Pregenerated sensors for DNAAF6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026063Ensembl transcript IDs: ENSMUST00000027230.3
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTCACTTTCATCACTCCTGGGTTCAGGAATAGCTTTGGACTCTTTTaGTTTAGGTGGTCCAATATTCCCAGGGCCCATGGCTCCAATAGT | + |
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Preference number: 5 (lower is better) Translates to: LTFITPGFRNSFGLF*FRWSNIPRAHGSNS Trigger: ACTATTGGAGCCATGGGCCCTGGGAATATTGGACCACCTAAAGCAAAAGAGTCCAAAGCTATTCCTGAACCCAGGAGTGATGAAAGTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS CCA 90 bp | TCAGAAGGGTTTGTATTGGGCAGTTTAATTTTCACCACCAGCTCCTaGCAGCATGCCGTTGAAGGATCCTTTCTTGTTAATCCTAGGTAT | + |
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Preference number: 5 (lower is better) Translates to: SEGFVLGSLIFTTSS*QHAVEGSFLVNPRY Trigger: ATACCTAGGATTAACAAGAAAGGATCCTTCAACGGCATGCTGCCAGGAGCTGGTGGTGAAAATTAAACTGCCCAATACAAACCCTTCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS CCA 90 bp | TGGAATTTCACGAACATCCCATATATCATCATGCTCTGCTCCTTCTaGAACCTCTTCTGGATTCCAGATGTTCTCACTTTCATCACTCCT | + |
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Preference number: 5 (lower is better) Translates to: WNFTNIPYIIMLCSF*NLFWIPDVLTFITP Trigger: AGGAGTGATGAAAGTGAGAACATCTGGAATCCAGAAGAGGTTCCAGAAGGAGCAGAGCATGATGATATATGGGATGTTCGTGAAATTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS TCA 90 bp | TCAAAACCATCCTCTTCTTCGGGATTGAGGAGACTGGATAGTGCTTaGAGGGACCAGGCAGAAGACAATGTCACAAATTGCATATTTTTA | + |
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Preference number: 5 (lower is better) Translates to: SKPSSSSGLRRLDSA*RDQAEDNVTNCIFL Trigger: TAAAAATATGCAATTTGTGACATTGTCTTCTGCCTGGTCCCTTCAAGCACTATCCAGTCTCCTCAATCCCGAAGAAGAGGATGGTTTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS GCA 90 bp | CTCATAATCTGGAATTTCACGAACATCCCATATATCATCATGCTCTaGTCCTTCTGGAACCTCTTCTGGATTCCAGATGTTCTCACTTTC | + |
|
Preference number: 5 (lower is better) Translates to: LIIWNFTNIPYIIML*SFWNLFWIPDVLTF Trigger: GAAAGTGAGAACATCTGGAATCCAGAAGAGGTTCCAGAAGGAGCAGAGCATGATGATATATGGGATGTTCGTGAAATTCCAGATTATGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS CCA 90 bp | TACGTCCTCAGTTCCCACAGTTTGTTGGAATACAATCTCATAATCTaGAATTTCACGAACATCCCATATATCATCATGCTCTGCTCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: YVLSSHSLLEYNLII*NFTNIPYIIMLCSF Trigger: GAAGGAGCAGAGCATGATGATATATGGGATGTTCGTGAAATTCCAGATTATGAGATTGTATTCCAACAAACTGTGGGAACTGAGGACGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS GCA 72 bp | CCTGACTTCAAGTGTTTCAGCTTCCCAGATATAGGATaGTCTAGCACTGTTCCGTTCCACGGGCTGGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: PDFKCFSFPDIG*SSTVPFHGLGK Trigger: TTTCCCCAGCCCGTGGAACGGAACAGTGCTAGAGCATCCTATATCTGGGAAGCTGAAACACTTGAAGTCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS CAA 72 bp | CCAGCTCCTGGCAGCATGCCGTTGAAGGATCCTTTCTaGTTAATCCTAGGTATACGTCCTCAGTTCCCACAG | + |
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Preference number: 6 (lower is better) Translates to: PAPGSMPLKDPF*LILGIRPQFPQ Trigger: CTGTGGGAACTGAGGACGTATACCTAGGATTAACAAGAAAGGATCCTTCAACGGCATGCTGCCAGGAGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS GCA 72 bp | ATCACTCCTGGGTTCAGGAATAGCTTTGGACTCTTTTaGTTTAGGTGGTCCAATATTCCCAGGGCCCATGGC | + |
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Preference number: 6 (lower is better) Translates to: ITPGFRNSFGLF*FRWSNIPRAHG Trigger: GCCATGGGCCCTGGGAATATTGGACCACCTAAAGCAAAAGAGTCCAAAGCTATTCCTGAACCCAGGAGTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS TCA 72 bp | TCCTCTTCTTCGGGATTGAGGAGACTGGATAGTGCTTaGAGGGACCAGGCAGAAGACAATGTCACAAATTGC | + |
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Preference number: 6 (lower is better) Translates to: SSSSGLRRLDSA*RDQAEDNVTNC Trigger: GCAATTTGTGACATTGTCTTCTGCCTGGTCCCTTCAAGCACTATCCAGTCTCCTCAATCCCGAAGAAGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS CCA 72 bp | GGGTTCAGGAATAGCTTTGGACTCTTTTGCTTTAGGTaGTCCAATATTCCCAGGGCCCATGGCTCCAATAGT | + |
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Preference number: 6 (lower is better) Translates to: GFRNSFGLFCFR*SNIPRAHGSNS Trigger: ACTATTGGAGCCATGGGCCCTGGGAATATTGGACCACCTAAAGCAAAAGAGTCCAAAGCTATTCCTGAACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS CAA 90 bp | TTTTCACCACCAGCTCCTGGCAGCATGCCGTTGAAGGATCCTTTCTaGTTAATCCTAGGTATACGTCCTCAGTTCCCACAGTTTGTTGGA | + |
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Preference number: 6 (lower is better) Translates to: FSPPAPGSMPLKDPF*LILGIRPQFPQFVG Trigger: TCCAACAAACTGTGGGAACTGAGGACGTATACCTAGGATTAACAAGAAAGGATCCTTCAACGGCATGCTGCCAGGAGCTGGTGGTGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS GCA 72 bp | TTCCCAGGGCCCATGGCTCCAATAGTAAATGAGCATTaGCCCTGTTCAAAATCAAAACCATCCTCTTCTTCG | + |
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Preference number: 6 (lower is better) Translates to: FPGPMAPIVNEH*PCSKSKPSSSS Trigger: CGAAGAAGAGGATGGTTTTGATTTTGAACAGGGGCAATGCTCATTTACTATTGGAGCCATGGGCCCTGGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS CCA 72 bp | ACGAACATCCCATATATCATCATGCTCTGCTCCTTCTaGAACCTCTTCTGGATTCCAGATGTTCTCACTTTC | + |
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Preference number: 6 (lower is better) Translates to: TNIPYIIMLCSF*NLFWIPDVLTF Trigger: GAAAGTGAGAACATCTGGAATCCAGAAGAGGTTCCAGAAGGAGCAGAGCATGATGATATATGGGATGTTCGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS GCA 72 bp | TGGAATTTCACGAACATCCCATATATCATCATGCTCTaGTCCTTCTGGAACCTCTTCTGGATTCCAGATGTT | + |
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Preference number: 6 (lower is better) Translates to: WNFTNIPYIIML*SFWNLFWIPDV Trigger: AACATCTGGAATCCAGAAGAGGTTCCAGAAGGAGCAGAGCATGATGATATATGGGATGTTCGTGAAATTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS CAA 72 bp | TTCTCACTTTCATCACTCCTGGGTTCAGGAATAGCTTaGGACTCTTTTGCTTTAGGTGGTCCAATATTCCCA | + |
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Preference number: 6 (lower is better) Translates to: FSLSSLLGSGIA*DSFALGGPIFP Trigger: TGGGAATATTGGACCACCTAAAGCAAAAGAGTCCAAAGCTATTCCTGAACCCAGGAGTGATGAAAGTGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS CAA 90 bp | CAGAAGACAATGTCACAAATTGCATATTTTTACCTTCCTTGCTCTTaGCTTCCAAATTCCCTGTTACCACATTCTCAGCTTCAGCATTTT | + |
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Preference number: 6 (lower is better) Translates to: QKTMSQIAYFYLPCS*LPNSLLPHSQLQHF Trigger: AAAATGCTGAAGCTGAGAATGTGGTAACAGGGAATTTGGAAGCAAAGAGCAAGGAAGGTAAAAATATGCAATTTGTGACATTGTCTTCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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| CDS CCA 72 bp | AGTTCCCACAGTTTGTTGGAATACAATCTCATAATCTaGAATTTCACGAACATCCCATATATCATCATGCTC | + |
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Preference number: 6 (lower is better) Translates to: SSHSLLEYNLII*NFTNIPYIIML Trigger: GAGCATGATGATATATGGGATGTTCGTGAAATTCCAGATTATGAGATTGTATTCCAACAAACTGTGGGAACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027230.3 |
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