RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DNA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036875

Ensembl transcript IDs: ENSMUST00000092462.12, ENSMUST00000131422.8

Found 229 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCGCTaGCAATCGCCCAGGATGTGGCTGAGGCTCTCATGCTCTCTGGAA +
Preference number: 1 (lower is better)
Translates to: VSAYAAAVSAVSQSR*QSPRMWLRLSCSLE
Trigger: TTCCAGAGAGCATGAGAGCCTCAGCCACATCCTGGGCGATTGTCAGCGAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR GCA 90 bp GGACACGCTGCCCAGCAGGATCAGTTTATGCTTGGCTCTGGTGAGTaGCACGTTGAGTCTCCGCCAATCTTTCAGGAGCTCGCCGAGAGT +
Preference number: 1 (lower is better)
Translates to: GHAAQQDQFMLGSGE*HVESPPIFQELAES
Trigger: ACTCTCGGCGAGCTCCTGAAAGATTGGCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCTGCTGGGCAGCGTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR GCA 90 bp GGGAAGCGCTTCAGCGAGGACACGCTGCCCAGCAGGATCAGTTTATaGTTGGCTCTGGTGAGTGCCACGTTGAGTCTCCGCCAATCTTTC +
Preference number: 1 (lower is better)
Translates to: GKRFSEDTLPSRISL*LALVSATLSLRQSF
Trigger: GAAAGATTGGCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCTGCTGGGCAGCGTGTCCTCGCTGAAGCGCTTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR CCA 90 bp AGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTaGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCA +
Preference number: 1 (lower is better)
Translates to: SLRVAFTENLSWSIS*RSLCLCRGSLRSVS
Trigger: TGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR-3UTR TCA 90 bp GCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCGCTGACCAAAGGACACCAGGATaGGACTCTTGTCCCTTCCTT +
Preference number: 2 (lower is better)
Translates to: AQSLPMPRQSPQCLSLADQRTPG*DSCPFL
Trigger: AAGGAAGGGACAAGAGTCTCATCCTGGTGTCCTTTG...GTCAGCGAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR CAA 90 bp CTGCCCAGCAGGATCAGTTTATGCTTGGCTCTGGTGAGTGCCACGTaGAGTCTCCGCCAATCTTTCAGGAGCTCGCCGAGAGTTCCATCC +
Preference number: 2 (lower is better)
Translates to: LPSRISLCLALVSAT*SLRQSFRSSPRVPS
Trigger: GGATGGAACTCTCGGCGAGCTCCTGAAAGATTGGCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCTGCTGGGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR CAA 90 bp AAGCGCTTCAGCGAGGACACGCTGCCCAGCAGGATCAGTTTATGCTaGGCTCTGGTGAGTGCCACGTTGAGTCTCCGCCAATCTTTCAGG +
Preference number: 2 (lower is better)
Translates to: KRFSEDTLPSRISLC*ALVSATLSLRQSFR
Trigger: CCTGAAAGATTGGCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCTGCTGGGCAGCGTGTCCTCGCTGAAGCGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR-3UTR GCA 90 bp TTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTTCAGCGAGGACACGCTaGCCAGCAGGATCAGTTTAT +
Preference number: 2 (lower is better)
Translates to: FKGGIHRKPQLEHLVAQSSARTR*PAGSVY
Trigger: ATAAACTGATCCTGCTGGGCAGCGTGTCCTCGCTGA...AGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR-3UTR CCA 90 bp AAAAGTCACCTTCAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATTGCTCTGCATTCAGATaGTCAAAGAGCGTCCCCAGA +
Preference number: 2 (lower is better)
Translates to: KSHLQFKGGIHRKPQLEHCSAFR*SKSVPR
Trigger: TCTGGGGACGCTCTTTGACCATCTGAATGCAGAGCA...ATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTGAAGGTGACTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR-3UTR CCA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCACAGAAAACCTCAGCTaGAGCATCTCGTGGCGCAGT +
Preference number: 2 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGTENLS*SISWRS
Trigger: ACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGT...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
3UTR CCA 72 bp GTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTaGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGC +
Preference number: 3 (lower is better)
Translates to: VAFTENLSWSIS*RSLCLCRGSLR
Trigger: GCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
3UTR GCA 72 bp TTCAGCGAGGACACGCTGCCCAGCAGGATCAGTTTATaGTTGGCTCTGGTGAGTGCCACGTTGAGTCTCCGC +
Preference number: 3 (lower is better)
Translates to: FSEDTLPSRISL*LALVSATLSLR
Trigger: GCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCTGCTGGGCAGCGTGTCCTCGCTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR TCA 72 bp TGTCTCAGTCTCGCTGACAATCGCCCAGGATGTGGCTaGGGCTCTCATGCTCTCTGGAAGGAAGGTCCAGGA +
Preference number: 3 (lower is better)
Translates to: CLSLADNRPGCG*GSHALWKEGPG
Trigger: TCCTGGACCTTCCTTCCAGAGAGCATGAGAGCCTCAGCCACATCCTGGGCGATTGTCAGCGAGACTGAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR GCA 72 bp GCCCAGCAGGATCAGTTTATGCTTGGCTCTGGTGAGTaGCACGTTGAGTCTCCGCCAATCTTTCAGGAGCTC +
Preference number: 3 (lower is better)
Translates to: AQQDQFMLGSGE*HVESPPIFQEL
Trigger: GAGCTCCTGAAAGATTGGCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCTGCTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
3UTR CCA 72 bp TTCAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTaGAGCATCTCGTGGCGCAGTCTCTGCCTATGCCGC +
Preference number: 3 (lower is better)
Translates to: FSLRVAFTENLS*SISWRSLCLCR
Trigger: GCGGCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
3UTR CCA 72 bp GATCTCCCTGGCACAGAGTGGCTTCAAGCAATGAGATaGGCCAGTCTGTCTGACTGTTTAAATGTAACTTGT +
Preference number: 3 (lower is better)
Translates to: DLPGTEWLQAMR*ASLSDCLNVTC
Trigger: ACAAGTTACATTTAAACAGTCAGACAGACTGGCCCATCTCATTGCTTGAAGCCACTCTGTGCCAGGGAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
3UTR TCA 72 bp CCAGGAAATCCCAAAATTCATAGAGTAATAGTCCTCTaGTCTCCCTGGCACAGAGTGGCTTCAAGCAATGAG +
Preference number: 3 (lower is better)
Translates to: PGNPKIHRVIVL*SPWHRVASSNE
Trigger: CTCATTGCTTGAAGCCACTCTGTGCCAGGGAGATCAGAGGACTATTACTCTATGAATTTTGGGATTTCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
3UTR TCA 72 bp AGAGTGGCTTCAAGCAATGAGATGGGCCAGTCTGTCTaGCTGTTTAAATGTAACTTGTATGATTTGGGAATC +
Preference number: 3 (lower is better)
Translates to: RVASSNEMGQSV*LFKCNLYDLGI
Trigger: GATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGCCCATCTCATTGCTTGAAGCCACTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
3UTR TCA 72 bp ATTTACGTAGTAACAGAAGAGAAAAATCTGGGACCTTaGAAACAGTACATTCACCTCCTTTGGGCTAAAAGT +
Preference number: 3 (lower is better)
Translates to: IYVVTEEKNLGP*KQYIHLLWAKS
Trigger: ACTTTTAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTTACTACGTAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
3UTR CCA 72 bp AGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTaGGAATCAGACCCGAAGTTGGTAGTTTCTTTTGTG +
Preference number: 3 (lower is better)
Translates to: SLSDCLNVTCMI*ESDPKLVVSFV
Trigger: CACAAAAGAAACTACCAACTTCGGGTCTGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp GTGGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCGCTGGCTTCTGGGATGGATaGGTCATCTCCCTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: VAQSLPMPRQSPQCLSLAGFWDG*VISLLF
Trigger: GAAGAGCAGGGAGATGACGCATCCATCCCAGAAGCC...AGCGAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CCA 90 bp CTTGGCTCTGGTGAGTGCCACGTTGAGTCTCCGCCAATCTTTCAGGAGCTCGCCCCGCGAAAAGAACAGTaGGCCCAGGCAGACGGGCTG +
Preference number: 4 (lower is better)
Translates to: LGSGECHVESPPIFQELAPRKEQ*AQADGL
Trigger: CAGCCCGTCTGCCTGGGCCCACTGTTCTTTTCGCGG...GGCGAGCTCCTGAAAGATTGGCGGAGACTCAACGTGGCACTCACCAGAGCCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR GCA 90 bp CTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTTCAGCGAGGACACGCTaGCCAGCAGGATCAGTTTAT +
Preference number: 4 (lower is better)
Translates to: LEHLVAQSLPMPRQSPQCSARTR*PAGSVY
Trigger: ATAAACTGATCCTGCTGGGCAGCGTGTCCTCGCTGA...ACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAGATGCTCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTTCACCAGGGCACAGATaGTGGTTGTCTTTCCTGTCC +
Preference number: 4 (lower is better)
Translates to: LEHLVAQSLPMPRQSPQCSPGHR*WLSFLS
Trigger: GGACAGGAAAGACAACCACCATCTGTGCCCTGGTGA...ACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAGATGCTCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp AACTGCTCTGCATTCAGATGGTCAAAGAGCGTCCCCAGAGGCGGGAAGCGCTTCCTGGATCAGAGCCCCTaGAGGTCTCGCTCAGGACAG +
Preference number: 4 (lower is better)
Translates to: NCSAFRWSKSVPRGGKRFLDQSP*RSRSGQ
Trigger: CTGTCCTGAGCGAGACCTTCAGGGGCTCTGATCCAG...GAAGCGCTTCCCGCCTCTGGGGACGCTCTTTGACCATCTGAATGCAGAGCAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR GCA 90 bp GCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCGCTGACGCTCCTCTTTCATTCTaGGAGGTCTCAACAGCTAGC +
Preference number: 4 (lower is better)
Translates to: AQSLPMPRQSPQCLSLADAPLSF*EVSTAS
Trigger: GCTAGCTGTTGAGACCTCGCAGAATGAAAGAGGAGC...GTCAGCGAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CCA 90 bp CTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTTGTCTTTCCTGTCCCTaGCATCCCAACAATGAGCGT +
Preference number: 4 (lower is better)
Translates to: LEHLVAQSLPMPRQSPQCCLSCP*HPNNER
Trigger: ACGCTCATTGTTGGGATGCCAGGGACAGGAAAGACA...ACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAGATGCTCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp CAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGCGCCCAGGATGTGGCTaGGGCTCTCATGCTCTCTGG +
Preference number: 4 (lower is better)
Translates to: QFKGGIHRKPQLEHLVAQRPGCG*GSHALW
Trigger: CCAGAGAGCATGAGAGCCTCAGCCACATCCTGGGCG...CTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp CTTGGCTCTGGTGAGTGCCACGTTGAGTCTCCGCCAATCTTTCAGGAGCTCGCCTGCGCCAGCTGCAGGTaGCGTGTTTCTTCCTGGATT +
Preference number: 4 (lower is better)
Translates to: LGSGECHVESPPIFQELACASCR*RVSSWI
Trigger: AATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCA...GGCGAGCTCCTGAAAGATTGGCGGAGACTCAACGTGGCACTCACCAGAGCCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CCA 90 bp CGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCGCTGACATTTTGTCCAGATGGTTaGCGGGCACAGGGTACATCT +
Preference number: 4 (lower is better)
Translates to: RSLCLCRGSLRSVSVSLTFCPDG*RAQGTS
Trigger: AGATGTACCCTGTGCCCGCCAACCATCTGGACAAAA...TGTCAGCGAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CCA 90 bp CTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTTGCCGTGTTTCTTCCTaGATTTTGGACAGCATGGCT +
Preference number: 4 (lower is better)
Translates to: LEHLVAQSLPMPRQSPQCCRVSS*ILDSMA
Trigger: AGCCATGCTGTCCAAAATCCAGGAAGAAACACGGCA...ACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAGATGCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCGCTGACATGTCTTTCCTGTCCCTaGCATCCCAACAATGAGCGT +
Preference number: 4 (lower is better)
Translates to: RSLCLCRGSLRSVSVSLTCLSCP*HPNNER
Trigger: ACGCTCATTGTTGGGATGCCAGGGACAGGAAAGACA...TGTCAGCGAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CCA 90 bp CAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGCCGCGAAAAGAACAGTaGGCCCAGGCAGACGGGCTG +
Preference number: 4 (lower is better)
Translates to: QFKGGIHRKPQLEHLVAQPRKEQ*AQADGL
Trigger: CAGCCCGTCTGCCTGGGCCCACTGTTCTTTTCGCGG...CTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
3UTR CAA 72 bp AGCGAGGACACGCTGCCCAGCAGGATCAGTTTATGCTaGGCTCTGGTGAGTGCCACGTTGAGTCTCCGCCAA +
Preference number: 4 (lower is better)
Translates to: SEDTLPSRISLC*ALVSATLSLRQ
Trigger: TTGGCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCTGCTGGGCAGCGTGTCCTCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR TCA 90 bp CAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGGATGACGCCAATGTCTaGGGGGCTGCAGCCTGCCTT +
Preference number: 4 (lower is better)
Translates to: QFKGGIHRKPQLEHLVAQDDANV*GAAACL
Trigger: AAGGCAGGCTGCAGCCCCTCAGACATTGGCGTCATC...CTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp GCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCGCTGACTACATTTCCTTCAAATaGCTCACTTCTCGGAGGGTC +
Preference number: 4 (lower is better)
Translates to: AQSLPMPRQSPQCLSLADYISFK*LTSRRV
Trigger: GACCCTCCGAGAAGTGAGGCATTTGAAGGAAATGTA...GTCAGCGAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CCA 90 bp GGCGGGAAGCGCTTCAGCGAGGACACGCTGCCCAGCAGGATCAGTTTATGCTTGGGATTTTGGACAGCATaGCTTCTGGGATGGATGCGT +
Preference number: 4 (lower is better)
Translates to: GGKRFSEDTLPSRISLCLGFWTA*LLGWMR
Trigger: ACGCATCCATCCCAGAAGCCATGCTGTCCAAAATCC...CAAGCATAAACTGATCCTGCTGGGCAGCGTGTCCTCGCTGAAGCGCTTCCCGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CCA 90 bp GGCGGGAAGCGCTTCAGCGAGGACACGCTGCCCAGCAGGATCAGTTTATGCTTGCTGCCATCAGATTGGTaGCTGGCATGGGACCATTTT +
Preference number: 4 (lower is better)
Translates to: GGKRFSEDTLPSRISLCLLPSDW*LAWDHF
Trigger: AAAATGGTCCCATGCCAGCCACCAATCTGATGGCAG...CAAGCATAAACTGATCCTGCTGGGCAGCGTGTCCTCGCTGAAGCGCTTCCCGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR GCA 90 bp CATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCCACAAGCTCTCGCTCATaGCCAGAGCTCTTGCCTCTC +
Preference number: 4 (lower is better)
Translates to: HSQKTSAGASRGAVSAYATSSRS*PELLPL
Trigger: GAGAGGCAAGAGCTCTGGGCATGAGCGAGAGCTTGT...GGCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp GTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTACCAGGGCACAGATGGTaGTTGTCTTTCCTGTCCCTG +
Preference number: 4 (lower is better)
Translates to: VAFTENLSWSISWRSLCLPGHRW*LSFLSL
Trigger: CAGGGACAGGAAAGACAACCACCATCTGTGCCCTGG...TAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CCCAGCAGGATCAGTTTATGCTTGGCTCTGGTGAGTGCCACGTTGAGTCTCCGCTCACCAGGGCACAGATaGTGGTTGTCTTTCCTGTCC +
Preference number: 4 (lower is better)
Translates to: PSRISLCLALVSATLSLRSPGHR*WLSFLS
Trigger: GGACAGGAAAGACAACCACCATCTGTGCCCTGGTGA...GCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCTGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CCA 90 bp CTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTTCCTCTGTAAACTTCTaGATGTCTGGATGGACCTTA +
Preference number: 4 (lower is better)
Translates to: LEHLVAQSLPMPRQSPQCSSVNF*MSGWTL
Trigger: TAAGGTCCATCCAGACATCCAGAAGTTTACAGAGGA...ACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAGATGCTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp CTCGTGGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCCGATATCCAGTGACTTaGCTACTTCAATGTTACAAG +
Preference number: 4 (lower is better)
Translates to: LVAQSLPMPRQSPQCLSLRYPVT*LLQCYK
Trigger: CTTGTAACATTGAAGTAGTCAAGTCACTGGATATCG...GAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR TCA 90 bp TTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTACATCTGCCCGGTCTTaGGGTAGAGAAGCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: FKGGIHRKPQLEHLVAQSTSARS*GREASQ
Trigger: CTGGCTGGCTTCTCTACCTCAAGACCGGGCAGATGT...AGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp CAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGCGGCCAGCCAGTTCCTaGGCTTCAGCAGTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: QFKGGIHRKPQLEHLVAQRPASS*ASAVLF
Trigger: AAAGAGAACTGCTGAAGCTCAGGAACTGGCTGGCCG...CTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp TTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTTGGTCAGCAGAACGCTaGACCCACAGGCAGAGAGGA +
Preference number: 4 (lower is better)
Translates to: FKGGIHRKPQLEHLVAQSWSAER*THRQRG
Trigger: TCCTCTCTGCCTGTGGGTTCAGCGTTCTGCTGACCA...AGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
3UTR CAA 72 bp AGGATCAGTTTATGCTTGGCTCTGGTGAGTGCCACGTaGAGTCTCCGCCAATCTTTCAGGAGCTCGCCGAGA +
Preference number: 4 (lower is better)
Translates to: RISLCLALVSAT*SLRQSFRSSPR
Trigger: TCTCGGCGAGCTCCTGAAAGATTGGCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR TCA 90 bp GGCGGGAAGCGCTTCAGCGAGGACACGCTGCCCAGCAGGATCAGTTTATGCTTGCGGGAAAATATTGGGTaGTTTATTCCCATGCAGGTT +
Preference number: 4 (lower is better)
Translates to: GGKRFSEDTLPSRISLCLRENIG*FIPMQV
Trigger: AACCTGCATGGGAATAAATCACCCAATATTTTCCCG...CAAGCATAAACTGATCCTGCTGGGCAGCGTGTCCTCGCTGAAGCGCTTCCCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR GCA 90 bp TTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTGGCTTCTGGGATGGATaGGTCATCTCCCTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: FKGGIHRKPQLEHLVAQSGFWDG*VISLLF
Trigger: GAAGAGCAGGGAGATGACGCATCCATCCCAGAAGCC...AGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CCCAGCAGGATCAGTTTATGCTTGGCTCTGGTGAGTGCCACGTTGAGTCTCCGCAACTTGCTCTGGAGCTaGGACCTTGTCTGTGTTAAG +
Preference number: 4 (lower is better)
Translates to: PSRISLCLALVSATLSLRNLLWS*DLVCVK
Trigger: CTTAACACAGACAAGGTCCCAGCTCCAGAGCAAGTT...GCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCTGCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR TCA 90 bp GCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCACGGGCTGGCTGATTTaGGATGCTTCATCCACAATA +
Preference number: 4 (lower is better)
Translates to: AFTENLSWSISWRSLCLCTGWLI*DASSTI
Trigger: TATTGTGGATGAAGCATCTCAAATCAGCCAGCCCGT...GCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp GCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCAGACCCGAGGGGAGGCAGCTGCTaGTGGTCCCCCACCAGCACA +
Preference number: 4 (lower is better)
Translates to: ASLSDCLNVTCMIWESDPRGGSC*WSPTST
Trigger: TGTGCTGGTGGGGGACCATCAGCAGCTGCCTCCCCT...CGGGTCTGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp AGTACAGACCCCAAGGCTAACCCACAACTTAAAGTGGAAAATCTTATGGTTTTTGCTCGGCTCACACGGTaGAGCAGCGAGGCGGCCAGC +
Preference number: 4 (lower is better)
Translates to: STDPKANPQLKVENLMVFARLTR*SSEAAS
Trigger: GCTGGCCGCCTCGCTGCTGCACCGTGTGAGCCGAGC...AAAAACCATAAGATTTTCCACTTTAAGTTGTGGGTTAGCCTTGGGGTCTGTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp AACTGCTCTGCATTCAGATGGTCAAAGAGCGTCCCCAGAGGCGGGAAGCGCTTCTCCCTGCTCTTCAACTaGTCTGCTATAAAGAGCACA +
Preference number: 4 (lower is better)
Translates to: NCSAFRWSKSVPRGGKRFSLLFN*SAIKST
Trigger: TGTGCTCTTTATAGCAGAGCAGTTGAAGAGCAGGGA...GAAGCGCTTCCCGCCTCTGGGGACGCTCTTTGACCATCTGAATGCAGAGCAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR GCA 90 bp CGCCAATCTTTCAGGAGCTCGCCGAGAGTTCCATCCTCATTACTCCTAACAAAGACAAGCTCTCGCTCATaGCCAGAGCTCTTGCCTCTC +
Preference number: 4 (lower is better)
Translates to: RQSFRSSPRVPSSLLLTKTSSRS*PELLPL
Trigger: GAGAGGCAAGAGCTCTGGGCATGAGCGAGAGCTTGT...CTTTGTTAGGAGTAATGAGGATGGAACTCTCGGCGAGCTCCTGAAAGATTGGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR TCA 90 bp AAAAGTCACCTTCAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTGGATCAGAGCCCCTaGAGGTCTCGCTCAGGACAG +
Preference number: 4 (lower is better)
Translates to: KSHLQFKGGIHRKPQLEHLDQSP*RSRSGQ
Trigger: CTGTCCTGAGCGAGACCTTCAGGGGCTCTGATCCAG...ATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTGAAGGTGACTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp GTTCCATCCTCATTACTCCTAACAAAGGACACCAGGATGAGACTCTTGTCCCTTTCCGCTCCAGCCTCTTaGACAAGCTCTCGCTCATGC +
Preference number: 4 (lower is better)
Translates to: VPSSLLLTKDTRMRLLSLSAPAS*TSSRSC
Trigger: GCATGAGCGAGAGCTTGTTCAAGAGGCTGGAGCGGA...AAGGGACAAGAGTCTCATCCTGGTGTCCTTTGTTAGGAGTAATGAGGATGGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR GCA 90 bp GCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCTACATTTCCTTCAAATaGCTCACTTCTCGGAGGGTC +
Preference number: 4 (lower is better)
Translates to: AFTENLSWSISWRSLCLCYISFK*LTSRRV
Trigger: GACCCTCCGAGAAGTGAGGCATTTGAAGGAAATGTA...GCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp TCTTTCAGGAGCTCGCCGAGAGTTCCATCCTCATTACTCCTAACAAAGGACACCCTGAAATACTTCAAGTaGGCCAGCTGCAGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: SFRSSPRVPSSLLLTKDTLKYFK*ASCRCR
Trigger: ACGGCACCTGCAGCTGGCGCACTTGAAGTATTTCAG...GGTGTCCTTTGTTAGGAGTAATGAGGATGGAACTCTCGGCGAGCTCCTGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CCA 90 bp GCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCAACCCTTTAGAATGTTaGCCACCGTATCCTTCGCAT +
Preference number: 4 (lower is better)
Translates to: AFTENLSWSISWRSLCLCNPLEC*PPYPSH
Trigger: ATGCGAAGGATACGGTGGCCAACATTCTAAAGGGTT...GCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp GAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCTTAAGGGGAGGCAGCTGCTaGTGGTCCCCCACCAGCACA +
Preference number: 4 (lower is better)
Translates to: EVGSFFCELSALSYNGTLRGGSC*WSPTST
Trigger: TGTGCTGGTGGGGGACCATCAGCAGCTGCCTCCCCT...TAAGGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp AAAAGTCACCTTCAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATTCCGCTCCAGCCTCTTaGACAAGCTCTCGCTCATGC +
Preference number: 4 (lower is better)
Translates to: KSHLQFKGGIHRKPQLEHSAPAS*TSSRSC
Trigger: GCATGAGCGAGAGCTTGTTCAAGAGGCTGGAGCGGA...ATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTGAAGGTGACTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp GTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTATCCTCTGTAAACTTCTaGATGTCTGGATGGACCTTA +
Preference number: 4 (lower is better)
Translates to: VAFTENLSWSISWRSLCLSSVNF*MSGWTL
Trigger: TAAGGTCCATCCAGACATCCAGAAGTTTACAGAGGA...TAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp CATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCCTCACTTATCGCTTTCTaGAAGACTTCGTGGAGAATT +
Preference number: 4 (lower is better)
Translates to: HSQKTSAGASRGAVSAYASLIAF*KTSWRI
Trigger: AATTCTCCACGAAGTCTTTCAGAAAGCGATAAGTGA...GGCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp GCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCCGATATCCAGTGACTTaGCTACTTCAATGTTACAAG +
Preference number: 4 (lower is better)
Translates to: AFTENLSWSISWRSLCLCRYPVT*LLQCYK
Trigger: CTTGTAACATTGAAGTAGTCAAGTCACTGGATATCG...GCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp CCCGAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCCGGCCAGCCAGTTCCTaGGCTTCAGCAGTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: PEVGSFFCELSALSYNGTRPASS*ASAVLF
Trigger: AAAGAGAACTGCTGAAGCTCAGGAACTGGCTGGCCG...GGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTCGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTATGGCTGAGGCTCTCATaGTCTCTGGAAGGAAGGTCC +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLWLRLS*SLEGRS
Trigger: GGACCTTCCTTCCAGAGAGCATGAGAGCCTCAGCCA...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTAGTACCGATCAGCATCTaGCGAGTGGCTGGATCAGAG +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLVPISI*RVAGSE
Trigger: CTCTGATCCAGCCACTCGCCAGATGCTGATCGGTAC...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp GAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCTTAACATCTGCCCGGTCTTaGGGTAGAGAAGCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: EVGSFFCELSALSYNGTLTSARS*GREASQ
Trigger: CTGGCTGGCTTCTCTACCTCAAGACCGGGCAGATGT...TAAGGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTAATACAGGCTCCGTCCTaGCCAGGTTTCCAACACAGT +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLIQAPS*PGFQHS
Trigger: ACTGTGTTGGAAACCTGGTCAGGACGGAGCCTGTAT...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp AGTACAGACCCCAAGGCTAACCCACAACTTAAAGTGGAAAATCTTATGGTTTTTTGGTCAGCAGAACGCTaGACCCACAGGCAGAGAGGA +
Preference number: 4 (lower is better)
Translates to: STDPKANPQLKVENLMVFWSAER*THRQRG
Trigger: TCCTCTCTGCCTGTGGGTTCAGCGTTCTGCTGACCA...AAAAACCATAAGATTTTCCACTTTAAGTTGTGGGTTAGCCTTGGGGTCTGTACT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTACTGAAATACTTCAAGTaGGCCAGCTGCAGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLLKYFK*ASCRCR
Trigger: ACGGCACCTGCAGCTGGCGCACTTGAAGTATTTCAG...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp GCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCAGACCCGTCTCTTTTGTCCAGATaGTTGGCGGGCACAGGGTAC +
Preference number: 4 (lower is better)
Translates to: ASLSDCLNVTCMIWESDPSLLSR*LAGTGY
Trigger: GTACCCTGTGCCCGCCAACCATCTGGACAAAAGAGA...CGGGTCTGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTATCTCTTTTGTCCAGATaGTTGGCGGGCACAGGGTAC +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLSLLSR*LAGTGY
Trigger: GTACCCTGTGCCCGCCAACCATCTGGACAAAAGAGA...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp GCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCTTTTCGGGAAAATATTaGGTGATTTATTCCCATGCA +
Preference number: 4 (lower is better)
Translates to: AFTENLSWSISWRSLCLCFSGKY*VIYSHA
Trigger: TGCATGGGAATAAATCACCCAATATTTTCCCGAAAA...GCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTAAGAGAGAGCTGCATTTaGGGGAATTCAGACGAAGGG +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLRESCI*GNSDEG
Trigger: CCCTTCGTCTGAATTCCCTCAAATGCAGCTCTCTCT...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp AAAAGTCACCTTCAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATACGGGCTGGCTGATTTaGGATGCTTCATCCACAATA +
Preference number: 4 (lower is better)
Translates to: KSHLQFKGGIHRKPQLEHTGWLI*DASSTI
Trigger: TATTGTGGATGAAGCATCTCAAATCAGCCAGCCCGT...ATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTGAAGGTGACTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp GCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCAGACCCGCAAAGGACACCAGGATaGGACTCTTGTCCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: ASLSDCLNVTCMIWESDPQRTPG*DSCPFL
Trigger: AAGGAAGGGACAAGAGTCTCATCCTGGTGTCCTTTG...CGGGTCTGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp TCTTTCAGGAGCTCGCCGAGAGTTCCATCCTCATTACTCCTAACAAAGGACACCGCACAGTTGCCTATCTaGGAACAGTATTTACAAGTT +
Preference number: 4 (lower is better)
Translates to: SFRSSPRVPSSLLLTKDTAQLPI*EQYLQV
Trigger: AACTTGTAAATACTGTTCGCAGATAGGCAACTGTGC...GGTGTCCTTTGTTAGGAGTAATGAGGATGGAACTCTCGGCGAGCTCCTGAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR GCA 90 bp AGTACAGACCCCAAGGCTAACCCACAACTTAAAGTGGAAAATCTTATGGTTTTTTGCGCCAGCTGCAGGTaGCGTGTTTCTTCCTGGATT +
Preference number: 4 (lower is better)
Translates to: STDPKANPQLKVENLMVFCASCR*RVSSWI
Trigger: AATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCA...AAAAACCATAAGATTTTCCACTTTAAGTTGTGGGTTAGCCTTGGGGTCTGTACT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp AGATGGGCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCAGTACCGATCAGCATCTaGCGAGTGGCTGGATCAGAG +
Preference number: 4 (lower is better)
Translates to: RWASLSDCLNVTCMIWESVPISI*RVAGSE
Trigger: CTCTGATCCAGCCACTCGCCAGATGCTGATCGGTAC...TGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGCCCATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCGGATTTTGGACAGCATaGCTTCTGGGATGGATGCGT +
Preference number: 4 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGGFWTA*LLGWMR
Trigger: ACGCATCCATCCCAGAAGCCATGCTGTCCAAAATCC...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp GAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCTTACCAGGGCACAGATGGTaGTTGTCTTTCCTGTCCCTG +
Preference number: 4 (lower is better)
Translates to: EVGSFFCELSALSYNGTLPGHRW*LSFLSL
Trigger: CAGGGACAGGAAAGACAACCACCATCTGTGCCCTGG...TAAGGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CCCGAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCAACTTGCTCTGGAGCTaGGACCTTGTCTGTGTTAAG +
Preference number: 4 (lower is better)
Translates to: PEVGSFFCELSALSYNGTNLLWS*DLVCVK
Trigger: CTTAACACAGACAAGGTCCCAGCTCCAGAGCAAGTT...GGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTCGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTAGGCTCTCATGCTCTCTaGAAGGAAGGTCCAGGATTA +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLGSHAL*KEGPGL
Trigger: TAATCCTGGACCTTCCTTCCAGAGAGCATGAGAGCC...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp AAAAGTCACCTTCAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATTCCCTGCTCTTCAACTaGTCTGCTATAAAGAGCACA +
Preference number: 4 (lower is better)
Translates to: KSHLQFKGGIHRKPQLEHSLLFN*SAIKST
Trigger: TGTGCTCTTTATAGCAGAGCAGTTGAAGAGCAGGGA...ATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTGAAGGTGACTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CCCGAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCAACCCTTTAGAATGTTaGCCACCGTATCCTTCGCAT +
Preference number: 4 (lower is better)
Translates to: PEVGSFFCELSALSYNGTNPLEC*PPYPSH
Trigger: ATGCGAAGGATACGGTGGCCAACATTCTAAAGGGTT...GGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTCGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
3UTR CAA 72 bp CCCGAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTaGAGCTATAATGGAACCTTAGGCATTGCAGTACAG +
Preference number: 4 (lower is better)
Translates to: PEVGSFFCELSA*SYNGTLGIAVQ
Trigger: CTGTACTGCAATGCCTAAGGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTCGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp AGATGGGCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCAGCTCCTCTTTCATTCTaGGAGGTCTCAACAGCTAGC +
Preference number: 4 (lower is better)
Translates to: RWASLSDCLNVTCMIWESAPLSF*EVSTAS
Trigger: GCTAGCTGTTGAGACCTCGCAGAATGAAAGAGGAGC...TGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGCCCATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTAGCTCTTCAACTGCTCTaGTATAAAGAGCACAGTTGC +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLALQLL*YKEHSC
Trigger: GCAACTGTGCTCTTTATAGCAGAGCAGTTGAAGAGC...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCGCTCTTCAACTGCTCTaGTATAAAGAGCACAGTTGC +
Preference number: 4 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGALQLL*YKEHSC
Trigger: GCAACTGTGCTCTTTATAGCAGAGCAGTTGAAGAGC...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp GAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCTTACTGCCATCAGATTGGTaGCTGGCATGGGACCATTTT +
Preference number: 4 (lower is better)
Translates to: EVGSFFCELSALSYNGTLLPSDW*LAWDHF
Trigger: AAAATGGTCCCATGCCAGCCACCAATCTGATGGCAG...TAAGGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp AGATGGGCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCATGCTCTGCATTCAGATaGTCAAAGAGCGTCCCCAGA +
Preference number: 4 (lower is better)
Translates to: RWASLSDCLNVTCMIWESCSAFR*SKSVPR
Trigger: TCTGGGGACGCTCTTTGACCATCTGAATGCAGAGCA...TGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGCCCATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp GCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCAGACCCGCGGGAAAATATTGGGTaGTTTATTCCCATGCAGGTT +
Preference number: 4 (lower is better)
Translates to: ASLSDCLNVTCMIWESDPRENIG*FIPMQV
Trigger: AACCTGCATGGGAATAAATCACCCAATATTTTCCCG...CGGGTCTGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTCACTTATCGCTTTCTaGAAGACTTCGTGGAGAATT +
Preference number: 4 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGSLIAF*KTSWRI
Trigger: AATTCTCCACGAAGTCTTTCAGAAAGCGATAAGTGA...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTTCAATGTTACAAGGTaGACTTCTGTTACTGCCATC +
Preference number: 4 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGFNVTR*TSVTAI
Trigger: GATGGCAGTAACAGAAGTTCACCTTGTAACATTGAA...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTATTCAATGTTACAAGGTaGACTTCTGTTACTGCCATC +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLFNVTR*TSVTAI
Trigger: GATGGCAGTAACAGAAGTTCACCTTGTAACATTGAA...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp AAAAGTCACCTTCAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATTTCTTCGATATCCAGTaGCTTGACTACTTCAATGTT +
Preference number: 4 (lower is better)
Translates to: KSHLQFKGGIHRKPQLEHFFDIQ*LDYFNV
Trigger: AACATTGAAGTAGTCAAGTCACTGGATATCGAAGAA...ATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTGAAGGTGACTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCGCACAGTTGCCTATCTaGGAACAGTATTTACAAGTT +
Preference number: 4 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGAQLPI*EQYLQV
Trigger: AACTTGTAAATACTGTTCGCAGATAGGCAACTGTGC...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTACTGGCTGATTTGAGATaGTTCATCCACAATACAGAA +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLLADLR*FIHNTE
Trigger: TTCTGTATTGTGGATGAAGCATCTCAAATCAGCCAG...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTACAGAGTATTTCATCTTaGCTCAGATTCAAGCGATAC +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLQSISS*LRFKRY
Trigger: GTATCGCTTGAATCTGAGCCAAGATGAAATACTCTG...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp GCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCAGACCCGCTCTTGTCCCTTCCTTaGTATTTGTCTACTGTGTTA +
Preference number: 4 (lower is better)
Translates to: ASLSDCLNVTCMIWESDPLLSLP*YLSTVL
Trigger: TAACACAGTAGACAAATACCAAGGAAGGGACAAGAG...CGGGTCTGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS-3UTR TCA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTTCTTCGATATCCAGTaGCTTGACTACTTCAATGTT +
Preference number: 4 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGFFDIQ*LDYFNV
Trigger: AACATTGAAGTAGTCAAGTCACTGGATATCGAAGAA...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR GCA 90 bp AGATGGGCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCACTGGCTGATTTGAGATaGTTCATCCACAATACAGAA +
Preference number: 4 (lower is better)
Translates to: RWASLSDCLNVTCMIWESLADLR*FIHNTE
Trigger: TTCTGTATTGTGGATGAAGCATCTCAAATCAGCCAG...TGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGCCCATCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp AGATGGGCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCACAGAGTATTTCATCTTaGCTCAGATTCAAGCGATAC +
Preference number: 4 (lower is better)
Translates to: RWASLSDCLNVTCMIWESQSISS*LRFKRY
Trigger: GTATCGCTTGAATCTGAGCCAAGATGAAATACTCTG...TGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGCCCATCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CCA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTATTTTCGGGAAAATATTaGGTGATTTATTCCCATGCA +
Preference number: 4 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLFSGKY*VIYSHA
Trigger: TGCATGGGAATAAATCACCCAATATTTTCCCGAAAA...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 90 bp GCAGAGAGCCGAGCTTCCTCCCCCGGAGCTGCTCGGCTCACACGGTaGAGCAGCGAGGCGGCCAGCCAGTTCCTGAGCTTCAGCAGTTCT +
Preference number: 5 (lower is better)
Translates to: AESRASSPGAARLTR*SSEAASQFLSFSSS
Trigger: AGAACTGCTGAAGCTCAGGAACTGGCTGGCCGCCTCGCTGCTGCACCGTGTGAGCCGAGCAGCTCCGGGGGAGGAAGCTCGGCTCTCTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp GGCGGGAAGCGCTTCAGCGAGGACACGCTGCCCAGCAGGATCAGTTTATGCTTGCTTGCGTCCTTGAGGTaGGGCAGGGCTAGCACTGCG +
Preference number: 5 (lower is better)
Translates to: GGKRFSEDTLPSRISLCLLASLR*GRASTA
Trigger: CGCAGTGCTAGCCCTGCCCAACCTCAAGGACGCAAG...CAAGCATAAACTGATCCTGCTGGGCAGCGTGTCCTCGCTGAAGCGCTTCCCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS TCA 90 bp TTTTGTCCAGATGGTTGGCGGGCACAGGGTACATCTGCCCGGTCTTaGGGTAGAGAAGCCAGCCAGCCTCGGGGTCCTCTCGCCTCTCCT +
Preference number: 5 (lower is better)
Translates to: FCPDGWRAQGTSARS*GREASQPRGPLASP
Trigger: AGGAGAGGCGAGAGGACCCCGAGGCTGGCTGGCTTCTCTACCTCAAGACCGGGCAGATGTACCCTGTGCCCGCCAACCATCTGGACAAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 90 bp GCACGGTCAGCTGCACCACAGCGCTCTCGTTCCGCTCCAGCCTCTTaGACAAGCTCTCGCTCATGCCCAGAGCTCTTGCCTCTCGGTTTA +
Preference number: 5 (lower is better)
Translates to: ARSAAPQRSRSAPAS*TSSRSCPELLPLGL
Trigger: TAAACCGAGAGGCAAGAGCTCTGGGCATGAGCGAGAGCTTGTTCAAGAGGCTGGAGCGGAACGAGAGCGCTGTGGTGCAGCTGACCGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 90 bp CTGCTGATGGTCCCCCACCAGCACAAACCTCCGCGAAAAGAACAGTaGGCCCAGGCAGACGGGCTGGCTGATTTGAGATGCTTCATCCAC +
Preference number: 5 (lower is better)
Translates to: LLMVPHQHKPPRKEQ*AQADGLADLRCFIH
Trigger: GTGGATGAAGCATCTCAAATCAGCCAGCCCGTCTGCCTGGGCCCACTGTTCTTTTCGCGGAGGTTTGTGCTGGTGGGGGACCATCAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 90 bp GAATATTGTCAACGGCGGAGTGCGTGTAGCTGGTCAGCAGAACGCTaGACCCACAGGCAGAGAGGATCCTCACCAGGGCACAGATGGTGG +
Preference number: 5 (lower is better)
Translates to: EYCQRRSACSWSAER*THRQRGSSPGHRWW
Trigger: CCACCATCTGTGCCCTGGTGAGGATCCTCTCTGCCTGTGGGTTCAGCGTTCTGCTGACCAGCTACACGCACTCCGCCGTTGACAATATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 90 bp GACGCCGTGACGTGCAAGCGCTTCTCCTCGGCTCCTCTTTCATTCTaGGAGGTCTCAACAGCTAGCACCAGGTACCGGTTATCCACTCCT +
Preference number: 5 (lower is better)
Translates to: DAVTCKRFSSAPLSF*EVSTASTRYRLSTP
Trigger: AGGAGTGGATAACCGGTACCTGGTGCTAGCTGTTGAGACCTCGCAGAATGAAAGAGGAGCCGAGGAGAAGCGCTTGCACGTCACGGCGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp CTCGTGGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCAAACCCTTTAGAATGTaGGCCACCGTATCCTTCGCA +
Preference number: 5 (lower is better)
Translates to: LVAQSLPMPRQSPQCLSLKPFRM*ATVSFA
Trigger: TGCGAAGGATACGGTGGCCAACATTCTAAAGGGTTT...GAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp CTCGTGGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCACTGTGACGTCTATTTaGCCCTTCAGTCCAAACCTA +
Preference number: 5 (lower is better)
Translates to: LVAQSLPMPRQSPQCLSLTVTSI*PFSPNL
Trigger: TAGGTTTGGACTGAAGGGCAAAATAGACGTCACAGT...GAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp TTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTTGCGTCCTTGAGGTaGGGCAGGGCTAGCACTGCG +
Preference number: 5 (lower is better)
Translates to: FKGGIHRKPQLEHLVAQSLASLR*GRASTA
Trigger: CGCAGTGCTAGCCCTGCCCAACCTCAAGGACGCAAG...AGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 90 bp GTGAGCTTGTTGCTCAGGGACATAATCTTCCTGTTCATTCGGTATTaGACGGTCAGCTGCACCACAGCGCTCTCGTTCCGCTCCAGCCTC +
Preference number: 5 (lower is better)
Translates to: VSLLLRDIIFLFIRY*TVSCTTALSFRSSL
Trigger: GAGGCTGGAGCGGAACGAGAGCGCTGTGGTGCAGCTGACCGTGCAATACCGAATGAACAGGAAGATTATGTCCCTGAGCAACAAGCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 90 bp GGTGAACTTCTGTTACTGCCATCGCTTGGCAGAGAGAGCTGCATTTaGGGGAATTCAGACGAAGGGCCCTTACGCATGAAGTCCTCCGCC +
Preference number: 5 (lower is better)
Translates to: GELLLLPSLGRESCI*GNSDEGPLRMKSSA
Trigger: GGCGGAGGACTTCATGCGTAAGGGCCCTTCGTCTGAATTCCCTCAAATGCAGCTCTCTCTGCCAAGCGATGGCAGTAACAGAAGTTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 90 bp CTCAGGGACATAATCTTCCTGTTCATTCGGTATTGCACGGTCAGCTaGACCACAGCGCTCTCGTTCCGCTCCAGCCTCTTGAACAAGCTC +
Preference number: 5 (lower is better)
Translates to: LRDIIFLFIRYCTVS*TTALSFRSSLLNKL
Trigger: GAGCTTGTTCAAGAGGCTGGAGCGGAACGAGAGCGCTGTGGTGCAGCTGACCGTGCAATACCGAATGAACAGGAAGATTATGTCCCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 90 bp AAAGACTTCGTGGAGAATTGTACCGATCAGCATCTGGCGAGTGGCTaGATCAGAGCCCCTGAAGGTCTCGCTCAGGACAGCTCTTCTCAG +
Preference number: 5 (lower is better)
Translates to: KDFVENCTDQHLASG*IRAPEGLAQDSSSQ
Trigger: CTGAGAAGAGCTGTCCTGAGCGAGACCTTCAGGGGCTCTGATCCAGCCACTCGCCAGATGCTGATCGGTACAATTCTCCACGAAGTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 90 bp ACTTCAAGTGCGCCAGCTGCAGGTGCCGTGTTTCTTCCTGGATTTTaGACAGCATGGCTTCTGGGATGGATGCGTCATCTCCCTGCTCTT +
Preference number: 5 (lower is better)
Translates to: TSSAPAAGAVFLPGF*TAWLLGWMRHLPAL
Trigger: AAGAGCAGGGAGATGACGCATCCATCCCAGAAGCCATGCTGTCCAAAATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCACTTGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AGGATTAACTGCTCTGCATTCAGATGGTCAAAGAGCGTCCCCAGAGGCGGGAAGCTTTTGTCCAGATGGTaGGCGGGCACAGGGTACATC +
Preference number: 5 (lower is better)
Translates to: RINCSAFRWSKSVPRGGKLLSRW*AGTGYI
Trigger: GATGTACCCTGTGCCCGCCAACCATCTGGACAAAAG...CTTCCCGCCTCTGGGGACGCTCTTTGACCATCTGAATGCAGAGCAGTTAATCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp CCCAGCAGGATCAGTTTATGCTTGGCTCTGGTGAGTGCCACGTTGAGTCTCCGCGACGGGCTGGCTGATTaGAGATGCTTCATCCACAAT +
Preference number: 5 (lower is better)
Translates to: PSRISLCLALVSATLSLRDGLAD*RCFIHN
Trigger: ATTGTGGATGAAGCATCTCAAATCAGCCAGCCCGTC...GCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTGATCCTGCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp CAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTTCCGCTCCAGCCTCTaGAACAAGCTCTCGCTCATG +
Preference number: 5 (lower is better)
Translates to: QFKGGIHRKPQLEHLVAQFRSSL*NKLSLM
Trigger: CATGAGCGAGAGCTTGTTCAAGAGGCTGGAGCGGAA...CTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AACTGCTCTGCATTCAGATGGTCAAAGAGCGTCCCCAGAGGCGGGAAGCGCTTCACCACCATTTTCAACTaGCTCTGGAGCTGGGACCTT +
Preference number: 5 (lower is better)
Translates to: NCSAFRWSKSVPRGGKRFTTIFN*LWSWDL
Trigger: AAGGTCCCAGCTCCAGAGCAAGTTGAAAATGGTGGT...GAAGCGCTTCCCGCCTCTGGGGACGCTCTTTGACCATCTGAATGCAGAGCAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp GCTCTGCATTCAGATGGTCAAAGAGCGTCCCCAGAGGCGGGAAGCGCTTCAGCGCTGGCTTCTGTGACATaGCTAACACCACCATTTTCA +
Preference number: 5 (lower is better)
Translates to: ALHSDGQRASPEAGSASALASVT*LTPPFS
Trigger: TGAAAATGGTGGTGTTAGCAATGTCACAGAAGCCAG...CGCTGAAGCGCTTCCCGCCTCTGGGGACGCTCTTTGACCATCTGAATGCAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp CTCGTGGCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCAATCCGACTTTAAACTaGGCTAACTTCAGGAGAATA +
Preference number: 5 (lower is better)
Translates to: LVAQSLPMPRQSPQCLSLNPTLN*ANFRRI
Trigger: TATTCTCCTGAAGTTAGCCAAGTTTAAAGTCGGATT...GAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGCCACGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp GCGCAGTCTCTGCCTATGCCGCGGCAGTCTCCGCAGTGTCTCAGTCTCGCTGACTTTTTCGGGAAAATATaGGGTGATTTATTCCCATGC +
Preference number: 5 (lower is better)
Translates to: AQSLPMPRQSPQCLSLADFFGKI*GDLFPC
Trigger: GCATGGGAATAAATCACCCAATATTTTCCCGAAAAA...GTCAGCGAGACTGAGACACTGCGGAGACTGCCGCGGCATAGGCAGAGACTGCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp AACTGCTCTGCATTCAGATGGTCAAAGAGCGTCCCCAGAGGCGGGAAGCGCTTCGCGTATGTGAGCTTGTaGCTCAGGGACATAATCTTC +
Preference number: 5 (lower is better)
Translates to: NCSAFRWSKSVPRGGKRFAYVSL*LRDIIF
Trigger: GAAGATTATGTCCCTGAGCAACAAGCTCACATACGC...GAAGCGCTTCCCGCCTCTGGGGACGCTCTTTGACCATCTGAATGCAGAGCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp GCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCAGGAAACACACGGGATaGTCTGGCTCTAACACTCCA +
Preference number: 5 (lower is better)
Translates to: AFTENLSWSISWRSLCLCRKHTG*SGSNTP
Trigger: TGGAGTGTTAGAGCCAGACAATCCCGTGTGTTTCCT...GCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 90 bp TCATCGTCTATTATCCACGGCTCAGATGTGCAGTCTCCCTCTAAGTaGACGATGTCCCCTGGCTCAACTGGTACTGAGCTCCAGCCATTC +
Preference number: 5 (lower is better)
Translates to: SSSIIHGSDVQSPSK*TMSPGSTGTELQPF
Trigger: GAATGGCTGGAGCTCAGTACCAGTTGAGCCAGGGGACATCGTTCACTTAGAGGGAGACTGCACATCTGAGCCGTGGATAATAGACGATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 90 bp ATGAGACACCACAGGCTGAAATACTTCAAGTGCGCCAGCTGCAGGTaGCGTGTTTCTTCCTGGATTTTGGACAGCATGGCTTCTGGGATG +
Preference number: 5 (lower is better)
Translates to: MRHHRLKYFKCASCR*RVSSWILDSMASGM
Trigger: CATCCCAGAAGCCATGCTGTCCAAAATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCACTTGAAGTATTTCAGCCTGTGGTGTCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 90 bp GACTCCAGCGTTAACATGAGACACCACAGGCTGAAATACTTCAAGTaGGCCAGCTGCAGGTGCCGTGTTTCTTCCTGGATTTTGGACAGC +
Preference number: 5 (lower is better)
Translates to: DSSVNMRHHRLKYFK*ASCRCRVSSWILDS
Trigger: GCTGTCCAAAATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCACTTGAAGTATTTCAGCCTGTGGTGTCTCATGTTAACGCTGGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 90 bp TATCTGCGAACAGTATTTACAAGTTTTCTCTTCCTCGATTATCTGTaGCAAGGCAGAGAGCCGAGCTTCCTCCCCCGGAGCTGCTCGGCT +
Preference number: 5 (lower is better)
Translates to: YLRTVFTSFLFLDYL*QGREPSFLPRSCSA
Trigger: AGCCGAGCAGCTCCGGGGGAGGAAGCTCGGCTCTCTGCCTTGCCACAGATAATCGAGGAAGAGAAAACTTGTAAATACTGTTCGCAGATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AGGATTAACTGCTCTGCATTCAGATGGTCAAAGAGCGTCCCCAGAGGCGGGAAGGTTTCTTCCTGGATTTaGGACAGCATGGCTTCTGGG +
Preference number: 5 (lower is better)
Translates to: RINCSAFRWSKSVPRGGKVSSWI*DSMASG
Trigger: CCCAGAAGCCATGCTGTCCAAAATCCAGGAAGAAAC...CTTCCCGCCTCTGGGGACGCTCTTTGACCATCTGAATGCAGAGCAGTTAATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp GTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTAGAAGGACTCTCTTCATaGCTTGTCTCTGGGGTTTAT +
Preference number: 5 (lower is better)
Translates to: VAFTENLSWSISWRSLCLEGLSS*LVSGVY
Trigger: ATAAACCCCAGAGACAAGCAATGAAGAGAGTCCTTC...TAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp CATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCTGCCTATGCCGAAGGACTCTCTTCATaGCTTGTCTCTGGGGTTTAT +
Preference number: 5 (lower is better)
Translates to: HSQKTSAGASRGAVSAYAEGLSS*LVSGVY
Trigger: ATAAACCCCAGAGACAAGCAATGAAGAGAGTCCTTC...GGCATAGGCAGAGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp CAGTTTATGCTTGGCTCTGGTGAGTGCCACGTTGAGTCTCCGCCAATCTTTCAGCCTGCGTATGTGAGCTaGTTGCTCAGGGACATAATC +
Preference number: 5 (lower is better)
Translates to: QFMLGSGECHVESPPIFQPAYVS*LLRDII
Trigger: GATTATGTCCCTGAGCAACAAGCTCACATACGCAGG...CTGAAAGATTGGCGGAGACTCAACGTGGCACTCACCAGAGCCAAGCATAAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp TTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTCCTGCGTATGTGAGCTaGTTGCTCAGGGACATAATC +
Preference number: 5 (lower is better)
Translates to: FKGGIHRKPQLEHLVAQSPAYVS*LLRDII
Trigger: GATTATGTCCCTGAGCAACAAGCTCACATACGCAGG...AGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 90 bp GGGCACAGATGGTGGTTGTCTTTCCTGTCCCTGGCATCCCAACAATaGGCGTGTAGTCTTTCGAAAGAAGGACTCTCTTCATTGCTTGTC +
Preference number: 5 (lower is better)
Translates to: GHRWWLSFLSLASQQ*ACSLSKEGLSSLLV
Trigger: GACAAGCAATGAAGAGAGTCCTTCTTTCGAAAGACTACACGCTCATTGTTGGGATGCCAGGGACAGGAAAGACAACCACCATCTGTGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 90 bp CTCCGCGAAAAGAACAGTGGGCCCAGGCAGACGGGCTGGCTGATTTaGGATGCTTCATCCACAATACAGAAATCAAAGGTTTTTCGGGAA +
Preference number: 5 (lower is better)
Translates to: LREKNSGPRQTGWLI*DASSTIQKSKVFRE
Trigger: TTCCCGAAAAACCTTTGATTTCTGTATTGTGGATGAAGCATCTCAAATCAGCCAGCCCGTCTGCCTGGGCCCACTGTTCTTTTCGCGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 90 bp CCGTGTTTCTTCCTGGATTTTGGACAGCATGGCTTCTGGGATGGATaGGTCATCTCCCTGCTCTTCAACTGCTCTGCTATAAAGAGCACA +
Preference number: 5 (lower is better)
Translates to: PCFFLDFGQHGFWDG*VISLLFNCSAIKST
Trigger: TGTGCTCTTTATAGCAGAGCAGTTGAAGAGCAGGGAGATGACGCATCCATCCCAGAAGCCATGCTGTCCAAAATCCAGGAAGAAACACGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 90 bp GTTAACATGAGACACCACAGGCTGAAATACTTCAAGTGCGCCAGCTaGAGGTGCCGTGTTTCTTCCTGGATTTTGGACAGCATGGCTTCT +
Preference number: 5 (lower is better)
Translates to: VNMRHHRLKYFKCAS*RCRVSSWILDSMAS
Trigger: AGAAGCCATGCTGTCCAAAATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCACTTGAAGTATTTCAGCCTGTGGTGTCTCATGTTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp TTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGTCTACCAGGATGAGACTCTaGTCCCTTCCTTGGTATTTG +
Preference number: 5 (lower is better)
Translates to: FKGGIHRKPQLEHLVAQSTRMRL*SLPWYL
Trigger: CAAATACCAAGGAAGGGACAAGAGTCTCATCCTGGT...AGACTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS TCA 90 bp CAAACCTCCGCGAAAAGAACAGTGGGCCCAGGCAGACGGGCTGGCTaGTTTGAGATGCTTCATCCACAATACAGAAATCAAAGGTTTTTC +
Preference number: 5 (lower is better)
Translates to: QTSAKRTVGPGRRAG*FEMLHPQYRNQRFF
Trigger: GAAAAACCTTTGATTTCTGTATTGTGGATGAAGCATCTCAAATCAGCCAGCCCGTCTGCCTGGGCCCACTGTTCTTTTCGCGGAGGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 90 bp CAGCATGGCTTCTGGGATGGATGCGTCATCTCCCTGCTCTTCAACTaGTCTGCTATAAAGAGCACAGTTGCCTATCTGCGAACAGTATTT +
Preference number: 5 (lower is better)
Translates to: QHGFWDGCVISLLFN*SAIKSTVAYLRTVF
Trigger: AAATACTGTTCGCAGATAGGCAACTGTGCTCTTTATAGCAGAGCAGTTGAAGAGCAGGGAGATGACGCATCCATCCCAGAAGCCATGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp CAGTTTAAGGGTGGCATTCACAGAAAACCTCAGCTGGAGCATCTCGTGGCGCAGACTCTTGTCCCTTCCTaGGTATTTGTCTACTGTGTT +
Preference number: 5 (lower is better)
Translates to: QFKGGIHRKPQLEHLVAQTLVPS*VFVYCV
Trigger: AACACAGTAGACAAATACCAAGGAAGGGACAAGAGT...CTGCGCCACGAGATGCTCCAGCTGAGGTTTTCTGTGAATGCCACCCTTAAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS GCA 90 bp TGGCTTCTGGGATGGATGCGTCATCTCCCTGCTCTTCAACTGCTCTaGTATAAAGAGCACAGTTGCCTATCTGCGAACAGTATTTACAAG +
Preference number: 5 (lower is better)
Translates to: WLLGWMRHLPALQLL*YKEHSCLSANSIYK
Trigger: CTTGTAAATACTGTTCGCAGATAGGCAACTGTGCTCTTTATAGCAGAGCAGTTGAAGAGCAGGGAGATGACGCATCCATCCCAGAAGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 90 bp GGACCTCGATCTGCAAATCTCCTCCTCTGTAAACTTCTGGATGTCTaGATGGACCTTATGAGACTGACCCAAGCGCAAAAATCCGACTTT +
Preference number: 5 (lower is better)
Translates to: GPRSANLLLCKLLDV*MDLMRLTQAQKSDF
Trigger: AAAGTCGGATTTTTGCGCTTGGGTCAGTCTCATAAGGTCCATCCAGACATCCAGAAGTTTACAGAGGAGGAGATTTGCAGATCGAGGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp GTTCCATCCTCATTACTCCTAACAAAGGACACCAGGATGAGACTCTTGTCCCTTCAGAGAGAGCTGCATTaGAGGGAATTCAGACGAAGG +
Preference number: 5 (lower is better)
Translates to: VPSSLLLTKDTRMRLLSLQRELH*REFRRR
Trigger: CCTTCGTCTGAATTCCCTCAAATGCAGCTCTCTCTG...AAGGGACAAGAGTCTCATCCTGGTGTCCTTTGTTAGGAGTAATGAGGATGGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp TCTTTCAGGAGCTCGCCGAGAGTTCCATCCTCATTACTCCTAACAAAGGACACCAATTCTCGAAGTCTTTaGCTGGGATCTGTGCTTTCC +
Preference number: 5 (lower is better)
Translates to: SFRSSPRVPSSLLLTKDTNSRSL*LGSVLS
Trigger: GGAAAGCACAGATCCCAGCAAAAGACTTCGAGAATT...GGTGTCCTTTGTTAGGAGTAATGAGGATGGAACTCTCGGCGAGCTCCTGAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS-3UTR CAA 90 bp GCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCAGACCCGTTCCGCTCCAGCCTCTaGAACAAGCTCTCGCTCATG +
Preference number: 5 (lower is better)
Translates to: ASLSDCLNVTCMIWESDPFRSSL*NKLSLM
Trigger: CATGAGCGAGAGCTTGTTCAAGAGGCTGGAGCGGAA...CGGGTCTGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp GTTCCATCCTCATTACTCCTAACAAAGGACACCAGGATGAGACTCTTGTCCCTTAGGAAACACACGGGATaGTCTGGCTCTAACACTCCA +
Preference number: 5 (lower is better)
Translates to: VPSSLLLTKDTRMRLLSLRKHTG*SGSNTP
Trigger: TGGAGTGTTAGAGCCAGACAATCCCGTGTGTTTCCT...AAGGGACAAGAGTCTCATCCTGGTGTCCTTTGTTAGGAGTAATGAGGATGGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092462.12
CDS TCA 90 bp TTCAAGCGATACATTTCCTTCAAATGCCTCACTTCTCGGAGGGTCTaGAGAGCAAGCTCTTGTAGCCTTTCTGGAGCAAAGCTCTCACTT +
Preference number: 5 (lower is better)
Translates to: FKRYISFKCLTSRRV*RASSCSLSGAKLSL
Trigger: AAGTGAGAGCTTTGCTCCAGAAAGGCTACAAGAGCTTGCTCTTCAGACCCTCCGAGAAGTGAGGCATTTGAAGGAAATGTATCGCTTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTACAGAGAGAGCTGCATTaGAGGGAATTCAGACGAAGG +
Preference number: 5 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLQRELH*REFRRR
Trigger: CCTTCGTCTGAATTCCCTCAAATGCAGCTCTCTCTG...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCGTTTCTTCCTGGATTTaGGACAGCATGGCTTCTGGG +
Preference number: 5 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGVSSWI*DSMASG
Trigger: CCCAGAAGCCATGCTGTCCAAAATCCAGGAAGAAAC...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp GCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCAGACCCGAGGTTTCCAACACAGTaGCCACTCTCCTCCAGTTCA +
Preference number: 5 (lower is better)
Translates to: ASLSDCLNVTCMIWESDPRFPTQ*PLSSSS
Trigger: TGAACTGGAGGAGAGTGGCAACTGTGTTGGAAACCT...CGGGTCTGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp CAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCTAAGGTTTCCAACACAGTaGCCACTCTCCTCCAGTTCA +
Preference number: 5 (lower is better)
Translates to: QKRKIWDLENSTFTSFGLRFPTQ*PLSSSS
Trigger: TGAACTGGAGGAGAGTGGCAACTGTGTTGGAAACCT...TAGCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp CCCGAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCAAACCCTTTAGAATGTaGGCCACCGTATCCTTCGCA +
Preference number: 5 (lower is better)
Translates to: PEVGSFFCELSALSYNGTKPFRM*ATVSFA
Trigger: TGCGAAGGATACGGTGGCCAACATTCTAAAGGGTTT...GGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTCGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCGACGGGCTGGCTGATTaGAGATGCTTCATCCACAAT +
Preference number: 5 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGDGLAD*RCFIHN
Trigger: ATTGTGGATGAAGCATCTCAAATCAGCCAGCCCGTC...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 90 bp TCACCTGCCATCAGATTGGTGGCTGGCATGGGACCATTTTTCCGCTaGAAATTATGTAAATACTGTCCATCACAAACTCTTGATACAGGC +
Preference number: 5 (lower is better)
Translates to: SPAIRLVAGMGPFFR*KLCKYCPSQTLDTG
Trigger: GCCTGTATCAAGAGTTTGTGATGGACAGTATTTACATAATTTTCAGCGGAAAAATGGTCCCATGCCAGCCACCAATCTGATGGCAGGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AGATGGGCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCATCATGCCCAGAGCTCTaGCCTCTCGGTTTACAACCA +
Preference number: 5 (lower is better)
Translates to: RWASLSDCLNVTCMIWESSCPEL*PLGLQP
Trigger: TGGTTGTAAACCGAGAGGCAAGAGCTCTGGGCATGA...TGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGCCCATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AGTACAGACCCCAAGGCTAACCCACAACTTAAAGTGGAAAATCTTATGGTTTTTTCATGCCCAGAGCTCTaGCCTCTCGGTTTACAACCA +
Preference number: 5 (lower is better)
Translates to: STDPKANPQLKVENLMVFSCPEL*PLGLQP
Trigger: TGGTTGTAAACCGAGAGGCAAGAGCTCTGGGCATGA...AAAAACCATAAGATTTTCCACTTTAAGTTGTGGGTTAGCCTTGGGGTCTGTACT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 90 bp CGTCATCTCCCTGCTCTTCAACTGCTCTGCTATAAAGAGCACAGTTaGCTATCTGCGAACAGTATTTACAAGTTTTCTCTTCCTCGATTA +
Preference number: 5 (lower is better)
Translates to: RHLPALQLLCYKEHS*LSANSIYKFSLPRL
Trigger: TAATCGAGGAAGAGAAAACTTGTAAATACTGTTCGCAGATAGGCAACTGTGCTCTTTATAGCAGAGCAGTTGAAGAGCAGGGAGATGACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AGATGGGCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCAACCACCATTTTCAACTaGCTCTGGAGCTGGGACCTT +
Preference number: 5 (lower is better)
Translates to: RWASLSDCLNVTCMIWESTTIFN*LWSWDL
Trigger: AAGGTCCCAGCTCCAGAGCAAGTTGAAAATGGTGGT...TGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGCCCATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCCTGGCTTCTGTGACATaGCTAACACCACCATTTTCA +
Preference number: 5 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGLASVT*LTPPFS
Trigger: TGAAAATGGTGGTGTTAGCAATGTCACAGAAGCCAG...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp GAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCTTAGCGTATGTGAGCTTGTaGCTCAGGGACATAATCTTC +
Preference number: 5 (lower is better)
Translates to: EVGSFFCELSALSYNGTLAYVSL*LRDIIF
Trigger: GAAGATTATGTCCCTGAGCAACAAGCTCACATACGC...TAAGGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 90 bp GAGAAAGAAGGGAGATACTCCTCAACTTCACAGAGTATTTCATCTTaGCTCAGATTCAAGCGATACATTTCCTTCAAATGCCTCACTTCT +
Preference number: 5 (lower is better)
Translates to: EKEGRYSSTSQSISS*LRFKRYISFKCLTS
Trigger: AGAAGTGAGGCATTTGAAGGAAATGTATCGCTTGAATCTGAGCCAAGATGAAATACTCTGTGAAGTTGAGGAGTATCTCCCTTCTTTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp GAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCTTAACTGTGACGTCTATTTaGCCCTTCAGTCCAAACCTA +
Preference number: 5 (lower is better)
Translates to: EVGSFFCELSALSYNGTLTVTSI*PFSPNL
Trigger: TAGGTTTGGACTGAAGGGCAAAATAGACGTCACAGT...TAAGGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AGTACAGACCCCAAGGCTAACCCACAACTTAAAGTGGAAAATCTTATGGTTTTTAATTCTCGAAGTCTTTaGCTGGGATCTGTGCTTTCC +
Preference number: 5 (lower is better)
Translates to: STDPKANPQLKVENLMVFNSRSL*LGSVLS
Trigger: GGAAAGCACAGATCCCAGCAAAAGACTTCGAGAATT...AAAAACCATAAGATTTTCCACTTTAAGTTGTGGGTTAGCCTTGGGGTCTGTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp CCCGAAGTTGGTAGTTTCTTTTGTGAACTCTCAGCCTTGAGCTATAATGGAACCTTTTTCGGGAAAATATaGGGTGATTTATTCCCATGC +
Preference number: 5 (lower is better)
Translates to: PEVGSFFCELSALSYNGTFFGKI*GDLFPC
Trigger: GCATGGGAATAAATCACCCAATATTTTCCCGAAAAA...GGTTCCATTATAGCTCAAGGCTGAGAGTTCACAAAAGAAACTACCAACTTCGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AACAGAAGAGAAAAATCTGGGACCTTGAAAACAGTACATTCACCTCCTTTGGGCAATCCGACTTTAAACTaGGCTAACTTCAGGAGAATA +
Preference number: 5 (lower is better)
Translates to: NRREKSGTLKTVHSPPLGNPTLN*ANFRRI
Trigger: TATTCTCCTGAAGTTAGCCAAGTTTAAAGTCGGATT...GCCCAAAGGAGGTGAATGTACTGTTTTCAAGGTCCCAGATTTTTCTCTTCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS-3UTR CAA 90 bp AGATGGGCCAGTCTGTCTGACTGTTTAAATGTAACTTGTATGATTTGGGAATCATCCCTTCCTTGGTATTaGTCTACTGTGTTAACCTCA +
Preference number: 5 (lower is better)
Translates to: RWASLSDCLNVTCMIWESSLPWY*STVLTS
Trigger: TGAGGTTAACACAGTAGACAAATACCAAGGAAGGGA...TGATTCCCAAATCATACAAGTTACATTTAAACAGTCAGACAGACTGGCCCATCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131422.8
CDS CCA 90 bp TGCTTCATCCACAATACAGAAATCAAAGGTTTTTCGGGAAAATATTaGGTGATTTATTCCCATGCAGGTTGTTGCAACAATAGGGTGACT +
Preference number: 5 (lower is better)
Translates to: CFIHNTEIKGFSGKY*VIYSHAGCCNNRVT
Trigger: AGTCACCCTATTGTTGCAACAACCTGCATGGGAATAAATCACCCAATATTTTCCCGAAAAACCTTTGATTTCTGTATTGTGGATGAAGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp CGAGCTTCCTCCCCCGGAGCTGCTCGGCTCACACGGTaGAGCAGCGAGGCGGCCAGCCAGTTCCTGAGCTTC +
Preference number: 6 (lower is better)
Translates to: RASSPGAARLTR*SSEAASQFLSF
Trigger: GAAGCTCAGGAACTGGCTGGCCGCCTCGCTGCTGCACCGTGTGAGCCGAGCAGCTCCGGGGGAGGAAGCTCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp GATGGTTGGCGGGCACAGGGTACATCTGCCCGGTCTTaGGGTAGAGAAGCCAGCCAGCCTCGGGGTCCTCTC +
Preference number: 6 (lower is better)
Translates to: DGWRAQGTSARS*GREASQPRGPL
Trigger: GAGAGGACCCCGAGGCTGGCTGGCTTCTCTACCTCAAGACCGGGCAGATGTACCCTGTGCCCGCCAACCATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp CAACGGCGGAGTGCGTGTAGCTGGTCAGCAGAACGCTaGACCCACAGGCAGAGAGGATCCTCACCAGGGCAC +
Preference number: 6 (lower is better)
Translates to: QRRSACSWSAER*THRQRGSSPGH
Trigger: GTGCCCTGGTGAGGATCCTCTCTGCCTGTGGGTTCAGCGTTCTGCTGACCAGCTACACGCACTCCGCCGTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 90 bp AGGCTCAGCCTTGCGTCCTTGAGGTTGGGCAGGGCTAGCACTGCGTaGGCCACTCGGTCTGACCCACACTCCAGTTTCCCTGCGTATGTG +
Preference number: 6 (lower is better)
Translates to: RLSLASLRLGRASTA*ATRSDPHSSFPAYV
Trigger: CACATACGCAGGGAAACTGGAGTGTGGGTCAGACCGAGTGGCCAACGCAGTGCTAGCCCTGCCCAACCTCAAGGACGCAAGGCTGAGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp GCTGCACCACAGCGCTCTCGTTCCGCTCCAGCCTCTTaGACAAGCTCTCGCTCATGCCCAGAGCTCTTGCCT +
Preference number: 6 (lower is better)
Translates to: AAPQRSRSAPAS*TSSRSCPELLP
Trigger: AGGCAAGAGCTCTGGGCATGAGCGAGAGCTTGTTCAAGAGGCTGGAGCGGAACGAGAGCGCTGTGGTGCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp AGTCGGCATAAAGCTGGAGGCTCAGCCTTGCGTCCTTaGGGTTGGGCAGGGCTAGCACTGCGTTGGCCACTC +
Preference number: 6 (lower is better)
Translates to: SRHKAGGSALRP*GWAGLALRWPL
Trigger: GAGTGGCCAACGCAGTGCTAGCCCTGCCCAACCTCAAGGACGCAAGGCTGAGCCTCCAGCTTTATGCCGACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 72 bp TTCCTCAGGATGCACAGAACTTCGTGCTCTCGGTCCTaGGACGCCGTGACGTGCAAGCGCTTCTCCTCGGCT +
Preference number: 6 (lower is better)
Translates to: FLRMHRTSCSRS*DAVTCKRFSSA
Trigger: AGCCGAGGAGAAGCGCTTGCACGTCACGGCGTCCCAGGACCGAGAGCACGAAGTTCTGTGCATCCTGAGGAA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp AGCTGCACCACAGCGCTCTCGTTCCGCTCCAGCCTCTaGAACAAGCTCTCGCTCATGCCCAGAGCTCTTGCC +
Preference number: 6 (lower is better)
Translates to: SCTTALSFRSSL*NKLSLMPRALA
Trigger: GGCAAGAGCTCTGGGCATGAGCGAGAGCTTGTTCAAGAGGCTGGAGCGGAACGAGAGCGCTGTGGTGCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 90 bp AGCAGCGAGGCGGCCAGCCAGTTCCTGAGCTTCAGCAGTTCTCTTTaGTCCAGATGGTTGGCGGGCACAGGGTACATCTGCCCGGTCTTG +
Preference number: 6 (lower is better)
Translates to: SSEAASQFLSFSSSL*SRWLAGTGYICPVL
Trigger: CAAGACCGGGCAGATGTACCCTGTGCCCGCCAACCATCTGGACAAAAGAGAACTGCTGAAGCTCAGGAACTGGCTGGCCGCCTCGCTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 90 bp TGCACGGTCAGCTGCACCACAGCGCTCTCGTTCCGCTCCAGCCTCTaGAACAAGCTCTCGCTCATGCCCAGAGCTCTTGCCTCTCGGTTT +
Preference number: 6 (lower is better)
Translates to: CTVSCTTALSFRSSL*NKLSLMPRALASRF
Trigger: AAACCGAGAGGCAAGAGCTCTGGGCATGAGCGAGAGCTTGTTCAAGAGGCTGGAGCGGAACGAGAGCGCTGTGGTGCAGCTGACCGTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp AGAACTTCGTGCTCTCGGTCCTGGGACGCCGTGACGTaGAAGCGCTTCTCCTCGGCTCCTCTTTCATTCTGC +
Preference number: 6 (lower is better)
Translates to: RTSCSRSWDAVT*KRFSSAPLSFC
Trigger: GCAGAATGAAAGAGGAGCCGAGGAGAAGCGCTTGCACGTCACGGCGTCCCAGGACCGAGAGCACGAAGTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp TCACACGGTGCAGCAGCGAGGCGGCCAGCCAGTTCCTaGGCTTCAGCAGTTCTCTTTTGTCCAGATGGTTGG +
Preference number: 6 (lower is better)
Translates to: SHGAAARRPASS*ASAVLFCPDGW
Trigger: CCAACCATCTGGACAAAAGAGAACTGCTGAAGCTCAGGAACTGGCTGGCCGCCTCGCTGCTGCACCGTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp CCTCTTGAACAAGCTCTCGCTCATGCCCAGAGCTCTTaGCTCTCGGTTTACAACCAGGGGAGGCAGCTGCTG +
Preference number: 6 (lower is better)
Translates to: PLEQALAHAQSS*LSVYNQGRQLL
Trigger: CAGCAGCTGCCTCCCCTGGTTGTAAACCGAGAGGCAAGAGCTCTGGGCATGAGCGAGAGCTTGTTCAAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp GCGGCCAGCCAGTTCCTGAGCTTCAGCAGTTCTCTTTaGTCCAGATGGTTGGCGGGCACAGGGTACATCTGC +
Preference number: 6 (lower is better)
Translates to: AASQFLSFSSSL*SRWLAGTGYIC
Trigger: GCAGATGTACCCTGTGCCCGCCAACCATCTGGACAAAAGAGAACTGCTGAAGCTCAGGAACTGGCTGGCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp GCTGGGACCTTGTCTGTGTTAAGGAAACACACGGGATaGTCTGGCTCTAACACTCCAGCCAGCCAGGGGCTG +
Preference number: 6 (lower is better)
Translates to: AGTLSVLRKHTG*SGSNTPASQGL
Trigger: CAGCCCCTGGCTGGCTGGAGTGTTAGAGCCAGACAATCCCGTGTGTTTCCTTAACACAGACAAGGTCCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp ACGTGCAAGCGCTTCTCCTCGGCTCCTCTTTCATTCTaGGAGGTCTCAACAGCTAGCACCAGGTACCGGTTA +
Preference number: 6 (lower is better)
Translates to: TCKRFSSAPLSF*EVSTASTRYRL
Trigger: TAACCGGTACCTGGTGCTAGCTGTTGAGACCTCGCAGAATGAAAGAGGAGCCGAGGAGAAGCGCTTGCACGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 72 bp CAGTTCCTGAGCTTCAGCAGTTCTCTTTTGTCCAGATaGTTGGCGGGCACAGGGTACATCTGCCCGGTCTTG +
Preference number: 6 (lower is better)
Translates to: QFLSFSSSLLSR*LAGTGYICPVL
Trigger: CAAGACCGGGCAGATGTACCCTGTGCCCGCCAACCATCTGGACAAAAGAGAACTGCTGAAGCTCAGGAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 72 bp TTCAAGTGCGCCAGCTGCAGGTGCCGTGTTTCTTCCTaGATTTTGGACAGCATGGCTTCTGGGATGGATGCG +
Preference number: 6 (lower is better)
Translates to: FKCASCRCRVSS*ILDSMASGMDA
Trigger: CGCATCCATCCCAGAAGCCATGCTGTCCAAAATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCACTTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp TTCCTGAGCTTCAGCAGTTCTCTTTTGTCCAGATGGTaGGCGGGCACAGGGTACATCTGCCCGGTCTTGAGG +
Preference number: 6 (lower is better)
Translates to: FLSFSSSLLSRW*AGTGYICPVLR
Trigger: CCTCAAGACCGGGCAGATGTACCCTGTGCCCGCCAACCATCTGGACAAAAGAGAACTGCTGAAGCTCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp TGCGCCAGCTGCAGGTGCCGTGTTTCTTCCTGGATTTaGGACAGCATGGCTTCTGGGATGGATGCGTCATCT +
Preference number: 6 (lower is better)
Translates to: CASCRCRVSSWI*DSMASGMDASS
Trigger: AGATGACGCATCCATCCCAGAAGCCATGCTGTCCAAAATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 90 bp TGTGAGCTTGTTGCTCAGGGACATAATCTTCCTGTTCATTCGGTATaGCACGGTCAGCTGCACCACAGCGCTCTCGTTCCGCTCCAGCCT +
Preference number: 6 (lower is better)
Translates to: CELVAQGHNLPVHSV*HGQLHHSALVPLQP
Trigger: AGGCTGGAGCGGAACGAGAGCGCTGTGGTGCAGCTGACCGTGCAATACCGAATGAACAGGAAGATTATGTCCCTGAGCAACAAGCTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp ATAATCTTCCTGTTCATTCGGTATTGCACGGTCAGCTaGACCACAGCGCTCTCGTTCCGCTCCAGCCTCTTG +
Preference number: 6 (lower is better)
Translates to: IIFLFIRYCTVS*TTALSFRSSLL
Trigger: CAAGAGGCTGGAGCGGAACGAGAGCGCTGTGGTGCAGCTGACCGTGCAATACCGAATGAACAGGAAGATTAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp TTGCTCAGGGACATAATCTTCCTGTTCATTCGGTATTaGACGGTCAGCTGCACCACAGCGCTCTCGTTCCGC +
Preference number: 6 (lower is better)
Translates to: LLRDIIFLFIRY*TVSCTTALSFR
Trigger: GCGGAACGAGAGCGCTGTGGTGCAGCTGACCGTGCAATACCGAATGAACAGGAAGATTATGTCCCTGAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 72 bp GCAGGTGCCGTGTTTCTTCCTGGATTTTGGACAGCATaGCTTCTGGGATGGATGCGTCATCTCCCTGCTCTT +
Preference number: 6 (lower is better)
Translates to: AGAVFLPGFWTA*LLGWMRHLPAL
Trigger: AAGAGCAGGGAGATGACGCATCCATCCCAGAAGCCATGCTGTCCAAAATCCAGGAAGAAACACGGCACCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp GTTGCTCAGGGACATAATCTTCCTGTTCATTCGGTATaGCACGGTCAGCTGCACCACAGCGCTCTCGTTCCG +
Preference number: 6 (lower is better)
Translates to: VAQGHNLPVHSV*HGQLHHSALVP
Trigger: CGGAACGAGAGCGCTGTGGTGCAGCTGACCGTGCAATACCGAATGAACAGGAAGATTATGTCCCTGAGCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp ATTATCCACGGCTCAGATGTGCAGTCTCCCTCTAAGTaGACGATGTCCCCTGGCTCAACTGGTACTGAGCTC +
Preference number: 6 (lower is better)
Translates to: IIHGSDVQSPSK*TMSPGSTGTEL
Trigger: GAGCTCAGTACCAGTTGAGCCAGGGGACATCGTTCACTTAGAGGGAGACTGCACATCTGAGCCGTGGATAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp CTGTTACTGCCATCGCTTGGCAGAGAGAGCTGCATTTaGGGGAATTCAGACGAAGGGCCCTTACGCATGAAG +
Preference number: 6 (lower is better)
Translates to: LLLPSLGRESCI*GNSDEGPLRMK
Trigger: CTTCATGCGTAAGGGCCCTTCGTCTGAATTCCCTCAAATGCAGCTCTCTCTGCCAAGCGATGGCAGTAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp CACAGGCTGAAATACTTCAAGTGCGCCAGCTGCAGGTaGCGTGTTTCTTCCTGGATTTTGGACAGCATGGCT +
Preference number: 6 (lower is better)
Translates to: HRLKYFKCASCR*RVSSWILDSMA
Trigger: AGCCATGCTGTCCAAAATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCACTTGAAGTATTTCAGCCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp AGACACCACAGGCTGAAATACTTCAAGTGCGCCAGCTaGAGGTGCCGTGTTTCTTCCTGGATTTTGGACAGC +
Preference number: 6 (lower is better)
Translates to: RHHRLKYFKCAS*RCRVSSWILDS
Trigger: GCTGTCCAAAATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCACTTGAAGTATTTCAGCCTGTGGTGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 72 bp CCGTGTTTCTTCCTGGATTTTGGACAGCATGGCTTCTaGGATGGATGCGTCATCTCCCTGCTCTTCAACTGC +
Preference number: 6 (lower is better)
Translates to: PCFFLDFGQHGF*DGCVISLLFNC
Trigger: GCAGTTGAAGAGCAGGGAGATGACGCATCCATCCCAGAAGCCATGCTGTCCAAAATCCAGGAAGAAACACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 90 bp CAAACTCTTGATACAGGCTCCGTCCTGACCAGGTTTCCAACACAGTaGCCACTCTCCTCCAGTTCAGAGGCAGGCGTTAACCAGATACTC +
Preference number: 6 (lower is better)
Translates to: QTLDTGSVLTRFPTQ*PLSSSSEAGVNQIL
Trigger: GAGTATCTGGTTAACGCCTGCCTCTGAACTGGAGGAGAGTGGCAACTGTGTTGGAAACCTGGTCAGGACGGAGCCTGTATCAAGAGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 90 bp GCCACTCGGTCTGACCCACACTCCAGTTTCCCTGCGTATGTGAGCTaGTTGCTCAGGGACATAATCTTCCTGTTCATTCGGTATTGCACG +
Preference number: 6 (lower is better)
Translates to: ATRSDPHSSFPAYVS*LLRDIIFLFIRYCT
Trigger: CGTGCAATACCGAATGAACAGGAAGATTATGTCCCTGAGCAACAAGCTCACATACGCAGGGAAACTGGAGTGTGGGTCAGACCGAGTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 90 bp CCTCCGCGAAAAGAACAGTGGGCCCAGGCAGACGGGCTGGCTGATTaGAGATGCTTCATCCACAATACAGAAATCAAAGGTTTTTCGGGA +
Preference number: 6 (lower is better)
Translates to: PPRKEQWAQADGLAD*RCFIHNTEIKGFSG
Trigger: TCCCGAAAAACCTTTGATTTCTGTATTGTGGATGAAGCATCTCAAATCAGCCAGCCCGTCTGCCTGGGCCCACTGTTCTTTTCGCGGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 90 bp ACTCGGTCTGACCCACACTCCAGTTTCCCTGCGTATGTGAGCTTGTaGCTCAGGGACATAATCTTCCTGTTCATTCGGTATTGCACGGTC +
Preference number: 6 (lower is better)
Translates to: TRSDPHSSFPAYVSL*LRDIIFLFIRYCTV
Trigger: GACCGTGCAATACCGAATGAACAGGAAGATTATGTCCCTGAGCAACAAGCTCACATACGCAGGGAAACTGGAGTGTGGGTCAGACCGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp TCTGTTACTGCCATCGCTTGGCAGAGAGAGCTGCATTaGAGGGAATTCAGACGAAGGGCCCTTACGCATGAA +
Preference number: 6 (lower is better)
Translates to: SVTAIAWQRELH*REFRRRALTHE
Trigger: TTCATGCGTAAGGGCCCTTCGTCTGAATTCCCTCAAATGCAGCTCTCTCTGCCAAGCGATGGCAGTAACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp GCGAAAAGAACAGTGGGCCCAGGCAGACGGGCTGGCTaGTTTGAGATGCTTCATCCACAATACAGAAATCAA +
Preference number: 6 (lower is better)
Translates to: AKRTVGPGRRAG*FEMLHPQYRNQ
Trigger: TTGATTTCTGTATTGTGGATGAAGCATCTCAAATCAGCCAGCCCGTCTGCCTGGGCCCACTGTTCTTTTCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp GGATGGATGCGTCATCTCCCTGCTCTTCAACTGCTCTaGTATAAAGAGCACAGTTGCCTATCTGCGAACAGT +
Preference number: 6 (lower is better)
Translates to: GWMRHLPALQLL*YKEHSCLSANS
Trigger: ACTGTTCGCAGATAGGCAACTGTGCTCTTTATAGCAGAGCAGTTGAAGAGCAGGGAGATGACGCATCCATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp TTCTGGGATGGATGCGTCATCTCCCTGCTCTTCAACTaGTCTGCTATAAAGAGCACAGTTGCCTATCTGCGA +
Preference number: 6 (lower is better)
Translates to: FWDGCVISLLFN*SAIKSTVAYLR
Trigger: TCGCAGATAGGCAACTGTGCTCTTTATAGCAGAGCAGTTGAAGAGCAGGGAGATGACGCATCCATCCCAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp TTCCTGGATTTTGGACAGCATGGCTTCTGGGATGGATaGGTCATCTCCCTGCTCTTCAACTGCTCTGCTATA +
Preference number: 6 (lower is better)
Translates to: FLDFGQHGFWDG*VISLLFNCSAI
Trigger: TATAGCAGAGCAGTTGAAGAGCAGGGAGATGACGCATCCATCCCAGAAGCCATGCTGTCCAAAATCCAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp GTTAACATGAGACACCACAGGCTGAAATACTTCAAGTaGGCCAGCTGCAGGTGCCGTGTTTCTTCCTGGATT +
Preference number: 6 (lower is better)
Translates to: VNMRHHRLKYFK*ASCRCRVSSWI
Trigger: AATCCAGGAAGAAACACGGCACCTGCAGCTGGCGCACTTGAAGTATTTCAGCCTGTGGTGTCTCATGTTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 72 bp CTTGTCTCTGGGGTTTATTCAAACCCTTTAGAATGTTaGCCACCGTATCCTTCGCATCGTGTGGAAGGACGG +
Preference number: 6 (lower is better)
Translates to: LVSGVYSNPLEC*PPYPSHRVEGR
Trigger: CCGTCCTTCCACACGATGCGAAGGATACGGTGGCCAACATTCTAAAGGGTTTGAATAAACCCCAGAGACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp TCTGACCCACACTCCAGTTTCCCTGCGTATGTGAGCTaGTTGCTCAGGGACATAATCTTCCTGTTCATTCGG +
Preference number: 6 (lower is better)
Translates to: SDPHSSFPAYVS*LLRDIIFLFIR
Trigger: CCGAATGAACAGGAAGATTATGTCCCTGAGCAACAAGCTCACATACGCAGGGAAACTGGAGTGTGGGTCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp TGGTGGTTGTCTTTCCTGTCCCTGGCATCCCAACAATaGGCGTGTAGTCTTTCGAAAGAAGGACTCTCTTCA +
Preference number: 6 (lower is better)
Translates to: WWLSFLSLASQQ*ACSLSKEGLSS
Trigger: TGAAGAGAGTCCTTCTTTCGAAAGACTACACGCTCATTGTTGGGATGCCAGGGACAGGAAAGACAACCACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp AAGAACAGTGGGCCCAGGCAGACGGGCTGGCTGATTTaGGATGCTTCATCCACAATACAGAAATCAAAGGTT +
Preference number: 6 (lower is better)
Translates to: KNSGPRQTGWLI*DASSTIQKSKV
Trigger: AACCTTTGATTTCTGTATTGTGGATGAAGCATCTCAAATCAGCCAGCCCGTCTGCCTGGGCCCACTGTTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp TCTCACTTATCGCTTTCTGAAAGACTTCGTGGAGAATaGTACCGATCAGCATCTGGCGAGTGGCTGGATCAG +
Preference number: 6 (lower is better)
Translates to: SHLSLSERLRGE*YRSASGEWLDQ
Trigger: CTGATCCAGCCACTCGCCAGATGCTGATCGGTACAATTCTCCACGAAGTCTTTCAGAAAGCGATAAGTGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp AAAGAACAGTGGGCCCAGGCAGACGGGCTGGCTGATTaGAGATGCTTCATCCACAATACAGAAATCAAAGGT +
Preference number: 6 (lower is better)
Translates to: KEQWAQADGLAD*RCFIHNTEIKG
Trigger: ACCTTTGATTTCTGTATTGTGGATGAAGCATCTCAAATCAGCCAGCCCGTCTGCCTGGGCCCACTGTTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp GACCCACACTCCAGTTTCCCTGCGTATGTGAGCTTGTaGCTCAGGGACATAATCTTCCTGTTCATTCGGTAT +
Preference number: 6 (lower is better)
Translates to: DPHSSFPAYVSL*LRDIIFLFIRY
Trigger: ATACCGAATGAACAGGAAGATTATGTCCCTGAGCAACAAGCTCACATACGCAGGGAAACTGGAGTGTGGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp TACATTTCCTTCAAATGCCTCACTTCTCGGAGGGTCTaGAGAGCAAGCTCTTGTAGCCTTTCTGGAGCAAAG +
Preference number: 6 (lower is better)
Translates to: YISFKCLTSRRV*RASSCSLSGAK
Trigger: CTTTGCTCCAGAAAGGCTACAAGAGCTTGCTCTTCAGACCCTCCGAGAAGTGAGGCATTTGAAGGAAATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp CAATGTTACAAGGTGAACTTCTGTTACTGCCATCGCTaGGCAGAGAGAGCTGCATTTGAGGGAATTCAGACG +
Preference number: 6 (lower is better)
Translates to: QCYKVNFCYCHR*AERAAFEGIQT
Trigger: CGTCTGAATTCCCTCAAATGCAGCTCTCTCTGCCAAGCGATGGCAGTAACAGAAGTTCACCTTGTAACATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp GGCTTCTGTGACATTGCTAACACCACCATTTTCAACTaGCTCTGGAGCTGGGACCTTGTCTGTGTTAAGGAA +
Preference number: 6 (lower is better)
Translates to: GFCDIANTTIFN*LWSWDLVCVKE
Trigger: TTCCTTAACACAGACAAGGTCCCAGCTCCAGAGCAAGTTGAAAATGGTGGTGTTAGCAATGTCACAGAAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp GCTTCTGTGACATTGCTAACACCACCATTTTCAACTTaGTCTGGAGCTGGGACCTTGTCTGTGTTAAGGAAA +
Preference number: 6 (lower is better)
Translates to: ASVTLLTPPFST*SGAGTLSVLRK
Trigger: TTTCCTTAACACAGACAAGGTCCCAGCTCCAGAGCAAGTTGAAAATGGTGGTGTTAGCAATGTCACAGAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS GCA 72 bp CCTGCTCTTCAACTGCTCTGCTATAAAGAGCACAGTTaGCTATCTGCGAACAGTATTTACAAGTTTTCTCTT +
Preference number: 6 (lower is better)
Translates to: PALQLLCYKEHS*LSANSIYKFSL
Trigger: AAGAGAAAACTTGTAAATACTGTTCGCAGATAGGCAACTGTGCTCTTTATAGCAGAGCAGTTGAAGAGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CCA 72 bp GGGAGATACTCCTCAACTTCACAGAGTATTTCATCTTaGCTCAGATTCAAGCGATACATTTCCTTCAAATGC +
Preference number: 6 (lower is better)
Translates to: GRYSSTSQSISS*LRFKRYISFKC
Trigger: GCATTTGAAGGAAATGTATCGCTTGAATCTGAGCCAAGATGAAATACTCTGTGAAGTTGAGGAGTATCTCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS TCA 72 bp ATCAGATTGGTGGCTGGCATGGGACCATTTTTCCGCTaGAAATTATGTAAATACTGTCCATCACAAACTCTT +
Preference number: 6 (lower is better)
Translates to: IRLVAGMGPFFR*KLCKYCPSQTL
Trigger: AAGAGTTTGTGATGGACAGTATTTACATAATTTTCAGCGGAAAAATGGTCCCATGCCAGCCACCAATCTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8
CDS CAA 72 bp GGTTCCCTGAAATCGATGATTAATTCTCGAAGTCTTTaGCTGGGATCTGTGCTTTCCATCAATTTAGACAGA +
Preference number: 6 (lower is better)
Translates to: GSLKSMINSRSL*LGSVLSINLDR
Trigger: TCTGTCTAAATTGATGGAAAGCACAGATCCCAGCAAAAGACTTCGAGAATTAATCATCGATTTCAGGGAACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092462.12
ENSMUST00000131422.8