RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DNAI3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043020

Ensembl transcript IDs: ENSMUST00000160285.2

Found 140 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTCTCTCCAGCATCAACTaGGGGTGGATGGGGTCGGAG +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSLSSIN*GWMGSE
Trigger: CTCCGACCCCATCCACCCTCAGTTGATGCTGGAGAG...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp CACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGCCCAGCGACACCCATaGCTTGGAGACGGGAGGATT +
Preference number: 4 (lower is better)
Translates to: HSVKRGKASGVPQELSSRAQRHP*LGDGRI
Trigger: AATCCTCCCGTCTCCAAGCCATGGGTGTCGCTGGGC...TCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTCTGCAGCTGCAGCTGTaGCTGCAGGTTTTTGGGGCC +
Preference number: 4 (lower is better)
Translates to: VKRGKASGVPQELSSRVFLQLQL*LQVFGA
Trigger: GGCCCCAAAAACCTGCAGTCACAGCTGCAGCTGCAG...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp CACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGGTGCTCTCCTCCTCTaGGAGGTTCTTCCAGTCGTC +
Preference number: 4 (lower is better)
Translates to: HSVKRGKASGVPQELSSRGALLL*EVLPVV
Trigger: GACGACTGGAAGAACCTCGCAGAGGAGGAGAGCACC...TCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTCGTTGTTGGTGGCTGTaGTTGCTGCTGAGGCTGCAG +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSRCWWL*LLLRLQ
Trigger: CTGCAGCCTCAGCAGCAACCACAGCCACCAACAACG...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp ACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAAGGCGACCTCTGGATaGTGTGGACAGCCCCATCGT +
Preference number: 4 (lower is better)
Translates to: TLSKEREGQRGPPGAVFEKATSG*CGQPHR
Trigger: ACGATGGGGCTGTCCACACCATCCAGAGGTCGCCTT...CTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp AAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTCTTGTCCCCAAAGGTaGTCTCCTCCTCTGCGAGGT +
Preference number: 4 (lower is better)
Translates to: KRTLSKEREGQRGPPGAVSCPQR*SPPLRG
Trigger: ACCTCGCAGAGGAGGAGAGCACCTTTGGGGACAAGA...GACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp CACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGCTGCAGCAGCAGTCTaGCGGAATTCTGGACTCTCT +
Preference number: 4 (lower is better)
Translates to: HSVKRGKASGVPQELSSRAAAAV*RNSGLS
Trigger: AGAGAGTCCAGAATTCCGGCAGACTGCTGCTGCAGC...TCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp CACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGATCAACTGAGGGTGGATaGGGTCGGAGAAGCTCCAGA +
Preference number: 4 (lower is better)
Translates to: HSVKRGKASGVPQELSSRSTEGG*GRRSSR
Trigger: TCTGGAGCTTCTCCGACCCCATCCACCCTCAGTTGA...TCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTAAGAAAGGCGACCTCTaGATGGTGTGGACAGCCCCA +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSKKGDL*MVWTAP
Trigger: TGGGGCTGTCCACACCATCCAGAGGTCGCCTTTCTT...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTGTAGGACTTCTTCTCTaGGACTTTGCTGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSVGLLL*DFAEAE
Trigger: CTCGGCCTCAGCAAAGTCTCAGAGAAGAAGTCCTAC...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp CACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAAGGCATTCTGGTCACTaGAAGTCACTGGTGCACCAA +
Preference number: 4 (lower is better)
Translates to: HSVKRGKASGVPQELSSRRHSGH*KSLVHQ
Trigger: TTGGTGCACCAGTGACTTTCAGTGACCAGAATGCCT...TCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTTTCTGGATGGCCCATaGTCTCCATGTTCATGGGCT +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSFLDGP*SPCSWA
Trigger: AGCCCATGAACATGGAGAGCATGGGCCATCCAGAAA...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTCCACGAAGAACTTCGTaGAGAAGTCCTCTATCGGCT +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSPRRTS*RSPLSA
Trigger: AGCCGATAGAGGACTTCTGCACGAAGTTCTTCGTGG...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp ACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGTGCTCTCCATGTTCATaGGCTCCTCTTCCTCAGGAA +
Preference number: 4 (lower is better)
Translates to: TLSKEREGQRGPPGAVFECSPCS*APLPQE
Trigger: TTCCTGAGGAAGAGGAGCCCATGAACATGGAGAGCA...CTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp AAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTCTACCGGTGATTGCTaGGAGTTTGCGTTGTTGGTG +
Preference number: 4 (lower is better)
Translates to: KRTLSKEREGQRGPPGAVSTGDC*EFALLV
Trigger: CACCAACAACGCAAACTCCCAGCAATCACCGGTAGA...GACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTATTCTGGGACTGGGCTaGCTCGTGAGTTTTCTCCAG +
Preference number: 4 (lower is better)
Translates to: VKRGKASGVPQELSSRVFILGLG*LVSFLQ
Trigger: CTGGAGAAAACTCACGAGCCAGCCCAGTCCCAGAAT...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp ACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGACGCTAGAGGCATTCTaGTCACTGAAAGTCACTGGT +
Preference number: 4 (lower is better)
Translates to: TLSKEREGQRGPPGAVFETLEAF*SLKVTG
Trigger: ACCAGTGACTTTCAGTGACCAGAATGCCTCTAGCGT...CTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTTGGTACTCCTTCAGATaGGTGTCAGTCTTGTCCCCA +
Preference number: 4 (lower is better)
Translates to: VKRGKASGVPQELSSRVFWYSFR*VSVLSP
Trigger: TGGGGACAAGACTGACACCCATCTGAAGGAGTACCA...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp ACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGATTTCTTTGCGCTGCTaGACGTATTCCAGGTGTCTG +
Preference number: 4 (lower is better)
Translates to: TLSKEREGQRGPPGAVFEISLRC*TYSRCL
Trigger: CAGACACCTGGAATACGTCCAGCAGCGCAAAGAAAT...CTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTGGAGAAACATGGGCTTaGGAGAGGTCTTTTTACTTC +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSGETWA*ERSFYF
Trigger: GAAGTAAAAAGACCTCTCTCAAGCCCATGTTTCTCC...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCATTCAAGGAAGGGTaGCTTAAGGTCCAAGGGATT +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSSFKEG*LKVQGI
Trigger: AATCCCTTGGACCTTAAGTCACCCTTCCTTGAATGA...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp AAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCCGTATTCCAGGTGTCTaGCTTCTCTCTCAAAGTAGT +
Preference number: 4 (lower is better)
Translates to: KRTLSKEREGQRGPPGAVRIPGV*LLSQSS
Trigger: ACTACTTTGAGAGAGAAGTCAGACACCTGGAATACG...GACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp ACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAAAGCCCATTTTGTCTaGGTGCTTGTGTCCTTGACT +
Preference number: 4 (lower is better)
Translates to: TLSKEREGQRGPPGAVFEKAHFV*VLVSLT
Trigger: AGTCAAGGACACAAGCACGCAGACAAAATGGGCTTT...CTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTGTCACTGAAAGTCACTaGTGCACCAAATTCACTCCG +
Preference number: 4 (lower is better)
Translates to: VKRGKASGVPQELSSRVFVTESH*CTKFTP
Trigger: CGGAGTGAATTTGGTGCACCAGTGACTTTCAGTGAC...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp CACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAACTGAAAGTCACTGGTaGACCAAATTCACTCCGTTT +
Preference number: 4 (lower is better)
Translates to: HSVKRGKASGVPQELSSRTESHW*TKFTPF
Trigger: AAACGGAGTGAATTTGGTGCACCAGTGACTTTCAGT...TCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTACTTCAGCAATGACTTaGAAGCCGACATCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSTSAMT*KPTSFS
Trigger: TGAGAAAGATGTCGGCTTGCAAGTCATTGCTGAAGT...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTATGGCCATTTTCAATaGAAGACACTGCACAGTGTC +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSYGHFQ*KTLHSV
Trigger: GACACTGTGCAGTGTCTTCCATTGAAAATGGCCATA...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTACACTGCACAGTGTCTaGTGTACATCGATTCTTTAT +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSTLHSV*CTSILY
Trigger: ATAAAGAATCGATGTACATCAGACACTGTGCAGTGT...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTTCTTTATTGCTGTCTaGTTCAAGGAGAAACATGGG +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSFFIAV*FKEKHG
Trigger: CCCATGTTTCTCCTTGAACCAGACAGCAATAAAGAA...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp AACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTATCTTTCTCAACTTGTaGGAGGGTGTAATTTTTCTC +
Preference number: 4 (lower is better)
Translates to: NAHSVKRGKASGVPQELSIFLNL*EGVIFL
Trigger: GAGAAAAATTACACCCTCTCACAAGTTGAGAAAGAT...AGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp CACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGATTGTGGACACATTGTTaGAAAAGTCGACCAAAGATT +
Preference number: 4 (lower is better)
Translates to: HSVKRGKASGVPQELSSRLWTHC*KSRPKI
Trigger: AATCTTTGGTCGACTTTTTCAACAATGTGTCCACAA...TCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTTCTCTCAGAATAATATaGATGGACGACGTACCTTGT +
Preference number: 4 (lower is better)
Translates to: VKRGKASGVPQELSSRVFSLRII*MDDVPC
Trigger: ACAAGGTACGTCGTCCATTCATATTATTCTGAGAGA...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp CTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGACTGGGCTGGCTCGTaGGTTTTCTCCAGGAGGTCC +
Preference number: 4 (lower is better)
Translates to: LTLHKIKRTLSKEREGQRDWAGS*VFSRRS
Trigger: GGACCTCCTGGAGAAAACTCACGAGCCAGCCCAGTC...CCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp CACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGATCGGTTTTGCAAGTCTaGCAAGATATCTTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: HSVKRGKASGVPQELSSRSVLQV*QDIFLF
Trigger: AAAAAGGAAGATATCTTGGCAGACTTGCAAAACCGA...TCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp ACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGATATCTATCTTTTCTTaGTCACGGATTTCTTTGCGC +
Preference number: 4 (lower is better)
Translates to: TLSKEREGQRGPPGAVFEISIFS*SRISLR
Trigger: GCGCAAAGAAATCCGTGAGCAAGAAAAGATAGATAT...CTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTGGAACAAGTAACTGTTaGTTCATATTCTTTTTGCCC +
Preference number: 4 (lower is better)
Translates to: VKRGKASGVPQELSSRVFGTSNC*FIFFLP
Trigger: GGGCAAAAAGAATATGAAGCAACAGTTACTTGTTCC...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTACATCGATTCTTTATTaGTGTCTGGTTCAAGGAGAA +
Preference number: 4 (lower is better)
Translates to: VKRGKASGVPQELSSRVFTSILY*CLVQGE
Trigger: TTCTCCTTGAACCAGACAGCAATAAAGAATCGATGT...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp CTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGCAGGGACCAGTGTCCTaGCGTGTACCTTTTCGGTCC +
Preference number: 4 (lower is better)
Translates to: LTLHKIKRTLSKEREGQRQGPVS*RVPFRS
Trigger: GGACCGAAAAGGTACACGGCAGGACACTGGTCCCTG...CCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTGTGATTACTTTCCTATaGCCATTTTCAATGGAAGAC +
Preference number: 4 (lower is better)
Translates to: VKRGKASGVPQELSSRVFVITFL*PFSMED
Trigger: GTCTTCCATTGAAAATGGCCATAGGAAAGTAATCAC...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp CTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGCTACGGCTATAAACTaGTGCTTAGAGGAGAAGGTC +
Preference number: 4 (lower is better)
Translates to: LTLHKIKRTLSKEREGQRATAIN*CLEEKV
Trigger: GACCTTCTCCTCTAAGCAGCAGTTTATAGCCGTAGC...CCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp CTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGCATCTACTCGACAGTTaGATATTTCCTGGGTCTTGG +
Preference number: 4 (lower is better)
Translates to: LTLHKIKRTLSKEREGQRHLLDS*IFPGSW
Trigger: CCAAGACCCAGGAAATATTCAACTGTCGAGTAGATG...CCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp CTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGAGCTTGGTTGGACAGTaGTCTAAACTTGTATCACCC +
Preference number: 4 (lower is better)
Translates to: LTLHKIKRTLSKEREGQRSLVGQ*SKLVSP
Trigger: GGGTGATACAAGTTTAGACCACTGTCCAACCAAGCT...CCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp TCAGCTTGCTATCTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGCGCCCAGGCTCAGCTTaGTTGGACAGTGGTCTAAAC +
Preference number: 4 (lower is better)
Translates to: SACYLTLHKIKRTLSKERRPGSA*LDSGLN
Trigger: GTTTAGACCACTGTCCAACCAAGCTGAGCCTGGGCG...CCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAGATAGCAAGCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp CTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGCGCTTTCCTGATTCCTaGACAGATTCTTCCTCAATT +
Preference number: 4 (lower is better)
Translates to: LTLHKIKRTLSKEREGQRRFPDS*TDSSSI
Trigger: AATTGAGGAAGAATCTGTCCAGGAATCAGGAAAGCG...CCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp CTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGTTCAATGGAAGACACTaGACAGTGTCTGATGTACAT +
Preference number: 4 (lower is better)
Translates to: LTLHKIKRTLSKEREGQRFNGRH*TVSDVH
Trigger: ATGTACATCAGACACTGTGCAGTGTCTTCCATTGAA...CCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp TCAGCTTGCTATCTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGTTCTCCATGGTGTTGTaGAGGTCTGTAAAGGACTGG +
Preference number: 4 (lower is better)
Translates to: SACYLTLHKIKRTLSKERFSMVL*RSVKDW
Trigger: CCAGTCCTTTACAGACCTTCACAACACCATGGAGAA...CCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAGATAGCAAGCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp TCAGCTTGCTATCTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAGCATGTGACGAGCTaGCAATTTATTCCACTTCGG +
Preference number: 4 (lower is better)
Translates to: SACYLTLHKIKRTLSKEREHVTS*QFIPLR
Trigger: CCGAAGTGGAATAAATTGTCAGCTCGTCACATGCTC...CCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAGATAGCAAGCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CCA 90 bp TCAGCTTGCTATCTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGTCTTTTTACTTCTGTaGCCGCCCGTCTTGATGTTC +
Preference number: 4 (lower is better)
Translates to: SACYLTLHKIKRTLSKERVFLLL*PPVLMF
Trigger: GAACATCAAGACGGGCGGCCACAGAAGTAAAAAGAC...CCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAGATAGCAAGCTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR TCA 90 bp TCAGCTTGCTATCTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGCCAGTGTATATCCGTaGTTACTTTCCTATGGCCAT +
Preference number: 4 (lower is better)
Translates to: SACYLTLHKIKRTLSKERASVYP*LLSYGH
Trigger: ATGGCCATAGGAAAGTAATCACGGATATACACTGGC...CCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAGATAGCAAGCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR GCA 90 bp TCAGCTTGCTATCTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGACGTACCTTGTATTTTaGAAAGAAAAGGGTCTTCGC +
Preference number: 4 (lower is better)
Translates to: SACYLTLHKIKRTLSKERTYLVF*KEKGLR
Trigger: GCGAAGACCCTTTTCTTTGCAAAATACAAGGTACGT...CCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAGATAGCAAGCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 90 bp TCGGCCGATGTAGAACACTCCAGGCCTCGTCAGGGACCAGTGTCCTaGCGTGTACCTTTTCGGTCCGCAGCACGTTTGAAGGAGCGGTCC +
Preference number: 5 (lower is better)
Translates to: SADVEHSRPRQGPVS*RVPFRSAARLKERS
Trigger: GGACCGCTCCTTCAAACGTGCTGCGGACCGAAAAGGTACACGGCAGGACACTGGTCCCTGACGAGGCCTGGAGTGTTCTACATCGGCCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp ACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGCCCTTTTTCTGGCCCTaGGGGCTCTTCGGTGGCTTG +
Preference number: 5 (lower is better)
Translates to: TLSKEREGQRGPPGAVFEPFFWP*GLFGGL
Trigger: CAAGCCACCGAAGAGCCCCAAGGGCCAGAAAAAGGG...CTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 90 bp AGGGACCAGTGTCCTGCCGTGTACCTTTTCGGTCCGCAGCACGTTTaGAGGAGCGGTCCCGTCATGACCTCCTCCTTCCAGATAGCCACA +
Preference number: 5 (lower is better)
Translates to: RDQCPAVYLFGPQHV*RSGPVMTSSFQIAT
Trigger: TGTGGCTATCTGGAAGGAGGAGGTCATGACGGGACCGCTCCTTCAAACGTGCTGCGGACCGAAAAGGTACACGGCAGGACACTGGTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp ACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGCTCCTTGGGCTCTTCTaGTTCCTCTGGCACTTCTGG +
Preference number: 5 (lower is better)
Translates to: TLSKEREGQRGPPGAVFELLGLF*FLWHFW
Trigger: CCAGAAGTGCCAGAGGAACAAGAAGAGCCCAAGGAG...CTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp CACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGACCAGGCTCAGCTTGGTaGGACAGTGGTCTAAACTTG +
Preference number: 5 (lower is better)
Translates to: HSVKRGKASGVPQELSSRPGSAW*DSGLNL
Trigger: CAAGTTTAGACCACTGTCCAACCAAGCTGAGCCTGG...TCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTTCGCCCAGGCTCAGCTaGGTTGGACAGTGGTCTAAA +
Preference number: 5 (lower is better)
Translates to: VKRGKASGVPQELSSRVFSPRLS*VGQWSK
Trigger: TTTAGACCACTGTCCAACCAAGCTGAGCCTGGGCGA...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 90 bp ACTTCTGTGGCCGCCCGTCTTGATGTTCTCTATGCGGTCCGCGTGTaGCGTGATATCCCACAAGACGATCTGTCCGTTAATGCAGCCTCC +
Preference number: 5 (lower is better)
Translates to: TSVAARLDVLYAVRV*RDIPQDDLSVNAAS
Trigger: GGAGGCTGCATTAACGGACAGATCGTCTTGTGGGATATCACGGCACACGCGGACCGCATAGAGAACATCAAGACGGGCGGCCACAGAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp AAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTGCGTGCTTGTGTCCTaGACTTCAGCAATGACTTGC +
Preference number: 5 (lower is better)
Translates to: KRTLSKEREGQRGPPGAVCVLVS*TSAMTC
Trigger: GCAAGTCATTGCTGAAGTCAAGGACACAAGCACGCA...GACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 90 bp GTGGTTGCTGCTGAGGCTGCAGCTGCAGCTGTGACTGCAGGTTTTTaGGGCCGGATATCCCAAAAACAAATCGTGCAGTCTGCTGAGCAT +
Preference number: 5 (lower is better)
Translates to: VVAAEAAAAAVTAGF*GRISQKQIVQSAEH
Trigger: ATGCTCAGCAGACTGCACGATTTGTTTTTGGGATATCCGGCCCCAAAAACCTGCAGTCACAGCTGCAGCTGCAGCCTCAGCAGCAACCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 90 bp GATCTGTCCGTTAATGCAGCCTCCGGCGATGATATTGGGGTCACTTaGACAGAACTCGAAGCAGAAGATGTCATCCGGGCTCTCCAGCAT +
Preference number: 5 (lower is better)
Translates to: DLSVNAASGDDIGVT*TELEAEDVIRALQH
Trigger: ATGCTGGAGAGCCCGGATGACATCTTCTGCTTCGAGTTCTGTCCAAGTGACCCCAATATCATCGCCGGAGGCTGCATTAACGGACAGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp ACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGGAGAAACATGGGCTaGAGAGAGGTCTTTTTACTT +
Preference number: 5 (lower is better)
Translates to: TLSKEREGQRGPPGAVFERRNMG*REVFLL
Trigger: AAGTAAAAAGACCTCTCTCAAGCCCATGTTTCTCCT...CTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 90 bp GCTTTCCTGATTCCTGGACAGATTCTTCCTCAATTTCTTTCTCGCTaGCCAGCGACACCCATGGCTTGGAGACGGGAGGATTGTAGACGT +
Preference number: 5 (lower is better)
Translates to: AFLIPGQILPQFLSR*PATPMAWRREDCRR
Trigger: ACGTCTACAATCCTCCCGTCTCCAAGCCATGGGTGTCGCTGGGCAGCGAGAAAGAAATTGAGGAAGAATCTGTCCAGGAATCAGGAAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp ACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGCTTGTGGACACATTGTaGAAAAAGTCGACCAAAGAT +
Preference number: 5 (lower is better)
Translates to: TLSKEREGQRGPPGAVFELVDTL*KKSTKD
Trigger: ATCTTTGGTCGACTTTTTCAACAATGTGTCCACAAG...CTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTGACGTACCTTGTATTTaGCAAAGAAAAGGGTCTTCG +
Preference number: 5 (lower is better)
Translates to: VKRGKASGVPQELSSRVFDVPCI*QRKGSS
Trigger: CGAAGACCCTTTTCTTTGCAAAATACAAGGTACGTC...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp CACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGACATATCTATCTTTTCTaGCTCACGGATTTCTTTGCG +
Preference number: 5 (lower is better)
Translates to: HSVKRGKASGVPQELSSRHIYLF*LTDFFA
Trigger: CGCAAAGAAATCCGTGAGCAAGAAAAGATAGATATG...TCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTACTGAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp GTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTCCTCCATTTGCTCTTTaGTCTTTTGATAGATTTTCG +
Preference number: 5 (lower is better)
Translates to: VKRGKASGVPQELSSRVFPPFAL*SFDRFS
Trigger: CGAAAATCTATCAAAAGACAAAAGAGCAAATGGAGG...AAAGACTCTCGAAGACAGCTCCTGGGGGACCCCGCTGGCCTTCCCTCTCTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 90 bp GGGGCCGGATATCCCAAAAACAAATCGTGCAGTCTGCTGAGCATGTaGCGAGCTGACAATTTATTCCACTTCGGTTCTCAAAGACGGATC +
Preference number: 5 (lower is better)
Translates to: GAGYPKNKSCSLLSM*RADNLFHFGSQRRI
Trigger: GATCCGTCTTTGAGAACCGAAGTGGAATAAATTGTCAGCTCGTCACATGCTCAGCAGACTGCACGATTTGTTTTTGGGATATCCGGCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 90 bp TTTGATGTAGGTGATCATGGTGATGCAGATATTCTGGGACTGGGCTaGCTCGTGAGTTTTCTCCAGGAGGTCCCAGATATCGACATTTCC +
Preference number: 5 (lower is better)
Translates to: FDVGDHGDADILGLG*LVSFLQEVPDIDIS
Trigger: GGAAATGTCGATATCTGGGACCTCCTGGAGAAAACTCACGAGCCAGCCCAGTCCCAGAATATCTGCATCACCATGATCACCTACATCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 90 bp TTCGCTTTCTTCTTCACCAGTTCCAGGGCCATATCTATCTTTTCTTaGTCACGGATTTCTTTGCGCTGCTGGACGTATTCCAGGTGTCTG +
Preference number: 5 (lower is better)
Translates to: FAFFFTSSRAISIFS*SRISLRCWTYSRCL
Trigger: CAGACACCTGGAATACGTCCAGCAGCGCAAAGAAATCCGTGAGCAAGAAAAGATAGATATGGCCCTGGAACTGGTGAAGAAGAAAGCGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 90 bp GCGAGGTTCTTCCAGTCGTCGATAAACGTGTTCATGATCTCATTCTaGTGCAGGGCTACTTCAACGCTTGTGGACACATTGTTGAAAAAG +
Preference number: 5 (lower is better)
Translates to: ARFFQSSINVFMISF*CRATSTLVDTLLKK
Trigger: CTTTTTCAACAATGTGTCCACAAGCGTTGAAGTAGCCCTGCAGCAGAATGAGATCATGAACACGTTTATCGACGACTGGAAGAACCTCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 90 bp ATATCCCAAAAACAAATCGTGCAGTCTGCTGAGCATGTGACGAGCTaGCAATTTATTCCACTTCGGTTCTCAAAGACGGATCCCATCCTG +
Preference number: 5 (lower is better)
Translates to: ISQKQIVQSAEHVTS*QFIPLRFSKTDPIL
Trigger: CAGGATGGGATCCGTCTTTGAGAACCGAAGTGGAATAAATTGTCAGCTCGTCACATGCTCAGCAGACTGCACGATTTGTTTTTGGGATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 90 bp AGGTTCTTCCAGTCGTCGATAAACGTGTTCATGATCTCATTCTGCTaGAGGGCTACTTCAACGCTTGTGGACACATTGTTGAAAAAGTCG +
Preference number: 5 (lower is better)
Translates to: RFFQSSINVFMISFC*RATSTLVDTLLKKS
Trigger: CGACTTTTTCAACAATGTGTCCACAAGCGTTGAAGTAGCCCTGCAGCAGAATGAGATCATGAACACGTTTATCGACGACTGGAAGAACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 90 bp TCGAATGAGTCGGGCAGCCAGTGTATATCCGTGATTACTTTCCTATaGCCATTTTCAATGGAAGACACTGCACAGTGTCTGATGTACATC +
Preference number: 5 (lower is better)
Translates to: SNESGSQCISVITFL*PFSMEDTAQCLMYI
Trigger: GATGTACATCAGACACTGTGCAGTGTCTTCCATTGAAAATGGCCATAGGAAAGTAATCACGGATATACACTGGCTGCCCGACTCATTCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 90 bp TTGCAAAGAAAAGGGTCTTCGCCCAGGCTCAGCTTGGTTGGACAGTaGTCTAAACTTGTATCACCCTTAGACAGTTTTAATCTAGACAGG +
Preference number: 5 (lower is better)
Translates to: LQRKGSSPRLSLVGQ*SKLVSPLDSFNLDR
Trigger: CCTGTCTAGATTAAAACTGTCTAAGGGTGATACAAGTTTAGACCACTGTCCAACCAAGCTGAGCCTGGGCGAAGACCCTTTTCTTTGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp TCAGCTTGCTATCTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGACGTACACGTCTTCTaGGACGTGCTCCTTGGGCTC +
Preference number: 5 (lower is better)
Translates to: SACYLTLHKIKRTLSKERDVHVF*DVLLGL
Trigger: GAGCCCAAGGAGCACGTCCAAGAAGACGTGTACGTC...CCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAGATAGCAAGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 90 bp GTAGGCATCTTTTACGCTAGAGGCATTCTGGTCACTGAAAGTCACTaGTGCACCAAATTCACTCCGTTTTCTAGAAATCATGTAGGTCAC +
Preference number: 5 (lower is better)
Translates to: VGIFYARGILVTESH*CTKFTPFSRNHVGH
Trigger: GTGACCTACATGATTTCTAGAAAACGGAGTGAATTTGGTGCACCAGTGACTTTCAGTGACCAGAATGCCTCTAGCGTAAAAGATGCCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 90 bp TTTGACTGGGTGGAAGTCAGATACTGCGGCTCGGTTTTGCAAGTCTaGCAAGATATCTTCCTTTTTGATAAGCTTATACGTTTGTTCGTC +
Preference number: 5 (lower is better)
Translates to: FDWVEVRYCGSVLQV*QDIFLFDKLIRLFV
Trigger: GACGAACAAACGTATAAGCTTATCAAAAAGGAAGATATCTTGGCAGACTTGCAAAACCGAGCCGCAGTATCTGACTTCCACCCAGTCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp CTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGTGCTTCATATTCTTTTaGCCCTTTTTCTGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: LTLHKIKRTLSKEREGQRCFIFF*PFFWPL
Trigger: CAAGGGCCAGAAAAAGGGCAAAAAGAATATGAAGCA...CCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp TCAGCTTGCTATCTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGTGCTCACGGATTTCTTaGCGCTGCTGGACGTATTCC +
Preference number: 5 (lower is better)
Translates to: SACYLTLHKIKRTLSKERCSRIS*RCWTYS
Trigger: GGAATACGTCCAGCAGCGCAAAGAAATCCGTGAGCA...CCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAGATAGCAAGCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp CTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGAATGGACGACGTACCTaGTATTTTGCAAAGAAAAGG +
Preference number: 5 (lower is better)
Translates to: LTLHKIKRTLSKEREGQRNGRRT*YFAKKR
Trigger: CCTTTTCTTTGCAAAATACAAGGTACGTCGTCCATT...CCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp CTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGATAAGCTTATACGTTaGTTCGTCTGTCATATCTTC +
Preference number: 5 (lower is better)
Translates to: LTLHKIKRTLSKEREGQRDKLIR*FVCHIF
Trigger: GAAGATATGACAGACGAACAAACGTATAAGCTTATC...CCGCTGGCCTTCCCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 90 bp TTACTTTCCTATGGCCATTTTCAATGGAAGACACTGCACAGTGTCTaGTGTACATCGATTCTTTATTGCTGTCTGGTTCAAGGAGAAACA +
Preference number: 5 (lower is better)
Translates to: LLSYGHFQWKTLHSV*CTSILYCCLVQGET
Trigger: TGTTTCTCCTTGAACCAGACAGCAATAAAGAATCGATGTACATCAGACACTGTGCAGTGTCTTCCATTGAAAATGGCCATAGGAAAGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 90 bp TATATCCGTGATTACTTTCCTATGGCCATTTTCAATGGAAGACACTaGACAGTGTCTGATGTACATCGATTCTTTATTGCTGTCTGGTTC +
Preference number: 5 (lower is better)
Translates to: YIRDYFPMAIFNGRH*TVSDVHRFFIAVWF
Trigger: GAACCAGACAGCAATAAAGAATCGATGTACATCAGACACTGTGCAGTGTCTTCCATTGAAAATGGCCATAGGAAAGTAATCACGGATATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS-3UTR CAA 90 bp TCAGCTTGCTATCTTACCTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGTACATCGATTCTTTATaGCTGTCTGGTTCAAGGAGA +
Preference number: 5 (lower is better)
Translates to: SACYLTLHKIKRTLSKERYIDSL*LSGSRR
Trigger: TCTCCTTGAACCAGACAGCAATAAAGAATCGATGTA...CCTCTCTTTACTGAGTGTGCGTTTTATTTTATGTAAGGTAAGATAGCAAGCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp CAGGGACCAGTGTCCTGCCGTGTACCTTTTCGGTCCGCAGCACGTTaGAAGGAGCGGTCCCGTCATGACCTCCTCCTTCCAGATAGCCAC +
Preference number: 6 (lower is better)
Translates to: QGPVSCRVPFRSAAR*KERSRHDLLLPDSH
Trigger: GTGGCTATCTGGAAGGAGGAGGTCATGACGGGACCGCTCCTTCAAACGTGCTGCGGACCGAAAAGGTACACGGCAGGACACTGGTCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 72 bp TGTCCTGCCGTGTACCTTTTCGGTCCGCAGCACGTTTaGAGGAGCGGTCCCGTCATGACCTCCTCCTTCCAG +
Preference number: 6 (lower is better)
Translates to: CPAVYLFGPQHV*RSGPVMTSSFQ
Trigger: CTGGAAGGAGGAGGTCATGACGGGACCGCTCCTTCAAACGTGCTGCGGACCGAAAAGGTACACGGCAGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp GTGTCCTGCCGTGTACCTTTTCGGTCCGCAGCACGTTaGAAGGAGCGGTCCCGTCATGACCTCCTCCTTCCA +
Preference number: 6 (lower is better)
Translates to: VSCRVPFRSAAR*KERSRHDLLLP
Trigger: TGGAAGGAGGAGGTCATGACGGGACCGCTCCTTCAAACGTGCTGCGGACCGAAAAGGTACACGGCAGGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 72 bp GTAGAACACTCCAGGCCTCGTCAGGGACCAGTGTCCTaGCGTGTACCTTTTCGGTCCGCAGCACGTTTGAAG +
Preference number: 6 (lower is better)
Translates to: VEHSRPRQGPVS*RVPFRSAARLK
Trigger: CTTCAAACGTGCTGCGGACCGAAAAGGTACACGGCAGGACACTGGTCCCTGACGAGGCCTGGAGTGTTCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 72 bp TCTCTACCGGTGATTGCTGGGAGTTTGCGTTGTTGGTaGCTGTGGTTGCTGCTGAGGCTGCAGCTGCAGCTG +
Preference number: 6 (lower is better)
Translates to: SLPVIAGSLRCW*LWLLLRLQLQL
Trigger: CAGCTGCAGCTGCAGCCTCAGCAGCAACCACAGCCACCAACAACGCAAACTCCCAGCAATCACCGGTAGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 72 bp AAGCAGAAGATGTCATCCGGGCTCTCCAGCATCAACTaGGGGTGGATGGGGTCGGAGAAGCTCCAGAAGAGG +
Preference number: 6 (lower is better)
Translates to: KQKMSSGLSSIN*GWMGSEKLQKR
Trigger: CCTCTTCTGGAGCTTCTCCGACCCCATCCACCCTCAGTTGATGCTGGAGAGCCCGGATGACATCTTCTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 72 bp TCTTCTCTACCGGTGATTGCTGGGAGTTTGCGTTGTTaGTGGCTGTGGTTGCTGCTGAGGCTGCAGCTGCAG +
Preference number: 6 (lower is better)
Translates to: SSLPVIAGSLRC*WLWLLLRLQLQ
Trigger: CTGCAGCTGCAGCCTCAGCAGCAACCACAGCCACCAACAACGCAAACTCCCAGCAATCACCGGTAGAGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 72 bp ACTCCTTCAGATGGGTGTCAGTCTTGTCCCCAAAGGTaGTCTCCTCCTCTGCGAGGTTCTTCCAGTCGTCGA +
Preference number: 6 (lower is better)
Translates to: TPSDGCQSCPQR*SPPLRGSSSRR
Trigger: TCGACGACTGGAAGAACCTCGCAGAGGAGGAGAGCACCTTTGGGGACAAGACTGACACCCATCTGAAGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 72 bp GCCGCCCGTCTTGATGTTCTCTATGCGGTCCGCGTGTaGCGTGATATCCCACAAGACGATCTGTCCGTTAAT +
Preference number: 6 (lower is better)
Translates to: AARLDVLYAVRV*RDIPQDDLSVN
Trigger: ATTAACGGACAGATCGTCTTGTGGGATATCACGGCACACGCGGACCGCATAGAGAACATCAAGACGGGCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp TTCCAGATAGCCACATTCCATCCCCCAACAGTGAGGACGATGTCATaGAAGAAAGGCGACCTCTGGATGGTGTGGACAGCCCCATCGTGG +
Preference number: 6 (lower is better)
Translates to: FQIATFHPPTVRTMS*KKGDLWMVWTAPSW
Trigger: CCACGATGGGGCTGTCCACACCATCCAGAGGTCGCCTTTCTTCAATGACATCGTCCTCACTGTTGGGGGATGGAATGTGGCTATCTGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 72 bp GCTGAGGCTGCAGCTGCAGCTGTGACTGCAGGTTTTTaGGGCCGGATATCCCAAAAACAAATCGTGCAGTCT +
Preference number: 6 (lower is better)
Translates to: AEAAAAAVTAGF*GRISQKQIVQS
Trigger: AGACTGCACGATTTGTTTTTGGGATATCCGGCCCCAAAAACCTGCAGTCACAGCTGCAGCTGCAGCCTCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp TTCTTCTTCTCTACCGGTGATTGCTGGGAGTTTGCGTaGTTGGTGGCTGTGGTTGCTGCTGAGGCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: FFFSTGDCWEFA*LVAVVAAEAAA
Trigger: AGCTGCAGCCTCAGCAGCAACCACAGCCACCAACAACGCAAACTCCCAGCAATCACCGGTAGAGAAGAAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp TCCCACAAGACGATCTGTCCGTTAATGCAGCCTCCGGCGATGATATaGGGGTCACTTGGACAGAACTCGAAGCAGAAGATGTCATCCGGG +
Preference number: 6 (lower is better)
Translates to: SHKTICPLMQPPAMI*GSLGQNSKQKMSSG
Trigger: CCCGGATGACATCTTCTGCTTCGAGTTCTGTCCAAGTGACCCCAATATCATCGCCGGAGGCTGCATTAACGGACAGATCGTCTTGTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp AACATGGGCTTGAGAGAGGTCTTTTTACTTCTGTGGCCGCCCGTCTaGATGTTCTCTATGCGGTCCGCGTGTGCCGTGATATCCCACAAG +
Preference number: 6 (lower is better)
Translates to: NMGLREVFLLLWPPV*MFSMRSACAVISHK
Trigger: CTTGTGGGATATCACGGCACACGCGGACCGCATAGAGAACATCAAGACGGGCGGCCACAGAAGTAAAAAGACCTCTCTCAAGCCCATGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp TCTTCTTTCTTCTTCTCTACCGGTGATTGCTGGGAGTTTGCGTTGTaGGTGGCTGTGGTTGCTGCTGAGGCTGCAGCTGCAGCTGTGACT +
Preference number: 6 (lower is better)
Translates to: SSFFFSTGDCWEFAL*VAVVAAEAAAAAVT
Trigger: AGTCACAGCTGCAGCTGCAGCCTCAGCAGCAACCACAGCCACCAACAACGCAAACTCCCAGCAATCACCGGTAGAGAAGAAGAAAGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 72 bp ATTCCTGGACAGATTCTTCCTCAATTTCTTTCTCGCTaGCCAGCGACACCCATGGCTTGGAGACGGGAGGAT +
Preference number: 6 (lower is better)
Translates to: IPGQILPQFLSR*PATPMAWRRED
Trigger: ATCCTCCCGTCTCCAAGCCATGGGTGTCGCTGGGCAGCGAGAAAGAAATTGAGGAAGAATCTGTCCAGGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 72 bp GCCACAGACACGACTATGAGCCCGAAGATGGTCGGGTaGCAAGAGACACAGGTAATCATTTTCTCCATGGTG +
Preference number: 6 (lower is better)
Translates to: ATDTTMSPKMVG*QETQVIIFSMV
Trigger: CACCATGGAGAAAATGATTACCTGTGTCTCTTGGCACCCGACCATCTTCGGGCTCATAGTCGTGTCTGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 72 bp GTTAATGCAGCCTCCGGCGATGATATTGGGGTCACTTaGACAGAACTCGAAGCAGAAGATGTCATCCGGGCT +
Preference number: 6 (lower is better)
Translates to: VNAASGDDIGVT*TELEAEDVIRA
Trigger: AGCCCGGATGACATCTTCTGCTTCGAGTTCTGTCCAAGTGACCCCAATATCATCGCCGGAGGCTGCATTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 72 bp GGTGATCATGGTGATGCAGATATTCTGGGACTGGGCTaGCTCGTGAGTTTTCTCCAGGAGGTCCCAGATATC +
Preference number: 6 (lower is better)
Translates to: GDHGDADILGLG*LVSFLQEVPDI
Trigger: GATATCTGGGACCTCCTGGAGAAAACTCACGAGCCAGCCCAGTCCCAGAATATCTGCATCACCATGATCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp CTTCTTTCTTCTTCTCTACCGGTGATTGCTGGGAGTTaGCGTTGTTGGTGGCTGTGGTTGCTGCTGAGGCTG +
Preference number: 6 (lower is better)
Translates to: LLSSSLPVIAGS*RCWWLWLLLRL
Trigger: CAGCCTCAGCAGCAACCACAGCCACCAACAACGCAAACTCCCAGCAATCACCGGTAGAGAAGAAGAAAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp TTTTCTTCTTTCTTCTTCTCTACCGGTGATTGCTGGGAGTTTGCGTaGTTGGTGGCTGTGGTTGCTGCTGAGGCTGCAGCTGCAGCTGTG +
Preference number: 6 (lower is better)
Translates to: FSSFFFSTGDCWEFA*LVAVVAAEAAAAAV
Trigger: CACAGCTGCAGCTGCAGCCTCAGCAGCAACCACAGCCACCAACAACGCAAACTCCCAGCAATCACCGGTAGAGAAGAAGAAAGAAGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp CAATGTTTTCTTCTTTCTTCTTCTCTACCGGTGATTGCTGGGAGTTaGCGTTGTTGGTGGCTGTGGTTGCTGCTGAGGCTGCAGCTGCAG +
Preference number: 6 (lower is better)
Translates to: QCFLLSSSLPVIAGS*RCWWLWLLLRLQLQ
Trigger: CTGCAGCTGCAGCCTCAGCAGCAACCACAGCCACCAACAACGCAAACTCCCAGCAATCACCGGTAGAGAAGAAGAAAGAAGAAAACATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp ACGATCTGTCCGTTAATGCAGCCTCCGGCGATGATATaGGGGTCACTTGGACAGAACTCGAAGCAGAAGATG +
Preference number: 6 (lower is better)
Translates to: TICPLMQPPAMI*GSLGQNSKQKM
Trigger: CATCTTCTGCTTCGAGTTCTGTCCAAGTGACCCCAATATCATCGCCGGAGGCTGCATTAACGGACAGATCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp CCCACGAAGAACTTCGTGCAGAAGTCCTCTATCGGCTaGAGGATATTGGCTATCCCTGCTTCCAGGTTTTGG +
Preference number: 6 (lower is better)
Translates to: PTKNFVQKSSIG*RILAIPASRFW
Trigger: CCAAAACCTGGAAGCAGGGATAGCCAATATCCTCAAGCCGATAGAGGACTTCTGCACGAAGTTCTTCGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 72 bp CCACGAAGAACTTCGTGCAGAAGTCCTCTATCGGCTTaGGGATATTGGCTATCCCTGCTTCCAGGTTTTGGT +
Preference number: 6 (lower is better)
Translates to: PRRTSCRSPLSA*GYWLSLLPGFG
Trigger: ACCAAAACCTGGAAGCAGGGATAGCCAATATCCTCAAGCCGATAGAGGACTTCTGCACGAAGTTCTTCGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 72 bp ATGGTGATGCAGATATTCTGGGACTGGGCTGGCTCGTaGGTTTTCTCCAGGAGGTCCCAGATATCGACATTT +
Preference number: 6 (lower is better)
Translates to: MVMQIFWDWAGS*VFSRRSQISTF
Trigger: AAATGTCGATATCTGGGACCTCCTGGAGAAAACTCACGAGCCAGCCCAGTCCCAGAATATCTGCATCACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 72 bp CTTTATTGCTGTCTGGTTCAAGGAGAAACATGGGCTTaGGAGAGGTCTTTTTACTTCTGTGGCCGCCCGTCT +
Preference number: 6 (lower is better)
Translates to: LYCCLVQGETWA*ERSFYFCGRPS
Trigger: AGACGGGCGGCCACAGAAGTAAAAAGACCTCTCTCAAGCCCATGTTTCTCCTTGAACCAGACAGCAATAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 72 bp GGGCCGGATATCCCAAAAACAAATCGTGCAGTCTGCTaGGCATGTGACGAGCTGACAATTTATTCCACTTCG +
Preference number: 6 (lower is better)
Translates to: GPDIPKTNRAVC*ACDELTIYSTS
Trigger: CGAAGTGGAATAAATTGTCAGCTCGTCACATGCTCAGCAGACTGCACGATTTGTTTTTGGGATATCCGGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp ACCAGTTCCAGGGCCATATCTATCTTTTCTTGCTCACGGATTTCTTaGCGCTGCTGGACGTATTCCAGGTGTCTGACTTCTCTCTCAAAG +
Preference number: 6 (lower is better)
Translates to: TSSRAISIFSCSRIS*RCWTYSRCLTSLSK
Trigger: CTTTGAGAGAGAAGTCAGACACCTGGAATACGTCCAGCAGCGCAAAGAAATCCGTGAGCAAGAAAAGATAGATATGGCCCTGGAACTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp TTTCGCTTTCTTCTTCACCAGTTCCAGGGCCATATCTATCTTTTCTaGCTCACGGATTTCTTTGCGCTGCTGGACGTATTCCAGGTGTCT +
Preference number: 6 (lower is better)
Translates to: FRFLLHQFQGHIYLF*LTDFFALLDVFQVS
Trigger: AGACACCTGGAATACGTCCAGCAGCGCAAAGAAATCCGTGAGCAAGAAAAGATAGATATGGCCCTGGAACTGGTGAAGAAGAAAGCGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 72 bp CAGTCGTCGATAAACGTGTTCATGATCTCATTCTGCTaGAGGGCTACTTCAACGCTTGTGGACACATTGTTG +
Preference number: 6 (lower is better)
Translates to: QSSINVFMISFC*RATSTLVDTLL
Trigger: CAACAATGTGTCCACAAGCGTTGAAGTAGCCCTGCAGCAGAATGAGATCATGAACACGTTTATCGACGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 72 bp TTCCAGTCGTCGATAAACGTGTTCATGATCTCATTCTaGTGCAGGGCTACTTCAACGCTTGTGGACACATTG +
Preference number: 6 (lower is better)
Translates to: FQSSINVFMISF*CRATSTLVDTL
Trigger: CAATGTGTCCACAAGCGTTGAAGTAGCCCTGCAGCAGAATGAGATCATGAACACGTTTATCGACGACTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 72 bp TCGGGCAGCCAGTGTATATCCGTGATTACTTTCCTATaGCCATTTTCAATGGAAGACACTGCACAGTGTCTG +
Preference number: 6 (lower is better)
Translates to: SGSQCISVITFL*PFSMEDTAQCL
Trigger: CAGACACTGTGCAGTGTCTTCCATTGAAAATGGCCATAGGAAAGTAATCACGGATATACACTGGCTGCCCGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 72 bp ATGTTTTCTTCTTTCTTCTTCTCTACCGGTGATTGCTaGGAGTTTGCGTTGTTGGTGGCTGTGGTTGCTGCT +
Preference number: 6 (lower is better)
Translates to: MFSSFFFSTGDC*EFALLVAVVAA
Trigger: AGCAGCAACCACAGCCACCAACAACGCAAACTCCCAGCAATCACCGGTAGAGAAGAAGAAAGAAGAAAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp AGGGCCATATCTATCTTTTCTTGCTCACGGATTTCTTaGCGCTGCTGGACGTATTCCAGGTGTCTGACTTCT +
Preference number: 6 (lower is better)
Translates to: RAISIFSCSRIS*RCWTYSRCLTS
Trigger: AGAAGTCAGACACCTGGAATACGTCCAGCAGCGCAAAGAAATCCGTGAGCAAGAAAAGATAGATATGGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp TACATCGATTCTTTATTGCTGTCTGGTTCAAGGAGAAACATGGGCTaGAGAGAGGTCTTTTTACTTCTGTGGCCGCCCGTCTTGATGTTC +
Preference number: 6 (lower is better)
Translates to: YIDSLLLSGSRRNMG*REVFLLLWPPVLMF
Trigger: GAACATCAAGACGGGCGGCCACAGAAGTAAAAAGACCTCTCTCAAGCCCATGTTTCTCCTTGAACCAGACAGCAATAAAGAATCGATGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 72 bp TTGACTGGGTGGAAGTCAGATACTGCGGCTCGGTTTTaGAAGTCTGCCAAGATATCTTCCTTTTTGATAAGC +
Preference number: 6 (lower is better)
Translates to: LTGWKSDTAARF*KSAKISSFLIS
Trigger: GCTTATCAAAAAGGAAGATATCTTGGCAGACTTGCAAAACCGAGCCGCAGTATCTGACTTCCACCCAGTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 72 bp TCTATCTTTTCTTGCTCACGGATTTCTTTGCGCTGCTaGACGTATTCCAGGTGTCTGACTTCTCTCTCAAAG +
Preference number: 6 (lower is better)
Translates to: SIFSCSRISLRC*TYSRCLTSLSK
Trigger: CTTTGAGAGAGAAGTCAGACACCTGGAATACGTCCAGCAGCGCAAAGAAATCCGTGAGCAAGAAAAGATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp TTAGGAAAAGCCCATTTTGTCTGCGTGCTTGTGTCCTaGACTTCAGCAATGACTTGCAAGCCGACATCTTTC +
Preference number: 6 (lower is better)
Translates to: LGKAHFVCVLVS*TSAMTCKPTSF
Trigger: GAAAGATGTCGGCTTGCAAGTCATTGCTGAAGTCAAGGACACAAGCACGCAGACAAAATGGGCTTTTCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp ATTTTGCAAAGAAAAGGGTCTTCGCCCAGGCTCAGCTaGGTTGGACAGTGGTCTAAACTTGTATCACCCTTA +
Preference number: 6 (lower is better)
Translates to: ILQRKGSSPRLS*VGQWSKLVSPL
Trigger: TAAGGGTGATACAAGTTTAGACCACTGTCCAACCAAGCTGAGCCTGGGCGAAGACCCTTTTCTTTGCAAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp GTACCTTGTATTTTGCAAAGAAAAGGGTCTTCGCCCAGGCTCAGCTaGGTTGGACAGTGGTCTAAACTTGTATCACCCTTAGACAGTTTT +
Preference number: 6 (lower is better)
Translates to: VPCILQRKGSSPRLS*VGQWSKLVSPLDSF
Trigger: AAAACTGTCTAAGGGTGATACAAGTTTAGACCACTGTCCAACCAAGCTGAGCCTGGGCGAAGACCCTTTTCTTTGCAAAATACAAGGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp CTCGTATTCCAACTTCAGCTCGGCCTCCATTTGCTCTTTTGTCTTTaGATAGATTTTCGCTTTCTTCTTCACCAGTTCCAGGGCCATATC +
Preference number: 6 (lower is better)
Translates to: LVFQLQLGLHLLFCL*IDFRFLLHQFQGHI
Trigger: GATATGGCCCTGGAACTGGTGAAGAAGAAAGCGAAAATCTATCAAAAGACAAAAGAGCAAATGGAGGCCGAGCTGAAGTTGGAATACGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 72 bp CAAGAGACACAGGTAATCATTTTCTCCATGGTGTTGTaGAGGTCTGTAAAGGACTGGTACTCCTTCAGATGG +
Preference number: 6 (lower is better)
Translates to: QETQVIIFSMVL*RSVKDWYSFRW
Trigger: CCATCTGAAGGAGTACCAGTCCTTTACAGACCTTCACAACACCATGGAGAAAATGATTACCTGTGTCTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 72 bp ATATCTATCTTTTCTTGCTCACGGATTTCTTTGCGCTaGTGGACGTATTCCAGGTGTCTGACTTCTCTCTCA +
Preference number: 6 (lower is better)
Translates to: ISIFSCSRISLR*WTYSRCLTSLS
Trigger: TGAGAGAGAAGTCAGACACCTGGAATACGTCCAGCAGCGCAAAGAAATCCGTGAGCAAGAAAAGATAGATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp TTTGACTGGGTGGAAGTCAGATACTGCGGCTCGGTTTaGCAAGTCTGCCAAGATATCTTCCTTTTTGATAAG +
Preference number: 6 (lower is better)
Translates to: FDWVEVRYCGSV*QVCQDIFLFDK
Trigger: CTTATCAAAAAGGAAGATATCTTGGCAGACTTGCAAAACCGAGCCGCAGTATCTGACTTCCACCCAGTCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 72 bp CCGTTTTCTAGAAATCATGTAGGTCACCCGCTTTCCTaGTTCCTGGACAGATTCTTCCTCAATTTCTTTCTC +
Preference number: 6 (lower is better)
Translates to: PFSRNHVGHPLS*FLDRFFLNFFL
Trigger: GAGAAAGAAATTGAGGAAGAATCTGTCCAGGAATCAGGAAAGCGGGTGACCTACATGATTTCTAGAAAACGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 72 bp TATCCCAAAAACAAATCGTGCAGTCTGCTGAGCATGTaGCGAGCTGACAATTTATTCCACTTCGGTTCTCAA +
Preference number: 6 (lower is better)
Translates to: YPKNKSCSLLSM*RADNLFHFGSQ
Trigger: TTGAGAACCGAAGTGGAATAAATTGTCAGCTCGTCACATGCTCAGCAGACTGCACGATTTGTTTTTGGGATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS GCA 72 bp GTGGAAGTCAGATACTGCGGCTCGGTTTTGCAAGTCTaGCAAGATATCTTCCTTTTTGATAAGCTTATACGT +
Preference number: 6 (lower is better)
Translates to: VEVRYCGSVLQV*QDIFLFDKLIR
Trigger: ACGTATAAGCTTATCAAAAAGGAAGATATCTTGGCAGACTTGCAAAACCGAGCCGCAGTATCTGACTTCCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp CTTGTCTCTCAGAATAATATGAATGGACGACGTACCTaGTATTTTGCAAAGAAAAGGGTCTTCGCCCAGGCT +
Preference number: 6 (lower is better)
Translates to: LVSQNNMNGRRT*YFAKKRVFAQA
Trigger: AGCCTGGGCGAAGACCCTTTTCTTTGCAAAATACAAGGTACGTCGTCCATTCATATTATTCTGAGAGACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CCA 72 bp TTTTACGCTAGAGGCATTCTGGTCACTGAAAGTCACTaGTGCACCAAATTCACTCCGTTTTCTAGAAATCAT +
Preference number: 6 (lower is better)
Translates to: FYARGILVTESH*CTKFTPFSRNH
Trigger: ATGATTTCTAGAAAACGGAGTGAATTTGGTGCACCAGTGACTTTCAGTGACCAGAATGCCTCTAGCGTAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp CGTATTCCAACTTCAGCTCGGCCTCCATTTGCTCTTTaGTCTTTTGATAGATTTTCGCTTTCTTCTTCACCA +
Preference number: 6 (lower is better)
Translates to: RIPTSARPPFAL*SFDRFSLSSSP
Trigger: TGGTGAAGAAGAAAGCGAAAATCTATCAAAAGACAAAAGAGCAAATGGAGGCCGAGCTGAAGTTGGAATACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS TCA 72 bp TATGGCCATTTTCAATGGAAGACACTGCACAGTGTCTaGTGTACATCGATTCTTTATTGCTGTCTGGTTCAA +
Preference number: 6 (lower is better)
Translates to: YGHFQWKTLHSV*CTSILYCCLVQ
Trigger: TTGAACCAGACAGCAATAAAGAATCGATGTACATCAGACACTGTGCAGTGTCTTCCATTGAAAATGGCCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp GTTTGTTCGTCTGTCATATCTTCATCTACTCGACAGTaGAATATTTCCTGGGTCTTGGTAGTTAATACTAGT +
Preference number: 6 (lower is better)
Translates to: VCSSVISSSTRQ*NISWVLVVNTS
Trigger: ACTAGTATTAACTACCAAGACCCAGGAAATATTCAACTGTCGAGTAGATGAAGATATGACAGACGAACAAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 90 bp TTGCAAGTCTGCCAAGATATCTTCCTTTTTGATAAGCTTATACGTTaGTTCGTCTGTCATATCTTCATCTACTCGACAGTTGAATATTTC +
Preference number: 6 (lower is better)
Translates to: LQVCQDIFLFDKLIR*FVCHIFIYSTVEYF
Trigger: GAAATATTCAACTGTCGAGTAGATGAAGATATGACAGACGAACAAACGTATAAGCTTATCAAAAAGGAAGATATCTTGGCAGACTTGCAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2
CDS CAA 72 bp TGCCAAGATATCTTCCTTTTTGATAAGCTTATACGTTaGTTCGTCTGTCATATCTTCATCTACTCGACAGTT +
Preference number: 6 (lower is better)
Translates to: CQDIFLFDKLIR*FVCHIFIYSTV
Trigger: AACTGTCGAGTAGATGAAGATATGACAGACGAACAAACGTATAAGCTTATCAAAAAGGAAGATATCTTGGCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160285.2