RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DMWD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030410

Ensembl transcript IDs: ENSMUST00000032570.14, ENSMUST00000108479.2

Found 193 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTaGGTGGAGGACAGGGCCAAGGCCACACAGGACACTACATCCCCA +
Preference number: 1 (lower is better)
Translates to: WLTLMFQRTGHCTWQ*VEDRAKATQDTTSP
Trigger: TGGGGATGTAGTGTCCTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR CCA 90 bp GGGATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTaGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGGACACTACA +
Preference number: 1 (lower is better)
Translates to: GIWLTLMFQRTGHCT*QWVEDRAKATQDTT
Trigger: TGTAGTGTCCTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR-3UTR CCA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGACAGCGGGGAGGGTTATaGCTAGGAGGCCGGGAACAT +
Preference number: 2 (lower is better)
Translates to: APALPSHPGVLWAKSLPGQRGGL*LGGREH
Trigger: ATGTTCCCGGCCTCCTAGCCATAACCCTCCCCGCTG...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR-3UTR CCA 90 bp AGGGCCAAGGCCACACAGGACACTACATCCCCATGGCTGGGCCAACCTAGGGGACAGCGGGGAGGGTTATaGCTAGGAGGCCGGGAACAT +
Preference number: 2 (lower is better)
Translates to: RAKATQDTTSPWLGQPRGQRGGL*LGGREH
Trigger: ATGTTCCCGGCCTCCTAGCCATAACCCTCCCCGCTG...TCCCCTAGGTTGGCCCAGCCATGGGGATGTAGTGTCCTGTGTGGCCTTGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR-3UTR CCA 90 bp CACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGTGAACAGTCACATGCTGCTACATCCCCATGGCTaGGCCAACCTAGGGGACCCC +
Preference number: 2 (lower is better)
Translates to: HPGVLWAKSLPGVNSHMLLHPHG*ANLGDP
Trigger: GGGGTCCCCTAGGTTGGCCCAGCCATGGGGATGTAG...CAGCATGTGACTGTTCACTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR-3UTR TCA 90 bp CCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGGCAGTCCTTCCATCATaGTTAGTCTTGTTAATACAG +
Preference number: 2 (lower is better)
Translates to: PLPCPLTQGYCGLSLSQEAVLPS*LVLLIQ
Trigger: CTGTATTAACAAGACTAATCATGATGGAAGGACTGC...CTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR-3UTR CCA 90 bp GAGGTCCAGGGGAACAAGGAGGGCCCTCAGGGCTTCCATAATTTAACACTTTCAGACCATAGCAAGGGGTaGAGTTTGGGCAGGAGTGGG +
Preference number: 2 (lower is better)
Translates to: EVQGNKEGPQGFHNLTLSDHSKG*SLGRSG
Trigger: CCCACTCCTGCCCAAACTCCACCCCTTGCTATGGTC...TGAAAGTGTTAAATTATGGAAGCCCTGAGGGCCCTCCTTGTTCCCCTGGACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR-3UTR TCA 90 bp CAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACAGTCTTGTTAATACAGTaGTTCTTGAGGTCAGCGGGG +
Preference number: 2 (lower is better)
Translates to: QRTGHCTWQWVEDRAKATVLLIQ*FLRSAG
Trigger: CCCCGCTGACCTCAAGAATCACTGTATTAACAAGAC...TGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR CAA 90 bp TGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGTCATaGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGGA +
Preference number: 2 (lower is better)
Translates to: WDRDMVNTDVSENRS*YLAVGGGQGQGHTG
Trigger: TCCTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR-3UTR CCA 90 bp GAACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACACTACATCCCCATGGCTaGGCCAACCTAGGGGACCCC +
Preference number: 2 (lower is better)
Translates to: EQSHAGTGIWLTLMFQRTLHPHG*ANLGDP
Trigger: GGGGTCCCCTAGGTTGGCCCAGCCATGGGGATGTAG...TGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR CAA 90 bp AGGGATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTaGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGGACACTAC +
Preference number: 2 (lower is better)
Translates to: RDMVNTDVSENRSLY*AVGGGQGQGHTGHY
Trigger: GTAGTGTCCTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR-3UTR TCA 90 bp CACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGTGAACAGTCACATGCTGGCAGTCCTTCCATCATaGTTAGTCTTGTTAATACAG +
Preference number: 2 (lower is better)
Translates to: HPGVLWAKSLPGVNSHMLAVLPS*LVLLIQ
Trigger: CTGTATTAACAAGACTAATCATGATGGAAGGACTGC...CAGCATGTGACTGTTCACTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR-3UTR TCA 90 bp AACACTTTCAAAATCACAGACCATAGCAAGGGGTGGAGTTTGGGCAGGAGTGGGGTCTTGTTAATACAGTaGTTCTTGAGGTCAGCGGGG +
Preference number: 2 (lower is better)
Translates to: NTFKITDHSKGWSLGRSGVLLIQ*FLRSAG
Trigger: CCCCGCTGACCTCAAGAATCACTGTATTAACAAGAC...CCCACTCCTGCCCAAACTCCACCCCTTGCTATGGTCTGTGATTTTGAAAGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR-3UTR CAA 90 bp CCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGAACAGGTCATTGTACTaGGCAGTGGGTGGAGGACAG +
Preference number: 3 (lower is better)
Translates to: PLPCPLTQGYCGLSLSQENRSLY*AVGGGQ
Trigger: CTGTCCTCCACCCACTGCCAAGTACAATGACCTGTT...CTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR CCA 72 bp TGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTaGAGGACAGGGCCAAGGCCACACAGGACACTACAT +
Preference number: 3 (lower is better)
Translates to: CFREQVIVLGSG*RTGPRPHRTLH
Trigger: ATGTAGTGTCCTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGACTAGGCGCACCAGGCTaGGGCGGACGGCGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: APALPSHPGVLWAKSLPGLGAPG*GGRRAA
Trigger: CGCTGCCCGCCGTCCGCCTCAGCCTGGTGCGCCTAG...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGGCCCAGCACCTTAGCTaGGTCCAATCGGCTTCGGGG +
Preference number: 4 (lower is better)
Translates to: PLPCPLTQGYCGLSLSQEAQHLS*VQSASG
Trigger: CCCCGAAGCCGATTGGACCCAGCTAAGGTGCTGGGC...CTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAACTGGGGGAGCTGCCTaGTTGGGAGGAGATGCCCTC +
Preference number: 4 (lower is better)
Translates to: APALPSHPGVLWAKSLPGTGGAA*LGGDAL
Trigger: GAGGGCATCTCCTCCCAACCAGGCAGCTCCCCCAGT...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS-3UTR TCA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGATGCGAAACTGCGACTTaGTCTCCGCGCAGTCGCCCA +
Preference number: 4 (lower is better)
Translates to: APALPSHPGVLWAKSLPGCETAT*SPRSRP
Trigger: TGGGCGACTGCGCGGAGATCAAGTCGCAGTTTCGCA...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGTTGACCCAGGACTTGTaGCCATGGCCTCGAGCCACC +
Preference number: 4 (lower is better)
Translates to: PLPCPLTQGYCGLSLSQELTQDL*PWPRAT
Trigger: GGTGGCTCGAGGCCATGGCCACAAGTCCTGGGTCAA...CTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGGAGAGGCTCCAGCAGTaGCACCTCATGGATCCGAGG +
Preference number: 4 (lower is better)
Translates to: PLPCPLTQGYCGLSLSQEERLQQ*HLMDPR
Trigger: CCTCGGATCCATGAGGTGCCACTGCTGGAGCCTCTC...CTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGGGGGAGCTGCCTGGTTaGGAGGAGATGCCCTCTACA +
Preference number: 4 (lower is better)
Translates to: PLPCPLTQGYCGLSLSQEGELPG*EEMPST
Trigger: TGTAGAGGGCATCTCCTCCCAACCAGGCAGCTCCCC...CTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS-3UTR GCA 90 bp AGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGAGGAGATGCCCGCCTTaGCTGGCCGGGCCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: RTGHCTWQWVEDRAKATQRRCPP*LAGPRC
Trigger: GCACCTGGGCCCGGCCAGGCAAGGCGGGCATCTCCT...CTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGCGCAGGCAGCCATCCTaGCTGACACAGGCTAAGTGT +
Preference number: 4 (lower is better)
Translates to: PLPCPLTQGYCGLSLSQERRQPS*LTQAKC
Trigger: ACACTTAGCCTGTGTCAGCCAGGATGGCTGCCTGCG...CTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAAGAATGCAAACTCATTaGGGGGCCCCTCACCCACTG +
Preference number: 4 (lower is better)
Translates to: APALPSHPGVLWAKSLPGRMQTH*GAPHPL
Trigger: CAGTGGGTGAGGGGCCCCTCAATGAGTTTGCATTCT...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGACAAAGGCTACAGCGTTaGCCCAGGACTTGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: APALPSHPGVLWAKSLPGQRLQR*PRTCGH
Trigger: ATGGCCACAAGTCCTGGGTCAACGCTGTAGCCTTTG...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGGTGGCAGCTGTGAACTaGTTGAAGTCGTGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: PLPCPLTQGYCGLSLSQEVAAVN*LKSWQV
Trigger: CACCTGCCACGACTTCAACCAGTTCACAGCTGCCAC...CTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp AGGGCCAAGGCCACACAGGACACTACATCCCCATGGCTGGGCCAACCTAGGGGACAGACTATACTGGGGTaGGGTGGAGGTGCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: RAKATQDTTSPWLGQPRGQTILG*GGGAGV
Trigger: CACCCCTGCACCTCCACCCCACCCCAGTATAGTCTG...TCCCCTAGGTTGGCCCAGCCATGGGGATGTAGTGTCCTGTGTGGCCTTGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGATTCAGCAGACTATACTaGGGTGGGGTGGAGGTGCAG +
Preference number: 4 (lower is better)
Translates to: APALPSHPGVLWAKSLPGFSRLY*GGVEVQ
Trigger: CTGCACCTCCACCCCACCCCAGTATAGTCTGCTGAA...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GGGACCCCCAGTATGTGTGCAGCGTGGGGCTTGGAGCAGTCCTTCCATCATGATGGGGAGCTGCCTGGTTaGGAGGAGATGCCCGCCTTG +
Preference number: 4 (lower is better)
Translates to: GTPSMCAAWGLEQSFHHDGELPG*EEMPAL
Trigger: CAAGGCGGGCATCTCCTCCCAACCAGGCAGCTCCCC...ATCATGATGGAAGGACTGCTCCAAGCCCCACGCTGCACACATACTGGGGGTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAAGAGCACATCTTCTGTaGGGTCCCACAGGCAGAACT +
Preference number: 4 (lower is better)
Translates to: APALPSHPGVLWAKSLPGRAHLL*GPTGRT
Trigger: AGTTCTGCCTGTGGGACCTCACAGAAGATGTGCTCT...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAACTTGGCTAGTGGATTaGGGGGTGCCTTGCTTTTGG +
Preference number: 4 (lower is better)
Translates to: APALPSHPGVLWAKSLPGTWLVD*GVPCFW
Trigger: CCAAAAGCAAGGCACCCCGCAATCCACTAGCCAAGT...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp AGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGACTGGGGGAGCTGCCTaGTTGGGAGGAGATGCCCGC +
Preference number: 4 (lower is better)
Translates to: RTGHCTWQWVEDRAKATQTGGAA*LGGDAR
Trigger: GCGGGCATCTCCTCCCAACCAGGCAGCTCCCCCAGT...CTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GGGACCCCCAGTATGTGTGCAGCGTGGGGCTTGGAGCAGTCCTTCCATCATGATGGTGTGGGAGACTGTTaGAACGAGACAGGGAGCGGG +
Preference number: 4 (lower is better)
Translates to: GTPSMCAAWGLEQSFHHDGVGDC*NETGSG
Trigger: CCCGCTCCCTGTCTCGTTCCAACAGTCTCCCACACC...ATCATGATGGAAGGACTGCTCCAAGCCCCACGCTGCACACATACTGGGGGTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGTGAACAGTCACATGCTGGCCCAGCACCTTAGCTaGGTCCAATCGGCTTCGGGG +
Preference number: 4 (lower is better)
Translates to: HPGVLWAKSLPGVNSHMLAQHLS*VQSASG
Trigger: CCCCGAAGCCGATTGGACCCAGCTAAGGTGCTGGGC...CAGCATGTGACTGTTCACTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp AGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGCTTGCTTGCCCTGCCTaGGCCTCGGTCTCCTCGTCT +
Preference number: 4 (lower is better)
Translates to: RTGHCTWQWVEDRAKATQLACPA*ASVSSS
Trigger: AGACGAGGAGACCGAGGCCCAGGCAGGGCAAGCAAG...CTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS-3UTR TCA 90 bp AGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGTGGGGCTCCTGTGTCTaGGCTGGTGACTTCAGGCTC +
Preference number: 4 (lower is better)
Translates to: RTGHCTWQWVEDRAKATQWGSCV*AGDFRL
Trigger: GAGCCTGAAGTCACCAGCTCAGACACAGGAGCCCCA...CTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp CACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGTGAACAGTCACATGCTGAGCCAAAGCGGTACGTaGTGGAGCCAGCCTTGGGCA +
Preference number: 4 (lower is better)
Translates to: HPGVLWAKSLPGVNSHMLSQSGT*WSQPWA
Trigger: TGCCCAAGGCTGGCTCCATCACGTACCGCTTTGGCT...CAGCATGTGACTGTTCACTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp AGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGTCGCGGGTGCGAAACTaGGACTTGATCTCCGCGCAG +
Preference number: 4 (lower is better)
Translates to: RTGHCTWQWVEDRAKATQSRVRN*DLISAQ
Trigger: CTGCGCGGAGATCAAGTCGCAGTTTCGCACCCGCGA...CTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp AGGGCCAAGGCCACACAGGACACTACATCCCCATGGCTGGGCCAACCTAGGGGAGGGGTGCCTTGCTTTTaGCTGCATAGACAGCAAAGC +
Preference number: 4 (lower is better)
Translates to: RAKATQDTTSPWLGQPRGGVPCF*LHRQQS
Trigger: GCTTTGCTGTCTATGCAGCCAAAAGCAAGGCACCCC...TCCCCTAGGTTGGCCCAGCCATGGGGATGTAGTGTCCTGTGTGGCCTTGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GGGACCCCCAGTATGTGTGCAGCGTGGGGCTTGGAGCAGTCCTTCCATCATGATCTTGCCACCACCAGCTaGGTGTGGGAGACTGTTGGA +
Preference number: 4 (lower is better)
Translates to: GTPSMCAAWGLEQSFHHDLATTS*VWETVG
Trigger: TCCAACAGTCTCCCACACCCAGCTGGTGGTGGCAAG...ATCATGATGGAAGGACTGCTCCAAGCCCCACGCTGCACACATACTGGGGGTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp AGTGAACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGACTAGGCGCACCAGGCTaGGGCGGACGGCGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: SEQSHAGTGIWLTLMFQRLGAPG*GGRRAA
Trigger: CGCTGCCCGCCGTCCGCCTCAGCCTGGTGCGCCTAG...TCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGTTCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp AGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGCAGAACTGTGTGTCCTaGCCAGCTGAGCCAAAGCGG +
Preference number: 4 (lower is better)
Translates to: RTGHCTWQWVEDRAKATQQNCVS*PAEPKR
Trigger: CCGCTTTGGCTCAGCTGGCCAGGACACACAGTTCTG...CTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGAACTGTGTGTCCTaGCCAGCTGAGCCAAAGCGG +
Preference number: 4 (lower is better)
Translates to: QRTGHCTWQWVEDRAKATQNCVS*PAEPKR
Trigger: CCGCTTTGGCTCAGCTGGCCAGGACACACAGTTCTG...TGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp AGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGAGAATGCAAACTCATTaGGGGGCCCCTCACCCACTG +
Preference number: 4 (lower is better)
Translates to: RTGHCTWQWVEDRAKATQRMQTH*GAPHPL
Trigger: CAGTGGGTGAGGGGCCCCTCAATGAGTTTGCATTCT...CTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp CACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGTGAACAGTCACATGCTGCAAAGCGGCCAATGCTaGATGGTATGCCAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: HPGVLWAKSLPGVNSHMLQSGQC*MVCQAP
Trigger: TGGAGCCTGGCATACCATTCAGCATTGGCCGCTTTG...CAGCATGTGACTGTTCACTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp AGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGACGGTCAGGCGTTCCTaGGCAATCTTCTTGCACACG +
Preference number: 4 (lower is better)
Translates to: RTGHCTWQWVEDRAKATQTVRRS*AIFLHT
Trigger: CGTGTGCAAGAAGATTGCTCAGGAACGCCTGACCGT...CTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp AGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGGGTACAGGTGGCCACTaGCGTGAGAAGCAAGGAACA +
Preference number: 4 (lower is better)
Translates to: RTGHCTWQWVEDRAKATQGTGGH*REKQGT
Trigger: TGTTCCTTGCTTCTCACGCCAGTGGCCACCTGTACC...CTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp AGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACAGTTCAGCAGACTATACTaGGGTGGGGTGGAGGTGCAG +
Preference number: 4 (lower is better)
Translates to: RTGHCTWQWVEDRAKATQFSRLY*GGVEVQ
Trigger: CTGCACCTCCACCCCACCCCAGTATAGTCTGCTGAA...CTGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp CACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGTGAACAGTCACATGCTGAGAGCACATCTTCTGTaGGGTCCCACAGGCAGAACT +
Preference number: 4 (lower is better)
Translates to: HPGVLWAKSLPGVNSHMLRAHLL*GPTGRT
Trigger: AGTTCTGCCTGTGGGACCTCACAGAAGATGTGCTCT...CAGCATGTGACTGTTCACTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GAGGTCCAGGGGAACAAGGAGGGCCCTCAGGGCTTCCATAATTTAACACTTTCACAGACTATACTGGGGTaGGGTGGAGGTGCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: EVQGNKEGPQGFHNLTLSQTILG*GGGAGV
Trigger: CACCCCTGCACCTCCACCCCACCCCAGTATAGTCTG...TGAAAGTGTTAAATTATGGAAGCCCTGAGGGCCCTCCTTGTTCCCCTGGACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GAGGTCCAGGGGAACAAGGAGGGCCCTCAGGGCTTCCATAATTTAACACTTTCATTGACCCAGGACTTGTaGCCATGGCCTCGAGCCACC +
Preference number: 4 (lower is better)
Translates to: EVQGNKEGPQGFHNLTLSLTQDL*PWPRAT
Trigger: GGTGGCTCGAGGCCATGGCCACAAGTCCTGGGTCAA...TGAAAGTGTTAAATTATGGAAGCCCTGAGGGCCCTCCTTGTTCCCCTGGACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp TGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCAAAGGCTACAGCGTTaGCCCAGGACTTGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: CFREQVIVLGSGWRTGPRQRLQR*PRTCGH
Trigger: ATGGCCACAAGTCCTGGGTCAACGCTGTAGCCTTTG...CCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp TTAACACTTTCAAAATCACAGACCATAGCAAGGGGTGGAGTTTGGGCAGGAGTGCGGTCCCGCCGCTCCTaGAGGGTCAGTGTGGCAAAG +
Preference number: 4 (lower is better)
Translates to: LTLSKSQTIARGGVWAGVRSRRS*RVSVAK
Trigger: CTTTGCCACACTGACCCTGCAGGAGCGGCGGGACCG...CACTCCTGCCCAAACTCCACCCCTTGCTATGGTCTGTGATTTTGAAAGTGTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp AACACTTTCAAAATCACAGACCATAGCAAGGGGTGGAGTTTGGGCAGGAGTGGGCAGGACTTGTGGCCATaGCCTCGAGCCACCACACGA +
Preference number: 4 (lower is better)
Translates to: NTFKITDHSKGWSLGRSGQDLWP*PRATTR
Trigger: TCGTGTGGTGGCTCGAGGCCATGGCCACAAGTCCTG...CCCACTCCTGCCCAAACTCCACCCCTTGCTATGGTCTGTGATTTTGAAAGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp AACACTTTCAAAATCACAGACCATAGCAAGGGGTGGAGTTTGGGCAGGAGTGGGAGGTGGCCACTGGCGTaGGAAGCAAGGAACAGACTC +
Preference number: 4 (lower is better)
Translates to: NTFKITDHSKGWSLGRSGRWPLA*EARNRL
Trigger: GAGTCTGTTCCTTGCTTCTCACGCCAGTGGCCACCT...CCCACTCCTGCCCAAACTCCACCCCTTGCTATGGTCTGTGATTTTGAAAGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp TGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGCAAAGTAGCTCTTCATaGGCCCACGCAGAAGCATGC +
Preference number: 4 (lower is better)
Translates to: CFREQVIVLGSGWRTGPRQSSSS*AHAEAC
Trigger: GCATGCTTCTGCGTGGGCTCATGAAGAGCTACTTTG...CCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp ATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGTCCATCAGCACTGGCTaGCGCCGCCTCCTCTGCGCG +
Preference number: 4 (lower is better)
Translates to: IWLTLMFQRTGHCTWQWVSISTG*RRLLCA
Trigger: CGCGCAGAGGAGGCGGCGTCAGCCAGTGCTGATGGA...CACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp AACACTTTCAAAATCACAGACCATAGCAAGGGGTGGAGTTTGGGCAGGAGTGGGTGTGTCCTGGCCAGCTaGGCCAAAGCGGTACGTGAT +
Preference number: 4 (lower is better)
Translates to: NTFKITDHSKGWSLGRSGCVLAS*AKAVRD
Trigger: ATCACGTACCGCTTTGGCTCAGCTGGCCAGGACACA...CCCACTCCTGCCCAAACTCCACCCCTTGCTATGGTCTGTGATTTTGAAAGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp ATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGACGGTCCCGCCGCTCCTaGAGGGTCAGTGTGGCAAAG +
Preference number: 4 (lower is better)
Translates to: MVNTDVSENRSLYLAVGGRSRRS*RVSVAK
Trigger: CTTTGCCACACTGACCCTGCAGGAGCGGCGGGACCG...TCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp AACACTTTCAAAATCACAGACCATAGCAAGGGGTGGAGTTTGGGCAGGAGTGGGCGCAGGCAGCCATCCTaGCTGACACAGGCTAAGTGT +
Preference number: 4 (lower is better)
Translates to: NTFKITDHSKGWSLGRSGRRQPS*LTQAKC
Trigger: ACACTTAGCCTGTGTCAGCCAGGATGGCTGCCTGCG...CCCACTCCTGCCCAAACTCCACCCCTTGCTATGGTCTGTGATTTTGAAAGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GAGGTCCAGGGGAACAAGGAGGGCCCTCAGGGCTTCCATAATTTAACACTTTCACCTCCTCTTCACCACTaGGATCTCCATCAGCACTGG +
Preference number: 4 (lower is better)
Translates to: EVQGNKEGPQGFHNLTLSPPLHH*DLHQHW
Trigger: CCAGTGCTGATGGAGATCCCAGTGGTGAAGAGGAGG...TGAAAGTGTTAAATTATGGAAGCCCTGAGGGCCCTCCTTGTTCCCCTGGACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp ACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGACACCACAGTGCCACTaGGGGAGCTGCCTGGTTGGG +
Preference number: 4 (lower is better)
Translates to: TVTCWDRDMVNTDVSENRTPQCH*GSCLVG
Trigger: CCCAACCAGGCAGCTCCCCCAGTGGCACTGTGGTGT...CCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp TGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGTGCGAAACTGCGACTTaGTCTCCGCGCAGTCGCCCA +
Preference number: 4 (lower is better)
Translates to: WLTLMFQRTGHCTWQWVECETAT*SPRSRP
Trigger: TGGGCGACTGCGCGGAGATCAAGTCGCAGTTTCGCA...CTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp TGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGAAGGAACAGACTCTCTaGCTCAGGCAGCCACTTCAA +
Preference number: 4 (lower is better)
Translates to: CFREQVIVLGSGWRTGPRKEQTL*LRQPLQ
Trigger: TTGAAGTGGCTGCCTGAGTCAGAGAGTCTGTTCCTT...CCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp GCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGTCCATCAGCACTGGCTaGCGCCGCCTCCTCTGCGCG +
Preference number: 4 (lower is better)
Translates to: AWSSPSIMISLVNTVILESISTG*RRLLCA
Trigger: CGCGCAGAGGAGGCGGCGTCAGCCAGTGCTGATGGA...CTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp TGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGTGCCTTGCTTTTGGCTaGATAGACAGCAAAGCCCTC +
Preference number: 4 (lower is better)
Translates to: CFREQVIVLGSGWRTGPRCLAFG*IDSKAL
Trigger: GAGGGCTTTGCTGTCTATGCAGCCAAAAGCAAGGCA...CCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp GAGGTCCAGGGGAACAAGGAGGGCCCTCAGGGCTTCCATAATTTAACACTTTCAACTTGGCTAGTGGATTaGGGGGTGCCTTGCTTTTGG +
Preference number: 4 (lower is better)
Translates to: EVQGNKEGPQGFHNLTLSTWLVD*GVPCFW
Trigger: CCAAAAGCAAGGCACCCCGCAATCCACTAGCCAAGT...TGAAAGTGTTAAATTATGGAAGCCCTGAGGGCCCTCCTTGTTCCCCTGGACCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp ACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGCAGGACTTGTGGCCATaGCCTCGAGCCACCACACGA +
Preference number: 4 (lower is better)
Translates to: TVTCWDRDMVNTDVSENRQDLWP*PRATTR
Trigger: TCGTGTGGTGGCTCGAGGCCATGGCCACAAGTCCTG...CCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GAACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACACAGAAGCTGGTGGGGTaGCACCAGGTGTGCCCGGAA +
Preference number: 4 (lower is better)
Translates to: EQSHAGTGIWLTLMFQRTQKLVG*HQVCPE
Trigger: TTCCGGGCACACCTGGTGCCACCCCACCAGCTTCTG...TGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp ATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGACAGAAGCTGGTGGGGTaGCACCAGGTGTGCCCGGAA +
Preference number: 4 (lower is better)
Translates to: MVNTDVSENRSLYLAVGGQKLVG*HQVCPE
Trigger: TTCCGGGCACACCTGGTGCCACCCCACCAGCTTCTG...TCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp ACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGGGTGTGGGAGACTGTTaGAACGAGACAGGGAGCGGG +
Preference number: 4 (lower is better)
Translates to: TVTCWDRDMVNTDVSENRGVGDC*NETGSG
Trigger: CCCGCTCCCTGTCTCGTTCCAACAGTCTCCCACACC...CCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GAACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACATGTGAACGCCTTGCCTaGCCGGGCCCAGGTGCAGAT +
Preference number: 4 (lower is better)
Translates to: EQSHAGTGIWLTLMFQRTCERLA*PGPGAD
Trigger: ATCTGCACCTGGGCCCGGCCAGGCAAGGCGTTCACA...TGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS-3UTR TCA 90 bp ATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGATGGGGCTCCTGTGTCTaGGCTGGTGACTTCAGGCTC +
Preference number: 4 (lower is better)
Translates to: MVNTDVSENRSLYLAVGGWGSCV*AGDFRL
Trigger: GAGCCTGAAGTCACCAGCTCAGACACAGGAGCCCCA...TCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp AGTGAACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGACGGGCCAGAGACGGATaGGGGGAGAGCACATCTTCT +
Preference number: 4 (lower is better)
Translates to: SEQSHAGTGIWLTLMFQRRARDG*GESTSS
Trigger: AGAAGATGTGCTCTCCCCTCATCCGTCTCTGGCCCG...TCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGTTCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp CGTGGGGCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTTCGCGGGTGCGAAACTaGGACTTGATCTCCGCGCAG +
Preference number: 4 (lower is better)
Translates to: RGAWSSPSIMISLVNTVISRVRN*DLISAQ
Trigger: CTGCGCGGAGATCAAGTCGCAGTTTCGCACCCGCGA...AATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGCCCCACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp AGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCAGCGGGCCAACTTGCTTGCCCTaGCTGGGCCTCGGTCTCCTC +
Preference number: 4 (lower is better)
Translates to: SPSIMISLVNTVILEVSGPTCLP*LGLGLL
Trigger: GAGGAGACCGAGGCCCAGGCAGGGCAAGCAAGTTGG...CCCGCTGACCTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS-3UTR CCA 90 bp CATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTAACTGGTTGAAGTCGTaGCAGGTGGGCTGGGTCCCC +
Preference number: 4 (lower is better)
Translates to: HAGTGIWLTLMFQRTGHCNWLKS*QVGWVP
Trigger: GGGGACCCAGCCCACCTGCCACGACTTCAACCAGTT...ACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp ATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAAACTGGTTGAAGTCGTaGCAGGTGGGCTGGGTCCCC +
Preference number: 4 (lower is better)
Translates to: MVNTDVSENRSLYLAVGGNWLKS*QVGWVP
Trigger: GGGGACCCAGCCCACCTGCCACGACTTCAACCAGTT...TCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTCACCCACTGCCCACTTaGCTAGTGGATTGCGGGGTG +
Preference number: 4 (lower is better)
Translates to: HAGTGIWLTLMFQRTGHCHPLPT*LVDCGV
Trigger: CACCCCGCAATCCACTAGCCAAGTGGGCAGTGGGTG...ACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CGTGGGGCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTACTACCAGAAGCTGGTaGGGTGGCACCAGGTGTGCC +
Preference number: 4 (lower is better)
Translates to: RGAWSSPSIMISLVNTVITTRSW*GGTRCA
Trigger: GGCACACCTGGTGCCACCCCACCAGCTTCTGGTAGT...AATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGCCCCACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CGTGGGGCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTGAGAGGCTCCAGCAGTaGCACCTCATGGATCCGAGG +
Preference number: 4 (lower is better)
Translates to: RGAWSSPSIMISLVNTVIERLQQ*HLMDPR
Trigger: CCTCGGATCCATGAGGTGCCACTGCTGGAGCCTCTC...AATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGCCCCACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
3UTR CAA 72 bp GTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTaGGCAGTGGGTGGAGGACAGGGCCAAGGCCACACA +
Preference number: 4 (lower is better)
Translates to: VNTDVSENRSLY*AVGGGQGQGHT
Trigger: TGTGTGGCCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp GAACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAAGGTGGCCACTGGCGTaGGAAGCAAGGAACAGACTC +
Preference number: 4 (lower is better)
Translates to: EQSHAGTGIWLTLMFQRTRWPLA*EARNRL
Trigger: GAGTCTGTTCCTTGCTTCTCACGCCAGTGGCCACCT...TGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp ATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGAGCCAAAGCGGTACGTaGTGGAGCCAGCCTTGGGCA +
Preference number: 4 (lower is better)
Translates to: IWLTLMFQRTGHCTWQWVSQSGT*WSQPWA
Trigger: TGCCCAAGGCTGGCTCCATCACGTACCGCTTTGGCT...CACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp GATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTCGGGCCAGAGACGGATaGGGGGAGAGCACATCTTCT +
Preference number: 4 (lower is better)
Translates to: DMVNTDVSENRSLYLAVGRARDG*GESTSS
Trigger: AGAAGATGTGCTCTCCCCTCATCCGTCTCTGGCCCG...ACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp TGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGAGAACTACCAGAAGCTaGTGGGGTGGCACCAGGTGT +
Preference number: 4 (lower is better)
Translates to: WLTLMFQRTGHCTWQWVERTTRS*WGGTRC
Trigger: ACACCTGGTGCCACCCCACCAGCTTCTGGTAGTTCT...CTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp TTAACACTTTCAAAATCACAGACCATAGCAAGGGGTGGAGTTTGGGCAGGAGTGACCACCAGCTGGGTGTaGGAGACTGTTGGAACGAGA +
Preference number: 4 (lower is better)
Translates to: LTLSKSQTIARGGVWAGVTTSWV*ETVGTR
Trigger: TCTCGTTCCAACAGTCTCCCACACCCAGCTGGTGGT...CACTCCTGCCCAAACTCCACCCCTTGCTATGGTCTGTGATTTTGAAAGTGTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp ACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGGCGGCCAATGCTGAATaGTATGCCAGGCTCCATCGA +
Preference number: 4 (lower is better)
Translates to: TVTCWDRDMVNTDVSENRAANAE*YARLHR
Trigger: TCGATGGAGCCTGGCATACCATTCAGCATTGGCCGC...CCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp AACACTTTCAAAATCACAGACCATAGCAAGGGGTGGAGTTTGGGCAGGAGTGGGCAGATGAGGCCCTCTTaGCAGGCAGTGATGATACAA +
Preference number: 4 (lower is better)
Translates to: NTFKITDHSKGWSLGRSGQMRPS*QAVMIQ
Trigger: TTGTATCATCACTGCCTGCCAAGAGGGCCTCATCTG...CCCACTCCTGCCCAAACTCCACCCCTTGCTATGGTCTGTGATTTTGAAAGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp TGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCACACCACAGTGCCACTaGGGGAGCTGCCTGGTTGGG +
Preference number: 4 (lower is better)
Translates to: WSSPSIMISLVNTVILEVTPQCH*GSCLVG
Trigger: CCCAACCAGGCAGCTCCCCCAGTGGCACTGTGGTGT...GACCTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp ATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCAGCGGGGAGGGTTATCACCCACTGCCCACTTaGCTAGTGGATTGCGGGGTG +
Preference number: 4 (lower is better)
Translates to: IMISLVNTVILEVSGEGYHPLPT*LVDCGV
Trigger: CACCCCGCAATCCACTAGCCAAGTGGGCAGTGGGTG...ATAACCCTCCCCGCTGACCTCAAGAATCACTGTATTAACAAGACTAATCATGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp ACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGAGCATGCTGTCAAAGTaGAAGACACGCAGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: TVTCWDRDMVNTDVSENRSMLSK*KTRRQP
Trigger: TGGCTGCCTGCGTGTCTTCCACTTTGACAGCATGCT...CCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CGTGGGGCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCCTCCTCTTCACCACTaGGATCTCCATCAGCACTGG +
Preference number: 4 (lower is better)
Translates to: RGAWSSPSIMISLVNTVIPPLHH*DLHQHW
Trigger: CCAGTGCTGATGGAGATCCCAGTGGTGAAGAGGAGG...AATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGCCCCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp TGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCACTACCAGAAGCTGGTaGGGTGGCACCAGGTGTGCC +
Preference number: 4 (lower is better)
Translates to: WSSPSIMISLVNTVILEVTTRSW*GGTRCA
Trigger: GGCACACCTGGTGCCACCCCACCAGCTTCTGGTAGT...GACCTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp ATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGCGGCCAATGCTGAATaGTATGCCAGGCTCCATCGA +
Preference number: 4 (lower is better)
Translates to: MVNTDVSENRSLYLAVGGAANAE*YARLHR
Trigger: TCGATGGAGCCTGGCATACCATTCAGCATTGGCCGC...TCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp GCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGTGTGTCCTGGCCAGCTaGGCCAAAGCGGTACGTGAT +
Preference number: 4 (lower is better)
Translates to: AWSSPSIMISLVNTVILECVLAS*AKAVRD
Trigger: ATCACGTACCGCTTTGGCTCAGCTGGCCAGGACACA...CTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp GATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTCAAAGCGGCCAATGCTaGATGGTATGCCAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: DMVNTDVSENRSLYLAVGQSGQC*MVCQAP
Trigger: TGGAGCCTGGCATACCATTCAGCATTGGCCGCTTTG...ACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp AGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCAGCGGGACGGTCAGGCGTTCCTaGGCAATCTTCTTGCACACG +
Preference number: 4 (lower is better)
Translates to: SPSIMISLVNTVILEVSGTVRRS*AIFLHT
Trigger: CGTGTGCAAGAAGATTGCTCAGGAACGCCTGACCGT...CCCGCTGACCTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp TTAACACTTTCAAAATCACAGACCATAGCAAGGGGTGGAGTTTGGGCAGGAGTGTGCCTTGCTTTTGGCTaGATAGACAGCAAAGCCCTC +
Preference number: 4 (lower is better)
Translates to: LTLSKSQTIARGGVWAGVCLAFG*IDSKAL
Trigger: GAGGGCTTTGCTGTCTATGCAGCCAAAAGCAAGGCA...CACTCCTGCCCAAACTCCACCCCTTGCTATGGTCTGTGATTTTGAAAGTGTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp ATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGATTGCGGGGTGCCTTaGTTTTGGCTGCATAGACAG +
Preference number: 4 (lower is better)
Translates to: MVNTDVSENRSLYLAVGGDCGVP*FWLHRQ
Trigger: CTGTCTATGCAGCCAAAAGCAAGGCACCCCGCAATC...TCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTGGGGTGCCTTGCTTTTaGCTGCATAGACAGCAAAGC +
Preference number: 4 (lower is better)
Translates to: HAGTGIWLTLMFQRTGHCGVPCF*LHRQQS
Trigger: GCTTTGCTGTCTATGCAGCCAAAAGCAAGGCACCCC...ACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp CATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTAGCATGCTGTCAAAGTaGAAGACACGCAGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: HAGTGIWLTLMFQRTGHCSMLSK*KTRRQP
Trigger: TGGCTGCCTGCGTGTCTTCCACTTTGACAGCATGCT...ACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGCTTGCCACCACCAGCTaGGTGTGGGAGACTGTTGGA +
Preference number: 4 (lower is better)
Translates to: AWSSPSIMISLVNTVILELATTS*VWETVG
Trigger: TCCAACAGTCTCCCACACCCAGCTGGTGGTGGCAAG...CTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp TGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCACTTGCTGGGTGACCTaGGCCAACTTGCTTGCCCTG +
Preference number: 4 (lower is better)
Translates to: WSSPSIMISLVNTVILEVTCWVT*ANLLAL
Trigger: CAGGGCAAGCAAGTTGGCCCAGGTCACCCAGCAAGT...GACCTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS-3UTR TCA 90 bp GATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTCAAAGTAGCTCTTCATaGGCCCACGCAGAAGCATGC +
Preference number: 4 (lower is better)
Translates to: DMVNTDVSENRSLYLAVGQSSSS*AHAEAC
Trigger: GCATGCTTCTGCGTGGGCTCATGAAGAGCTACTTTG...ACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR GCA 90 bp TGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCCCTCTACAACTGACTTaGTGGGTGACCTGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: WSSPSIMISLVNTVILEVPLQLT*WVTWAN
Trigger: GTTGGCCCAGGTCACCCAGCAAGTCAGTTGTAGAGG...GACCTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS-3UTR CCA 90 bp GCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTGGCAGCTGTGAACTaGTTGAAGTCGTGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: AWSSPSIMISLVNTVILEVAAVN*LKSWQV
Trigger: CACCTGCCACGACTTCAACCAGTTCACAGCTGCCAC...CTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp GCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGAGAACTACCAGAAGCTaGTGGGGTGGCACCAGGTGT +
Preference number: 4 (lower is better)
Translates to: AWSSPSIMISLVNTVILERTTRS*WGGTRC
Trigger: ACACCTGGTGCCACCCCACCAGCTTCTGGTAGTTCT...CTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp TGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCACCACCAGCTGGGTGTaGGAGACTGTTGGAACGAGA +
Preference number: 4 (lower is better)
Translates to: WSSPSIMISLVNTVILEVTTSWV*ETVGTR
Trigger: TCTCGTTCCAACAGTCTCCCACACCCAGCTGGTGGT...GACCTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp ATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCAGCGGGGAGGGTTATAAGGAACAGACTCTCTaGCTCAGGCAGCCACTTCAA +
Preference number: 4 (lower is better)
Translates to: IMISLVNTVILEVSGEGYKEQTL*LRQPLQ
Trigger: TTGAAGTGGCTGCCTGAGTCAGAGAGTCTGTTCCTT...ATAACCCTCCCCGCTGACCTCAAGAATCACTGTATTAACAAGACTAATCATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CCA 90 bp ATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCAGCGGGGAGGGTTATCAGATGAGGCCCTCTTaGCAGGCAGTGATGATACAA +
Preference number: 4 (lower is better)
Translates to: IMISLVNTVILEVSGEGYQMRPS*QAVMIQ
Trigger: TTGTATCATCACTGCCTGCCAAGAGGGCCTCATCTG...ATAACCCTCCCCGCTGACCTCAAGAATCACTGTATTAACAAGACTAATCATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR TCA 90 bp TGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCTCAGCCGCTCTTCATTaGATAGCTTGCTGGTGTCTT +
Preference number: 4 (lower is better)
Translates to: WSSPSIMISLVNTVILEVSAALH*IACWCL
Trigger: AAGACACCAGCAAGCTATTCAATGAAGAGCGGCTGA...GACCTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 90 bp CGGGGAGCAGCTTGTAGAAGCCCTCGCGGGTGCGAAACTGCGACTTaGTCTCCGCGCAGTCGCCCATGGCGGCGCTGGGGCCCGGGCCGC +
Preference number: 5 (lower is better)
Translates to: RGAACRSPRGCETAT*SPRSRPWRRWGPGR
Trigger: GCGGCCCGGGCCCCAGCGCCGCCATGGGCGACTGCGCGGAGATCAAGTCGCAGTTTCGCACCCGCGAGGGCTTCTACAAGCTGCTCCCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGAGGAGATGCCCGCCTaGCCTGGCCGGGCCCAGGTG +
Preference number: 5 (lower is better)
Translates to: APALPSHPGVLWAKSLPGEEMPA*PGRAQV
Trigger: CACCTGGGCCCGGCCAGGCAAGGCGGGCATCTCCTC...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108479.2
CDS CCA 90 bp CTGCACCTGTCTCTCCGGCCCGAGAACTACCAGAAGCTGGTGGGGTaGCACCAGGTGTGCCCGGAAGGGTGCGGGTACGGGCCAGAGACG +
Preference number: 5 (lower is better)
Translates to: LHLSLRPENYQKLVG*HQVCPEGCGYGPET
Trigger: CGTCTCTGGCCCGTACCCGCACCCTTCCGGGCACACCTGGTGCCACCCCACCAGCTTCTGGTAGTTCTCGGGCCGGAGAGACAGGTGCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 90 bp CATCGATGCACTAGGCCCACCAGCCTTGCCACCACCAGCTGGGTGTaGGAGACTGTTGGAACGAGACAGGGAGCGGGGCAGGGGGCCTGC +
Preference number: 5 (lower is better)
Translates to: HRCTRPTSLATTSWV*ETVGTRQGAGQGAC
Trigger: GCAGGCCCCCTGCCCCGCTCCCTGTCTCGTTCCAACAGTCTCCCACACCCAGCTGGTGGTGGCAAGGCTGGTGGGCCTAGTGCATCGATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 90 bp AGGTGGGCTGGGTCCCCTTGTAGATCCGCTTGTCGATGGGCTTGTTaGGATCGATGGACCGCTGGCTCCCGCTGCGGCAGCAGCCGGGGT +
Preference number: 5 (lower is better)
Translates to: RWAGSPCRSACRWAC*DRWTAGSRCGSSRG
Trigger: ACCCCGGCTGCTGCCGCAGCGGGAGCCAGCGGTCCATCGATCTCAACAAGCCCATCGACAAGCGGATCTACAAGGGGACCCAGCCCACCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 90 bp AGGCTCCATCGATGCACTAGGCCCACCAGCCTTGCCACCACCAGCTaGGTGTGGGAGACTGTTGGAACGAGACAGGGAGCGGGGCAGGGG +
Preference number: 5 (lower is better)
Translates to: RLHRCTRPTSLATTS*VWETVGTRQGAGQG
Trigger: CCCCTGCCCCGCTCCCTGTCTCGTTCCAACAGTCTCCCACACCCAGCTGGTGGTGGCAAGGCTGGTGGGCCTAGTGCATCGATGGAGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp AGGGCCAAGGCCACACAGGACACTACATCCCCATGGCTGGGCCAACCTAGGGGACCTGGGCCAACTTGCTaGCCCTGCCTGGGCCTCGGT +
Preference number: 5 (lower is better)
Translates to: RAKATQDTTSPWLGQPRGPGPTC*PCLGLG
Trigger: ACCGAGGCCCAGGCAGGGCAAGCAAGTTGGCCCAGG...TCCCCTAGGTTGGCCCAGCCATGGGGATGTAGTGTCCTGTGTGGCCTTGGCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS-3UTR CAA 90 bp AGGGCCAAGGCCACACAGGACACTACATCCCCATGGCTGGGCCAACCTAGGGGAGGGGGAGCTGCCTGGTaGGGAGGAGATGCCCGCCTT +
Preference number: 5 (lower is better)
Translates to: RAKATQDTTSPWLGQPRGGGAAW*GGDARL
Trigger: AAGGCGGGCATCTCCTCCCAACCAGGCAGCTCCCCC...TCCCCTAGGTTGGCCCAGCCATGGGGATGTAGTGTCCTGTGTGGCCTTGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000108479.2
CDS GCA 90 bp TGGGGGAGCTGCCTGGTTGGGAGGAGATGCCCTCTACAACTGACTTaGTGGGTGACCTGGGCCAACTTGCTTGCCCTGCCTGGGCCTCGG +
Preference number: 5 (lower is better)
Translates to: WGSCLVGRRCPLQLT*WVTWANLLALPGPR
Trigger: CCGAGGCCCAGGCAGGGCAAGCAAGTTGGCCCAGGTCACCCAGCAAGTCAGTTGTAGAGGGCATCTCCTCCCAACCAGGCAGCTCCCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS TCA 90 bp GCACCAGGTGTGCCCGGAAGGGTGCGGGTACGGGCCAGAGACGGATaGGGGGAGAGCACATCTTCTGTGAGGTCCCACAGGCAGAACTGT +
Preference number: 5 (lower is better)
Translates to: APGVPGRVRVRARDG*GESTSSVRSHRQNC
Trigger: ACAGTTCTGCCTGTGGGACCTCACAGAAGATGTGCTCTCCCCTCATCCGTCTCTGGCCCGTACCCGCACCCTTCCGGGCACACCTGGTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 90 bp CCGCCGCTCCTGCAGGGTCAGTGTGGCAAAGCGGCCAATGCTGAATaGTATGCCAGGCTCCATCGATGCACTAGGCCCACCAGCCTTGCC +
Preference number: 5 (lower is better)
Translates to: PPLLQGQCGKAANAE*YARLHRCTRPTSLA
Trigger: GGCAAGGCTGGTGGGCCTAGTGCATCGATGGAGCCTGGCATACCATTCAGCATTGGCCGCTTTGCCACACTGACCCTGCAGGAGCGGCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp GCCCCTGCCCTGCCCTCTCACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGAGAATGCAAACTCATaGAGGGGCCCCTCACCCACT +
Preference number: 5 (lower is better)
Translates to: APALPSHPGVLWAKSLPGENANS*RGPSPT
Trigger: AGTGGGTGAGGGGCCCCTCAATGAGTTTGCATTCTC...TCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTGAGAGGGCAGGGCAGGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 90 bp CAGCCTTGGGCAGTGGGGACACTGGGGCTCCTGTGTCTGAGCTGGTaGCTTCAGGCTCCTCCTCTTCACCACTGGGATCTCCATCAGCAC +
Preference number: 5 (lower is better)
Translates to: QPWAVGTLGLLCLSW*LQAPPLHHWDLHQH
Trigger: GTGCTGATGGAGATCCCAGTGGTGAAGAGGAGGAGCCTGAAGTCACCAGCTCAGACACAGGAGCCCCAGTGTCCCCACTGCCCAAGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS GCA 90 bp TGTGGCAAAGCGGCCAATGCTGAATGGTATGCCAGGCTCCATCGATaGACTAGGCCCACCAGCCTTGCCACCACCAGCTGGGTGTGGGAG +
Preference number: 5 (lower is better)
Translates to: CGKAANAEWYARLHR*TRPTSLATTSWVWE
Trigger: CTCCCACACCCAGCTGGTGGTGGCAAGGCTGGTGGGCCTAGTGCATCGATGGAGCCTGGCATACCATTCAGCATTGGCCGCTTTGCCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 90 bp CAGGCGTTCCTGAGCAATCTTCTTGCACACGAGAGGCTCCAGCAGTaGCACCTCATGGATCCGAGGGCACAGTGCCGTGCCCAGCACCTT +
Preference number: 5 (lower is better)
Translates to: QAFLSNLLAHERLQQ*HLMDPRAQCRAQHL
Trigger: AAGGTGCTGGGCACGGCACTGTGCCCTCGGATCCATGAGGTGCCACTGCTGGAGCCTCTCGTGTGCAAGAAGATTGCTCAGGAACGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 90 bp GTGAACGCCTTGCCTGGCCGGGCCCAGGTGCAGATGAGGCCCTCTTaGCAGGCAGTGATGATACAATCCTCCAGGAACAGTAGCACGGTC +
Preference number: 5 (lower is better)
Translates to: VNALPGRAQVQMRPS*QAVMIQSSRNSSTV
Trigger: GACCGTGCTACTGTTCCTGGAGGATTGTATCATCACTGCCTGCCAAGAGGGCCTCATCTGCACCTGGGCCCGGCCAGGCAAGGCGTTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS GCA 90 bp CCTCCAGGAACAGTAGCACGGTCAGGCGTTCCTGAGCAATCTTCTTaGACACGAGAGGCTCCAGCAGTGGCACCTCATGGATCCGAGGGC +
Preference number: 5 (lower is better)
Translates to: PPGTVARSGVPEQSS*TREAPAVAPHGSEG
Trigger: GCCCTCGGATCCATGAGGTGCCACTGCTGGAGCCTCTCGTGTGCAAGAAGATTGCTCAGGAACGCCTGACCGTGCTACTGTTCCTGGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp TGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGACAGGGCCAAGGGGGTGTGGGAGACTGTaGGAACGAGACAGGGAGCGG +
Preference number: 5 (lower is better)
Translates to: CFREQVIVLGSGWRTGPRGCGRL*ERDRER
Trigger: CCGCTCCCTGTCTCGTTCCAACAGTCTCCCACACCC...CCTTGGCCCTGTCCTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp GAGGTCCAGGGGAACAAGGAGGGCCCTCAGGGCTTCCATAATTTAACACTTTCACTAGGCCCACCAGCCTaGCCACCACCAGCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: EVQGNKEGPQGFHNLTLSLGPPA*PPPAGC
Trigger: ACACCCAGCTGGTGGTGGCAAGGCTGGTGGGCCTAG...TGAAAGTGTTAAATTATGGAAGCCCTGAGGGCCCTCCTTGTTCCCCTGGACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp CACCCAGGGGTACTGTGGGCTAAGTCTCTCCCAGGAGTGAACAGTCACATGCTGCCACTGAGCTTGTCATaGCTGCTATTGCCCCCACTG +
Preference number: 5 (lower is better)
Translates to: HPGVLWAKSLPGVNSHMLPLSLS*LLLPPL
Trigger: CAGTGGGGGCAATAGCAGCAATGACAAGCTCAGTGG...CAGCATGTGACTGTTCACTCCTGGGAGAGACTTAGCCCACAGTACCCCTGGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 90 bp ATAGACAGCAAAGCCCTCACCCTGTTTCAGCAGACTATACTGGGGTaGGGTGGAGGTGCAGGGGTGACTGACGTTGTAGAGGTACAGGTG +
Preference number: 5 (lower is better)
Translates to: IDSKALTLFQQTILG*GGGAGVTDVVEVQV
Trigger: CACCTGTACCTCTACAACGTCAGTCACCCCTGCACCTCCACCCCACCCCAGTATAGTCTGCTGAAACAGGGTGAGGGCTTTGCTGTCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 90 bp CACCCACTGCCCACTTGGCTAGTGGATTGCGGGGTGCCTTGCTTTTaGCTGCATAGACAGCAAAGCCCTCACCCTGTTTCAGCAGACTAT +
Preference number: 5 (lower is better)
Translates to: HPLPTWLVDCGVPCF*LHRQQSPHPVSADY
Trigger: ATAGTCTGCTGAAACAGGGTGAGGGCTTTGCTGTCTATGCAGCCAAAAGCAAGGCACCCCGCAATCCACTAGCCAAGTGGGCAGTGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 90 bp CGCAGAAGCATGCTGTCAAAGTGGAAGACACGCAGGCAGCCATCCTaGCTGACACAGGCTAAGTGTCGGCCATCAGGTGAGAATGCAAAC +
Preference number: 5 (lower is better)
Translates to: RRSMLSKWKTRRQPS*LTQAKCRPSGENAN
Trigger: GTTTGCATTCTCACCTGATGGCCGACACTTAGCCTGTGTCAGCCAGGATGGCTGCCTGCGTGTCTTCCACTTTGACAGCATGCTTCTGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp AGGGCCAAGGCCACACAGGACACTACATCCCCATGGCTGGGCCAACCTAGGGGATTCAAATATGTCACCTaGGTCTTGTCAATCAGCCGC +
Preference number: 5 (lower is better)
Translates to: RAKATQDTTSPWLGQPRGFKYVT*VLSISR
Trigger: GCGGCTGATTGACAAGACCAAGGTGACATATTTGAA...TCCCCTAGGTTGGCCCAGCCATGGGGATGTAGTGTCCTGTGTGGCCTTGGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 90 bp GTGATGATACAATCCTCCAGGAACAGTAGCACGGTCAGGCGTTCCTaGGCAATCTTCTTGCACACGAGAGGCTCCAGCAGTGGCACCTCA +
Preference number: 5 (lower is better)
Translates to: VMIQSSRNSSTVRRS*AIFLHTRGSSSGTS
Trigger: TGAGGTGCCACTGCTGGAGCCTCTCGTGTGCAAGAAGATTGCTCAGGAACGCCTGACCGTGCTACTGTTCCTGGAGGATTGTATCATCAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 90 bp GAAGCATGCTGTCAAAGTGGAAGACACGCAGGCAGCCATCCTGGCTaGCACAGGCTAAGTGTCGGCCATCAGGTGAGAATGCAAACTCAT +
Preference number: 5 (lower is better)
Translates to: EACCQSGRHAGSHPG*HRLSVGHQVRMQTH
Trigger: ATGAGTTTGCATTCTCACCTGATGGCCGACACTTAGCCTGTGTCAGCCAGGATGGCTGCCTGCGTGTCTTCCACTTTGACAGCATGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp AGGGCCAAGGCCACACAGGACACTACATCCCCATGGCTGGGCCAACCTAGGGGATCTTCATTGAATAGCTaGCTGGTGTCTTTCTTGATG +
Preference number: 5 (lower is better)
Translates to: RAKATQDTTSPWLGQPRGSSLNS*LVSFLM
Trigger: CATCAAGAAAGACACCAGCAAGCTATTCAATGAAGA...TCCCCTAGGTTGGCCCAGCCATGGGGATGTAGTGTCCTGTGTGGCCTTGGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp TGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGGGTGTGGGAGACTGTaGGAACGAGACAGGGAGCGG +
Preference number: 5 (lower is better)
Translates to: WLTLMFQRTGHCTWQWVEGCGRL*ERDRER
Trigger: CCGCTCCCTGTCTCGTTCCAACAGTCTCCCACACCC...CTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp CGTGGGGCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTAGGCCCACCAGCCTaGCCACCACCAGCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: RGAWSSPSIMISLVNTVILGPPA*PPPAGC
Trigger: ACACCCAGCTGGTGGTGGCAAGGCTGGTGGGCCTAG...AATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGCCCCACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp GAGGTCCAGGGGAACAAGGAGGGCCCTCAGGGCTTCCATAATTTAACACTTTCACCACTGAGCTTGTCATaGCTGCTATTGCCCCCACTG +
Preference number: 5 (lower is better)
Translates to: EVQGNKEGPQGFHNLTLSPLSLS*LLLPPL
Trigger: CAGTGGGGGCAATAGCAGCAATGACAAGCTCAGTGG...TGAAAGTGTTAAATTATGGAAGCCCTGAGGGCCCTCCTTGTTCCCCTGGACCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS GCA 90 bp TCATTGAATAGCTTGCTGGTGTCTTTCTTGATGAGGTCCAGATACTaGACCTGGCCGGCAGAGAAGCCCACCAGCAGGGAAATGGTCTCT +
Preference number: 5 (lower is better)
Translates to: SLNSLLVSFLMRSRY*TWPAEKPTSREMVS
Trigger: AGAGACCATTTCCCTGCTGGTGGGCTTCTCTGCCGGCCAGGTGCAGTATCTGGACCTCATCAAGAAAGACACCAGCAAGCTATTCAATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp CATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTGTGCGAAACTGCGACTaGATCTCCGCGCAGTCGCCC +
Preference number: 5 (lower is better)
Translates to: HAGTGIWLTLMFQRTGHCVRNCD*ISAQSP
Trigger: GGGCGACTGCGCGGAGATCAAGTCGCAGTTTCGCAC...ACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp ATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCAGCGGGGAGGGTTATTCGTCTGTGAACGCCTaGCCTGGCCGGGCCCAGGTG +
Preference number: 5 (lower is better)
Translates to: IMISLVNTVILEVSGEGYSSVNA*PGRAQV
Trigger: CACCTGGGCCCGGCCAGGCAAGGCGTTCACAGACGA...ATAACCCTCCCCGCTGACCTCAAGAATCACTGTATTAACAAGACTAATCATGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS TCA 90 bp GAGGTACAGGTGGCCACTGGCGTGAGAAGCAAGGAACAGACTCTCTaGCTCAGGCAGCCACTTCAAATATGTCACCTTGGTCTTGTCAAT +
Preference number: 5 (lower is better)
Translates to: EVQVATGVRSKEQTL*LRQPLQICHLGLVN
Trigger: ATTGACAAGACCAAGGTGACATATTTGAAGTGGCTGCCTGAGTCAGAGAGTCTGTTCCTTGCTTCTCACGCCAGTGGCCACCTGTACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp ATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCAGCGGGGAGGGTTATGGGGGAGCTGCCTGGTaGGGAGGAGATGCCCTCTAC +
Preference number: 5 (lower is better)
Translates to: IMISLVNTVILEVSGEGYGGAAW*GGDALY
Trigger: GTAGAGGGCATCTCCTCCCAACCAGGCAGCTCCCCC...ATAACCCTCCCCGCTGACCTCAAGAATCACTGTATTAACAAGACTAATCATGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS-3UTR CAA 90 bp GCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTGCGAAACTGCGACTaGATCTCCGCGCAGTCGCCC +
Preference number: 5 (lower is better)
Translates to: AWSSPSIMISLVNTVILEVRNCD*ISAQSP
Trigger: GGGCGACTGCGCGGAGATCAAGTCGCAGTTTCGCAC...CTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp TGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGGAGGAGAATGCAAACTCATaGAGGGGCCCCTCACCCACT +
Preference number: 5 (lower is better)
Translates to: WLTLMFQRTGHCTWQWVEENANS*RGPSPT
Trigger: AGTGGGTGAGGGGCCCCTCAATGAGTTTGCATTCTC...CTCCACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp ACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGGCAGATGAGGCCCTCTaGGCAGGCAGTGATGATACA +
Preference number: 5 (lower is better)
Translates to: TVTCWDRDMVNTDVSENRADEAL*AGSDDT
Trigger: TGTATCATCACTGCCTGCCAAGAGGGCCTCATCTGC...CCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp AACACTTTCAAAATCACAGACCATAGCAAGGGGTGGAGTTTGGGCAGGAGTGGGTTGCTGGTGTCTTTCTaGATGAGGTCCAGATACTGC +
Preference number: 5 (lower is better)
Translates to: NTFKITDHSKGWSLGRSGLLVSF*MRSRYC
Trigger: GCAGTATCTGGACCTCATCAAGAAAGACACCAGCAA...CCCACTCCTGCCCAAACTCCACCCCTTGCTATGGTCTGTGATTTTGAAAGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp CATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTCACTTGGCTAGTGGATaGCGGGGTGCCTTGCTTTTG +
Preference number: 5 (lower is better)
Translates to: HAGTGIWLTLMFQRTGHCHLASG*RGALLL
Trigger: CAAAAGCAAGGCACCCCGCAATCCACTAGCCAAGTG...ACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp CGTGGGGCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCACTTGGCTAGTGGATaGCGGGGTGCCTTGCTTTTG +
Preference number: 5 (lower is better)
Translates to: RGAWSSPSIMISLVNTVIHLASG*RGALLL
Trigger: CAAAAGCAAGGCACCCCGCAATCCACTAGCCAAGTG...AATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGCCCCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp ATATGGTTAACACTGATGTTTCAGAGAACAGGTCATTGTACTTGGCAGTGGGTGCCCTCTACAACTGACTaGCTGGGTGACCTGGGCCAA +
Preference number: 5 (lower is better)
Translates to: IWLTLMFQRTGHCTWQWVPSTTD*LGDLGQ
Trigger: TTGGCCCAGGTCACCCAGCAAGTCAGTTGTAGAGGG...CACCCACTGCCAAGTACAATGACCTGTTCTCTGAAACATCAGTGTTAACCATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS-3UTR CAA 90 bp ACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACAGGATCAGCCGCTCTTCATaGAATAGCTTGCTGGTGTCT +
Preference number: 5 (lower is better)
Translates to: TVTCWDRDMVNTDVSENRISRSS*NSLLVS
Trigger: AGACACCAGCAAGCTATTCAATGAAGAGCGGCTGAT...CCTGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp AGTGAACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGATTGCTGGTGTCTTTCTaGATGAGGTCCAGATACTGC +
Preference number: 5 (lower is better)
Translates to: SEQSHAGTGIWLTLMFQRLLVSF*MRSRYC
Trigger: GCAGTATCTGGACCTCATCAAGAAAGACACCAGCAA...TCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGTTCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp AGTGAACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGATATGTCACCTTGGTCTaGTCAATCAGCCGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: SEQSHAGTGIWLTLMFQRYVTLV*SISRSS
Trigger: TGAAGAGCGGCTGATTGACAAGACCAAGGTGACATA...TCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGTTCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp GAACAGTCACATGCTGGGACAGGGATATGGTTAACACTGATGTTTCAGAGAACATTCAAATATGTCACCTaGGTCTTGTCAATCAGCCGC +
Preference number: 5 (lower is better)
Translates to: EQSHAGTGIWLTLMFQRTFKYVT*VLSISR
Trigger: GCGGCTGATTGACAAGACCAAGGTGACATATTTGAA...TGTTCTCTGAAACATCAGTGTTAACCATATCCCTGTCCCAGCATGTGACTGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp TGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGGTCATCAGCCGCTCTTCATaGAATAGCTTGCTGGTGTCT +
Preference number: 5 (lower is better)
Translates to: WSSPSIMISLVNTVILEVISRSS*NSLLVS
Trigger: AGACACCAGCAAGCTATTCAATGAAGAGCGGCTGAT...GACCTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS-3UTR CAA 90 bp GCTTGGAGCAGTCCTTCCATCATGATTAGTCTTGTTAATACAGTGATTCTTGAGTATGTCACCTTGGTCTaGTCAATCAGCCGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: AWSSPSIMISLVNTVILEYVTLV*SISRSS
Trigger: TGAAGAGCGGCTGATTGACAAGACCAAGGTGACATA...CTCAAGAATCACTGTATTAACAAGACTAATCATGATGGAAGGACTGCTCCAAGC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 72 bp AGACGCGGTCTCCTCCCGCGCCCAGTCCGGAGGGCGTaGAGGGCGGCTCCCCAGCGCCATCCGGGTCGCCTA +
Preference number: 6 (lower is better)
Translates to: RRGLLPRPVRRA*RAAPQRHPGRL
Trigger: TAGGCGACCCGGATGGCGCTGGGGAGCCGCCCTCCACGCCCTCCGGACTGGGCGCGGGAGGAGACCGCGTCT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 72 bp GCTTGTAGAAGCCCTCGCGGGTGCGAAACTGCGACTTaGTCTCCGCGCAGTCGCCCATGGCGGCGCTGGGGC +
Preference number: 6 (lower is better)
Translates to: ACRSPRGCETAT*SPRSRPWRRWG
Trigger: GCCCCAGCGCCGCCATGGGCGACTGCGCGGAGATCAAGTCGCAGTTTCGCACCCGCGAGGGCTTCTACAAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 72 bp TCTCTCCGGCCCGAGAACTACCAGAAGCTGGTGGGGTaGCACCAGGTGTGCCCGGAAGGGTGCGGGTACGGG +
Preference number: 6 (lower is better)
Translates to: SLRPENYQKLVG*HQVCPEGCGYG
Trigger: CCCGTACCCGCACCCTTCCGGGCACACCTGGTGCCACCCCACCAGCTTCTGGTAGTTCTCGGGCCGGAGAGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 72 bp CTGGGCCTCGGTCTCCTCGTCTGTGAACGCCTTGCCTaGCCGGGCCCAGGTGCAGATGAGGCCCTCTTGGCA +
Preference number: 6 (lower is better)
Translates to: LGLGLLVCERLA*PGPGADEALLA
Trigger: TGCCAAGAGGGCCTCATCTGCACCTGGGCCCGGCCAGGCAAGGCGTTCACAGACGAGGAGACCGAGGCCCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS CAA 90 bp CTAGGCCCACCAGCCTTGCCACCACCAGCTGGGTGTGGGAGACTGTaGGAACGAGACAGGGAGCGGGGCAGGGGGCCTGCACCTGTCTCT +
Preference number: 6 (lower is better)
Translates to: LGPPALPPPAGCGRL*ERDRERGRGPAPVS
Trigger: AGAGACAGGTGCAGGCCCCCTGCCCCGCTCCCTGTCTCGTTCCAACAGTCTCCCACACCCAGCTGGTGGTGGCAAGGCTGGTGGGCCTAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 72 bp GTGCCCGGAAGGGTGCGGGTACGGGCCAGAGACGGATaGGGGGAGAGCACATCTTCTGTGAGGTCCCACAGG +
Preference number: 6 (lower is better)
Translates to: VPGRVRVRARDG*GESTSSVRSHR
Trigger: CCTGTGGGACCTCACAGAAGATGTGCTCTCCCCTCATCCGTCTCTGGCCCGTACCCGCACCCTTCCGGGCAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS GCA 72 bp GAGAACTACCAGAAGCTGGTGGGGTGGCACCAGGTGTaGCCGGAAGGGTGCGGGTACGGGCCAGAGACGGAT +
Preference number: 6 (lower is better)
Translates to: ENYQKLVGWHQV*PEGCGYGPETD
Trigger: ATCCGTCTCTGGCCCGTACCCGCACCCTTCCGGGCACACCTGGTGCCACCCCACCAGCTTCTGGTAGTTCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 72 bp ACTAGGCCCACCAGCCTTGCCACCACCAGCTGGGTGTaGGAGACTGTTGGAACGAGACAGGGAGCGGGGCAG +
Preference number: 6 (lower is better)
Translates to: TRPTSLATTSWV*ETVGTRQGAGQ
Trigger: CTGCCCCGCTCCCTGTCTCGTTCCAACAGTCTCCCACACCCAGCTGGTGGTGGCAAGGCTGGTGGGCCTAGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CAA 90 bp CTGGGGGAGCTGCCTGGTTGGGAGGAGATGCCCTCTACAACTGACTaGCTGGGTGACCTGGGCCAACTTGCTTGCCCTGCCTGGGCCTCG +
Preference number: 6 (lower is better)
Translates to: LGELPGWEEMPSTTD*LGDLGQLACPAWAS
Trigger: CGAGGCCCAGGCAGGGCAAGCAAGTTGGCCCAGGTCACCCAGCAAGTCAGTTGTAGAGGGCATCTCCTCCCAACCAGGCAGCTCCCCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS TCA 72 bp GGGTCCCCTTGTAGATCCGCTTGTCGATGGGCTTGTTaGGATCGATGGACCGCTGGCTCCCGCTGCGGCAGC +
Preference number: 6 (lower is better)
Translates to: GSPCRSACRWAC*DRWTAGSRCGS
Trigger: GCTGCCGCAGCGGGAGCCAGCGGTCCATCGATCTCAACAAGCCCATCGACAAGCGGATCTACAAGGGGACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS GCA 72 bp CTCCAGCAGTGGCACCTCATGGATCCGAGGGCACAGTaGCGTGCCCAGCACCTTAGCTGGGTCCAATCGGCT +
Preference number: 6 (lower is better)
Translates to: LQQWHLMDPRAQ*RAQHLSWVQSA
Trigger: AGCCGATTGGACCCAGCTAAGGTGCTGGGCACGGCACTGTGCCCTCGGATCCATGAGGTGCCACTGCTGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CAA 72 bp CCAGCTGAGCCAAAGCGGTACGTGATGGAGCCAGCCTaGGGCAGTGGGGACACTGGGGCTCCTGTGTCTGAG +
Preference number: 6 (lower is better)
Translates to: PAEPKRYVMEPA*GSGDTGAPVSE
Trigger: CTCAGACACAGGAGCCCCAGTGTCCCCACTGCCCAAGGCTGGCTCCATCACGTACCGCTTTGGCTCAGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CAA 90 bp GTGTCCTGGCCAGCTGAGCCAAAGCGGTACGTGATGGAGCCAGCCTaGGGCAGTGGGGACACTGGGGCTCCTGTGTCTGAGCTGGTGACT +
Preference number: 6 (lower is better)
Translates to: VSWPAEPKRYVMEPA*GSGDTGAPVSELVT
Trigger: AGTCACCAGCTCAGACACAGGAGCCCCAGTGTCCCCACTGCCCAAGGCTGGCTCCATCACGTACCGCTTTGGCTCAGCTGGCCAGGACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS GCA 72 bp GCGGCCAATGCTGAATGGTATGCCAGGCTCCATCGATaGACTAGGCCCACCAGCCTTGCCACCACCAGCTGG +
Preference number: 6 (lower is better)
Translates to: AANAEWYARLHR*TRPTSLATTSW
Trigger: CCAGCTGGTGGTGGCAAGGCTGGTGGGCCTAGTGCATCGATGGAGCCTGGCATACCATTCAGCATTGGCCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 72 bp GCAGTGGGGACACTGGGGCTCCTGTGTCTGAGCTGGTaGCTTCAGGCTCCTCCTCTTCACCACTGGGATCTC +
Preference number: 6 (lower is better)
Translates to: AVGTLGLLCLSW*LQAPPLHHWDL
Trigger: GAGATCCCAGTGGTGAAGAGGAGGAGCCTGAAGTCACCAGCTCAGACACAGGAGCCCCAGTGTCCCCACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS GCA 72 bp TTGTGTTCCTTCTCAGCTCCCCGGTCCCGCCGCTCCTaGAGGGTCAGTGTGGCAAAGCGGCCAATGCTGAAT +
Preference number: 6 (lower is better)
Translates to: LCSFSAPRSRRS*RVSVAKRPMLN
Trigger: ATTCAGCATTGGCCGCTTTGCCACACTGACCCTGCAGGAGCGGCGGGACCGGGGAGCTGAGAAGGAACACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 72 bp CTGAGCAATCTTCTTGCACACGAGAGGCTCCAGCAGTaGCACCTCATGGATCCGAGGGCACAGTGCCGTGCC +
Preference number: 6 (lower is better)
Translates to: LSNLLAHERLQQ*HLMDPRAQCRA
Trigger: GGCACGGCACTGTGCCCTCGGATCCATGAGGTGCCACTGCTGGAGCCTCTCGTGTGCAAGAAGATTGCTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 72 bp CTGGTTGGGAGGAGATGCCCTCTACAACTGACTTGCTaGGTGACCTGGGCCAACTTGCTTGCCCTGCCTGGG +
Preference number: 6 (lower is better)
Translates to: LVGRRCPLQLTC*VTWANLLALPG
Trigger: CCCAGGCAGGGCAAGCAAGTTGGCCCAGGTCACCCAGCAAGTCAGTTGTAGAGGGCATCTCCTCCCAACCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS CAA 72 bp CTGCCTGGTTGGGAGGAGATGCCCTCTACAACTGACTaGCTGGGTGACCTGGGCCAACTTGCTTGCCCTGCC +
Preference number: 6 (lower is better)
Translates to: LPGWEEMPSTTD*LGDLGQLACPA
Trigger: GGCAGGGCAAGCAAGTTGGCCCAGGTCACCCAGCAAGTCAGTTGTAGAGGGCATCTCCTCCCAACCAGGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS GCA 72 bp TGCCTGGTTGGGAGGAGATGCCCTCTACAACTGACTTaGTGGGTGACCTGGGCCAACTTGCTTGCCCTGCCT +
Preference number: 6 (lower is better)
Translates to: CLVGRRCPLQLT*WVTWANLLALP
Trigger: AGGCAGGGCAAGCAAGTTGGCCCAGGTCACCCAGCAAGTCAGTTGTAGAGGGCATCTCCTCCCAACCAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032570.14
CDS CCA 72 bp ACCAGCAGGGAAATGGTCTCTGTGGCAGCTGTGAACTaGTTGAAGTCGTGGCAGGTGGGCTGGGTCCCCTTG +
Preference number: 6 (lower is better)
Translates to: TSREMVSVAAVN*LKSWQVGWVPL
Trigger: CAAGGGGACCCAGCCCACCTGCCACGACTTCAACCAGTTCACAGCTGCCACAGAGACCATTTCCCTGCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 72 bp CTGCAGGGTCAGTGTGGCAAAGCGGCCAATGCTGAATaGTATGCCAGGCTCCATCGATGCACTAGGCCCACC +
Preference number: 6 (lower is better)
Translates to: LQGQCGKAANAE*YARLHRCTRPT
Trigger: GGTGGGCCTAGTGCATCGATGGAGCCTGGCATACCATTCAGCATTGGCCGCTTTGCCACACTGACCCTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS GCA 72 bp CCACTGCCCACTTGGCTAGTGGATTGCGGGGTGCCTTaGTTTTGGCTGCATAGACAGCAAAGCCCTCACCCT +
Preference number: 6 (lower is better)
Translates to: PLPTWLVDCGVP*FWLHRQQSPHP
Trigger: AGGGTGAGGGCTTTGCTGTCTATGCAGCCAAAAGCAAGGCACCCCGCAATCCACTAGCCAAGTGGGCAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 72 bp CTAAGTGTCGGCCATCAGGTGAGAATGCAAACTCATTaGGGGGCCCCTCACCCACTGCCCACTTGGCTAGTG +
Preference number: 6 (lower is better)
Translates to: LSVGHQVRMQTH*GAPHPLPTWLV
Trigger: CACTAGCCAAGTGGGCAGTGGGTGAGGGGCCCCTCAATGAGTTTGCATTCTCACCTGATGGCCGACACTTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS GCA 72 bp AGCTTGCTGGTGTCTTTCTTGATGAGGTCCAGATACTaGACCTGGCCGGCAGAGAAGCCCACCAGCAGGGAA +
Preference number: 6 (lower is better)
Translates to: SLLVSFLMRSRY*TWPAEKPTSRE
Trigger: TTCCCTGCTGGTGGGCTTCTCTGCCGGCCAGGTGCAGTATCTGGACCTCATCAAGAAAGACACCAGCAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS GCA 72 bp ACAGTAGCACGGTCAGGCGTTCCTGAGCAATCTTCTTaGACACGAGAGGCTCCAGCAGTGGCACCTCATGGA +
Preference number: 6 (lower is better)
Translates to: TVARSGVPEQSS*TREAPAVAPHG
Trigger: TCCATGAGGTGCCACTGCTGGAGCCTCTCGTGTGCAAGAAGATTGCTCAGGAACGCCTGACCGTGCTACTGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 72 bp TGTCAAAGTGGAAGACACGCAGGCAGCCATCCTGGCTaGCACAGGCTAAGTGTCGGCCATCAGGTGAGAATG +
Preference number: 6 (lower is better)
Translates to: CQSGRHAGSHPG*HRLSVGHQVRM
Trigger: CATTCTCACCTGATGGCCGACACTTAGCCTGTGTCAGCCAGGATGGCTGCCTGCGTGTCTTCCACTTTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS TCA 72 bp CAATCCTCCAGGAACAGTAGCACGGTCAGGCGTTCCTaGGCAATCTTCTTGCACACGAGAGGCTCCAGCAGT +
Preference number: 6 (lower is better)
Translates to: QSSRNSSTVRRS*AIFLHTRGSSS
Trigger: ACTGCTGGAGCCTCTCGTGTGCAAGAAGATTGCTCAGGAACGCCTGACCGTGCTACTGTTCCTGGAGGATTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CCA 72 bp CCCACTTGGCTAGTGGATTGCGGGGTGCCTTGCTTTTaGCTGCATAGACAGCAAAGCCCTCACCCTGTTTCA +
Preference number: 6 (lower is better)
Translates to: PTWLVDCGVPCF*LHRQQSPHPVS
Trigger: TGAAACAGGGTGAGGGCTTTGCTGTCTATGCAGCCAAAAGCAAGGCACCCCGCAATCCACTAGCCAAGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CAA 90 bp TTGTCAATCAGCCGCTCTTCATTGAATAGCTTGCTGGTGTCTTTCTaGATGAGGTCCAGATACTGCACCTGGCCGGCAGAGAAGCCCACC +
Preference number: 6 (lower is better)
Translates to: LSISRSSLNSLLVSF*MRSRYCTWPAEKPT
Trigger: GGTGGGCTTCTCTGCCGGCCAGGTGCAGTATCTGGACCTCATCAAGAAAGACACCAGCAAGCTATTCAATGAAGAGCGGCTGATTGACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CAA 90 bp TATGTCACCTTGGTCTTGTCAATCAGCCGCTCTTCATTGAATAGCTaGCTGGTGTCTTTCTTGATGAGGTCCAGATACTGCACCTGGCCG +
Preference number: 6 (lower is better)
Translates to: YVTLVLSISRSSLNS*LVSFLMRSRYCTWP
Trigger: CGGCCAGGTGCAGTATCTGGACCTCATCAAGAAAGACACCAGCAAGCTATTCAATGAAGAGCGGCTGATTGACAAGACCAAGGTGACATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2
CDS CAA 72 bp GACTCAGGCAGCCACTTCAAATATGTCACCTTGGTCTaGTCAATCAGCCGCTCTTCATTGAATAGCTTGCTG +
Preference number: 6 (lower is better)
Translates to: DSGSHFKYVTLV*SISRSSLNSLL
Trigger: CAGCAAGCTATTCAATGAAGAGCGGCTGATTGACAAGACCAAGGTGACATATTTGAAGTGGCTGCCTGAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032570.14
ENSMUST00000108479.2