Pregenerated sensors for DNAAF6B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042433Ensembl transcript IDs: ENSMUST00000044806.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTCAGCACTGTCTTGTATaGAACAACCATATTCCTAAC | + |
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Preference number: 2 (lower is better) Translates to: TFSSKHESHRTQQNVIVLQHCLV*NNHIPN Trigger: GTTAGGAATATGGTTGTTTCATACAAGACAGTGCTG...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR GCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTAGACTGGCCAGTGCTTaGAGGGTTGAGGCAGAAGAC | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLRLASA*RVEAED Trigger: GTCTTCTGCCTCAACCCTGCAAGCACTGGCCAGTCT...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR CCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTCAGGATTCAGGAGACTaGCCAGTGCTTGCAGGGTTG | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLQDSGD*PVLAGL Trigger: CAACCCTGCAAGCACTGGCCAGTCTCCTGAATCCTG...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR CCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTTTCACCACCAGCTCCTaGCAGCATGCTGTTGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLFTTSS*QHAVEG Trigger: TCCTTCAACAGCATGCTGCCAGGAGCTGGTGGTGAA...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR CCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTATGCTCTCCTCCTTCTaGAACCTCTTCTGGATTCCA | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLMLSSF*NLFWIP Trigger: TGGAATCCAGAAGAGGTTCCAGAAGGAGGAGAGCAT...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR TCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTTTTGGAGGGTCATCCTaGCTTCAAGTGTTTCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLFGGSS*LQVFQL Trigger: AAGCTGAAACACTTGAAGTCAGGATGACCCTCCAAA...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR GCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTTCCCATATATCATCATaGTCTCCTCCTTCTGGAACC | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLSHISS*SPPSGT Trigger: GGTTCCAGAAGGAGGAGAGCATGATGATATATGGGA...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR CCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTTCCTGGGTTCAGGAATaGCTTTGGACTCTTTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLSWVQE*LWTLLL Trigger: AAGCAAAAGAGTCCAAAGCCATTCCTGAACCCAGGA...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR GCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTGGCTTTGGACTCTTTTaGTTTAGGCGGTCCAATATT | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLGFGLF*FRRSNI Trigger: AATATTGGACCGCCTAAAGCAAAAGAGTCCAAAGCC...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR CCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTAAATCCAAATCCCTTTaGAGGGTCATCCTGACTTCA | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLKSKSL*RVILTS Trigger: TGAAGTCAGGATGACCCTCCAAAGGGATTTGGATTT...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR TCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTTCCTGGATGTCAATTTaGATTTCAGAAGGGTTCGTA | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLSWMSI*ISEGFV Trigger: TACGAACCCTTCTGAAATTCAAATTGACATCCAGGA...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR CCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTTACAATCTCATAATCTaGGATTTCTCGAACATCCCA | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLYNLII*DFSNIP Trigger: TGGGATGTTCGAGAAATCCCAGATTATGAGATTGTA...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR GCA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTGACAGCATCTCAAATTaGATATTTTTAGCTTCCATG | + |
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Preference number: 4 (lower is better) Translates to: TFSSKHESHRTQQNVIVLDSISN*IFLASM Trigger: CATGGAAGCTAAAAATATGCAATTTGAGATGCTGTC...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS CCA 90 bp | TCAGAAGGGTTCGTATTGGGCAGTTTAATTTTCACCACCAGCTCCTaGCAGCATGCTGTTGAAGGATCCTTTCCTGTCAATCCTAGGTAT | + |
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Preference number: 5 (lower is better) Translates to: SEGFVLGSLIFTTSS*QHAVEGSFPVNPRY Trigger: ATACCTAGGATTGACAGGAAAGGATCCTTCAACAGCATGCTGCCAGGAGCTGGTGGTGAAAATTAAACTGCCCAATACGAACCCTTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS TCA 90 bp | ATCCTCTTCTTCAGGATTCAGGAGACTGGCCAGTGCTTGCAGGGTTaGGGCAGAAGACAGCATCTCAAATTGCATATTTTTAGCTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: ILFFRIQETGQCLQG*GRRQHLKLHIFSFH Trigger: ATGGAAGCTAAAAATATGCAATTTGAGATGCTGTCTTCTGCCTCAACCCTGCAAGCACTGGCCAGTCTCCTGAATCCTGAAGAAGAGGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS GCA 90 bp | TCAAAATCATCCTCTTCTTCAGGATTCAGGAGACTGGCCAGTGCTTaGAGGGTTGAGGCAGAAGACAGCATCTCAAATTGCATATTTTTA | + |
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Preference number: 5 (lower is better) Translates to: SKSSSSSGFRRLASA*RVEAEDSISNCIFL Trigger: TAAAAATATGCAATTTGAGATGCTGTCTTCTGCCTCAACCCTGCAAGCACTGGCCAGTCTCCTGAATCCTGAAGAAGAGGATGATTTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR CAA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTTCCAAATTCCCTGTTTaGACCTTCTCAGCTTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: TFSSKHESHRTQQNVIVLSKFPV*TFSASA Trigger: TGCAGAAGCTGAGAAGGTCAAAACAGGGAATTTGGA...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR CAA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTTCAGAAGGGTTCGTATaGGGCAGTTTAATTTTCACC | + |
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Preference number: 5 (lower is better) Translates to: TFSSKHESHRTQQNVIVLSEGFV*GSLIFT Trigger: GGTGAAAATTAAACTGCCCAATACGAACCCTTCTGA...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR CAA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTTTCCTGGATGTCAATTaGAATTTCAGAAGGGTTCGT | + |
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Preference number: 5 (lower is better) Translates to: TFSSKHESHRTQQNVIVLFLDVN*NFRRVR Trigger: ACGAACCCTTCTGAAATTCAAATTGACATCCAGGAA...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS-3UTR CAA 90 bp | ACTTTTTCAAGTAAACATGAGTCCCACAGGACACAGCAAAACGTTATAGTCCTTAGTTCCCACAGTTTGTaGGAATACAATCTCATAATC | + |
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Preference number: 5 (lower is better) Translates to: TFSSKHESHRTQQNVIVLSSHSL*EYNLII Trigger: GATTATGAGATTGTATTCCAACAAACTGTGGGAACT...AAGGACTATAACGTTTTGCTGTGTCCTGTGGGACTCATGTTTACTTGAAAAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS GCA 72 bp | ATCACTCCTGGGTTCAGGAATGGCTTTGGACTCTTTTaGTTTAGGCGGTCCAATATTCCCAGGGCCCATAGC | + |
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Preference number: 6 (lower is better) Translates to: ITPGFRNGFGLF*FRRSNIPRAHS Trigger: GCTATGGGCCCTGGGAATATTGGACCGCCTAAAGCAAAAGAGTCCAAAGCCATTCCTGAACCCAGGAGTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS GCA 72 bp | CCTGACTTCAAGTGTTTCAGCTTCCCAGATATAGGATaGTCTAGCACTGTTCCGTTCCACAGGCTGGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: PDFKCFSFPDIG*SSTVPFHRLGK Trigger: TTTCCCCAGCCTGTGGAACGGAACAGTGCTAGAGCATCCTATATCTGGGAAGCTGAAACACTTGAAGTCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS CAA 90 bp | CTTTTTAGGAGTGCGAAGATCAAGGAGCATTTCCTGGATGTCAATTaGAATTTCAGAAGGGTTCGTATTGGGCAGTTTAATTTTCACCAC | + |
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Preference number: 6 (lower is better) Translates to: LFRSAKIKEHFLDVN*NFRRVRIGQFNFHH Trigger: GTGGTGAAAATTAAACTGCCCAATACGAACCCTTCTGAAATTCAAATTGACATCCAGGAAATGCTCCTTGATCTTCGCACTCCTAAAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS CAA 72 bp | AGTGCGAAGATCAAGGAGCATTTCCTGGATGTCAATTaGAATTTCAGAAGGGTTCGTATTGGGCAGTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: SAKIKEHFLDVN*NFRRVRIGQFN Trigger: ATTAAACTGCCCAATACGAACCCTTCTGAAATTCAAATTGACATCCAGGAAATGCTCCTTGATCTTCGCACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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| CDS CCA 72 bp | AGTTCCCACAGTTTGTTGGAATACAATCTCATAATCTaGGATTTCTCGAACATCCCATATATCATCATGCTC | + |
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Preference number: 6 (lower is better) Translates to: SSHSLLEYNLII*DFSNIPYIIML Trigger: GAGCATGATGATATATGGGATGTTCGAGAAATCCCAGATTATGAGATTGTATTCCAACAAACTGTGGGAACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044806.3 |
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