KLRTEGWEPFVCQV Trigger: AACTTGGCATACAAAGGGTTCCCAGCCTTCGGTCCTCAGTTTTCATTTTAGGCTGTGAATGGAACTGCCTAGGAATGGTTTTAATGTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CCA 90 bp | TTTAGACACACCAGAAGAGGACATTGGATCCATTACAGATGGTTGTaGTTGCTGGGATTTGAACTTAGGACCTTTGGAAGAGCAATCACT | + |
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Preference number: 1 (lower is better) Translates to: FRHTRRGHWIHYRWL*LLGFELRTFGRAIT Trigger: AGTGATTGCTCTTCCAAAGGTCCTAAGTTCAAATCCCAGCAACCACAACCATCTGTAATGGATCCAATGTCCTCTTCTGGTGTGTCTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR TCA 90 bp | CTAATAACACAGGCGAAATGTATTATGCCACCTTCTAGTAATGGCTaGGGCAATACAATGCAAAGGCATCACAATTGGTTCACTTCATAT | + |
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Preference number: 1 (lower is better) Translates to: LITQAKCIMPPSSNG*GNTMQRHHNWFTSY Trigger: ATATGAAGTGAACCAATTGTGATGCCTTTGCATTGTATTGCCTCAGCCATTACTAGAAGGTGGCATAATACATTTCGCCTGTGTTATTAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR TCA 90 bp | TGTTTCCCAGAAATGCCAACAGTGTATTTACTCTTCACTAGTTTTTaGATCTTGCAGTCAGTTTTCCTCTCCGTTCAAGCTGACCATATT | + |
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Preference number: 1 (lower is better) Translates to: CFPEMPTVYLLFTSF*ILQSVFLSVQADHI Trigger: AATATGGTCAGCTTGAACGGAGAGGAAAACTGACTGCAAGATTCAAAAACTAGTGAAGAGTAAATACACTGTTGGCATTTCTGGGAAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR GCA 90 bp | CCTCTTAAATGCTGGGACTACAGGCATGTTACACATGCCTGGCTGTCTGTCTCACACAGCAGAAGGGGATaGAATCTAGAAGAGCAAGCC | + |
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Preference number: 2 (lower is better) Translates to: PLKCWDYRHVTHAWLSVSHSRRG*NLEEQA Trigger: GGCTTGCTCTTCTAGATTGCATCCCCTTCTGCTGTG...TGAGACAGACAGCCAGGCATGTGTAACATGCCTGTAGTCCCAGCATTTAAGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR-3UTR TCA 90 bp | CACTCCCCACTGAGGATGTCAAGTAGGGAGAACCTCCTTATATGTTCGGAGAGGTCCTGGCTACTTTTCTaGAGACATGGGTTCAATTCC | + |
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Preference number: 2 (lower is better) Translates to: HSPLRMSSRENLLICSERSWLLF*RHGFNS Trigger: GGAATTGAACCCATGTCTTCAGAAAAGTAGCCAGGA...CCTCTCCGAACATATAAGGAGGTTCTCCCTACTTGACATCCTCAGTGGGGAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCCAGCCTGGTCTACAAATAAGGACAGCCAGGCTGTTAACACAGAGAAACTGACATGTGTTTCAGGGTaGTGTTTCCCAGAAATGCCA | + |
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Preference number: 2 (lower is better) Translates to: RPAWSTNKDSQAVNTEKLTCVSG*CFPEMP Trigger: TGGCATTTCTGGGAAACATCACCCTGAAACACATGT...CAGTTTCTCTGTGTTAACAGCCTGGCTGTCCTTATTTGTAGACCAGGCTGGCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR GCA 90 bp | GAGATGGGACTTGCTTGGAACTTTTGGGTCCTCTCTCAGTCAGTACTAACCATTCACAGCAGAAGGGGATaGAATCTAGAAGAGCAAGCC | + |
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Preference number: 2 (lower is better) Translates to: EMGLAWNFWVLSQSVLTIHSRRG*NLEEQA Trigger: GGCTTGCTCTTCTAGATTGCATCCCCTTCTGCTGTG...AATGGTTAGTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCATCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCCAGCCTGGTCTACAAATAAGGACAGCCAGGCTGTTAACACAGAGAAACTGAAGTTACTTGGGCTTTaGAAGTCACTACACCCAAGC | + |
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Preference number: 2 (lower is better) Translates to: RPAWSTNKDSQAVNTEKLKLLGL*KSLHPS Trigger: GCTTGGGTGTAGTGACTTCCAAAGCCCAAGTAACTT...CAGTTTCTCTGTGTTAACAGCCTGGCTGTCCTTATTTGTAGACCAGGCTGGCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR CAA 90 bp | TCACCCCTCCACGTACAGATCTCATCACTTTCATTTGTAAGTTACTaGGGCTTTGGAAGTCACTACACCCAAGCAAGGGCTTATCATGGT | + |
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Preference number: 2 (lower is better) Translates to: SPLHVQISSLSFVSY*GFGSHYTQARAYHG Trigger: ACCATGATAAGCCCTTGCTTGGGTGTAGTGACTTCCAAAGCCCAAGTAACTTACAAATGAAAGTGATGAGATCTGTACGTGGAGGGGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CAA 90 bp | GTGGCAGACCTAGGTAGACCTGAAAGTCACATATTTTCATCCAGGTaGGTTGAAGTTCCCTTTTCTGACTTGGGCTTAGGCCTATACCTT | + |
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Preference number: 2 (lower is better) Translates to: VADLGRPESHIFSSR*VEVPFSDLGLGLYL Trigger: AAGGTATAGGCCTAAGCCCAAGTCAGAAAAGGGAACTTCAACCAACCTGGATGAAAATATGTGACTTTCAGGTCTACCTAGGTCTGCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CAA 90 bp | AGACACACCAGAAGAGGACATTGGATCCATTACAGATGGTTGTGGTaGCTGGGATTTGAACTTAGGACCTTTGGAAGAGCAATCACTGCT | + |
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Preference number: 2 (lower is better) Translates to: RHTRRGHWIHYRWLW*LGFELRTFGRAITA Trigger: AGCAGTGATTGCTCTTCCAAAGGTCCTAAGTTCAAATCCCAGCAACCACAACCATCTGTAATGGATCCAATGTCCTCTTCTGGTGTGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR TCA 90 bp | AGCCTCCTCATTCTGCTCTTTATGTTCAGCCCTGCTCTTGTATTCCAGTTTGAAACTGGGAAGCAAATCTaGGTTCCAGGTAAGTCTAGG | + |
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Preference number: 2 (lower is better) Translates to: SLLILLFMFSPALVFQFETGKQI*VPGKSR Trigger: CCTAGACTTACCTGGAACTCAGATTTGCTTCCCAGT...TTCAAACTGGAATACAAGAGCAGGGCTGAACATAAAGAGCAGAATGAGGAGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCCAGCCTGGTCTACAAATAAGGACAGCCAGGCTGTTAACACAGAGAAACTGTGGCATGTGTTTTCCTaGTTTAAAATGCTGAACAGC | + |
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Preference number: 2 (lower is better) Translates to: RPAWSTNKDSQAVNTEKLWHVFS*FKMLNS Trigger: GCTGTTCAGCATTTTAAACCAGGAAAACACATGCCA...CAGTTTCTCTGTGTTAACAGCCTGGCTGTCCTTATTTGTAGACCAGGCTGGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR CAA 90 bp | GTCTTTAGACACACCAGAAGAGGACATTGGATCCATTACAGATGGTaGTGGTTGCTGGGATTTGAACTTAGGACCTTTGGAAGAGCAATC | + |
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Preference number: 2 (lower is better) Translates to: VFRHTRRGHWIHYRW*WLLGFELRTFGRAI Trigger: GATTGCTCTTCCAAAGGTCCTAAGTTCAAATCCCAGCAACCACAACCATCTGTAATGGATCCAATGTCCTCTTCTGGTGTGTCTAAAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR CCA 90 bp | CCTTCCCTGGATTATACATGCAAATCACCCCTCCACGTACAGATCTCATCACTTAGCAAGGGCTTATCATaGTTTGAGAAGGGGAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: PSLDYTCKSPLHVQISSLSKGLS*FEKGKK Trigger: CTTTTTCCCCTTCTCAAACCATGATAAGCCCTTGCT...AAGTGATGAGATCTGTACGTGGAGGGGTGATTTGCATGTATAATCCAGGGAAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR-3UTR CCA 90 bp | TTGAGGGGATCTGACAGACACACATTAAAACCATTCCTAGGCAGTTCCATTCACAAGTTACTTGGGCTTTaGAAGTCACTACACCCAAGC | + |
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Preference number: 2 (lower is better) Translates to: LRGSDRHTLKPFLGSSIHKLLGL*KSLHPS Trigger: GCTTGGGTGTAGTGACTTCCAAAGCCCAAGTAACTT...GTGAATGGAACTGCCTAGGAATGGTTTTAATGTGTGTCTGTCAGATCCCCTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR-3UTR CCA 90 bp | TACAGGCATGTTACACATGCCTGGCTGTCTGTCTCAGGTAATACAATTCTACCCAAGGAGCACCTTCCCTaGATTATACATGCAAATCAC | + |
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Preference number: 2 (lower is better) Translates to: YRHVTHAWLSVSGNTILPKEHLP*IIHANH Trigger: GTGATTTGCATGTATAATCCAGGGAAGGTGCTCCTT...GGGTAGAATTGTATTACCTGAGACAGACAGCCAGGCATGTGTAACATGCCTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCCAGCCTGGTCTACAAATAAGGACAGCCAGGCTGTTAACACAGAGAAACTGATGTACCACTATACTTaGGAAAGTCTTAGAAGACCA | + |
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Preference number: 2 (lower is better) Translates to: RPAWSTNKDSQAVNTEKLMYHYT*ESLRRP Trigger: TGGTCTTCTAAGACTTTCCCAAGTATAGTGGTACAT...CAGTTTCTCTGTGTTAACAGCCTGGCTGTCCTTATTTGTAGACCAGGCTGGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR GCA 90 bp | TTGAGGGGATCTGACAGACACACATTAAAACCATTCCTAGGCAGTTCCATTCACGCTGAGGCAATACAATaGAAAGGCATCACAATTGGT | + |
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Preference number: 2 (lower is better) Translates to: LRGSDRHTLKPFLGSSIHAEAIQ*KGITIG Trigger: ACCAATTGTGATGCCTTTGCATTGTATTGCCTCAGC...GTGAATGGAACTGCCTAGGAATGGTTTTAATGTGTGTCTGTCAGATCCCCTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR-3UTR GCA 90 bp | TGTGGTTGCTGGGATTTGAACTTAGGACCTTTGGAAGAGCAATCACTGCTCTTAGCTGAGGCAATACAATaGAAAGGCATCACAATTGGT | + |
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Preference number: 2 (lower is better) Translates to: CGCWDLNLGPLEEQSLLLAEAIQ*KGITIG Trigger: ACCAATTGTGATGCCTTTGCATTGTATTGCCTCAGC...TAAGAGCAGTGATTGCTCTTCCAAAGGTCCTAAGTTCAAATCCCAGCAACCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR GCA 90 bp | AGCCTCCTCATTCTGCTCTTTATGTTCAGCCCTGCTCTTGTATTCCAGTTTGAAGCTCTCTCGATTGCATaGATGTTTTGGTTTGATTGG | + |
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Preference number: 2 (lower is better) Translates to: SLLILLFMFSPALVFQFEALSIA*MFWFDW Trigger: CCAATCAAACCAAAACATGCATGCAATCGAGAGAGC...TTCAAACTGGAATACAAGAGCAGGGCTGAACATAAAGAGCAGAATGAGGAGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR CCA 90 bp | ATGGGACTTGCTTGGAACTTTTGGGTCCTCTCTCAGTCAGTACTAACCATTGAAAGCAAGGGCTTATCATaGTTTGAGAAGGGGAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: MGLAWNFWVLSQSVLTIESKGLS*FEKGKK Trigger: CTTTTTCCCCTTCTCAAACCATGATAAGCCCTTGCT...TTCAATGGTTAGTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR-3UTR CCA 90 bp | ATGGGACTTGCTTGGAACTTTTGGGTCCTCTCTCAGTCAGTACTAACCATTGAACCTGCAGTGACACACTaGAAACACTTTGTAATCAGT | + |
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Preference number: 2 (lower is better) Translates to: MGLAWNFWVLSQSVLTIEPAVTH*KHFVIS Trigger: ACTGATTACAAAGTGTTTCCAGTGTGTCACTGCAGG...TTCAATGGTTAGTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR-3UTR CCA 90 bp | GAGATGGGACTTGCTTGGAACTTTTGGGTCCTCTCTCAGTCAGTACTAACCATTTATTTTCATCCAGGTTaGTTGAAGTTCCCTTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: EMGLAWNFWVLSQSVLTIYFHPG*LKFPFL Trigger: CAGAAAAGGGAACTTCAACCAACCTGGATGAAAATA...AATGGTTAGTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCATCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR-3UTR GCA 90 bp | CCTTCCCTGGATTATACATGCAAATCACCCCTCCACGTACAGATCTCATCACTTATATATCTTAAAAATTaGACAGCAGAAGGGGATGCA | + |
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Preference number: 2 (lower is better) Translates to: PSLDYTCKSPLHVQISSLIYLKN*TAEGDA Trigger: TGCATCCCCTTCTGCTGTGCAATTTTTAAGATATAT...AAGTGATGAGATCTGTACGTGGAGGGGTGATTTGCATGTATAATCCAGGGAAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR-3UTR GCA 90 bp | GCGGAAACAGGAAGACCAAAATTTCAAGGTAGCTCTATAGTAAGTTCAAGGCCAGTCTCACCCCAGATATaGAAGCAAGCATATTTTCAT | + |
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Preference number: 2 (lower is better) Translates to: AETGRPKFQGSSIVSSRPVSPQI*KQAYFH Trigger: ATGAAAATATGCTTGCTTGCATATCTGGGGTGAGAC...TGGCCTTGAACTTACTATAGAGCTACCTTGAAATTTTGGTCTTCCTGTTTCCGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR CCA 90 bp | ATGGGACTTGCTTGGAACTTTTGGGTCCTCTCTCAGTCAGTACTAACCATTGAAAAATTGCAGTTACGTTaGAGCCTAAGTCGAATAGAA | + |
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Preference number: 2 (lower is better) Translates to: MGLAWNFWVLSQSVLTIEKLQLR*SLSRIE Trigger: TTCTATTCGACTTAGGCTCCAACGTAACTGCAATTT...TTCAATGGTTAGTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CAA 90 bp | AGAGTGAAAGCAGCTACATTTCAGTCTCATGATTTACCTAGTAACTaGAGACATTTTCAGGTCTCACCCCAGATATGCAAGCAAGCATAT | + |
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Preference number: 2 (lower is better) Translates to: RVKAATFQSHDLPSN*RHFQVSPQICKQAY Trigger: ATATGCTTGCTTGCATATCTGGGGTGAGACCTGAAAATGTCTCAAGTTACTAGGTAAATCATGAGACTGAAATGTAGCTGCTTTCACTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCTAAGTATGGGACAAACTAGTAGTGTTTTTAGTTGCTGGTATAGCTATGTAATTCACAGCCTAAAATaGAAACTGAGGACCGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: KLSMGQTSSVFSCWYSYVIHSLK*KLRTEG Trigger: GCCTTCGGTCCTCAGTTTTCATTTTAGGCTGTGAAT...TACATAGCTATACCAGCAACTAAAAACACTACTAGTTTGTCCCATACTTAGCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR GCA 90 bp | TCTACAAATAAGGACAGCCAGGCTGTTAACACAGAGAAACTGGTCTTAAAAATCTTTAATTGCAGCACTTaGAAAGTTGAGGCACAATCA | + |
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Preference number: 2 (lower is better) Translates to: STNKDSQAVNTEKLVLKIFNCST*KVEAQS Trigger: TGATTGTGCCTCAACTTTGCAAGTGCTGCAATTAAA...GATTTTTAAGACCAGTTTCTCTGTGTTAACAGCCTGGCTGTCCTTATTTGTAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR TCA 72 bp | TCTGGGCTAAGGCAGCCTGTCCCTGGCACTCCCCACTaGGGATGTCAAGTAGGGAGAACCTCCTTATATGTT | + |
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Preference number: 3 (lower is better) Translates to: SGLRQPVPGTPH*GCQVGRTSLYV Trigger: AACATATAAGGAGGTTCTCCCTACTTGACATCCTCAGTGGGGAGTGCCAGGGACAGGCTGCCTTAGCCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR CCA 72 bp | CAAGTAGGGAGAACCTCCTTATATGTTCGGAGAGGATaGAACTTTGTACAGGCTAGTGGTGCCTGGTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: QVGRTSLYVRRG*NFVQASGAWCQ Trigger: CTGGCACCAGGCACCACTAGCCTGTACAAAGTTCCATCCTCTCCGAACATATAAGGAGGTTCTCCCTACTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR-3UTR CAA 90 bp | CCTCTTAAATGCTGGGACTACAGGCATGTTACACATGCCTGGCTGTCTGTCTCATTCCCAGCACCCACATaGCAGCTCACAACTGTAACT | + |
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Preference number: 3 (lower is better) Translates to: PLKCWDYRHVTHAWLSVSFPAPT*QLTTVT Trigger: AGTTACAGTTGTGAGCTGCAATGTGGGTGCTGGGAA...TGAGACAGACAGCCAGGCATGTGTAACATGCCTGTAGTCCCAGCATTTAAGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR GCA 72 bp | ATGCAAATCCCATGCCTTATCCCTCAGCCTCTTAAATaGTGGGACTACAGGCATGTTACACATGCCTGGCTG | + |
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Preference number: 3 (lower is better) Translates to: MQIPCLIPQPLK*WDYRHVTHAWL Trigger: CAGCCAGGCATGTGTAACATGCCTGTAGTCCCAGCATTTAAGAGGCTGAGGGATAAGGCATGGGATTTGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CCA 72 bp | GGGATGGTTCAGTTCCTGGCTACTTTTCTGAAGACATaGGTTCAATTCCCAGCACCCACATTGCAGCTCACA | + |
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Preference number: 3 (lower is better) Translates to: GMVQFLATFLKT*VQFPAPTLQLT Trigger: TGTGAGCTGCAATGTGGGTGCTGGGAATTGAACCCATGTCTTCAGAAAAGTAGCCAGGAACTGAACCATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CCA 72 bp | AGCCCTTGTCCTTGTCTGCCCCCAAGAGTCAGAGCTTaGCAAATTAGACATACGCCTTTAATTGCAGCACTT | + |
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Preference number: 3 (lower is better) Translates to: SPCPCLPPRVRA*QIRHTPLIAAL Trigger: AAGTGCTGCAATTAAAGGCGTATGTCTAATTTGCCAAGCTCTGACTCTTGGGGGCAGACAAGGACAAGGGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
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| 3UTR GCA 72 bp | GGAACCCTTTGTATGCCAAGTTTTGAGTATTCTGCATaGCTAGTGCCTGAAGTCGGTTTTTGGGACTCACTG | + |
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Preference number: 3 (lower is better) Translates to: GTLCMPSFEYSA*LVPEVGFWDSL Trigger: CAGTGAGTCCCAAAAACCGACTTCAGGCACTAGGCATGCAGAATACTCAAAACTTGGCATACAAAGGGTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CCA 72 bp | ACTCACTGTAGAGAGATGGGACTTGCTTGGAACTTTTaGGTCCTCTCTCAGTCAGTACTAACCATTGAACCC | + |
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Preference number: 3 (lower is better) Translates to: THCREMGLAWNF*VLSQSVLTIEP Trigger: GGGTTCAATGGTTAGTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCATCTCTCTACAGTGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CCA 72 bp | GTTTTTGGGACTCACTGTAGAGAGATGGGACTTGCTTaGAACTTTTGGGTCCTCTCTCAGTCAGTACTAACC | + |
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Preference number: 3 (lower is better) Translates to: VFGTHCREMGLA*NFWVLSQSVLT Trigger: GGTTAGTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCATCTCTCTACAGTGAGTCCCAAAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CCA 72 bp | CTTAAATGCTGGGACTACAGGCATGTTACACATGCCTaGCTGTCTGTCTCAGGTAATACAATTCTACCCGCT | + |
|
Preference number: 3 (lower is better) Translates to: LKCWDYRHVTHA*LSVSGNTILPA Trigger: AGCGGGTAGAATTGTATTACCTGAGACAGACAGCCAGGCATGTGTAACATGCCTGTAGTCCCAGCATTTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR TCA 72 bp | AAACCATTCCTAGGCAGTTCCATTCACAGCCTAAAATaGAAACTGAGGACCGAAGGCTGGGAACCCTTTGTA | + |
|
Preference number: 3 (lower is better) Translates to: KPFLGSSIHSLK*KLRTEGWEPFV Trigger: TACAAAGGGTTCCCAGCCTTCGGTCCTCAGTTTTCATTTTAGGCTGTGAATGGAACTGCCTAGGAATGGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| 3UTR TCA 72 bp | GTGATGCCTTTAATACCAGCAACTGGGAAGCAAATCTaGGTTCCAGGTAAGTCTAGGGGTCTTAACAACAAC | + |
|
Preference number: 3 (lower is better) Translates to: VMPLIPATGKQI*VPGKSRGLNNN Trigger: GTTGTTGTTAAGACCCCTAGACTTACCTGGAACTCAGATTTGCTTCCCAGTTGCTGGTATTAAAGGCATCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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| 3UTR CCA 72 bp | AGACACACCAGAAGAGGACATTGGATCCATTACAGATaGTTGTGGTTGCTGGGATTTGAACTTAGGACCTTT | + |
|
Preference number: 3 (lower is better) Translates to: RHTRRGHWIHYR*LWLLGFELRTF Trigger: AAAGGTCCTAAGTTCAAATCCCAGCAACCACAACCATCTGTAATGGATCCAATGTCCTCTTCTGGTGTGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR CCA 72 bp | ACTGTTGCTGTCTTTAGACACACCAGAAGAGGACATTaGATCCATTACAGATGGTTGTGGTTGCTGGGATTT | + |
|
Preference number: 3 (lower is better) Translates to: TVAVFRHTRRGH*IHYRWLWLLGF Trigger: AAATCCCAGCAACCACAACCATCTGTAATGGATCCAATGTCCTCTTCTGGTGTGTCTAAAGACAGCAACAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR TCA 72 bp | CAGGCGAAATGTATTATGCCACCTTCTAGTAATGGCTaGGGCAATACAATGCAAAGGCATCACAATTGGTTC | + |
|
Preference number: 3 (lower is better) Translates to: QAKCIMPPSSNG*GNTMQRHHNWF Trigger: GAACCAATTGTGATGCCTTTGCATTGTATTGCCTCAGCCATTACTAGAAGGTGGCATAATACATTTCGCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| 3UTR CCA 72 bp | GATCTCATCACTTTCATTTGTAAGTTACTTGGGCTTTaGAAGTCACTACACCCAAGCAAGGGCTTATCATGG | + |
|
Preference number: 3 (lower is better) Translates to: DLITFICKLLGL*KSLHPSKGLSW Trigger: CCATGATAAGCCCTTGCTTGGGTGTAGTGACTTCCAAAGCCCAAGTAACTTACAAATGAAAGTGATGAGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| 3UTR CCA 72 bp | ATTGAGAAAGTCATTACCAAATTTCACATTTGGGGCTaGGGCTGTAGCTCTCTCGATTGCATGCATGTTTTG | + |
|
Preference number: 3 (lower is better) Translates to: IEKVITKFHIWG*GCSSLDCMHVL Trigger: CAAAACATGCATGCAATCGAGAGAGCTACAGCCCCAGCCCCAAATGTGAAATTTGGTAATGACTTTCTCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR-3UTR CAA 90 bp | TTGAGGGGATCTGACAGACACACATTAAAACCATTCCTAGGCAGTTCCATTCACTCATTTGTAAGTTACTaGGGCTTTGGAAGTCACTAC | + |
|
Preference number: 3 (lower is better) Translates to: LRGSDRHTLKPFLGSSIHSFVSY*GFGSHY Trigger: GTAGTGACTTCCAAAGCCCAAGTAACTTACAAATGA...GTGAATGGAACTGCCTAGGAATGGTTTTAATGTGTGTCTGTCAGATCCCCTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| 3UTR CCA 72 bp | CTTTTTATTGAGAAAGTCATTACCAAATTTCACATTTaGGGCTGGGGCTGTAGCTCTCTCGATTGCATGCAT | + |
|
Preference number: 3 (lower is better) Translates to: LFIEKVITKFHI*GWGCSSLDCMH Trigger: ATGCATGCAATCGAGAGAGCTACAGCCCCAGCCCCAAATGTGAAATTTGGTAATGACTTTCTCAATAAAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR TCA 72 bp | TTCCTCTCCGTTCAAGCTGACCATATTAAGAGAGAGTaGAAGCAGCTACATTTCAGTCTCATGATTTACCTA | + |
|
Preference number: 3 (lower is better) Translates to: FLSVQADHIKRE*KQLHFSLMIYL Trigger: TAGGTAAATCATGAGACTGAAATGTAGCTGCTTTCACTCTCTCTTAATATGGTCAGCTTGAACGGAGAGGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR GCA 72 bp | CAACAGTGTATTTACTCTTCACTAGTTTTTGAATCTTaGAGTCAGTTTTCCTCTCCGTTCAAGCTGACCATA | + |
|
Preference number: 3 (lower is better) Translates to: QQCIYSSLVFES*SQFSSPFKLTI Trigger: TATGGTCAGCTTGAACGGAGAGGAAAACTGACTGCAAGATTCAAAAACTAGTGAAGAGTAAATACACTGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR GCA 72 bp | AACAAGTTAGAGGGTTTATGGGATTTGATGCTTGGGTaGCTTTCTTTCCTATGTAGAGGAGGATTTAATACT | + |
|
Preference number: 3 (lower is better) Translates to: NKLEGLWDLMLG*LSFLCRGGFNT Trigger: AGTATTAAATCCTCCTCTACATAGGAAAGAAAGGCACCCAAGCATCAAATCCCATAAACCCTCTAACTTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR GCA 72 bp | AAGCTAAGTATGGGACAAACTAGTAGTGTTTTTAGTTaGTGGTATAGCTATGTACCACTATACTTGGGAAAG | + |
|
Preference number: 3 (lower is better) Translates to: KLSMGQTSSVFS*WYSYVPLYLGK Trigger: CTTTCCCAAGTATAGTGGTACATAGCTATACCAGCAACTAAAAACACTACTAGTTTGTCCCATACTTAGCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR GCA 72 bp | GGCTTAAAAATTTTAAGGATTATTTATGCATGTGAGTaGACTGTTGCTGTCTTTAGACACACCAGAAGAGGA | + |
|
Preference number: 3 (lower is better) Translates to: GLKILRIIYACE*TVAVFRHTRRG Trigger: TCCTCTTCTGGTGTGTCTAAAGACAGCAACAGTGCACTCACATGCATAAATAATCCTTAAAATTTTTAAGCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR CCA 72 bp | CTAAGTATGGGACAAACTAGTAGTGTTTTTAGTTGCTaGTATAGCTATGTACCACTATACTTGGGAAAGTCT | + |
|
Preference number: 3 (lower is better) Translates to: LSMGQTSSVFSC*YSYVPLYLGKS Trigger: AGACTTTCCCAAGTATAGTGGTACATAGCTATACCAGCAACTAAAAACACTACTAGTTTGTCCCATACTTAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR CCA 72 bp | GATCTTGTCTCAAAACAAAACAGGAACTATACAATGTaGTATTCCAGTAAGCTAAGTATGGGACAAACTAGT | + |
|
Preference number: 3 (lower is better) Translates to: DLVSKQNRNYTM*YSSKLSMGQTS Trigger: ACTAGTTTGTCCCATACTTAGCTTACTGGAATACCACATTGTATAGTTCCTGTTTTGTTTTGAGACAAGATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| CDS-3UTR CCA 90 bp | CTGAGGACCGAAGGCTGGGAACCCTTTGTATGCCAAGTTTTGAGTATTCTGCATCTGTCCCCCGGCAGTTaGGACAGCACTCTACTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LRTEGWEPFVCQVLSILHLSPGS*DSTLLL Trigger: GAGCAGTAGAGTGCTGTCCCAACTGCCGGGGGACAG...ATGCAGAATACTCAAAACTTGGCATACAAAGGGTTCCCAGCCTTCGGTCCTCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| CDS-3UTR GCA 90 bp | CCTCTTAAATGCTGGGACTACAGGCATGTTACACATGCCTGGCTGTCTGTCTCAGCCAAAACCACCACCTaGTCCGCCCTCTTTAATCGC | + |
|
Preference number: 4 (lower is better) Translates to: PLKCWDYRHVTHAWLSVSAKTTT*SALFNR Trigger: GCGATTAAAGAGGGCGGAGCAGGTGGTGGTTTTGGC...TGAGACAGACAGCCAGGCATGTGTAACATGCCTGTAGTCCCAGCATTTAAGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| CDS-3UTR CCA 90 bp | ATGCTGAACAGCAAGCCAGAAGTGATGCCTTTAATACCAGCAACTGGGAAGCAACTGTCCCCCGGCAGTTaGGACAGCACTCTACTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: MLNSKPEVMPLIPATGKQLSPGS*DSTLLL Trigger: GAGCAGTAGAGTGCTGTCCCAACTGCCGGGGGACAG...TTGCTTCCCAGTTGCTGGTATTAAAGGCATCACTTCTGGCTTGCTGTTCAGCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR CAA 72 bp | AGTCGGTTTTTGGGACTCACTGTAGAGAGATGGGACTaGCTTGGAACTTTTGGGTCCTCTCTCAGTCAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: SRFLGLTVERWD*LGTFGSSLSQY Trigger: GTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCATCTCTCTACAGTGAGTCCCAAAAACCGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| CDS-3UTR TCA 90 bp | TACAGGCATGTTACACATGCCTGGCTGTCTGTCTCAGGTAATACAATTCTACCCAAAGATATCCATGGGTaGGCCAAAACCACCACCTGC | + |
|
Preference number: 4 (lower is better) Translates to: YRHVTHAWLSVSGNTILPKDIHG*AKTTTC Trigger: GCAGGTGGTGGTTTTGGCTCACCCATGGATATCTTT...GGGTAGAATTGTATTACCTGAGACAGACAGCCAGGCATGTGTAACATGCCTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| CDS-3UTR TCA 90 bp | GAGATGGGACTTGCTTGGAACTTTTGGGTCCTCTCTCAGTCAGTACTAACCATTAAAGATATCCATGGGTaGGCCAAAACCACCACCTGC | + |
|
Preference number: 4 (lower is better) Translates to: EMGLAWNFWVLSQSVLTIKDIHG*AKTTTC Trigger: GCAGGTGGTGGTTTTGGCTCACCCATGGATATCTTT...AATGGTTAGTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCATCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| 3UTR CAA 72 bp | GATGGTTGTGGTTGCTGGGATTTGAACTTAGGACCTTaGGAAGAGCAATCACTGCTCTTAATCACTGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: DGCGCWDLNLGP*EEQSLLLITEP Trigger: TGGCTCAGTGATTAAGAGCAGTGATTGCTCTTCCAAAGGTCCTAAGTTCAAATCCCAGCAACCACAACCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR CAA 72 bp | CACACCAGAAGAGGACATTGGATCCATTACAGATGGTaGTGGTTGCTGGGATTTGAACTTAGGACCTTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: HTRRGHWIHYRW*WLLGFELRTFG Trigger: TCCAAAGGTCCTAAGTTCAAATCCCAGCAACCACAACCATCTGTAATGGATCCAATGTCCTCTTCTGGTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| CDS-3UTR GCA 90 bp | ATGGGACTTGCTTGGAACTTTTGGGTCCTCTCTCAGTCAGTACTAACCATTGAACCCTCTTTAATCGCCTaGTCCCCTCCTTTATCATAT | + |
|
Preference number: 4 (lower is better) Translates to: MGLAWNFWVLSQSVLTIEPSLIA*SPPLSY Trigger: ATATGATAAAGGAGGGGAGCAGGCGATTAAAGAGGG...TTCAATGGTTAGTACTGACTGAGAGAGGACCCAAAAGTTCCAAGCAAGTCCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| CDS-3UTR GCA 90 bp | GAAGTTCCCTTTTCTGACTTGGGCTTAGGCCTATACCTTTATTTCTTATATATGGCCAAAACCACCACCTaGTCCGCCCTCTTTAATCGC | + |
|
Preference number: 4 (lower is better) Translates to: EVPFSDLGLGLYLYFLYMAKTTT*SALFNR Trigger: GCGATTAAAGAGGGCGGAGCAGGTGGTGGTTTTGGC...CATATATAAGAAATAAAGGTATAGGCCTAAGCCCAAGTCAGAAAAGGGAACTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| 3UTR CAA 72 bp | CTAGGTAGACCTGAAAGTCACATATTTTCATCCAGGTaGGTTGAAGTTCCCTTTTCTGACTTGGGCTTAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LGRPESHIFSSR*VEVPFSDLGLG Trigger: GCCTAAGCCCAAGTCAGAAAAGGGAACTTCAACCAACCTGGATGAAAATATGTGACTTTCAGGTCTACCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| 3UTR CAA 72 bp | AGAAGAGGACATTGGATCCATTACAGATGGTTGTGGTaGCTGGGATTTGAACTTAGGACCTTTGGAAGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RRGHWIHYRWLW*LGFELRTFGRA Trigger: TGCTCTTCCAAAGGTCCTAAGTTCAAATCCCAGCAACCACAACCATCTGTAATGGATCCAATGTCCTCTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| CDS-3UTR CCA 90 bp | AGCCTCCTCATTCTGCTCTTTATGTTCAGCCCTGCTCTTGTATTCCAGTTTGAATTTTTCAATTCTTCCTaGGTGGCATTGGGTTTTACC | + |
|
Preference number: 4 (lower is better) Translates to: SLLILLFMFSPALVFQFEFFNSS*VALGFT Trigger: GGTAAAACCCAATGCCACCCAGGAAGAATTGAAAAA...TTCAAACTGGAATACAAGAGCAGGGCTGAACATAAAGAGCAGAATGAGGAGGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| CDS-3UTR CCA 90 bp | ATTTGTAAGTTACTTGGGCTTTGGAAGTCACTACACCCAAGCAAGGGCTTATCAGTAGATATTGGCTTTTaGAAGCCGCACAATGCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: ICKLLGLWKSLHPSKGLSVDIGF*KPHNAS Trigger: TGAAGCATTGTGCGGCTTCCAAAAGCCAATATCTAC...TGATAAGCCCTTGCTTGGGTGTAGTGACTTCCAAAGCCCAAGTAACTTACAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| 3UTR CAA 72 bp | GCAGCTACATTTCAGTCTCATGATTTACCTAGTAACTaGAGACATTTTCAGGTCTCACCCCAGATATGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: AATFQSHDLPSN*RHFQVSPQICK Trigger: CTTGCATATCTGGGGTGAGACCTGAAAATGTCTCAAGTTACTAGGTAAATCATGAGACTGAAATGTAGCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR CAA 72 bp | TATTCCAGTTTGAACAAGTTAGAGGGTTTATGGGATTaGATGCTTGGGTGCCTTTCTTTCCTATGTAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: YSSLNKLEGLWD*MLGCLSFLCRG Trigger: TCCTCTACATAGGAAAGAAAGGCACCCAAGCATCAAATCCCATAAACCCTCTAACTTGTTCAAACTGGAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| 3UTR CAA 72 bp | TGCTCTTTATGTTCAGCCCTGCTCTTGTATTCCAGTTaGAACAAGTTAGAGGGTTTATGGGATTTGATGCTT | + |
|
Preference number: 4 (lower is better) Translates to: CSLCSALLLYSS*NKLEGLWDLML Trigger: AAGCATCAAATCCCATAAACCCTCTAACTTGTTCAAACTGGAATACAAGAGCAGGGCTGAACATAAAGAGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| CDS-3UTR CCA 90 bp | GAAGTTCCCTTTTCTGACTTGGGCTTAGGCCTATACCTTTATTTCTTATATATGTTTTTCAATTCTTCCTaGGTGGCATTGGGTTTTACC | + |
|
Preference number: 4 (lower is better) Translates to: EVPFSDLGLGLYLYFLYMFFNSS*VALGFT Trigger: GGTAAAACCCAATGCCACCCAGGAAGAATTGAAAAA...CATATATAAGAAATAAAGGTATAGGCCTAAGCCCAAGTCAGAAAAGGGAACTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| 3UTR CAA 72 bp | TTTTCATCCAGGTTGGTTGAAGTTCCCTTTTCTGACTaGGGCTTAGGCCTATACCTTTATTTCTTATATATG | + |
|
Preference number: 4 (lower is better) Translates to: FSSRLVEVPFSD*GLGLYLYFLYM Trigger: CATATATAAGAAATAAAGGTATAGGCCTAAGCCCAAGTCAGAAAAGGGAACTTCAACCAACCTGGATGAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| CDS-3UTR CAA 90 bp | GCAGACCTAGGTAGACCTGAAAGTCACATATTTTCATCCAGGTTGGTTGAAGTTCCTGTCCCCCGGCAGTaGGGACAGCACTCTACTGCT | + |
|
Preference number: 5 (lower is better) Translates to: ADLGRPESHIFSSRLVEVPVPRQ*GQHSTA Trigger: AGCAGTAGAGTGCTGTCCCAACTGCCGGGGGACAGG...AACTTCAACCAACCTGGATGAAAATATGTGACTTTCAGGTCTACCTAGGTCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| CDS-3UTR CAA 90 bp | AAATTTCTGACTAGAAGAGATGTGGCAGACCTAGGTAGACCTGAAAGTCACATACCTGTCCCCCGGCAGTaGGGACAGCACTCTACTGCT | + |
|
Preference number: 5 (lower is better) Translates to: KFLTRRDVADLGRPESHIPVPRQ*GQHSTA Trigger: AGCAGTAGAGTGCTGTCCCAACTGCCGGGGGACAGG...TATGTGACTTTCAGGTCTACCTAGGTCTGCCACATCTCTTCTAGTCAGAAATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
||
| CDS-3UTR CAA 90 bp | TGTGGTTGCTGGGATTTGAACTTAGGACCTTTGGAAGAGCAATCACTGCTCTTAAGTAGATATTGGCTTTaGGAAGCCGCACAATGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: CGCWDLNLGPLEEQSLLLSRYWL*EAAQCF Trigger: GAAGCATTGTGCGGCTTCCAAAAGCCAATATCTACT...TAAGAGCAGTGATTGCTCTTCCAAAGGTCCTAAGTTCAAATCCCAGCAACCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164233.8 |
||
| CDS-3UTR CAA 90 bp | GAAGTTCCCTTTTCTGACTTGGGCTTAGGCCTATACCTTTATTTCTTATATATGAGTAGATATTGGCTTTaGGAAGCCGCACAATGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: EVPFSDLGLGLYLYFLYMSRYWL*EAAQCF Trigger: GAAGCATTGTGCGGCTTCCAAAAGCCAATATCTACT...CATATATAAGAAATAAAGGTATAGGCCTAAGCCCAAGTCAGAAAAGGGAACTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030118.10 ENSMUST00000164233.8 |
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