RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DMTN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022099

Ensembl transcript IDs: ENSMUST00000022694.17, ENSMUST00000022695.16, ENSMUST00000110984.4, ENSMUST00000227331.2, ENSMUST00000228001.2, ENSMUST00000228009.2, ENSMUST00000228295.2, ENSMUST00000228824.2

Found 360 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCTCCGTGAGGAATGGAGCCCAACGTTTCTGCCCTGCCTCCCGCTaGTCCCAGCCAGCAGAGGAAGAGGACACTGTAGGGAAGGGTCTC +
Preference number: 1 (lower is better)
Translates to: LSVRNGAQRFCPASR*SQPAEEEDTVGKGL
Trigger: GAGACCCTTCCCTACAGTGTCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGGGCAGAAACGTTGGGCTCCATTCCTCACGGAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 90 bp CTTCTTGGCTCTCTCCGTGAGGAATGGAGCCCAACGTTTCTGCCCTaGCTCCCGCTGCTCCCAGCCAGCAGAGGAAGAGGACACTGTAGG +
Preference number: 1 (lower is better)
Translates to: LLGSLREEWSPTFLP*LPLLPASRGRGHCR
Trigger: CCTACAGTGTCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGGGCAGAAACGTTGGGCTCCATTCCTCACGGAGAGAGCCAAGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR CCA 90 bp AGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTaGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGG +
Preference number: 1 (lower is better)
Translates to: REHSRRCMAMEGPGS*DSPSHLREAEAWAR
Trigger: CCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 90 bp CCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTaGAGCTGGCTGGAGCCTTTGGGTGGACAGGCACAGGGTCCCAGA +
Preference number: 1 (lower is better)
Translates to: PVREASGPSAGNCQE*SWLEPLGGQAQGPR
Trigger: TCTGGGACCCTGTGCCTGTCCACCCAAAGGCTCCAGCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR CCA 90 bp CTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTaGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAG +
Preference number: 1 (lower is better)
Translates to: LHPILGRLRPGLGGP*TGARTVHPIWFCLE
Trigger: CTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 90 bp AGGGAGGATGACCTCCCAGCTGGAGGTCCAGGTAGAGCCTGCTTCTaGCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGG +
Preference number: 1 (lower is better)
Translates to: REDDLPAGGPGRACF*QLEKHQAQVQETAR
Trigger: CCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTGGCAGAAGCAGGCTCTACCTGGACCTCCAGCTGGGAGGTCATCCTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 90 bp GGCACCAAGGCACCATTTGTCCCTCAGTTACCAGGTCTCCGTTCCTaGTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGG +
Preference number: 1 (lower is better)
Translates to: GTKAPFVPQLPGLRS*FLCSVLGSQVVTSW
Trigger: CCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGGAGACCTGGTAACTGAGGGACAAATGGTGCCTTGGTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR CCA 90 bp CCCTCAGTTACCAGGTCTCCGTTCCTGCTTCCTCTGCTCAGTGCTTaGCAGCCAGGTGGTAACCTCCTGGTAACGTTTTCTGCTGGGCTT +
Preference number: 1 (lower is better)
Translates to: PSVTRSPFLLPLLSA*QPGGNLLVTFSAGL
Trigger: AAGCCCAGCAGAAAACGTTACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGGAGACCTGGTAACTGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR GCA 90 bp CCTGTGCAAGCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTaGACACTCAGCCCCACCTTGGGCACGCAGCTCCATAGTGGTTGC +
Preference number: 1 (lower is better)
Translates to: PVQAHPVFFLIFQSN*TLSPTLGTQLHSGC
Trigger: GCAACCACTATGGAGCTGCGTGCCCAAGGTGGGGCTGAGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGCTTGCACAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR TCA 90 bp GACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCCAGCATaGTCACACACACAGTGGACAGGGAGTGCCAGGGTCTGGGTAAAA +
Preference number: 1 (lower is better)
Translates to: DPVQPFNSKQLPLPA*SHTQWTGSARVWVK
Trigger: TTTTACCCAGACCCTGGCACTCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR TCA 90 bp GGCACCTTGGGTCCTAGGGAGGCCGGTGTGTTTGAGGTCATCTTCTaGGGCTCTGTCAAGCTCTCTCTAGCTACAAAAGATAGCTTTCTG +
Preference number: 1 (lower is better)
Translates to: GTLGPREAGVFEVIF*GSVKLSLATKDSFL
Trigger: CAGAAAGCTATCTTTTGTAGCTAGAGAGAGCTTGACAGAGCCTCAGAAGATGACCTCAAACACACCGGCCTCCCTAGGACCCAAGGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR GCA 90 bp GAAGTGCAATTAGGTAGGGCAGGGAGTCAGGGAAGCAGCAGAGGGTaGCCCAATAAATTACATTCTGTAGAGAGCACAGTAGGAGATGCA +
Preference number: 1 (lower is better)
Translates to: EVQLGRAGSQGSSRG*PNKLHSVESTVGDA
Trigger: TGCATCTCCTACTGTGCTCTCTACAGAATGTAATTTATTGGGGCACCCTCTGCTGCTTCCCTGACTCCCTGCCCTACCTAATTGCACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR CCA 90 bp AATAAATTACATTCTGTAGAGAGCACAGTAGGAGATGCATGGCAATaGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGG +
Preference number: 1 (lower is better)
Translates to: NKLHSVESTVGDAWQ*RDLGAGTLHPILGR
Trigger: CCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGAATGTAATTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR CCA 90 bp TCCATGTTGTCTGATAACATATGCGGAACCCAGTCCTGCTTCCCCTaGAAAAATGGCTATATCTCTCCAGTGCTGGGCAGCTGGAGATGT +
Preference number: 1 (lower is better)
Translates to: SMLSDNICGTQSCFP*KNGYISPVLGSWRC
Trigger: ACATCTCCAGCTGCCCAGCACTGGAGAGATATAGCCATTTTTCCAGGGGAAGCAGGACTGGGTTCCGCATATGTTATCAGACAACATGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR CAA 90 bp GGCCCAAGTGCAGGAAACTGCCAGGAGTGCAGCTGGCTGGAGCCTTaGGGTGGACAGGCACAGGGTCCCAGAGCTGCCGCCTCCCCCTGT +
Preference number: 2 (lower is better)
Translates to: GPSAGNCQECSWLEP*GGQAQGPRAAASPC
Trigger: ACAGGGGGAGGCGGCAGCTCTGGGACCCTGTGCCTGTCCACCCAAAGGCTCCAGCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGACAGGGTCCCAGAGCTaGCGCCTCCCCCTGTACAGG +
Preference number: 2 (lower is better)
Translates to: WDSPSHLREAEAWARWSLTGSQS*RLPLYR
Trigger: CCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGT...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp ATGGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCACAGGGTCCCAGAGCTaGCGCCTCCCCCTGTACAGG +
Preference number: 2 (lower is better)
Translates to: MEGPGSWDSPSHLREAEATGSQS*RLPLYR
Trigger: CCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGT...GGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR TCA 90 bp ATGGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCAAGCTAGAGGGAGGATaGCCTCCCAGCTGGAGGTCC +
Preference number: 2 (lower is better)
Translates to: MEGPGSWDSPSHLREAEAKLEGG*PPSWRS
Trigger: GGACCTCCAGCTGGGAGGTCATCCTCCCTCTAGCTT...GGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCCCAACGTTTCTGCCCTaGCTCCCGCTGCTCCCAGCC +
Preference number: 2 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCPTFLP*LPLLPA
Trigger: GGCTGGGAGCAGCGGGAGGCAGGGCAGAAACGTTGG...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGGGAAACTGCCAGGAGTaGAGCTGGCTGGAGCCTTTG +
Preference number: 2 (lower is better)
Translates to: WDSPSHLREAEAWARWSLGNCQE*SWLEPL
Trigger: CAAAGGCTCCAGCCAGCTGCACTCCTGGCAGTTTCC...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp CCCCTGGAAAGGTGGCAAGTAGCAGTCTCTCTAGGCCAGCCCTTGCTCCTGCGTGCTGGCTGGAGCCTTTaGGTGGACAGGCACAGGGTC +
Preference number: 2 (lower is better)
Translates to: PLERWQVAVSLGQPLLLRAGWSL*VDRHRV
Trigger: GACCCTGTGCCTGTCCACCCAAAGGCTCCAGCCAGC...ACGCAGGAGCAAGGGCTGGCCTAGAGAGACTGCTACTTGCCACCTTTCCAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp GTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGACTCCAACGTTTCTGCCCTaGCTCCCGCTGCTCCCAGCC +
Preference number: 2 (lower is better)
Translates to: VESTVGDAWQWRDLGAGTPTFLP*LPLLPA
Trigger: GGCTGGGAGCAGCGGGAGGCAGGGCAGAAACGTTGG...AGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp CAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCAGCTGGCCCAACGTTTCTGCCCTaGCTCCCGCTGCTCCCAGCC +
Preference number: 2 (lower is better)
Translates to: QLEKHQAQVQETARSAAGPTFLP*LPLLPA
Trigger: GGCTGGGAGCAGCGGGAGGCAGGGCAGAAACGTTGG...GCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGGGTGCAAACATTGTGTaGTGGAGTCCGGGCTGGGTT +
Preference number: 2 (lower is better)
Translates to: WDSPSHLREAEAWARWSLGANIV*WSPGWV
Trigger: AACCCAGCCCGGACTCCAGCACACAATGTTTGCACC...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGACAGGGTCCCAGAGCTaGCGCCTCCCCCTGTACAGG +
Preference number: 2 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGTGSQS*RLPLYR
Trigger: CCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGT...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp CAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCAGCTGGCACAGGGTCCCAGAGCTaGCGCCTCCCCCTGTACAGG +
Preference number: 2 (lower is better)
Translates to: QLEKHQAQVQETARSAAGTGSQS*RLPLYR
Trigger: CCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGT...GCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp ATGGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCGGAAACTGCCAGGAGTaGAGCTGGCTGGAGCCTTTG +
Preference number: 2 (lower is better)
Translates to: MEGPGSWDSPSHLREAEAGNCQE*SWLEPL
Trigger: CAAAGGCTCCAGCCAGCTGCACTCCTGGCAGTTTCC...GGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp CCGTTCCTGCTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGGTAGCCAGCCCTTGCTCCTaGGTCCTAGAGAGGAACGGG +
Preference number: 2 (lower is better)
Translates to: PFLLPLLSAWQPGGNLLVASPCS*VLERNG
Trigger: CCCGTTCCTCTCTAGGACGCAGGAGCAAGGGCTGGC...TACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp ATGGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCGGTGCAAACATTGTGTaGTGGAGTCCGGGCTGGGTT +
Preference number: 2 (lower is better)
Translates to: MEGPGSWDSPSHLREAEAGANIV*WSPGWV
Trigger: AACCCAGCCCGGACTCCAGCACACAATGTTTGCACC...GGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp CTTCTGCCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCACAGGGTCCCAGAGCTaGCGCCTCCCCCTGTACAGG +
Preference number: 2 (lower is better)
Translates to: LLPVREASGPSAGNCQECTGSQS*RLPLYR
Trigger: CCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGT...GCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTGGCAGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp CCGTTCCTGCTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGGTAGGCAATGGAGGGACCTaGGAGCTGGGACTCTCCATC +
Preference number: 2 (lower is better)
Translates to: PFLLPLLSAWQPGGNLLVGNGGT*ELGLSI
Trigger: GATGGAGAGTCCCAGCTCCCAGGTCCCTCCATTGCC...TACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp GCAGAGTGTCTACTTAGCACACACAAAGCCTGGGTTGGCTCCCTAGCCCCAAATCCAACGTTTCTGCCCTaGCTCCCGCTGCTCCCAGCC +
Preference number: 2 (lower is better)
Translates to: AECLLSTHKAWVGSLAPNPTFLP*LPLLPA
Trigger: GGCTGGGAGCAGCGGGAGGCAGGGCAGAAACGTTGG...ATTTGGGGCTAGGGAGCCAACCCAGGCTTTGTGTGTGCTAAGTAGACACTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp GCAGAGTGTCTACTTAGCACACACAAAGCCTGGGTTGGCTCCCTAGCCCCAAATGGAGCCCAACGTTTCTaGCCTGCCTCCCGCTGCTCC +
Preference number: 2 (lower is better)
Translates to: AECLLSTHKAWVGSLAPNGAQRF*PASRCS
Trigger: GGAGCAGCGGGAGGCAGGGCAGAAACGTTGGGCTCC...ATTTGGGGCTAGGGAGCCAACCCAGGCTTTGTGTGTGCTAAGTAGACACTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGGGTAGAGCCTGCTTCTaGCAGTTAGAGAAGCATCAG +
Preference number: 2 (lower is better)
Translates to: WDSPSHLREAEAWARWSLGRACF*QLEKHQ
Trigger: CTGATGCTTCTCTAACTGGCAGAAGCAGGCTCTACC...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGTGCCAGGAGTGCAGCTaGCTGGAGCCTTTGGGTGGA +
Preference number: 2 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGCQECS*LEPLGG
Trigger: TCCACCCAAAGGCTCCAGCCAGCTGCACTCCTGGCA...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGGGAAACTGCCAGGAGTaGAGCTGGCTGGAGCCTTTG +
Preference number: 2 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGGNCQE*SWLEPL
Trigger: CAAAGGCTCCAGCCAGCTGCACTCCTGGCAGTTTCC...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp CCCCTGGAAAGGTGGCAAGTAGCAGTCTCTCTAGGCCAGCCCTTGCTCCTGCGTCATCCTATCTGGTTTTaGCTGGAGGCTGGTGGTGGT +
Preference number: 2 (lower is better)
Translates to: PLERWQVAVSLGQPLLLRHPIWF*LEAGGG
Trigger: ACCACCACCAGCCTCCAGGCAAAACCAGATAGGATG...ACGCAGGAGCAAGGGCTGGCCTAGAGAGACTGCTACTTGCCACCTTTCCAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CCA 90 bp GGTGGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGCTGGGGACTCTCATGTaGGGTGACAGACAGGGAACG +
Preference number: 2 (lower is better)
Translates to: GGPWTGARTVHPIWFCLELGTLM*GDRQGT
Trigger: CGTTCCCTGTCTGTCACCCCACATGAGAGTCCCCAG...CTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp GTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGACTCTGGGGACTCTCATGTaGGGTGACAGACAGGGAACG +
Preference number: 2 (lower is better)
Translates to: VESTVGDAWQWRDLGAGTLGTLM*GDRQGT
Trigger: CGTTCCCTGTCTGTCACCCCACATGAGAGTCCCCAG...AGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGCTGGGGACTCTCATGTaGGGTGACAGACAGGGAACG +
Preference number: 2 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGLGTLM*GDRQGT
Trigger: CGTTCCCTGTCTGTCACCCCACATGAGAGTCCCCAG...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp CATAGTGGTTGCAGGCAGAAGGCTTCACCAAGGCAGTCAGAGGCCATCAAGGCAGGAGATGCATGGCAATaGAGGGACCTGGGAGCTGGG +
Preference number: 2 (lower is better)
Translates to: HSGCRQKASPRQSEAIKAGDAWQ*RDLGAG
Trigger: CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCC...TGCCTTGATGGCCTCTGACTGCCTTGGTGAAGCCTTCTGCCTGCAACCACTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CCA 90 bp CCCCTGGAAAGGTGGCAAGTAGCAGTCTCTCTAGGCCAGCCCTTGCTCCTGCGTGATAGTTCAGGCTGCTaGCCTAAGCCTATGCGTCCA +
Preference number: 2 (lower is better)
Translates to: PLERWQVAVSLGQPLLLRDSSGC*PKPMRP
Trigger: TGGACGCATAGGCTTAGGCCAGCAGCCTGAACTATC...ACGCAGGAGCAAGGGCTGGCCTAGAGAGACTGCTACTTGCCACCTTTCCAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR CAA 90 bp GCTTCACCAAGGCAGTCAGAGGCCATCAAGGCACCAAGGCACCATTaGTCCCTCAGTTACCAGGTCTCCGTTCCTGCTTCCTCTGCTCAG +
Preference number: 2 (lower is better)
Translates to: ASPRQSEAIKAPRHH*SLSYQVSVPASSAQ
Trigger: CTGAGCAGAGGAAGCAGGAACGGAGACCTGGTAACTGAGGGACAAATGGTGCCTTGGTGCCTTGATGGCCTCTGACTGCCTTGGTGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp GGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGGCTGGTGCAAACATTGTGTaGTGGAGTCCGGGCTGGGTT +
Preference number: 2 (lower is better)
Translates to: GPWTGARTVHPIWFCLEAGANIV*WSPGWV
Trigger: AACCCAGCCCGGACTCCAGCACACAATGTTTGCACC...AGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAACAGGGTCCCAGAGCTaGCGCCTCCCCCTGTACAGG +
Preference number: 2 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGTGSQS*RLPLYR
Trigger: CCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGT...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGAGCATCAGGCCCAAGTaGAGGAAACTGCCAGGAGTG +
Preference number: 2 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGSIRPK*RKLPGV
Trigger: CACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCT...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp GGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTGGTCCAGGTAGAGCCTaGTTCTGCCAGTTAGAGAAG +
Preference number: 2 (lower is better)
Translates to: GFAWRLVVVRRCVNSVSAGPGRA*FCQLEK
Trigger: CTTCTCTAACTGGCAGAAGCAGGCTCTACCTGGACC...AGCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp CCGTTCCTGCTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGGTACATCCTATCTGGTTTTaGCTGGAGGCTGGTGGTGGT +
Preference number: 2 (lower is better)
Translates to: PFLLPLLSAWQPGGNLLVHPIWF*LEAGGG
Trigger: ACCACCACCAGCCTCCAGGCAAAACCAGATAGGATG...TACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CCA 90 bp GCAGAGTGTCTACTTAGCACACACAAAGCCTGGGTTGGCTCCCTAGCCCCAAATTGCCAGGAGTGCAGCTaGCTGGAGCCTTTGGGTGGA +
Preference number: 2 (lower is better)
Translates to: AECLLSTHKAWVGSLAPNCQECS*LEPLGG
Trigger: TCCACCCAAAGGCTCCAGCCAGCTGCACTCCTGGCA...ATTTGGGGCTAGGGAGCCAACCCAGGCTTTGTGTGTGCTAAGTAGACACTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR TCA 90 bp CCGTTCCTGCTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGGTAGGCTCACATGAAACCTaGTGTCACCTGTCCCTATGT +
Preference number: 2 (lower is better)
Translates to: PFLLPLLSAWQPGGNLLVGSHET*CHLSLC
Trigger: ACATAGGGACAGGTGACATCAGGTTTCATGTGAGCC...TACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp TTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCCAGCATGATACAGGGTCCCAGAGCTaGCGCCTCCCCCTGTACAGG +
Preference number: 2 (lower is better)
Translates to: LGTQCNLLIPSSYPSQHDTGSQS*RLPLYR
Trigger: CCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGT...ATCATGCTGGGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
3UTR-3UTR GCA 90 bp GGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTGGTAGAGCCTGCTTCTaGCAGTTAGAGAAGCATCAG +
Preference number: 2 (lower is better)
Translates to: GFAWRLVVVRRCVNSVSAGRACF*QLEKHQ
Trigger: CTGATGCTTCTCTAACTGGCAGAAGCAGGCTCTACC...AGCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp GTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGACTCATCCTATCTGGTTTTaGCTGGAGGCTGGTGGTGGT +
Preference number: 2 (lower is better)
Translates to: VESTVGDAWQWRDLGAGTHPIWF*LEAGGG
Trigger: ACCACCACCAGCCTCCAGGCAAAACCAGATAGGATG...AGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp CATAGTGGTTGCAGGCAGAAGGCTTCACCAAGGCAGTCAGAGGCCATCAAGGCACATCCTATCTGGTTTTaGCTGGAGGCTGGTGGTGGT +
Preference number: 2 (lower is better)
Translates to: HSGCRQKASPRQSEAIKAHPIWF*LEAGGG
Trigger: ACCACCACCAGCCTCCAGGCAAAACCAGATAGGATG...TGCCTTGATGGCCTCTGACTGCCTTGGTGAAGCCTTCTGCCTGCAACCACTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CCA 90 bp CATATGTTGCTTCCCTTGGTAACCAGTGAACTTTCTACAGCGCCCGGCTGTGAGCTGGGGACTCTCATGTaGGGTGACAGACAGGGAACG +
Preference number: 2 (lower is better)
Translates to: HMLLPLVTSELSTAPGCELGTLM*GDRQGT
Trigger: CGTTCCCTGTCTGTCACCCCACATGAGAGTCCCCAG...CTCACAGCCGGGCGCTGTAGAAAGTTCACTGGTTACCAAGGGAAGCAACATATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR-3UTR CCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGATGCCAGGAGTGCAGCTaGCTGGAGCCTTTGGGTGGA +
Preference number: 2 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGCQECS*LEPLGG
Trigger: TCCACCCAAAGGCTCCAGCCAGCTGCACTCCTGGCA...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAGGCAATGGAGGGACCTaGGAGCTGGGACTCTCCATC +
Preference number: 2 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGGNGGT*ELGLSI
Trigger: GATGGAGAGTCCCAGCTCCCAGGTCCCTCCATTGCC...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAGGAGATGCATGGCAATaGAGGGACCTGGGAGCTGGG +
Preference number: 2 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGGDAWQ*RDLGAG
Trigger: CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCC...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR TCA 90 bp CAGGGAAGCAGCAGAGGGTGCCCCAATAAATTACATTCTGTAGAGAGCACAGTAAAGCTAGAGGGAGGATaGCCTCCCAGCTGGAGGTCC +
Preference number: 2 (lower is better)
Translates to: QGSSRGCPNKLHSVESTVKLEGG*PPSWRS
Trigger: GGACCTCCAGCTGGGAGGTCATCCTCCCTCTAGCTT...TACTGTGCTCTCTACAGAATGTAATTTATTGGGGCACCCTCTGCTGCTTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR TCA 90 bp GGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGGCTCTTGAGCAAGAGGTTTaGAGCTTAGGGGTTGCAAAG +
Preference number: 2 (lower is better)
Translates to: GPWTGARTVHPIWFCLEALEQEV*SLGVAK
Trigger: CTTTGCAACCCCTAAGCTTCAAACCTCTTGCTCAAG...AGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR TCA 90 bp CATAGTGGTTGCAGGCAGAAGGCTTCACCAAGGCAGTCAGAGGCCATCAAGGCAGGCTCACATGAAACCTaGTGTCACCTGTCCCTATGT +
Preference number: 2 (lower is better)
Translates to: HSGCRQKASPRQSEAIKAGSHET*CHLSLC
Trigger: ACATAGGGACAGGTGACATCAGGTTTCATGTGAGCC...TGCCTTGATGGCCTCTGACTGCCTTGGTGAAGCCTTCTGCCTGCAACCACTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR TCA 90 bp CCCTGTGCAAGCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTGCACACTTCTGCTGGGCTTCCCTaGTGCAGAGGCACCTTGGGT +
Preference number: 2 (lower is better)
Translates to: PCASPSRLLFDLPIKLHTSAGLP*CRGTLG
Trigger: ACCCAAGGTGCCTCTGCATCAGGGAAGCCCAGCAGA...AGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGCTTGCACAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp AGAGAGGAACGGGACTATGGTATTGTCTCTAAGCCCACTCTGGCTCACATGAAAGGAAACTGCCAGGAGTaGAGCTGGCTGGAGCCTTTG +
Preference number: 2 (lower is better)
Translates to: REERDYGIVSKPTLAHMKGNCQE*SWLEPL
Trigger: CAAAGGCTCCAGCCAGCTGCACTCCTGGCAGTTTCC...TTTCATGTGAGCCAGAGTGGGCTTAGAGACAATACCATAGTCCCGTTCCTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp CCCTGTGCAAGCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTGCACACTGGAAACTGCCAGGAGTaGAGCTGGCTGGAGCCTTTG +
Preference number: 2 (lower is better)
Translates to: PCASPSRLLFDLPIKLHTGNCQE*SWLEPL
Trigger: CAAAGGCTCCAGCCAGCTGCACTCCTGGCAGTTTCC...AGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGCTTGCACAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp CAGGGAAGCAGCAGAGGGTGCCCCAATAAATTACATTCTGTAGAGAGCACAGTACCAAGTGCAGGAAACTaGCAGGAGTGCAGCTGGCTG +
Preference number: 2 (lower is better)
Translates to: QGSSRGCPNKLHSVESTVPSAGN*QECSWL
Trigger: CAGCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGG...TACTGTGCTCTCTACAGAATGTAATTTATTGGGGCACCCTCTGCTGCTTCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp CAGGGAAGCAGCAGAGGGTGCCCCAATAAATTACATTCTGTAGAGAGCACAGTAGAGGGACCTGGGAGCTaGGACTCTCCATCCCATCTT +
Preference number: 2 (lower is better)
Translates to: QGSSRGCPNKLHSVESTVEGPGS*DSPSHL
Trigger: AAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTC...TACTGTGCTCTCTACAGAATGTAATTTATTGGGGCACCCTCTGCTGCTTCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp CAGGGAAGCAGCAGAGGGTGCCCCAATAAATTACATTCTGTAGAGAGCACAGTAGGTGCAAACATTGTGTaGTGGAGTCCGGGCTGGGTT +
Preference number: 2 (lower is better)
Translates to: QGSSRGCPNKLHSVESTVGANIV*WSPGWV
Trigger: AACCCAGCCCGGACTCCAGCACACAATGTTTGCACC...TACTGTGCTCTCTACAGAATGTAATTTATTGGGGCACCCTCTGCTGCTTCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAGGTCCAGGTAGAGCCTaGTTCTGCCAGTTAGAGAAG +
Preference number: 2 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGGPGRA*FCQLEK
Trigger: CTTCTCTAACTGGCAGAAGCAGGCTCTACCTGGACC...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAGAGCACAGTAGGAGATaGATGGCAATGGAGGGACCT +
Preference number: 2 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGEHSRR*MAMEGP
Trigger: AGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTC...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp CCCTGTGCAAGCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTGCACACTCCAGGTCTCCGTTCCTaGTTCCTCTGCTCAGTGCTT +
Preference number: 2 (lower is better)
Translates to: PCASPSRLLFDLPIKLHTPGLRS*FLCSVL
Trigger: AAGCACTGAGCAGAGGAAGCAGGAACGGAGACCTGG...AGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGCTTGCACAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp ACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCCCAAGTGCAGGAAACTaGCAGGAGTGCAGCTGGCTG +
Preference number: 2 (lower is better)
Translates to: TIDLGTQCNLLIPSSYPSPSAGN*QECSWL
Trigger: CAGCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGG...GGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
3UTR-3UTR GCA 90 bp CCCTGTGCAAGCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTGCACACTGGTCCAGGTAGAGCCTaGTTCTGCCAGTTAGAGAAG +
Preference number: 2 (lower is better)
Translates to: PCASPSRLLFDLPIKLHTGPGRA*FCQLEK
Trigger: CTTCTCTAACTGGCAGAAGCAGGCTCTACCTGGACC...AGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGCTTGCACAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp CCCTGTGCAAGCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTGCACACTGAGCACAGTAGGAGATaGATGGCAATGGAGGGACCT +
Preference number: 2 (lower is better)
Translates to: PCASPSRLLFDLPIKLHTEHSRR*MAMEGP
Trigger: AGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTC...AGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGCTTGCACAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CCA 90 bp CATAGTGGTTGCAGGCAGAAGGCTTCACCAAGGCAGTCAGAGGCCATCAAGGCAGACCAGCCTTTGCTATaGGACACCTTATTTCAAACA +
Preference number: 2 (lower is better)
Translates to: HSGCRQKASPRQSEAIKADQPLL*DTLFQT
Trigger: TGTTTGAAATAAGGTGTCCCATAGCAAAGGCTGGTC...TGCCTTGATGGCCTCTGACTGCCTTGGTGAAGCCTTCTGCCTGCAACCACTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp ACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCAGCATCAGGCCCAAGTaGAGGAAACTGCCAGGAGTG +
Preference number: 2 (lower is better)
Translates to: TIDLGTQCNLLIPSSYPSSIRPK*RKLPGV
Trigger: CACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCT...GGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
3UTR-3UTR GCA 90 bp TTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCCAGCATGATGGTAGAGCCTGCTTCTaGCAGTTAGAGAAGCATCAG +
Preference number: 2 (lower is better)
Translates to: LGTQCNLLIPSSYPSQHDGRACF*QLEKHQ
Trigger: CTGATGCTTCTCTAACTGGCAGAAGCAGGCTCTACC...ATCATGCTGGGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
3UTR-3UTR GCA 90 bp AATATGCGATATATGCCTGTGATCCCAGCACTCGGAAAGGCAAATGCTGGATCAACAGTGGACAGGGAGTaGCAGGGTCTGGGTAAAAAC +
Preference number: 2 (lower is better)
Translates to: NMRYMPVIPALGKANAGSTVDRE*QGLGKN
Trigger: GTTTTTACCCAGACCCTGGCACTCCCTGTCCACTGT...TGATCCAGCATTTGCCTTTCCGAGTGCTGGGATCACAGGCATATATCGCATATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CCA 90 bp ATTATATACACGTACATATGTGGACAGACAGGACTGGAAGTGCAATTAGGTAGGGGAGATGCATGGCAATaGAGGGACCTGGGAGCTGGG +
Preference number: 2 (lower is better)
Translates to: IIYTYICGQTGLEVQLGRGDAWQ*RDLGAG
Trigger: CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCC...CCTACCTAATTGCACTTCCAGTCCTGTCTGTCCACATATGTACGTGTATATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp CATATGTTGCTTCCCTTGGTAACCAGTGAACTTTCTACAGCGCCCGGCTGTGAGCAGTCCTGCTTCCCCTaGAAAAATGGCTATATCTCT +
Preference number: 2 (lower is better)
Translates to: HMLLPLVTSELSTAPGCEQSCFP*KNGYIS
Trigger: AGAGATATAGCCATTTTTCCAGGGGAAGCAGGACTG...CTCACAGCCGGGCGCTGTAGAAAGTTCACTGGTTACCAAGGGAAGCAACATATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR-3UTR TCA 90 bp TTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCCAGCATGATCTTGAGCAAGAGGTTTaGAGCTTAGGGGTTGCAAAG +
Preference number: 2 (lower is better)
Translates to: LGTQCNLLIPSSYPSQHDLEQEV*SLGVAK
Trigger: CTTTGCAACCCCTAAGCTTCAAACCTCTTGCTCAAG...ATCATGCTGGGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
3UTR-3UTR TCA 90 bp AGAGAGGAACGGGACTATGGTATTGTCTCTAAGCCCACTCTGGCTCACATGAAAGGTACAGTGCTTGTCTaGTATGCACAGGCATGGATA +
Preference number: 2 (lower is better)
Translates to: REERDYGIVSKPTLAHMKGTVLV*YAQAWI
Trigger: TATCCATGCCTGTGCATATCAGACAAGCACTGTACC...TTTCATGTGAGCCAGAGTGGGCTTAGAGACAATACCATAGTCCCGTTCCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR GCA 90 bp TCCAGTCAATCTGATCATATGTTGCTTCCCTTGGTAACCAGTGAACTTTCTACACGTTCCTGCTTCCTCTaGTCAGTGCTTGGCAGCCAG +
Preference number: 2 (lower is better)
Translates to: SSQSDHMLLPLVTSELSTRSCFL*SVLGSQ
Trigger: CTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACG...TGTAGAAAGTTCACTGGTTACCAAGGGAAGCAACATATGATCAGATTGACTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR-3UTR CCA 90 bp TGCACAGGCATGGATAGAAACAATAGATTTAGGGACCCAGTGCAACCTTTTAATGAGGGACCTGGGAGCTaGGACTCTCCATCCCATCTT +
Preference number: 2 (lower is better)
Translates to: CTGMDRNNRFRDPVQPFNEGPGS*DSPSHL
Trigger: AAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTC...ATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGTTTCTATCCATGCCTGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
3UTR-3UTR TCA 90 bp TCCAGTCAATCTGATCATATGTTGCTTCCCTTGGTAACCAGTGAACTTTCTACAAGGCAGGAGGATTTCTaGGTTCTAGGCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: SSQSDHMLLPLVTSELSTRQEDF*VLGQPG
Trigger: ACCAGGCTGGCCTAGAACTCAGAAATCCTCCTGCCT...TGTAGAAAGTTCACTGGTTACCAAGGGAAGCAACATATGATCAGATTGACTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR-3UTR GCA 90 bp ATTATATACACGTACATATGTGGACAGACAGGACTGGAAGTGCAATTAGGTAGGAGCATCAGGCCCAAGTaGAGGAAACTGCCAGGAGTG +
Preference number: 2 (lower is better)
Translates to: IIYTYICGQTGLEVQLGRSIRPK*RKLPGV
Trigger: CACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCT...CCTACCTAATTGCACTTCCAGTCCTGTCTGTCCACATATGTACGTGTATATAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR TCA 90 bp ACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCCTTGAGCAAGAGGTTTaGAGCTTAGGGGTTGCAAAG +
Preference number: 2 (lower is better)
Translates to: TIDLGTQCNLLIPSSYPSLEQEV*SLGVAK
Trigger: CTTTGCAACCCCTAAGCTTCAAACCTCTTGCTCAAG...GGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
3UTR-3UTR GCA 90 bp ATTATATACACGTACATATGTGGACAGACAGGACTGGAAGTGCAATTAGGTAGGGGTCCAGGTAGAGCCTaGTTCTGCCAGTTAGAGAAG +
Preference number: 2 (lower is better)
Translates to: IIYTYICGQTGLEVQLGRGPGRA*FCQLEK
Trigger: CTTCTCTAACTGGCAGAAGCAGGCTCTACCTGGACC...CCTACCTAATTGCACTTCCAGTCCTGTCTGTCCACATATGTACGTGTATATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp ATTATATACACGTACATATGTGGACAGACAGGACTGGAAGTGCAATTAGGTAGGCATCCTATCTGGTTTTaGCTGGAGGCTGGTGGTGGT +
Preference number: 2 (lower is better)
Translates to: IIYTYICGQTGLEVQLGRHPIWF*LEAGGG
Trigger: ACCACCACCAGCCTCCAGGCAAAACCAGATAGGATG...CCTACCTAATTGCACTTCCAGTCCTGTCTGTCCACATATGTACGTGTATATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp AGAGAGGAACGGGACTATGGTATTGTCTCTAAGCCCACTCTGGCTCACATGAAAGATTTAGGGACCCAGTaGAACCTTTTAATTCCAAGC +
Preference number: 2 (lower is better)
Translates to: REERDYGIVSKPTLAHMKDLGTQ*NLLIPS
Trigger: GCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATC...TTTCATGTGAGCCAGAGTGGGCTTAGAGACAATACCATAGTCCCGTTCCTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAGCTTTGAATAAGTCTTaGGTCTTGAGCAAGAGGTTT +
Preference number: 2 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGALNKS*VLSKRF
Trigger: AAACCTCTTGCTCAAGACCCAAGACTTATTCAAAGC...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CCA 90 bp TTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCCAGCATGATATACACGTACATATGTaGACAGACAGGACTGGAAGT +
Preference number: 2 (lower is better)
Translates to: LGTQCNLLIPSSYPSQHDIHVHM*TDRTGS
Trigger: ACTTCCAGTCCTGTCTGTCCACATATGTACGTGTAT...ATCATGCTGGGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
3UTR-3UTR GCA 90 bp ATTATATACACGTACATATGTGGACAGACAGGACTGGAAGTGCAATTAGGTAGGGGTAGAGCCTGCTTCTaGCAGTTAGAGAAGCATCAG +
Preference number: 2 (lower is better)
Translates to: IIYTYICGQTGLEVQLGRGRACF*QLEKHQ
Trigger: CTGATGCTTCTCTAACTGGCAGAAGCAGGCTCTACC...CCTACCTAATTGCACTTCCAGTCCTGTCTGTCCACATATGTACGTGTATATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR GCA 90 bp AATATGCGATATATGCCTGTGATCCCAGCACTCGGAAAGGCAAATGCTGGATCAGATTTAGGGACCCAGTaGAACCTTTTAATTCCAAGC +
Preference number: 2 (lower is better)
Translates to: NMRYMPVIPALGKANAGSDLGTQ*NLLIPS
Trigger: GCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATC...TGATCCAGCATTTGCCTTTCCGAGTGCTGGGATCACAGGCATATATCGCATATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CCA 90 bp AATATGCGATATATGCCTGTGATCCCAGCACTCGGAAAGGCAAATGCTGGATCAGCTTTGAATAAGTCTTaGGTCTTGAGCAAGAGGTTT +
Preference number: 2 (lower is better)
Translates to: NMRYMPVIPALGKANAGSALNKS*VLSKRF
Trigger: AAACCTCTTGCTCAAGACCCAAGACTTATTCAAAGC...TGATCCAGCATTTGCCTTTCCGAGTGCTGGGATCACAGGCATATATCGCATATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CCA 90 bp TCAAAATTTGTCCTACCACAAACATTTCCAGTCAATCTGATCATATGTTGCTTCGATAGTTCAGGCTGCTaGCCTAAGCCTATGCGTCCA +
Preference number: 2 (lower is better)
Translates to: SKFVLPQTFPVNLIICCFDSSGC*PKPMRP
Trigger: TGGACGCATAGGCTTAGGCCAGCAGCCTGAACTATC...GAAGCAACATATGATCAGATTGACTGGAAATGTTTGTGGTAGGACAAATTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR CAA 90 bp GTCTTCAGCTGTAAACTCCATTCCAATGGTAAGAAAATCATTGTTTaGAATGGTTCTCATCTATTTGCTTTGGGGCCAGCTGGTCCTCTT +
Preference number: 2 (lower is better)
Translates to: VFSCKLHSNGKKIIV*NGSHLFALGPAGPL
Trigger: AAGAGGACCAGCTGGCCCCAAAGCAAATAGATGAGAACCATTCAAAACAATGATTTTCTTACCATTGGAATGGAGTTTACAGCTGAAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR TCA 90 bp TCAAAATTTGTCCTACCACAAACATTTCCAGTCAATCTGATCATATGTTGCTTCCACATATTGGTTTTATaGAGCCTTGGGTTTCAGGTA +
Preference number: 2 (lower is better)
Translates to: SKFVLPQTFPVNLIICCFHILVL*SLGFQV
Trigger: TACCTGAAACCCAAGGCTTCATAAAACCAATATGTG...GAAGCAACATATGATCAGATTGACTGGAAATGTTTGTGGTAGGACAAATTTTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR CCA 72 bp GCCCAAGTGCAGGAAACTGCCAGGAGTGCAGCTGGCTaGAGCCTTTGGGTGGACAGGCACAGGGTCCCAGAG +
Preference number: 3 (lower is better)
Translates to: AQVQETARSAAG*SLWVDRHRVPE
Trigger: CTCTGGGACCCTGTGCCTGTCCACCCAAAGGCTCCAGCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR TCA 72 bp CCCTGGCCCATCGTGGGGAAGGAAGTCCACGCCTCGTaGCTCTGGGACTGTGCACTTCTTGGCTCTCTCCGT +
Preference number: 3 (lower is better)
Translates to: PWPIVGKEVHAS*LWDCALLGSLR
Trigger: ACGGAGAGAGCCAAGAAGTGCACAGTCCCAGAGTCACGAGGCGTGGACTTCCTTCCCCACGATGGGCCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 72 bp AGGAATGGAGCCCAACGTTTCTGCCCTGCCTCCCGCTaGTCCCAGCCAGCAGAGGAAGAGGACACTGTAGGG +
Preference number: 3 (lower is better)
Translates to: RNGAQRFCPASR*SQPAEEEDTVG
Trigger: CCCTACAGTGTCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGGGCAGAAACGTTGGGCTCCATTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 72 bp TCTCTCCGTGAGGAATGGAGCCCAACGTTTCTGCCCTaGCTCCCGCTGCTCCCAGCCAGCAGAGGAAGAGGA +
Preference number: 3 (lower is better)
Translates to: SLREEWSPTFLP*LPLLPASRGRG
Trigger: TCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGGGCAGAAACGTTGGGCTCCATTCCTCACGGAGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 72 bp CTCAGCCCCACCTTGGGCACGCAGCTCCATAGTGGTTaGAGGCAGAAGGCTTCACCAAGGCAGTCAGAGGCC +
Preference number: 3 (lower is better)
Translates to: LSPTLGTQLHSG*RQKASPRQSEA
Trigger: GGCCTCTGACTGCCTTGGTGAAGCCTTCTGCCTGCAACCACTATGGAGCTGCGTGCCCAAGGTGGGGCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR GCA 72 bp GAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTaGAGCTGGCTGGAGCCTTTGGGTGGACAGGCACAG +
Preference number: 3 (lower is better)
Translates to: EASGPSAGNCQE*SWLEPLGGQAQ
Trigger: CTGTGCCTGTCCACCCAAAGGCTCCAGCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 72 bp CTGGGCTCGGTGGTCCCTGGACAGGTGCTAGAACGGTaGATCCTATCTGGTTTTGCCTGGAGGCTGGTGGTG +
Preference number: 3 (lower is better)
Translates to: LGSVVPGQVLER*ILSGFAWRLVV
Trigger: CACCACCAGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACCACCGAGCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR CCA 72 bp TGGGACTGTGCACTTCTTGGCTCTCTCCGTGAGGAATaGAGCCCAACGTTTCTGCCCTGCCTCCCGCTGCTC +
Preference number: 3 (lower is better)
Translates to: WDCALLGSLREE*SPTFLPCLPLL
Trigger: GAGCAGCGGGAGGCAGGGCAGAAACGTTGGGCTCCATTCCTCACGGAGAGAGCCAAGAAGTGCACAGTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR TCA 72 bp GTGACTCTGGGACTGTGCACTTCTTGGCTCTCTCCGTaGGGAATGGAGCCCAACGTTTCTGCCCTGCCTCCC +
Preference number: 3 (lower is better)
Translates to: VTLGLCTSWLSP*GMEPNVSALPP
Trigger: GGGAGGCAGGGCAGAAACGTTGGGCTCCATTCCTCACGGAGAGAGCCAAGAAGTGCACAGTCCCAGAGTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR TCA 72 bp GGTAACCTCCTGGTAACGTTTTCTGCTGGGCTTCCCTaGTGCAGAGGCACCTTGGGTCCTAGGGAGGCCGGT +
Preference number: 3 (lower is better)
Translates to: GNLLVTFSAGLP*CRGTLGPREAG
Trigger: ACCGGCCTCCCTAGGACCCAAGGTGCCTCTGCATCAGGGAAGCCCAGCAGAAAACGTTACCAGGAGGTTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR CCA 72 bp CCCGCTAAGCCCCCTTCGTTTCTCCTCACTGTCTTCTaGGGACTCTCATGTGGGGTGACAGACAGGGAACGG +
Preference number: 3 (lower is better)
Translates to: PAKPPSFLLTVF*GLSCGVTDRER
Trigger: CCGTTCCCTGTCTGTCACCCCACATGAGAGTCCCCAGAAGACAGTGAGGAGAAACGAAGGGGGCTTAGCGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CAA 90 bp GGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTaGTGTGAACAGCGTCTCTGC +
Preference number: 3 (lower is better)
Translates to: GPWTGARTVHPIWFCLEAGGGEA*CEQRLC
Trigger: GCAGAGACGCTGTTCACACAACGCCTCACCACCACC...AGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CAA 90 bp CCGTTCCTGCTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGGTAGGGACTGTGCACTTCTaGGCTCTCTCCGTGAGGAAT +
Preference number: 3 (lower is better)
Translates to: PFLLPLLSAWQPGGNLLVGTVHF*ALSVRN
Trigger: ATTCCTCACGGAGAGAGCCAAGAAGTGCACAGTCCC...TACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CAA 90 bp GGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTGGGACTGTGCACTTCTaGGCTCTCTCCGTGAGGAAT +
Preference number: 3 (lower is better)
Translates to: GFAWRLVVVRRCVNSVSAGTVHF*ALSVRN
Trigger: ATTCCTCACGGAGAGAGCCAAGAAGTGCACAGTCCC...AGCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 72 bp CCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTaGCAGGAGTGCAGCTGGCTGGAGCCTTTGGGTGGA +
Preference number: 3 (lower is better)
Translates to: PVREASGPSAGN*QECSWLEPLGG
Trigger: TCCACCCAAAGGCTCCAGCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 72 bp GACCTCCCAGCTGGAGGTCCAGGTAGAGCCTGCTTCTaGCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAA +
Preference number: 3 (lower is better)
Translates to: DLPAGGPGRACF*QLEKHQAQVQE
Trigger: TTCCTGCACTTGGGCCTGATGCTTCTCTAACTGGCAGAAGCAGGCTCTACCTGGACCTCCAGCTGGGAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 72 bp TGGGCAGCTGGAGATGTAGCTGGCTCTGCAGTAGAGTaGTTGCCTAGCAGGCCCAAGACCCTGGCTTTGATC +
Preference number: 3 (lower is better)
Translates to: WAAGDVAGSAVE*LPSRPKTLALI
Trigger: GATCAAAGCCAGGGTCTTGGGCCTGCTAGGCAAGCACTCTACTGCAGAGCCAGCTACATCTCCAGCTGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR CCA 72 bp ATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTaGACAGGTGCTAGAACGGTGCATCCTATCTGGTTT +
Preference number: 3 (lower is better)
Translates to: ILGRLRPGLGGP*TGARTVHPIWF
Trigger: AAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR CCA 72 bp CGTTTTCTGCTGGGCTTCCCTGATGCAGAGGCACCTTaGGTCCTAGGGAGGCCGGTGTGTTTGAGGTCATCT +
Preference number: 3 (lower is better)
Translates to: RFLLGFPDAEAP*VLGRPVCLRSS
Trigger: AGATGACCTCAAACACACCGGCCTCCCTAGGACCCAAGGTGCCTCTGCATCAGGGAAGCCCAGCAGAAAACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CAA 90 bp GGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGGCTGGGACTGTGCACTTCTaGGCTCTCTCCGTGAGGAAT +
Preference number: 3 (lower is better)
Translates to: GPWTGARTVHPIWFCLEAGTVHF*ALSVRN
Trigger: ATTCCTCACGGAGAGAGCCAAGAAGTGCACAGTCCC...AGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 72 bp CCTCCCAGCATGATCACACACACAGTGGACAGGGAGTaGCAGGGTCTGGGTAAAAACGAAACCCAGACCTGG +
Preference number: 3 (lower is better)
Translates to: PPSMITHTVDRE*QGLGKNETQTW
Trigger: CCAGGTCTGGGTTTCGTTTTTACCCAGACCCTGGCACTCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 72 bp GCACCATTTGTCCCTCAGTTACCAGGTCTCCGTTCCTaGTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTA +
Preference number: 3 (lower is better)
Translates to: APFVPQLPGLRS*FLCSVLGSQVV
Trigger: TACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGGAGACCTGGTAACTGAGGGACAAATGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR CCA 72 bp CAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTaGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGC +
Preference number: 3 (lower is better)
Translates to: QVLERCILSGFA*RLVVVRRCVNS
Trigger: GCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CAA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGAATAAGTCTTGGGTCTaGAGCAAGAGGTTTGAAGCT +
Preference number: 3 (lower is better)
Translates to: WDSPSHLREAEAWARWSLNKSWV*SKRFEA
Trigger: AGCTTCAAACCTCTTGCTCAAGACCCAAGACTTATT...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR GCA 72 bp TGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTaGCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAA +
Preference number: 3 (lower is better)
Translates to: WTGARTVHPIWF*LEAGGGEALCE
Trigger: TTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR CCA 72 bp CATTCTGTAGAGAGCACAGTAGGAGATGCATGGCAATaGAGGGACCTGGGAGCTGGGACTCTCCATCCCATC +
Preference number: 3 (lower is better)
Translates to: HSVESTVGDAWQ*RDLGAGTLHPI
Trigger: GATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR CCA 72 bp ACCAGGTCTCCGTTCCTGCTTCCTCTGCTCAGTGCTTaGCAGCCAGGTGGTAACCTCCTGGTAACGTTTTCT +
Preference number: 3 (lower is better)
Translates to: TRSPFLLPLLSA*QPGGNLLVTFS
Trigger: AGAAAACGTTACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGGAGACCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR TCA 72 bp CACACACAAAGCCTGGGTTGGCTCCCTAGCCCCAAATaGAGCAGGCGTAATGGTGTCCACCTGTCATCTCAA +
Preference number: 3 (lower is better)
Translates to: HTQSLGWLPSPK*SRRNGVHLSSQ
Trigger: TTGAGATGACAGGTGGACACCATTACGCCTGCTTCATTTGGGGCTAGGGAGCCAACCCAGGCTTTGTGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR GCA 72 bp GCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTaGACACTCAGCCCCACCTTGGGCACGCAGCTCCAT +
Preference number: 3 (lower is better)
Translates to: AHPVFFLIFQSN*TLSPTLGTQLH
Trigger: ATGGAGCTGCGTGCCCAAGGTGGGGCTGAGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR GCA 72 bp CCTGCTTCCCCTGGAAAAATGGCTATATCTCTCCAGTaGTGGGCAGCTGGAGATGTAGCTGGCTCTGCAGTA +
Preference number: 3 (lower is better)
Translates to: PASPGKMAISLQ*WAAGDVAGSAV
Trigger: TACTGCAGAGCCAGCTACATCTCCAGCTGCCCAGCACTGGAGAGATATAGCCATTTTTCCAGGGGAAGCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR CCA 72 bp GCTTCCCCTGGAAAAATGGCTATATCTCTCCAGTGCTaGGCAGCTGGAGATGTAGCTGGCTCTGCAGTAGAG +
Preference number: 3 (lower is better)
Translates to: ASPGKMAISLQC*AAGDVAGSAVE
Trigger: CTCTACTGCAGAGCCAGCTACATCTCCAGCTGCCCAGCACTGGAGAGATATAGCCATTTTTCCAGGGGAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR CCA 72 bp CATATGCGGAACCCAGTCCTGCTTCCCCTGGAAAAATaGCTATATCTCTCCAGTGCTGGGCAGCTGGAGATG +
Preference number: 3 (lower is better)
Translates to: HMRNPVLLPLEK*LYLSSAGQLEM
Trigger: CATCTCCAGCTGCCCAGCACTGGAGAGATATAGCCATTTTTCCAGGGGAAGCAGGACTGGGTTCCGCATATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR-3UTR CAA 90 bp CCCCTGGAAAGGTGGCAAGTAGCAGTCTCTCTAGGCCAGCCCTTGCTCCTGCGTAATAAGTCTTGGGTCTaGAGCAAGAGGTTTGAAGCT +
Preference number: 3 (lower is better)
Translates to: PLERWQVAVSLGQPLLLRNKSWV*SKRFEA
Trigger: AGCTTCAAACCTCTTGCTCAAGACCCAAGACTTATT...ACGCAGGAGCAAGGGCTGGCCTAGAGAGACTGCTACTTGCCACCTTTCCAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR CCA 72 bp TATGCCTGTGATCCCAGCACTCGGAAAGGCAAATGCTaGATCAGGGGTTCAAGACCAGCCTTTGCTATGGGA +
Preference number: 3 (lower is better)
Translates to: YACDPSTRKGKC*IRGSRPAFAMG
Trigger: TCCCATAGCAAAGGCTGGTCTTGAACCCCTGATCCAGCATTTGCCTTTCCGAGTGCTGGGATCACAGGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR CCA 72 bp TTTGAATGGTTCTCATCTATTTGCTTTGGGGCCAGCTaGTCCTCTTCCCCTGTGCAAGCCCATCCCGTCTTC +
Preference number: 3 (lower is better)
Translates to: FEWFSSICFGAS*SSSPVQAHPVF
Trigger: GAAGACGGGATGGGCTTGCACAGGGGAAGAGGACCAGCTGGCCCCAAAGCAAATAGATGAGAACCATTCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CAA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAGGGACTGTGCACTTCTaGGCTCTCTCCGTGAGGAAT +
Preference number: 3 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGGTVHF*ALSVRN
Trigger: ATTCCTCACGGAGAGAGCCAAGAAGTGCACAGTCCC...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CAA 90 bp GCAGAGTGTCTACTTAGCACACACAAAGCCTGGGTTGGCTCCCTAGCCCCAAATTCTCATCTATTTGCTTaGGGGCCAGCTGGTCCTCTT +
Preference number: 3 (lower is better)
Translates to: AECLLSTHKAWVGSLAPNSHLFA*GPAGPL
Trigger: AAGAGGACCAGCTGGCCCCAAAGCAAATAGATGAGA...ATTTGGGGCTAGGGAGCCAACCCAGGCTTTGTGTGTGCTAAGTAGACACTCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CAA 90 bp AGAGAGGAACGGGACTATGGTATTGTCTCTAAGCCCACTCTGGCTCACATGAAAGGGACTGTGCACTTCTaGGCTCTCTCCGTGAGGAAT +
Preference number: 3 (lower is better)
Translates to: REERDYGIVSKPTLAHMKGTVHF*ALSVRN
Trigger: ATTCCTCACGGAGAGAGCCAAGAAGTGCACAGTCCC...TTTCATGTGAGCCAGAGTGGGCTTAGAGACAATACCATAGTCCCGTTCCTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR TCA 72 bp GGTCCTAGGGAGGCCGGTGTGTTTGAGGTCATCTTCTaGGGCTCTGTCAAGCTCTCTCTAGCTACAAAAGAT +
Preference number: 3 (lower is better)
Translates to: GPREAGVFEVIF*GSVKLSLATKD
Trigger: ATCTTTTGTAGCTAGAGAGAGCTTGACAGAGCCTCAGAAGATGACCTCAAACACACCGGCCTCCCTAGGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR GCA 72 bp ATATATGCCTGTGATCCCAGCACTCGGAAAGGCAAATaGTGGATCAGGGGTTCAAGACCAGCCTTTGCTATG +
Preference number: 3 (lower is better)
Translates to: IYACDPSTRKGK*WIRGSRPAFAM
Trigger: CATAGCAAAGGCTGGTCTTGAACCCCTGATCCAGCATTTGCCTTTCCGAGTGCTGGGATCACAGGCATATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CAA 90 bp ATTATATACACGTACATATGTGGACAGACAGGACTGGAAGTGCAATTAGGTAGGGGTGGTGGTGAGGCGTaGTGTGAACAGCGTCTCTGC +
Preference number: 3 (lower is better)
Translates to: IIYTYICGQTGLEVQLGRGGGEA*CEQRLC
Trigger: GCAGAGACGCTGTTCACACAACGCCTCACCACCACC...CCTACCTAATTGCACTTCCAGTCCTGTCTGTCCACATATGTACGTGTATATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR CCA 72 bp TGTATTCCAGCACTTGTGAGGCAGAGGCAAGGCGGATaGGAAGTTCAACCTCAGATACAAGTAAGTTTGAGG +
Preference number: 3 (lower is better)
Translates to: CIPALVRQRQGG*EVQPQIQVSLR
Trigger: CCTCAAACTTACTTGTATCTGAGGTTGAACTTCCCATCCGCCTTGCCTCTGCCTCACAAGTGCTGGAATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR CCA 72 bp TGGACTCCCAATCTTCCTTTCCTTAGTGTTGGGATCTaGCATATGCCTGGTGTGTCCACTGCTAACAAGAGA +
Preference number: 3 (lower is better)
Translates to: WTPNLPFLSVGI*HMPGVSTANKR
Trigger: TCTCTTGTTAGCAGTGGACACACCAGGCATATGCCAGATCCCAACACTAAGGAAAGGAAGATTGGGAGTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR-3UTR CAA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAAATAAGTCTTGGGTCTaGAGCAAGAGGTTTGAAGCT +
Preference number: 3 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGNKSWV*SKRFEA
Trigger: AGCTTCAAACCTCTTGCTCAAGACCCAAGACTTATT...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR-3UTR CAA 90 bp AGAGAGGAACGGGACTATGGTATTGTCTCTAAGCCCACTCTGGCTCACATGAAAAATAAGTCTTGGGTCTaGAGCAAGAGGTTTGAAGCT +
Preference number: 3 (lower is better)
Translates to: REERDYGIVSKPTLAHMKNKSWV*SKRFEA
Trigger: AGCTTCAAACCTCTTGCTCAAGACCCAAGACTTATT...TTTCATGTGAGCCAGAGTGGGCTTAGAGACAATACCATAGTCCCGTTCCTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR-3UTR CAA 90 bp TTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCCAGCATGATAATAAGTCTTGGGTCTaGAGCAAGAGGTTTGAAGCT +
Preference number: 3 (lower is better)
Translates to: LGTQCNLLIPSSYPSQHDNKSWV*SKRFEA
Trigger: AGCTTCAAACCTCTTGCTCAAGACCCAAGACTTATT...ATCATGCTGGGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
3UTR GCA 72 bp CAGGCATGGATAGAAACAATAGATTTAGGGACCCAGTaGAACCTTTTAATTCCAAGCAGTTACCCCTCCCAG +
Preference number: 3 (lower is better)
Translates to: QAWIETIDLGTQ*NLLIPSSYPSQ
Trigger: CTGGGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGTTTCTATCCATGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
3UTR CCA 72 bp CACACACACACCACACATATTGGTTTTATGAAGCCTTaGGTTTCAGGTAAAACGCTCTCTCGTTTGTTGGGT +
Preference number: 3 (lower is better)
Translates to: HTHTTHIGFMKP*VSGKTLSRLLG
Trigger: ACCCAACAAACGAGAGAGCGTTTTACCTGAAACCCAAGGCTTCATAAAACCAATATGTGTGGTGTGTGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR TCA 72 bp CTAAGGCTTTGTTTTAGGGGGTCAAGAGCCTCACTTTaGAGGAATCTAAATTCTCAGGAGCTCCAAATCCTT +
Preference number: 3 (lower is better)
Translates to: LRLCFRGSRASL*RNLNSQELQIL
Trigger: AAGGATTTGGAGCTCCTGAGAATTTAGATTCCTTCAAAGTGAGGCTCTTGACCCCCTAAAACAAAGCCTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR GCA 72 bp AGGCAAATGCTGGATCAGGGGTTCAAGACCAGCCTTTaGTATGGGACACCTTATTTCAAACAAAACAACAAA +
Preference number: 3 (lower is better)
Translates to: RQMLDQGFKTSL*YGTPYFKQNNK
Trigger: TTTGTTGTTTTGTTTGAAATAAGGTGTCCCATAGCAAAGGCTGGTCTTGAACCCCTGATCCAGCATTTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR TCA 72 bp AGAGGTAAGACAACTGGTTGTGGTACAGTGCTTGTCTaGTATGCACAGGCATGGATAGAAACAATAGATTTA +
Preference number: 3 (lower is better)
Translates to: RGKTTGCGTVLV*YAQAWIETIDL
Trigger: TAAATCTATTGTTTCTATCCATGCCTGTGCATATCAGACAAGCACTGTACCACAACCAGTTGTCTTACCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp GGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCCCCGCTTCTTGGCTGGCTGGTTaGGGTCAGGGGGCTGCGCTG +
Preference number: 4 (lower is better)
Translates to: GPRAAASPCTGQQTDLPASWLAG*GQGAAL
Trigger: CAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGA...AGCGGGGAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCCCCGCTTGGCCCTCTCCGTTCTaGAGACCTGGGCTCCCAGCC +
Preference number: 4 (lower is better)
Translates to: GPRAAASPCTGQQTDLPAWPSPF*RPGLPA
Trigger: GGCTGGGAGCCCAGGTCTCCAGAACGGAGAGGGCCA...AGCGGGGAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022695.16
CDS-3UTR CCA 90 bp GGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCCCCGCTTCTATCTTGGCTGGCTaGTTGGGGTCAGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GPRAAASPCTGQQTDLPASILAG*LGSGGC
Trigger: GCAGCCCCCTGACCCCAACCAGCCAGCCAAGATAGA...AGCGGGGAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp GGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCCCCGCTGTCAGGGGGCTGCGCTaGAGGAAACTTGGAGGATTC +
Preference number: 4 (lower is better)
Translates to: GPRAAASPCTGQQTDLPAVRGLR*RKLGGF
Trigger: GAATCCTCCAAGTTTCCTGCAGCGCAGCCCCCTGAC...AGCGGGGAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GAGTGCAGCTGGCTGGAGCCTTTGGGTGGACAGGCACAGGGTCCCAGAGCTGCCCGGGTAGTCTCAGGGTaGTGGAAGTGGGGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: ECSWLEPLGGQAQGPRAARVVSG*WKWGRL
Trigger: CAGCCTGCCCCACTTCCACCACCCTGAGACTACCCG...GGCAGCTCTGGGACCCTGTGCCTGTCCACCCAAAGGCTCCAGCCAGCTGCACTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GAGTGCAGCTGGCTGGAGCCTTTGGGTGGACAGGCACAGGGTCCCAGAGCTGCCTCCGTTCTGCAGGCCTaGGCTCCCAGCCTCACTTCC +
Preference number: 4 (lower is better)
Translates to: ECSWLEPLGGQAQGPRAASVLQA*APSLTS
Trigger: GGAAGTGAGGCTGGGAGCCCAGGCCTGCAGAACGGA...GGCAGCTCTGGGACCCTGTGCCTGTCCACCCAAAGGCTCCAGCCAGCTGCACTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022694.17
ENSMUST00000228295.2
CDS-3UTR GCA 90 bp GAGTGCAGCTGGCTGGAGCCTTTGGGTGGACAGGCACAGGGTCCCAGAGCTGCCTTGGGGTCAGGGGGCTaGGCTGCAGGAAACTTGGAG +
Preference number: 4 (lower is better)
Translates to: ECSWLEPLGGQAQGPRAALGSGG*AAGNLE
Trigger: CTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAA...GGCAGCTCTGGGACCCTGTGCCTGTCCACCCAAAGGCTCCAGCCAGCTGCACTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCCCCGCTAGCACTCCCGGCTTCTaGGCAGCTCTACATGTTCCA +
Preference number: 4 (lower is better)
Translates to: GPRAAASPCTGQQTDLPASTPGF*AALHVP
Trigger: TGGAACATGTAGAGCTGCCCAGAAGCCGGGAGTGCT...AGCGGGGAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GAGTGCAGCTGGCTGGAGCCTTTGGGTGGACAGGCACAGGGTCCCAGAGCTGCCGTAGTCTCAGGGTGGTaGAAGTGGGGCAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: ECSWLEPLGGQAQGPRAAVVSGW*KWGRLV
Trigger: GACCAGCCTGCCCCACTTCCACCACCCTGAGACTAC...GGCAGCTCTGGGACCCTGTGCCTGTCCACCCAAAGGCTCCAGCCAGCTGCACTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp AGGGAAATGGTAAGGCCCCCTGGCCCATCGTGGGGAAGGAAGTCCACGCCTCGTTCTTGGCTGGCTGGTTaGGGTCAGGGGGCTGCGCTG +
Preference number: 4 (lower is better)
Translates to: REMVRPPGPSWGRKSTPRSWLAG*GQGAAL
Trigger: CAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGA...ACGAGGCGTGGACTTCCTTCCCCACGATGGGCCAGGGGGCCTTACCATTTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp GCACAGGGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCCACTTCCCGATGGGCTaGATTCTGTGGACTGTAGCC +
Preference number: 4 (lower is better)
Translates to: AQGPRAAASPCTGQQTDLHFPMG*ILWTVA
Trigger: GGCTACAGTCCACAGAATTCAGCCCATCGGGAAGTG...GAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GCACAGGGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCAGCACTCCCGGCTTCTaGGCAGCTCTACATGTTCCA +
Preference number: 4 (lower is better)
Translates to: AQGPRAAASPCTGQQTDLSTPGF*AALHVP
Trigger: TGGAACATGTAGAGCTGCCCAGAAGCCGGGAGTGCT...GAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CCTGCCTCCCGCTGCTCCCAGCCAGCAGAGGAAGAGGACACTGTAGGGAAGGGTTCCTGGGGGTCCCTGTaGTCCTTGGGGTTGAAGCCT +
Preference number: 4 (lower is better)
Translates to: PASRCSQPAEEEDTVGKGSWGSL*SLGLKP
Trigger: AGGCTTCAACCCCAAGGACCACAGGGACCCCCAGGA...ACCCTTCCCTACAGTGTCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGTCCTGGGGGTCCCTGTaGTCCTTGGGGTTGAAGCCT +
Preference number: 4 (lower is better)
Translates to: WDSPSHLREAEAWARWSLSWGSL*SLGLKP
Trigger: AGGCTTCAACCCCAAGGACCACAGGGACCCCCAGGA...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp AGGGAAATGGTAAGGCCCCCTGGCCCATCGTGGGGAAGGAAGTCCACGCCTCGTCGGGTAGTCTCAGGGTaGTGGAAGTGGGGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: REMVRPPGPSWGRKSTPRRVVSG*WKWGRL
Trigger: CAGCCTGCCCCACTTCCACCACCCTGAGACTACCCG...ACGAGGCGTGGACTTCCTTCCCCACGATGGGCCAGGGGGCCTTACCATTTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGTCTATCTTGGCTGGCTaGTTGGGGTCAGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: WDSPSHLREAEAWARWSLSILAG*LGSGGC
Trigger: GCAGCCCCCTGACCCCAACCAGCCAGCCAAGATAGA...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GAGTGCAGCTGGCTGGAGCCTTTGGGTGGACAGGCACAGGGTCCCAGAGCTGCCAGTCTCTATCTTGGCTaGCTGGTTGGGGTCAGGGGG +
Preference number: 4 (lower is better)
Translates to: ECSWLEPLGGQAQGPRAASLYLG*LVGVRG
Trigger: CCCCCTGACCCCAACCAGCCAGCCAAGATAGAGACT...GGCAGCTCTGGGACCCTGTGCCTGTCCACCCAAAGGCTCCAGCCAGCTGCACTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCCCCGCTAGTCAGTCTCTATCTTaGCTGGCTGGTTGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: GPRAAASPCTGQQTDLPASQSLS*LAGWGQ
Trigger: CTGACCCCAACCAGCCAGCCAAGATAGAGACTGACT...AGCGGGGAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GCACAGGGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCGAATGCAAGGAGGTATaGAAGGGTGTCCGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: AQGPRAAASPCTGQQTDLECKEV*KGVRSG
Trigger: GCCTGACCGGACACCCTTCCATACCTCCTTGCATTC...GAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGTCCATCCTCCCCCTCTaGCCCTCTCCGTTCTGGAGA +
Preference number: 4 (lower is better)
Translates to: WDSPSHLREAEAWARWSLSILPL*PSPFWR
Trigger: TCTCCAGAACGGAGAGGGCCAGAGGGGGAGGATGGA...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022695.16
CDS-3UTR CCA 90 bp AGGGAAATGGTAAGGCCCCCTGGCCCATCGTGGGGAAGGAAGTCCACGCCTCGTTCCGTTCTGCAGGCCTaGGCTCCCAGCCTCACTTCC +
Preference number: 4 (lower is better)
Translates to: REMVRPPGPSWGRKSTPRSVLQA*APSLTS
Trigger: GGAAGTGAGGCTGGGAGCCCAGGCCTGCAGAACGGA...ACGAGGCGTGGACTTCCTTCCCCACGATGGGCCAGGGGGCCTTACCATTTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022694.17
ENSMUST00000228295.2
CDS-3UTR GCA 90 bp CCTGCCTCCCGCTGCTCCCAGCCAGCAGAGGAAGAGGACACTGTAGGGAAGGGTGTCAGGGGGCTGCGCTaGAGGAAACTTGGAGGATTC +
Preference number: 4 (lower is better)
Translates to: PASRCSQPAEEEDTVGKGVRGLR*RKLGGF
Trigger: GAATCCTCCAAGTTTCCTGCAGCGCAGCCCCCTGAC...ACCCTTCCCTACAGTGTCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGGGCTCAGGGTGGTCCTaGCATAGGAAGGAAGCGAAG +
Preference number: 4 (lower is better)
Translates to: WDSPSHLREAEAWARWSLGSGWS*HRKEAK
Trigger: CTTCGCTTCCTTCCTATGGCAGGACCACCCTGAGCC...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp GCACAGGGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCTCCTCTGCTGACAAATaGCTCTCAAGCCTCATGCGG +
Preference number: 4 (lower is better)
Translates to: AQGPRAAASPCTGQQTDLSSADK*LSSLMR
Trigger: CCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGA...GAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CAGGGCCTCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGGGTAGTCTCAGGGTaGTGGAAGTGGGGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: QGLEAAEGRYCHGQGEPNRVVSG*WKWGRL
Trigger: CAGCCTGCCCCACTTCCACCACCCTGAGACTACCCG...ATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGAGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp AGGGCCTCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCCGGGTAGTCTCAGGGTaGTGGAAGTGGGGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: RASKQQKEGTVTDRASRIRVVSG*WKWGRL
Trigger: CAGCCTGCCCCACTTCCACCACCCTGAGACTACCCG...GATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGAGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTTCTTGGCTGGCTGGTTaGGGTCAGGGGGCTGCGCTG +
Preference number: 4 (lower is better)
Translates to: GFAWRLVVVRRCVNSVSASWLAG*GQGAAL
Trigger: CAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGA...AGCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGGTTTGTCTAGGCAGTAGAGCCCAGGGAAATGGTAAGGCCCCCTGGCCCATCTCTTGGCTGGCTGGTTaGGGTCAGGGGGCTGCGCTG +
Preference number: 4 (lower is better)
Translates to: WVCLGSRAQGNGKAPWPISWLAG*GQGAAL
Trigger: CAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGA...GATGGGCCAGGGGGCCTTACCATTTCCCTGGGCTCTACTGCCTAGACAAACCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CCCCTGGAAAGGTGGCAAGTAGCAGTCTCTCTAGGCCAGCCCTTGCTCCTGCGTTCCATCCTCCCCCTCTaGCCCTCTCCGTTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PLERWQVAVSLGQPLLLRSILPL*PSPFCR
Trigger: CCTGCAGAACGGAGAGGGCCAGAGGGGGAGGATGGA...ACGCAGGAGCAAGGGCTGGCCTAGAGAGACTGCTACTTGCCACCTTTCCAGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
CDS-3UTR TCA 90 bp GTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCCCCGCTACTTGGGGTTGAAGCCTaGGAGATGATTCCAAGAGTC +
Preference number: 4 (lower is better)
Translates to: VPELPPPPVQDSRPTSPLLGVEA*EMIPRV
Trigger: GACTCTTGGAATCATCTCTCAGGCTTCAACCCCAAG...TAGCGGGGAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGCACTTCCCGATGGGCTaGATTCTGTGGACTGTAGCC +
Preference number: 4 (lower is better)
Translates to: WDSPSHLREAEAWARWSLHFPMG*ILWTVA
Trigger: GGCTACAGTCCACAGAATTCAGCCCATCGGGAAGTG...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp AGGGCCTCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCTTGGGGTCAGGGGGCTaGGCTGCAGGAAACTTGGAG +
Preference number: 4 (lower is better)
Translates to: RASKQQKEGTVTDRASRILGSGG*AAGNLE
Trigger: CTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAA...GATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGAGGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp CAGGGCCTCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATTTGGGGTCAGGGGGCTaGGCTGCAGGAAACTTGGAG +
Preference number: 4 (lower is better)
Translates to: QGLEAAEGRYCHGQGEPNLGSGG*AAGNLE
Trigger: CTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAA...ATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGAGGCCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCCCATCTTGGCCACGATaGTGGAGGGAGAGCCGGGCA +
Preference number: 4 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCPSWPR*WRESRA
Trigger: TGCCCGGCTCTCCCTCCAGCATCGTGGCCAAGATGG...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000110984.4
ENSMUST00000228009.2
CDS-3UTR GCA 90 bp TGGGTTTGTCTAGGCAGTAGAGCCCAGGGAAATGGTAAGGCCCCCTGGCCCATCCCATCTTGGCCACGATaGTGGAGGGAGAGCCGGGCA +
Preference number: 4 (lower is better)
Translates to: WVCLGSRAQGNGKAPWPIPSWPR*WRESRA
Trigger: TGCCCGGCTCTCCCTCCAGCATCGTGGCCAAGATGG...GATGGGCCAGGGGGCCTTACCATTTCCCTGGGCTCTACTGCCTAGACAAACCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000110984.4
ENSMUST00000228009.2
CDS-3UTR CCA 90 bp TCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGAGCCGTCCTGGGGGTCCCTGTaGTCCTTGGGGTTGAAGCCT +
Preference number: 4 (lower is better)
Translates to: SKQQKEGTVTDRASRIEPSWGSL*SLGLKP
Trigger: AGGCTTCAACCCCAAGGACCACAGGGACCCCCAGGA...CGGCTCGATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CAGGGCCTCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATGTAGTCTCAGGGTGGTaGAAGTGGGGCAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: QGLEAAEGRYCHGQGEPNVVSGW*KWGRLV
Trigger: GACCAGCCTGCCCCACTTCCACCACCCTGAGACTAC...ATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGAGGCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp AAGTCCACGCCTCGTGACTCTGGGACTGTGCACTTCTTGGCTCTCTCCGTGAGGCGGGTAGTCTCAGGGTaGTGGAAGTGGGGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: KSTPRDSGTVHFLALSVRRVVSG*WKWGRL
Trigger: CAGCCTGCCCCACTTCCACCACCCTGAGACTACCCG...CCTCACGGAGAGAGCCAAGAAGTGCACAGTCCCAGAGTCACGAGGCGTGGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGAGCCGTCTATCTTGGCTGGCTaGTTGGGGTCAGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: SKQQKEGTVTDRASRIEPSILAG*LGSGGC
Trigger: GCAGCCCCCTGACCCCAACCAGCCAGCCAAGATAGA...CGGCTCGATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp AGGGAAATGGTAAGGCCCCCTGGCCCATCGTGGGGAAGGAAGTCCACGCCTCGTAGTCTCTATCTTGGCTaGCTGGTTGGGGTCAGGGGG +
Preference number: 4 (lower is better)
Translates to: REMVRPPGPSWGRKSTPRSLYLG*LVGVRG
Trigger: CCCCCTGACCCCAACCAGCCAGCCAAGATAGAGACT...ACGAGGCGTGGACTTCCTTCCCCACGATGGGCCAGGGGGCCTTACCATTTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGGAATGCAAGGAGGTATaGAAGGGTGTCCGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: WDSPSHLREAEAWARWSLECKEV*KGVRSG
Trigger: GCCTGACCGGACACCCTTCCATACCTCCTTGCATTC...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp AGGGAAATGGTAAGGCCCCCTGGCCCATCGTGGGGAAGGAAGTCCACGCCTCGTGTAGCCGGCTCAGGGTaGTCCTGCCATAGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: REMVRPPGPSWGRKSTPRVAGSG*SCHRKE
Trigger: TTCCTTCCTATGGCAGGACCACCCTGAGCCGGCTAC...ACGAGGCGTGGACTTCCTTCCCCACGATGGGCCAGGGGGCCTTACCATTTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTCTTGGCCACGATGCTaGAGGGAGAGCCGGGCACAC +
Preference number: 4 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCSWPRC*RESRAH
Trigger: GTGTGCCCGGCTCTCCCTCCAGCATCGTGGCCAAGA...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000110984.4
ENSMUST00000228009.2
CDS-3UTR TCA 90 bp GAGTGCAGCTGGCTGGAGCCTTTGGGTGGACAGGCACAGGGTCCCAGAGCTGCCCTTGGGGTTGAAGCCTaGGAGATGATTCCAAGAGTC +
Preference number: 4 (lower is better)
Translates to: ECSWLEPLGGQAQGPRAALGVEA*EMIPRV
Trigger: GACTCTTGGAATCATCTCTCAGGCTTCAACCCCAAG...GGCAGCTCTGGGACCCTGTGCCTGTCCACCCAAAGGCTCCAGCCAGCTGCACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp AAGTCCACGCCTCGTGACTCTGGGACTGTGCACTTCTTGGCTCTCTCCGTGAGGTTGGGGTCAGGGGGCTaGGCTGCAGGAAACTTGGAG +
Preference number: 4 (lower is better)
Translates to: KSTPRDSGTVHFLALSVRLGSGG*AAGNLE
Trigger: CTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAA...CCTCACGGAGAGAGCCAAGAAGTGCACAGTCCCAGAGTCACGAGGCGTGGACTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp CCTGCCTCCCGCTGCTCCCAGCCAGCAGAGGAAGAGGACACTGTAGGGAAGGGTTCCTCTGCTGACAAATaGCTCTCAAGCCTCATGCGG +
Preference number: 4 (lower is better)
Translates to: PASRCSQPAEEEDTVGKGSSADK*LSSLMR
Trigger: CCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGA...ACCCTTCCCTACAGTGTCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp GGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGGCTCCATCTTGGCCACGATaGTGGAGGGAGAGCCGGGCA +
Preference number: 4 (lower is better)
Translates to: GPWTGARTVHPIWFCLEAPSWPR*WRESRA
Trigger: TGCCCGGCTCTCCCTCCAGCATCGTGGCCAAGATGG...AGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000110984.4
ENSMUST00000228009.2
CDS-3UTR CCA 90 bp CCTGCCTCCCGCTGCTCCCAGCCAGCAGAGGAAGAGGACACTGTAGGGAAGGGTCCTGGTTGTCCATCTTaGCCTTCTGCAGACGTTCCA +
Preference number: 4 (lower is better)
Translates to: PASRCSQPAEEEDTVGKGPGCPS*PSADVP
Trigger: TGGAACGTCTGCAGAAGGCCAAGATGGACAACCAGG...ACCCTTCCCTACAGTGTCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022695.16
ENSMUST00000228001.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp ATGGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCGCTCAATGTCCAGGATaGCCTTGTCCTTGGGGATGG +
Preference number: 4 (lower is better)
Translates to: MEGPGSWDSPSHLREAEAAQCPG*PCPWGW
Trigger: CCATCCCCAAGGACAAGGCCATCCTGGACATTGAGC...GGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp ATGGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCAGCACTCCCGGCTTCTaGGCAGCTCTACATGTTCCA +
Preference number: 4 (lower is better)
Translates to: MEGPGSWDSPSHLREAEASTPGF*AALHVP
Trigger: TGGAACATGTAGAGCTGCCCAGAAGCCGGGAGTGCT...GGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGGTTTGTCTAGGCAGTAGAGCCCAGGGAAATGGTAAGGCCCCCTGGCCCATCTCCTGGGGGTCCCTGTaGTCCTTGGGGTTGAAGCCT +
Preference number: 4 (lower is better)
Translates to: WVCLGSRAQGNGKAPWPISWGSL*SLGLKP
Trigger: AGGCTTCAACCCCAAGGACCACAGGGACCCCCAGGA...GATGGGCCAGGGGGCCTTACCATTTCCCTGGGCTCTACTGCCTAGACAAACCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCGTAGTCTCAGGGTGGTaGAAGTGGGGCAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCVVSGW*KWGRLV
Trigger: GACCAGCCTGCCCCACTTCCACCACCCTGAGACTAC...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CTTCTGCCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCTCTTGGCTGGCTGGTTaGGGTCAGGGGGCTGCGCTG +
Preference number: 4 (lower is better)
Translates to: LLPVREASGPSAGNCQECSWLAG*GQGAAL
Trigger: CAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGA...GCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTGGCAGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp AAGTCCACGCCTCGTGACTCTGGGACTGTGCACTTCTTGGCTCTCTCCGTGAGGTCTATCTTGGCTGGCTaGTTGGGGTCAGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: KSTPRDSGTVHFLALSVRSILAG*LGSGGC
Trigger: GCAGCCCCCTGACCCCAACCAGCCAGCCAAGATAGA...CCTCACGGAGAGAGCCAAGAAGTGCACAGTCCCAGAGTCACGAGGCGTGGACTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp ATGGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCGAATGCAAGGAGGTATaGAAGGGTGTCCGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: MEGPGSWDSPSHLREAEAECKEV*KGVRSG
Trigger: GCCTGACCGGACACCCTTCCATACCTCCTTGCATTC...GGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGAGCCGGTAGCCGGCTCAGGGTaGTCCTGCCATAGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: SKQQKEGTVTDRASRIEPVAGSG*SCHRKE
Trigger: TTCCTTCCTATGGCAGGACCACCCTGAGCCGGCTAC...CGGCTCGATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CCTGCCTCCCGCTGCTCCCAGCCAGCAGAGGAAGAGGACACTGTAGGGAAGGGTAGCCTCACTTCCCGATaGGCTGAATTCTGTGGACTG +
Preference number: 4 (lower is better)
Translates to: PASRCSQPAEEEDTVGKGSLTSR*AEFCGL
Trigger: CAGTCCACAGAATTCAGCCCATCGGGAAGTGAGGCT...ACCCTTCCCTACAGTGTCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGAGCCGAATAGATCTGCAGGCCTaGGCTCCCAGCCTCACTTCC +
Preference number: 4 (lower is better)
Translates to: RSSRRKVLSRTGRAESSRIDLQA*APSLTS
Trigger: GGAAGTGAGGCTGGGAGCCCAGGCCTGCAGATCTAT...TCGGCTCGATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp CCTGCCTCCCGCTGCTCCCAGCCAGCAGAGGAAGAGGACACTGTAGGGAAGGGTCTTGGGGTTGAAGCCTaGGAGATGATTCCAAGAGTC +
Preference number: 4 (lower is better)
Translates to: PASRCSQPAEEEDTVGKGLGVEA*EMIPRV
Trigger: GACTCTTGGAATCATCTCTCAGGCTTCAACCCCAAG...ACCCTTCCCTACAGTGTCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGCTTGGGGTTGAAGCCTaGGAGATGATTCCAAGAGTC +
Preference number: 4 (lower is better)
Translates to: WDSPSHLREAEAWARWSLLGVEA*EMIPRV
Trigger: GACTCTTGGAATCATCTCTCAGGCTTCAACCCCAAG...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp AAGTCCACGCCTCGTGACTCTGGGACTGTGCACTTCTTGGCTCTCTCCGTGAGGGTCAGGGGGCTGCGCTaGAGGAAACTTGGAGGATTC +
Preference number: 4 (lower is better)
Translates to: KSTPRDSGTVHFLALSVRVRGLR*RKLGGF
Trigger: GAATCCTCCAAGTTTCCTGCAGCGCAGCCCCCTGAC...CCTCACGGAGAGAGCCAAGAAGTGCACAGTCCCAGAGTCACGAGGCGTGGACTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp GGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGGCTTTGGGGTCAGGGGGCTaGGCTGCAGGAAACTTGGAG +
Preference number: 4 (lower is better)
Translates to: GPWTGARTVHPIWFCLEALGSGG*AAGNLE
Trigger: CTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAA...AGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp GGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTGGCTCAGGGTGGTCCTaGCATAGGAAGGAAGCGAAG +
Preference number: 4 (lower is better)
Translates to: GFAWRLVVVRRCVNSVSAGSGWS*HRKEAK
Trigger: CTTCGCTTCCTTCCTATGGCAGGACCACCCTGAGCC...AGCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp TGGGTTTGTCTAGGCAGTAGAGCCCAGGGAAATGGTAAGGCCCCCTGGCCCATCGGCTCAGGGTGGTCCTaGCATAGGAAGGAAGCGAAG +
Preference number: 4 (lower is better)
Translates to: WVCLGSRAQGNGKAPWPIGSGWS*HRKEAK
Trigger: CTTCGCTTCCTTCCTATGGCAGGACCACCCTGAGCC...GATGGGCCAGGGGGCCTTACCATTTCCCTGGGCTCTACTGCCTAGACAAACCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp AGGGAAATGGTAAGGCCCCCTGGCCCATCGTGGGGAAGGAAGTCCACGCCTCGTCCTGGTTGTCCATCTTaGCCTTCTGCAGACGTTCCA +
Preference number: 4 (lower is better)
Translates to: REMVRPPGPSWGRKSTPRPGCPS*PSADVP
Trigger: TGGAACGTCTGCAGAAGGCCAAGATGGACAACCAGG...ACGAGGCGTGGACTTCCTTCCCCACGATGGGCCAGGGGGCCTTACCATTTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000022695.16
ENSMUST00000228001.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TCGAGATGCCTTCCGTTTCCTCCATTCTGTCTCCACAACGGCCAGCGACGGGGGAGCACTCCCGGCTTCTaGGCAGCTCTACATGTTCCA +
Preference number: 4 (lower is better)
Translates to: SRCLPFPPFCLHNGQRRGSTPGF*AALHVP
Trigger: TGGAACATGTAGAGCTGCCCAGAAGCCGGGAGTGCT...CCCCCGTCGCTGGCCGTTGTGGAGACAGAATGGAGGAAACGGAAGGCATCTCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227331.2
CDS-3UTR CCA 90 bp CAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCAGCTGGCTCCTGGGGGTCCCTGTaGTCCTTGGGGTTGAAGCCT +
Preference number: 4 (lower is better)
Translates to: QLEKHQAQVQETARSAAGSWGSL*SLGLKP
Trigger: AGGCTTCAACCCCAAGGACCACAGGGACCCCCAGGA...GCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGGTAGTCTCAGGGTGGTaGAAGTGGGGCAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGVVSGW*KWGRLV
Trigger: GACCAGCCTGCCCCACTTCCACCACCCTGAGACTAC...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GGTGGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGTCTATCTTGGCTGGCTaGTTGGGGTCAGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GGPWTGARTVHPIWFCLESILAG*LGSGGC
Trigger: GCAGCCCCCTGACCCCAACCAGCCAGCCAAGATAGA...CTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGTCTATCTTGGCTGGCTaGTTGGGGTCAGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGSILAG*LGSGGC
Trigger: GCAGCCCCCTGACCCCAACCAGCCAGCCAAGATAGA...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CCGTTCCTGCTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGGTAAGTCTCTATCTTGGCTaGCTGGTTGGGGTCAGGGGG +
Preference number: 4 (lower is better)
Translates to: PFLLPLLSAWQPGGNLLVSLYLG*LVGVRG
Trigger: CCCCCTGACCCCAACCAGCCAGCCAAGATAGAGACT...TACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp CGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGAGCCGAGAATGCAAGGAGGTATaGAAGGGTGTCCGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: RSSRRKVLSRTGRAESSRECKEV*KGVRSG
Trigger: GCCTGACCGGACACCCTTCCATACCTCCTTGCATTC...TCGGCTCGATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CCGTTCCTGCTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGGTAGTAGCCGGCTCAGGGTaGTCCTGCCATAGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: PFLLPLLSAWQPGGNLLVVAGSG*SCHRKE
Trigger: TTCCTTCCTATGGCAGGACCACCCTGAGCCGGCTAC...TACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCGTAGCCGGCTCAGGGTaGTCCTGCCATAGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCVAGSG*SCHRKE
Trigger: TTCCTTCCTATGGCAGGACCACCCTGAGCCGGCTAC...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp AGGGAAATGGTAAGGCCCCCTGGCCCATCGTGGGGAAGGAAGTCCACGCCTCGTAGCCTCACTTCCCGATaGGCTGAATTCTGTGGACTG +
Preference number: 4 (lower is better)
Translates to: REMVRPPGPSWGRKSTPRSLTSR*AEFCGL
Trigger: CAGTCCACAGAATTCAGCCCATCGGGAAGTGAGGCT...ACGAGGCGTGGACTTCCTTCCCCACGATGGGCCAGGGGGCCTTACCATTTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CATAGTGGTTGCAGGCAGAAGGCTTCACCAAGGCAGTCAGAGGCCATCAAGGCATCTTGGCCACGATGCTaGAGGGAGAGCCGGGCACAC +
Preference number: 4 (lower is better)
Translates to: HSGCRQKASPRQSEAIKASWPRC*RESRAH
Trigger: GTGTGCCCGGCTCTCCCTCCAGCATCGTGGCCAAGA...TGCCTTGATGGCCTCTGACTGCCTTGGTGAAGCCTTCTGCCTGCAACCACTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022694.17
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp GGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTATAGATCTGCAGGCCTaGGCTCCCAGCCTCACTTCC +
Preference number: 4 (lower is better)
Translates to: GFAWRLVVVRRCVNSVSAIDLQA*APSLTS
Trigger: GGAAGTGAGGCTGGGAGCCCAGGCCTGCAGATCTAT...AGCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGGTTTGTCTAGGCAGTAGAGCCCAGGGAAATGGTAAGGCCCCCTGGCCCATCATAGATCTGCAGGCCTaGGCTCCCAGCCTCACTTCC +
Preference number: 4 (lower is better)
Translates to: WVCLGSRAQGNGKAPWPIIDLQA*APSLTS
Trigger: GGAAGTGAGGCTGGGAGCCCAGGCCTGCAGATCTAT...GATGGGCCAGGGGGCCTTACCATTTCCCTGGGCTCTACTGCCTAGACAAACCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp AGGGAAATGGTAAGGCCCCCTGGCCCATCGTGGGGAAGGAAGTCCACGCCTCGTTTGAAGCCTGAGAGATaGTTCCAAGAGTCCGGCTCT +
Preference number: 4 (lower is better)
Translates to: REMVRPPGPSWGRKSTPRLKPER*FQESGS
Trigger: AGAGCCGGACTCTTGGAATCATCTCTCAGGCTTCAA...ACGAGGCGTGGACTTCCTTCCCCACGATGGGCCAGGGGGCCTTACCATTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp ATGGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCCTTGGGGTTGAAGCCTaGGAGATGATTCCAAGAGTC +
Preference number: 4 (lower is better)
Translates to: MEGPGSWDSPSHLREAEALGVEA*EMIPRV
Trigger: GACTCTTGGAATCATCTCTCAGGCTTCAACCCCAAG...GGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp AAGTCCACGCCTCGTGACTCTGGGACTGTGCACTTCTTGGCTCTCTCCGTGAGGCACTTCCCGATGGGCTaGATTCTGTGGACTGTAGCC +
Preference number: 4 (lower is better)
Translates to: KSTPRDSGTVHFLALSVRHFPMG*ILWTVA
Trigger: GGCTACAGTCCACAGAATTCAGCCCATCGGGAAGTG...CCTCACGGAGAGAGCCAAGAAGTGCACAGTCCCAGAGTCACGAGGCGTGGACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCCACTTCCCGATGGGCTaGATTCTGTGGACTGTAGCC +
Preference number: 4 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCHFPMG*ILWTVA
Trigger: GGCTACAGTCCACAGAATTCAGCCCATCGGGAAGTG...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp TCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGAGCCGTTCCTCCTCTTCCTCTaGCCCCTTTCGAGATGCCTT +
Preference number: 4 (lower is better)
Translates to: SKQQKEGTVTDRASRIEPFLLFL*PLSRCL
Trigger: AAGGCATCTCGAAAGGGGGCAGAGGAAGAGGAGGAA...CGGCTCGATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp GTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGACTGGCTCAGGGTGGTCCTaGCATAGGAAGGAAGCGAAG +
Preference number: 4 (lower is better)
Translates to: VESTVGDAWQWRDLGAGTGSGWS*HRKEAK
Trigger: CTTCGCTTCCTTCCTATGGCAGGACCACCCTGAGCC...AGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CTTCTGCCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCGTAGTCTCAGGGTGGTaGAAGTGGGGCAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: LLPVREASGPSAGNCQECVVSGW*KWGRLV
Trigger: GACCAGCCTGCCCCACTTCCACCACCCTGAGACTAC...GCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTGGCAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GCAGAGTGTCTACTTAGCACACACAAAGCCTGGGTTGGCTCCCTAGCCCCAAATCGGGTAGTCTCAGGGTaGTGGAAGTGGGGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: AECLLSTHKAWVGSLAPNRVVSG*WKWGRL
Trigger: CAGCCTGCCCCACTTCCACCACCCTGAGACTACCCG...ATTTGGGGCTAGGGAGCCAACCCAGGCTTTGTGTGTGCTAAGTAGACACTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp GGTCAGGCAGAGAGCGTGTTTTCCTCCGGATGGGCAATGACTTTTCCATCTCTTTCTTGGCTGGCTGGTTaGGGTCAGGGGGCTGCGCTG +
Preference number: 4 (lower is better)
Translates to: GQAESVFSSGWAMTFPSLSWLAG*GQGAAL
Trigger: CAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGA...AAGAGATGGAAAAGTCATTGCCCATCCGGAGGAAAACACGCTCTCTGCCTGACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000227331.2
CDS-3UTR CCA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGAGTCTCTATCTTGGCTaGCTGGTTGGGGTCAGGGGG +
Preference number: 4 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGSLYLG*LVGVRG
Trigger: CCCCCTGACCCCAACCAGCCAGCCAAGATAGAGACT...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CCGTTCCTGCTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGGTAGAATGCAAGGAGGTATaGAAGGGTGTCCGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: PFLLPLLSAWQPGGNLLVECKEV*KGVRSG
Trigger: GCCTGACCGGACACCCTTCCATACCTCCTTGCATTC...TACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp AGGGCCTCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCAGCCTCACTTCCCGATaGGCTGAATTCTGTGGACTG +
Preference number: 4 (lower is better)
Translates to: RASKQQKEGTVTDRASRISLTSR*AEFCGL
Trigger: CAGTCCACAGAATTCAGCCCATCGGGAAGTGAGGCT...GATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGAGGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGACTATAGATCTGCAGGCCTaGGCTCCCAGCCTCACTTCC +
Preference number: 4 (lower is better)
Translates to: VESTVGDAWQWRDLGAGTIDLQA*APSLTS
Trigger: GGAAGTGAGGCTGGGAGCCCAGGCCTGCAGATCTAT...AGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228824.2
3UTR CAA 72 bp GCAGAGGCACCTTGGGTCCTAGGGAGGCCGGTGTGTTaGAGGTCATCTTCTGAGGCTCTGTCAAGCTCTCTC +
Preference number: 4 (lower is better)
Translates to: AEAPWVLGRPVC*RSSSEALSSSL
Trigger: GAGAGAGCTTGACAGAGCCTCAGAAGATGACCTCAAACACACCGGCCTCCCTAGGACCCAAGGTGCCTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
3UTR CAA 72 bp GCAGCTGGAGATGTAGCTGGCTCTGCAGTAGAGTGCTaGCCTAGCAGGCCCAAGACCCTGGCTTTGATCTCC +
Preference number: 4 (lower is better)
Translates to: AAGDVAGSAVEC*PSRPKTLALIS
Trigger: GGAGATCAAAGCCAGGGTCTTGGGCCTGCTAGGCAAGCACTCTACTGCAGAGCCAGCTACATCTCCAGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
CDS-3UTR GCA 90 bp CCCAAGTTGGAAGTAACCTTACTGAGCTCCTCTTTCTGCCGTTCCCTGATGGCCTTGGGGTCAGGGGGCTaGGCTGCAGGAAACTTGGAG +
Preference number: 4 (lower is better)
Translates to: PKLEVTLLSSSFCRSLMALGSGG*AAGNLE
Trigger: CTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAA...GGCCATCAGGGAACGGCAGAAAGAGGAGCTCAGTAAGGTTACTTCCAACTTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227331.2
CDS-3UTR GCA 90 bp CCGTTCCTGCTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGGTATTCCTCCTCTTCCTCTaGCCCCTTTCGAGATGCCTT +
Preference number: 4 (lower is better)
Translates to: PFLLPLLSAWQPGGNLLVFLLFL*PLSRCL
Trigger: AAGGCATCTCGAAAGGGGGCAGAGGAAGAGGAGGAA...TACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR GCA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTTCCTCCTCTTCCTCTaGCCCCTTTCGAGATGCCTT +
Preference number: 4 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCFLLFL*PLSRCL
Trigger: AAGGCATCTCGAAAGGGGGCAGAGGAAGAGGAGGAA...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp AAGTCCACGCCTCGTGACTCTGGGACTGTGCACTTCTTGGCTCTCTCCGTGAGGTTCCTCCTCTTCCTCTaGCCCCTTTCGAGATGCCTT +
Preference number: 4 (lower is better)
Translates to: KSTPRDSGTVHFLALSVRFLLFL*PLSRCL
Trigger: AAGGCATCTCGAAAGGGGGCAGAGGAAGAGGAGGAA...CCTCACGGAGAGAGCCAAGAAGTGCACAGTCCCAGAGTCACGAGGCGTGGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCAGTCAGTCTCTATCTTaGCTGGCTGGTTGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCSQSLS*LAGWGQ
Trigger: CTGACCCCAACCAGCCAGCCAAGATAGAGACTGACT...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGGTTTGTCTAGGCAGTAGAGCCCAGGGAAATGGTAAGGCCCCCTGGCCCATCAGTCAGTCTCTATCTTaGCTGGCTGGTTGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: WVCLGSRAQGNGKAPWPISQSLS*LAGWGQ
Trigger: CTGACCCCAACCAGCCAGCCAAGATAGAGACTGACT...GATGGGCCAGGGGGCCTTACCATTTCCCTGGGCTCTACTGCCTAGACAAACCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGGCTGAATGCAAGGAGGTATaGAAGGGTGTCCGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: GPWTGARTVHPIWFCLEAECKEV*KGVRSG
Trigger: GCCTGACCGGACACCCTTCCATACCTCCTTGCATTC...AGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TGGGTTTGTCTAGGCAGTAGAGCCCAGGGAAATGGTAAGGCCCCCTGGCCCATCAGCCTCACTTCCCGATaGGCTGAATTCTGTGGACTG +
Preference number: 4 (lower is better)
Translates to: WVCLGSRAQGNGKAPWPISLTSR*AEFCGL
Trigger: CAGTCCACAGAATTCAGCCCATCGGGAAGTGAGGCT...GATGGGCCAGGGGGCCTTACCATTTCCCTGGGCTCTACTGCCTAGACAAACCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
3UTR CAA 72 bp AGGCAGTCAGAGGCCATCAAGGCACCAAGGCACCATTaGTCCCTCAGTTACCAGGTCTCCGTTCCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: RQSEAIKAPRHH*SLSYQVSVPAS
Trigger: GGAAGCAGGAACGGAGACCTGGTAACTGAGGGACAAATGGTGCCTTGGTGCCTTGATGGCCTCTGACTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR TCA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTTGAAGCCTGAGAGATaGTTCCAAGAGTCCGGCTCT +
Preference number: 4 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCLKPER*FQESGS
Trigger: AGAGCCGGACTCTTGGAATCATCTCTCAGGCTTCAA...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp GGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTTTGAAGCCTGAGAGATaGTTCCAAGAGTCCGGCTCT +
Preference number: 4 (lower is better)
Translates to: GFAWRLVVVRRCVNSVSALKPER*FQESGS
Trigger: AGAGCCGGACTCTTGGAATCATCTCTCAGGCTTCAA...AGCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp TCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGAGCCGCCTCCGGATGGGCAATaGCTTTTCCATCTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: SKQQKEGTVTDRASRIEPPPDGQ*LFHLFF
Trigger: AAAGAAGAGATGGAAAAGTCATTGCCCATCCGGAGG...CGGCTCGATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp GCAGAGTGTCTACTTAGCACACACAAAGCCTGGGTTGGCTCCCTAGCCCCAAATGTCAGGGGGCTGCGCTaGAGGAAACTTGGAGGATTC +
Preference number: 4 (lower is better)
Translates to: AECLLSTHKAWVGSLAPNVRGLR*RKLGGF
Trigger: GAATCCTCCAAGTTTCCTGCAGCGCAGCCCCCTGAC...ATTTGGGGCTAGGGAGCCAACCCAGGCTTTGTGTGTGCTAAGTAGACACTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR GCA 90 bp GGTGGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGTTCCTCCTCTTCCTCTaGCCCCTTTCGAGATGCCTT +
Preference number: 4 (lower is better)
Translates to: GGPWTGARTVHPIWFCLEFLLFL*PLSRCL
Trigger: AAGGCATCTCGAAAGGGGGCAGAGGAAGAGGAGGAA...CTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp ATGGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTTAGATGTTCCCGAATaGAAGGAGGTATGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: MEGPGSWDSPSHLREAEALDVPE*KEVWKG
Trigger: ACCCTTCCATACCTCCTTGCATTCGGGAACATCTAA...GGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp GTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGACTTCCTCTGCTGACAAATaGCTCTCAAGCCTCATGCGG +
Preference number: 4 (lower is better)
Translates to: VESTVGDAWQWRDLGAGTSSADK*LSSLMR
Trigger: CCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGA...AGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGTCCTCTGCTGACAAATaGCTCTCAAGCCTCATGCGG +
Preference number: 4 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGSSADK*LSSLMR
Trigger: CCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGA...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp GGTGGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGTCCTCTGCTGACAAATaGCTCTCAAGCCTCATGCGG +
Preference number: 4 (lower is better)
Translates to: GGPWTGARTVHPIWFCLESSADK*LSSLMR
Trigger: CCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGA...CTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCAGCTGGCCCTGGTTGTCCATCTTaGCCTTCTGCAGACGTTCCA +
Preference number: 4 (lower is better)
Translates to: QLEKHQAQVQETARSAAGPGCPS*PSADVP
Trigger: TGGAACGTCTGCAGAAGGCCAAGATGGACAACCAGG...GCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022695.16
ENSMUST00000228001.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CATAGTGGTTGCAGGCAGAAGGCTTCACCAAGGCAGTCAGAGGCCATCAAGGCAAGCACTCCCGGCTTCTaGGCAGCTCTACATGTTCCA +
Preference number: 4 (lower is better)
Translates to: HSGCRQKASPRQSEAIKASTPGF*AALHVP
Trigger: TGGAACATGTAGAGCTGCCCAGAAGCCGGGAGTGCT...TGCCTTGATGGCCTCTGACTGCCTTGGTGAAGCCTTCTGCCTGCAACCACTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp CATATGTTGCTTCCCTTGGTAACCAGTGAACTTTCTACAGCGCCCGGCTGTGAGTCCTGGGGGTCCCTGTaGTCCTTGGGGTTGAAGCCT +
Preference number: 4 (lower is better)
Translates to: HMLLPLVTSELSTAPGCESWGSL*SLGLKP
Trigger: AGGCTTCAACCCCAAGGACCACAGGGACCCCCAGGA...CTCACAGCCGGGCGCTGTAGAAAGTTCACTGGTTACCAAGGGAAGCAACATATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
CDS-3UTR CCA 90 bp CCCTGTGCAAGCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTGCACACTTCTTGGCTGGCTGGTTaGGGTCAGGGGGCTGCGCTG +
Preference number: 4 (lower is better)
Translates to: PCASPSRLLFDLPIKLHTSWLAG*GQGAAL
Trigger: CAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGA...AGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGCTTGCACAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp GCAGAGTGTCTACTTAGCACACACAAAGCCTGGGTTGGCTCCCTAGCCCCAAATAGTCTCTATCTTGGCTaGCTGGTTGGGGTCAGGGGG +
Preference number: 4 (lower is better)
Translates to: AECLLSTHKAWVGSLAPNSLYLG*LVGVRG
Trigger: CCCCCTGACCCCAACCAGCCAGCCAAGATAGAGACT...ATTTGGGGCTAGGGAGCCAACCCAGGCTTTGTGTGTGCTAAGTAGACACTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp GGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGGCTAGTCAGTCTCTATCTTaGCTGGCTGGTTGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: GPWTGARTVHPIWFCLEASQSLS*LAGWGQ
Trigger: CTGACCCCAACCAGCCAGCCAAGATAGAGACTGACT...AGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp GGTGGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGAGCCTCACTTCCCGATaGGCTGAATTCTGTGGACTG +
Preference number: 4 (lower is better)
Translates to: GGPWTGARTVHPIWFCLESLTSR*AEFCGL
Trigger: CAGTCCACAGAATTCAGCCCATCGGGAAGTGAGGCT...CTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp CAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCAGCTGGCCTTGGGGTTGAAGCCTaGGAGATGATTCCAAGAGTC +
Preference number: 4 (lower is better)
Translates to: QLEKHQAQVQETARSAAGLGVEA*EMIPRV
Trigger: GACTCTTGGAATCATCTCTCAGGCTTCAACCCCAAG...GCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCCCTCCGGATGGGCAATaGCTTTTCCATCTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCPPDGQ*LFHLFF
Trigger: AAAGAAGAGATGGAAAAGTCATTGCCCATCCGGAGG...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp CGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGAGCCGATTAGATGTTCCCGAATaGAAGGAGGTATGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: RSSRRKVLSRTGRAESSRLDVPE*KEVWKG
Trigger: ACCCTTCCATACCTCCTTGCATTCGGGAACATCTAA...TCGGCTCGATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp CTTCTGCCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCTCCTCTGCTGACAAATaGCTCTCAAGCCTCATGCGG +
Preference number: 4 (lower is better)
Translates to: LLPVREASGPSAGNCQECSSADK*LSSLMR
Trigger: CCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGA...GCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTGGCAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CTTCTGCCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCCCTGGTTGTCCATCTTaGCCTTCTGCAGACGTTCCA +
Preference number: 4 (lower is better)
Translates to: LLPVREASGPSAGNCQECPGCPS*PSADVP
Trigger: TGGAACGTCTGCAGAAGGCCAAGATGGACAACCAGG...GCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTGGCAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022695.16
ENSMUST00000228001.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAGTAGTCTCAGGGTGGTaGAAGTGGGGCAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGVVSGW*KWGRLV
Trigger: GACCAGCCTGCCCCACTTCCACCACCCTGAGACTAC...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CCCTGTGCAAGCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTGCACACTTCTTGGCCACGATGCTaGAGGGAGAGCCGGGCACAC +
Preference number: 4 (lower is better)
Translates to: PCASPSRLLFDLPIKLHTSWPRC*RESRAH
Trigger: GTGTGCCCGGCTCTCCCTCCAGCATCGTGGCCAAGA...AGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGCTTGCACAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022694.17
ENSMUST00000110984.4
3UTR CAA 72 bp TTGATCTTCCAATCAAACTGCACACTCAGCCCCACCTaGGGCACGCAGCTCCATAGTGGTTGCAGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: LIFQSNCTLSPT*GTQLHSGCRQK
Trigger: CTTCTGCCTGCAACCACTATGGAGCTGCGTGCCCAAGGTGGGGCTGAGTGTGCAGTTTGATTGGAAGATCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR TCA 90 bp CTTCTGCCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCTTGAAGCCTGAGAGATaGTTCCAAGAGTCCGGCTCT +
Preference number: 4 (lower is better)
Translates to: LLPVREASGPSAGNCQECLKPER*FQESGS
Trigger: AGAGCCGGACTCTTGGAATCATCTCTCAGGCTTCAA...GCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTGGCAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp GTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGACTCCTCCGGATGGGCAATaGCTTTTCCATCTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: VESTVGDAWQWRDLGAGTPPDGQ*LFHLFF
Trigger: AAAGAAGAGATGGAAAAGTCATTGCCCATCCGGAGG...AGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp CAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCAGCTGGCCCTCCGGATGGGCAATaGCTTTTCCATCTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: QLEKHQAQVQETARSAAGPPDGQ*LFHLFF
Trigger: AAAGAAGAGATGGAAAAGTCATTGCCCATCCGGAGG...GCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp AAGTCCACGCCTCGTGACTCTGGGACTGTGCACTTCTTGGCTCTCTCCGTGAGGTTAGATGTTCCCGAATaGAAGGAGGTATGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: KSTPRDSGTVHFLALSVRLDVPE*KEVWKG
Trigger: ACCCTTCCATACCTCCTTGCATTCGGGAACATCTAA...CCTCACGGAGAGAGCCAAGAAGTGCACAGTCCCAGAGTCACGAGGCGTGGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAAGTCTCTATCTTGGCTaGCTGGTTGGGGTCAGGGGG +
Preference number: 4 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGSLYLG*LVGVRG
Trigger: CCCCCTGACCCCAACCAGCCAGCCAAGATAGAGACT...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp AGAGAGGAACGGGACTATGGTATTGTCTCTAAGCCCACTCTGGCTCACATGAAAGGCTCAGGGTGGTCCTaGCATAGGAAGGAAGCGAAG +
Preference number: 4 (lower is better)
Translates to: REERDYGIVSKPTLAHMKGSGWS*HRKEAK
Trigger: CTTCGCTTCCTTCCTATGGCAGGACCACCCTGAGCC...TTTCATGTGAGCCAGAGTGGGCTTAGAGACAATACCATAGTCCCGTTCCTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAGAATGCAAGGAGGTATaGAAGGGTGTCCGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGECKEV*KGVRSG
Trigger: GCCTGACCGGACACCCTTCCATACCTCCTTGCATTC...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CCCTGTGCAAGCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTGCACACTGTAGCCGGCTCAGGGTaGTCCTGCCATAGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: PCASPSRLLFDLPIKLHTVAGSG*SCHRKE
Trigger: TTCCTTCCTATGGCAGGACCACCCTGAGCCGGCTAC...AGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGCTTGCACAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp ACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCTCCATCCTCCCCCTCTaGCCCTCTCCGTTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: TIDLGTQCNLLIPSSYPSSILPL*PSPFCR
Trigger: CCTGCAGAACGGAGAGGGCCAGAGGGGGAGGATGGA...GGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022694.17
ENSMUST00000228295.2
CDS-3UTR TCA 90 bp CCCTGTGCAAGCCCATCCCGTCTTCTTTTTGATCTTCCAATCAAACTGCACACTCACTTCCCGATGGGCTaGATTCTGTGGACTGTAGCC +
Preference number: 4 (lower is better)
Translates to: PCASPSRLLFDLPIKLHTHFPMG*ILWTVA
Trigger: GGCTACAGTCCACAGAATTCAGCCCATCGGGAAGTG...AGTGTGCAGTTTGATTGGAAGATCAAAAAGAAGACGGGATGGGCTTGCACAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR TCA 90 bp CAGGGAAGCAGCAGAGGGTGCCCCAATAAATTACATTCTGTAGAGAGCACAGTACACTTCCCGATGGGCTaGATTCTGTGGACTGTAGCC +
Preference number: 4 (lower is better)
Translates to: QGSSRGCPNKLHSVESTVHFPMG*ILWTVA
Trigger: GGCTACAGTCCACAGAATTCAGCCCATCGGGAAGTG...TACTGTGCTCTCTACAGAATGTAATTTATTGGGGCACCCTCTGCTGCTTCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp ACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCTTGGGGTCAGGGGGCTaGGCTGCAGGAAACTTGGAG +
Preference number: 4 (lower is better)
Translates to: TIDLGTQCNLLIPSSYPSLGSGG*AAGNLE
Trigger: CTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAA...GGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
CDS-3UTR GCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGATTCCTCCTCTTCCTCTaGCCCCTTTCGAGATGCCTT +
Preference number: 4 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGFLLFL*PLSRCL
Trigger: AAGGCATCTCGAAAGGGGGCAGAGGAAGAGGAGGAA...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp CATAGTGGTTGCAGGCAGAAGGCTTCACCAAGGCAGTCAGAGGCCATCAAGGCATTAGATGTTCCCGAATaGAAGGAGGTATGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: HSGCRQKASPRQSEAIKALDVPE*KEVWKG
Trigger: ACCCTTCCATACCTCCTTGCATTCGGGAACATCTAA...TGCCTTGATGGCCTCTGACTGCCTTGGTGAAGCCTTCTGCCTGCAACCACTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp AGAGAGGAACGGGACTATGGTATTGTCTCTAAGCCCACTCTGGCTCACATGAAAAGCACTCCCGGCTTCTaGGCAGCTCTACATGTTCCA +
Preference number: 4 (lower is better)
Translates to: REERDYGIVSKPTLAHMKSTPGF*AALHVP
Trigger: TGGAACATGTAGAGCTGCCCAGAAGCCGGGAGTGCT...TTTCATGTGAGCCAGAGTGGGCTTAGAGACAATACCATAGTCCCGTTCCTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CCA 90 bp ATTATATACACGTACATATGTGGACAGACAGGACTGGAAGTGCAATTAGGTAGGTCTTGGCTGGCTGGTTaGGGTCAGGGGGCTGCGCTG +
Preference number: 4 (lower is better)
Translates to: IIYTYICGQTGLEVQLGRSWLAG*GQGAAL
Trigger: CAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGA...CCTACCTAATTGCACTTCCAGTCCTGTCTGTCCACATATGTACGTGTATATAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp CAGGGAAGCAGCAGAGGGTGCCCCAATAAATTACATTCTGTAGAGAGCACAGTAAGTCAGTCTCTATCTTaGCTGGCTGGTTGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: QGSSRGCPNKLHSVESTVSQSLS*LAGWGQ
Trigger: CTGACCCCAACCAGCCAGCCAAGATAGAGACTGACT...TACTGTGCTCTCTACAGAATGTAATTTATTGGGGCACCCTCTGCTGCTTCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CCA 90 bp ACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCGTAGCCGGCTCAGGGTaGTCCTGCCATAGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: TIDLGTQCNLLIPSSYPSVAGSG*SCHRKE
Trigger: TTCCTTCCTATGGCAGGACCACCCTGAGCCGGCTAC...GGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
3UTR CAA 72 bp GTTGACCTTGGACTCCCAATCTTCCTTTCCTTAGTGTaGGGATCTGGCATATGCCTGGTGTGTCCACTGCTA +
Preference number: 4 (lower is better)
Translates to: VDLGLPIFLSLV*GSGICLVCPLL
Trigger: TAGCAGTGGACACACCAGGCATATGCCAGATCCCAACACTAAGGAAAGGAAGATTGGGAGTCCAAGGTCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
CDS-3UTR TCA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGACCTCCGGATGGGCAATaGCTTTTCCATCTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGPPDGQ*LFHLFF
Trigger: AAAGAAGAGATGGAAAAGTCATTGCCCATCCGGAGG...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp AATATGCGATATATGCCTGTGATCCCAGCACTCGGAAAGGCAAATGCTGGATCATCCTCTGCTGACAAATaGCTCTCAAGCCTCATGCGG +
Preference number: 4 (lower is better)
Translates to: NMRYMPVIPALGKANAGSSSADK*LSSLMR
Trigger: CCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGA...TGATCCAGCATTTGCCTTTCCGAGTGCTGGGATCACAGGCATATATCGCATATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR TCA 90 bp TTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCCAGCATGATCCTCCGGATGGGCAATaGCTTTTCCATCTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: LGTQCNLLIPSSYPSQHDPPDGQ*LFHLFF
Trigger: AAAGAAGAGATGGAAAAGTCATTGCCCATCCGGAGG...ATCATGCTGGGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
CDS-3UTR GCA 90 bp TCTTCTTTCAAGATCATCTTTCCCAAGTTGGAAGTAACCTTACTGAGCTCCTCTGTCAGGGGGCTGCGCTaGAGGAAACTTGGAGGATTC +
Preference number: 4 (lower is better)
Translates to: SSFKIIFPKLEVTLLSSSVRGLR*RKLGGF
Trigger: GAATCCTCCAAGTTTCCTGCAGCGCAGCCCCCTGAC...AGAGGAGCTCAGTAAGGTTACTTCCAACTTGGGAAAGATGATCTTGAAAGAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227331.2
CDS-3UTR CCA 90 bp ACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCAGCCTCACTTCCCGATaGGCTGAATTCTGTGGACTG +
Preference number: 4 (lower is better)
Translates to: TIDLGTQCNLLIPSSYPSSLTSR*AEFCGL
Trigger: CAGTCCACAGAATTCAGCCCATCGGGAAGTGAGGCT...GGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
CDS-3UTR GCA 90 bp AGAGAGGAACGGGACTATGGTATTGTCTCTAAGCCCACTCTGGCTCACATGAAATTAGATGTTCCCGAATaGAAGGAGGTATGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: REERDYGIVSKPTLAHMKLDVPE*KEVWKG
Trigger: ACCCTTCCATACCTCCTTGCATTCGGGAACATCTAA...TTTCATGTGAGCCAGAGTGGGCTTAGAGACAATACCATAGTCCCGTTCCTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR GCA 90 bp CAGGGAAGCAGCAGAGGGTGCCCCAATAAATTACATTCTGTAGAGAGCACAGTATTAGATGTTCCCGAATaGAAGGAGGTATGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: QGSSRGCPNKLHSVESTVLDVPE*KEVWKG
Trigger: ACCCTTCCATACCTCCTTGCATTCGGGAACATCTAA...TACTGTGCTCTCTACAGAATGTAATTTATTGGGGCACCCTCTGCTGCTTCCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR GCA 90 bp TCAAAATTTGTCCTACCACAAACATTTCCAGTCAATCTGATCATATGTTGCTTCTTGGGGTCAGGGGGCTaGGCTGCAGGAAACTTGGAG +
Preference number: 4 (lower is better)
Translates to: SKFVLPQTFPVNLIICCFLGSGG*AAGNLE
Trigger: CTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAA...GAAGCAACATATGATCAGATTGACTGGAAATGTTTGTGGTAGGACAAATTTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
CDS-3UTR GCA 90 bp TGCACAGGCATGGATAGAAACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTTCCTCCTCTTCCTCTaGCCCCTTTCGAGATGCCTT +
Preference number: 4 (lower is better)
Translates to: CTGMDRNNRFRDPVQPFNFLLFL*PLSRCL
Trigger: AAGGCATCTCGAAAGGGGGCAGAGGAAGAGGAGGAA...ATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGTTTCTATCCATGCCTGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
CDS-3UTR CCA 90 bp ATTATATACACGTACATATGTGGACAGACAGGACTGGAAGTGCAATTAGGTAGGAGCCTCACTTCCCGATaGGCTGAATTCTGTGGACTG +
Preference number: 4 (lower is better)
Translates to: IIYTYICGQTGLEVQLGRSLTSR*AEFCGL
Trigger: CAGTCCACAGAATTCAGCCCATCGGGAAGTGAGGCT...CCTACCTAATTGCACTTCCAGTCCTGTCTGTCCACATATGTACGTGTATATAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR TCA 90 bp TGCACAGGCATGGATAGAAACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTTGAAGCCTGAGAGATaGTTCCAAGAGTCCGGCTCT +
Preference number: 4 (lower is better)
Translates to: CTGMDRNNRFRDPVQPFNLKPER*FQESGS
Trigger: AGAGCCGGACTCTTGGAATCATCTCTCAGGCTTCAA...ATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGTTTCTATCCATGCCTGTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
CDS-3UTR TCA 90 bp TGCACAGGCATGGATAGAAACAATAGATTTAGGGACCCAGTGCAACCTTTTAATCTTGGGGTTGAAGCCTaGGAGATGATTCCAAGAGTC +
Preference number: 4 (lower is better)
Translates to: CTGMDRNNRFRDPVQPFNLGVEA*EMIPRV
Trigger: GACTCTTGGAATCATCTCTCAGGCTTCAACCCCAAG...ATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGTTTCTATCCATGCCTGTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
3UTR CAA 72 bp CCTACCACAAACATTTCCAGTCAATCTGATCATATGTaGCTTCCCTTGGTAACCAGTGAACTTTCTACAGCG +
Preference number: 4 (lower is better)
Translates to: PTTNISSQSDHM*LPLVTSELSTA
Trigger: CGCTGTAGAAAGTTCACTGGTTACCAAGGGAAGCAACATATGATCAGATTGACTGGAAATGTTTGTGGTAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
3UTR CAA 72 bp TGTAAACTCCATTCCAATGGTAAGAAAATCATTGTTTaGAATGGTTCTCATCTATTTGCTTTGGGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: CKLHSNGKKIIV*NGSHLFALGPA
Trigger: AGCTGGCCCCAAAGCAAATAGATGAGAACCATTCAAAACAATGATTTTCTTACCATTGGAATGGAGTTTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS CCA 90 bp TCCAGCACACAGGGCAGGGAGTTCCCCCGATCCATCCTCCCCCTCTaGCCCTCTCCGTTCTGGAGACCTGGGCTCCCAGCCTCACTTCCC +
Preference number: 5 (lower is better)
Translates to: SSTQGREFPRSILPL*PSPFWRPGLPASLP
Trigger: GGGAAGTGAGGCTGGGAGCCCAGGTCTCCAGAACGGAGAGGGCCAGAGGGGGAGGATGGATCGGGGGAACTCCCTGCCCTGTGTGCTGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022695.16
CDS-3UTR CAA 90 bp GGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCCCCGCTGGGTCCCTGTGGTCCTaGGGGTTGAAGCCTGAGAGA +
Preference number: 5 (lower is better)
Translates to: GPRAAASPCTGQQTDLPAGSLWS*GLKPER
Trigger: TCTCTCAGGCTTCAACCCCAAGGACCACAGGGACCC...AGCGGGGAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp GCACAGGGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCTTCCACAGGGCCAGCTaGCCAAACTCCTCGGGAGAC +
Preference number: 5 (lower is better)
Translates to: AQGPRAAASPCTGQQTDLFHRAS*PNSSGD
Trigger: GTCTCCCGAGGAGTTTGGCAAGCTGGCCCTGTGGAA...GAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACCCTGTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp GGTCCCAGAGCTGCCGCCTCCCCCTGTACAGGACAGCAGACCGACCTCCCCGCTTGCGCTGCAGGAAACTaGGAGGATTCGATGATGAGG +
Preference number: 5 (lower is better)
Translates to: GPRAAASPCTGQQTDLPACAAGN*EDSMMR
Trigger: CCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCA...AGCGGGGAGGTCGGTCTGCTGTCCTGTACAGGGGGAGGCGGCAGCTCTGGGACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp CAGGGCCTCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATATCTTGGCTGGCTGGTaGGGGTCAGGGGGCTGCGCT +
Preference number: 5 (lower is better)
Translates to: QGLEAAEGRYCHGQGEPNILAGW*GSGGCA
Trigger: AGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGAT...ATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGAGGCCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp TGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCTGGGCTCGGTGGTCCCTGTTCCACAGGGCCAGCTaGCCAAACTCCTCGGGAGAC +
Preference number: 5 (lower is better)
Translates to: WDSPSHLREAEAWARWSLFHRAS*PNSSGD
Trigger: GTCTCCCGAGGAGTTTGGCAAGCTGGCCCTGTGGAA...CAGGGACCACCGAGCCCAGGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp TGGAAGGGTGTCCGGTCAGGCAGAGAGCGTGTTTTCCTCCGGATGGGCAATGACATCTTGGCTGGCTGGTaGGGGTCAGGGGGCTGCGCT +
Preference number: 5 (lower is better)
Translates to: WKGVRSGRERVFLRMGNDILAGW*GSGGCA
Trigger: AGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGAT...GTCATTGCCCATCCGGAGGAAAACACGCTCTCTGCCTGACCGGACACCCTTCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000227331.2
CDS-3UTR CAA 90 bp GGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTATCTTGGCTGGCTGGTaGGGGTCAGGGGGCTGCGCT +
Preference number: 5 (lower is better)
Translates to: GFAWRLVVVRRCVNSVSAILAGW*GSGGCA
Trigger: AGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGAT...AGCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp TCGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGAGCCGGGGTCCCTGTGGTCCTaGGGGTTGAAGCCTGAGAGA +
Preference number: 5 (lower is better)
Translates to: SKQQKEGTVTDRASRIEPGSLWS*GLKPER
Trigger: TCTCTCAGGCTTCAACCCCAAGGACCACAGGGACCC...CGGCTCGATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp CAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCAGCTGGCATCTTGGCTGGCTGGTaGGGGTCAGGGGGCTGCGCT +
Preference number: 5 (lower is better)
Translates to: QLEKHQAQVQETARSAAGILAGW*GSGGCA
Trigger: AGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGAT...GCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGATCTTGGCTGGCTGGTaGGGGTCAGGGGGCTGCGCT +
Preference number: 5 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGILAGW*GSGGCA
Trigger: AGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGAT...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp GGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGGCTATCTTGGCTGGCTGGTaGGGGTCAGGGGGCTGCGCT +
Preference number: 5 (lower is better)
Translates to: GPWTGARTVHPIWFCLEAILAGW*GSGGCA
Trigger: AGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGAT...AGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS CCA 90 bp CCGTTTCCTCCATTCTGTCTCCACAACGGCCAGCGACGGGGGACATaGCCAGTAGTCAGTCTCTATCTTGGCTGGCTGGTTGGGGTCAGG +
Preference number: 5 (lower is better)
Translates to: PFPPFCLHNGQRRGT*PVVSLYLGWLVGVR
Trigger: CCTGACCCCAACCAGCCAGCCAAGATAGAGACTGACTACTGGCCATGTCCCCCGTCGCTGGCCGTTGTGGAGACAGAATGGAGGAAACGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp CCGTTCCTGCTTCCTCTGCTCAGTGCTTGGCAGCCAGGTGGTAACCTCCTGGTAGGGTCCCTGTGGTCCTaGGGGTTGAAGCCTGAGAGA +
Preference number: 5 (lower is better)
Translates to: PFLLPLLSAWQPGGNLLVGSLWS*GLKPER
Trigger: TCTCTCAGGCTTCAACCCCAAGGACCACAGGGACCC...TACCAGGAGGTTACCACCTGGCTGCCAAGCACTGAGCAGAGGAAGCAGGAACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CAA 90 bp AGGGAAATGGTAAGGCCCCCTGGCCCATCGTGGGGAAGGAAGTCCACGCCTCGTCGGGGAGGTAAGAGGTaGCTTCTGCAGACGTTCCAT +
Preference number: 5 (lower is better)
Translates to: REMVRPPGPSWGRKSTPRRGGKR*LLQTFH
Trigger: ATGGAACGTCTGCAGAAGCAACCTCTTACCTCCCCG...ACGAGGCGTGGACTTCCTTCCCCACGATGGGCCAGGGGGCCTTACCATTTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000110984.4
ENSMUST00000228009.2
CDS-3UTR CAA 90 bp GGTCCCTGGACAGGTGCTAGAACGGTGCATCCTATCTGGTTTTGCCTGGAGGCTTTCCACAGGGCCAGCTaGCCAAACTCCTCGGGAGAC +
Preference number: 5 (lower is better)
Translates to: GPWTGARTVHPIWFCLEAFHRAS*PNSSGD
Trigger: GTCTCCCGAGGAGTTTGGCAAGCTGGCCCTGTGGAA...AGCCTCCAGGCAAAACCAGATAGGATGCACCGTTCTAGCACCTGTCCAGGGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS TCA 90 bp AAACTCCTCGGGAGACATGGCGAAGACCCTAGAGAAGTCCTCTGCTaGCAAATGCCTCTCAAGCCTCATGCGGTCCACACCCGGAGGCAG +
Preference number: 5 (lower is better)
Translates to: KLLGRHGEDPREVLC*QMPLKPHAVHTRRQ
Trigger: CTGCCTCCGGGTGTGGACCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGACTTCTCTAGGGTCTTCGCCATGTCTCCCGAGGAGTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS GCA 90 bp GTCAGTCTCTATCTTGGCTGGCTGGTTGGGGTCAGGGGGCTGCGCTaGAGGAAACTTGGAGGATTCGATGATGAGGTCCTCGATGAGGTG +
Preference number: 5 (lower is better)
Translates to: VSLYLGWLVGVRGLR*RKLGGFDDEVLDEV
Trigger: CACCTCATCGAGGACCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGATAGAGACTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp CTTCTGCCAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCTTCCACAGGGCCAGCTaGCCAAACTCCTCGGGAGAC +
Preference number: 5 (lower is better)
Translates to: LLPVREASGPSAGNCQECFHRAS*PNSSGD
Trigger: GTCTCCCGAGGAGTTTGGCAAGCTGGCCCTGTGGAA...GCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTGGCAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS GCA 90 bp TCGGGAGACATGGCGAAGACCCTAGAGAAGTCCTCTGCTGACAAATaGCTCTCAAGCCTCATGCGGTCCACACCCGGAGGCAGCTTAGTT +
Preference number: 5 (lower is better)
Translates to: SGDMAKTLEKSSADK*LSSLMRSTPGGSLV
Trigger: AACTAAGCTGCCTCCGGGTGTGGACCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGACTTCTCTAGGGTCTTCGCCATGTCTCCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp GCAGAGTGTCTACTTAGCACACACAAAGCCTGGGTTGGCTCCCTAGCCCCAAATGGGTCCCTGTGGTCCTaGGGGTTGAAGCCTGAGAGA +
Preference number: 5 (lower is better)
Translates to: AECLLSTHKAWVGSLAPNGSLWS*GLKPER
Trigger: TCTCTCAGGCTTCAACCCCAAGGACCACAGGGACCC...ATTTGGGGCTAGGGAGCCAACCCAGGCTTTGTGTGTGCTAAGTAGACACTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CAA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCTGCGCTGCAGGAAACTaGGAGGATTCGATGATGAGG +
Preference number: 5 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCCAAGN*EDSMMR
Trigger: CCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCA...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGCGGGGAGGTAAGAGGTaGCTTCTGCAGACGTTCCAT +
Preference number: 5 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGRGGKR*LLQTFH
Trigger: ATGGAACGTCTGCAGAAGCAACCTCTTACCTCCCCG...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000110984.4
ENSMUST00000228009.2
CDS-3UTR CAA 90 bp CAGTTAGAGAAGCATCAGGCCCAAGTGCAGGAAACTGCCAGGAGTGCAGCTGGCCGGGGAGGTAAGAGGTaGCTTCTGCAGACGTTCCAT +
Preference number: 5 (lower is better)
Translates to: QLEKHQAQVQETARSAAGRGGKR*LLQTFH
Trigger: ATGGAACGTCTGCAGAAGCAACCTCTTACCTCCCCG...GCCAGCTGCACTCCTGGCAGTTTCCTGCACTTGGGCCTGATGCTTCTCTAACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000110984.4
ENSMUST00000228009.2
CDS-3UTR CAA 90 bp GTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGACTTGCGCTGCAGGAAACTaGGAGGATTCGATGATGAGG +
Preference number: 5 (lower is better)
Translates to: VESTVGDAWQWRDLGAGTCAAGN*EDSMMR
Trigger: CCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCA...AGTCCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp GTATGGAAGGGTGTCCGGTCAGGCAGAGAGCGTGTTTTCCTCCGGATGGGCAATTGCGCTGCAGGAAACTaGGAGGATTCGATGATGAGG +
Preference number: 5 (lower is better)
Translates to: VWKGVRSGRERVFLRMGNCAAGN*EDSMMR
Trigger: CCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCA...ATTGCCCATCCGGAGGAAAACACGCTCTCTGCCTGACCGGACACCCTTCCATAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227331.2
CDS-3UTR CAA 90 bp TCTGTAGAGAGCACAGTAGGAGATGCATGGCAATGGAGGGACCTGGGAGCTGGGTGCGCTGCAGGAAACTaGGAGGATTCGATGATGAGG +
Preference number: 5 (lower is better)
Translates to: SVESTVGDAWQWRDLGAGCAAGN*EDSMMR
Trigger: CCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCA...CCCAGCTCCCAGGTCCCTCCATTGCCATGCATCTCCTACTGTGCTCTCTACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp AGAGAGGAACGGGACTATGGTATTGTCTCTAAGCCCACTCTGGCTCACATGAAAATCTTGGCTGGCTGGTaGGGGTCAGGGGGCTGCGCT +
Preference number: 5 (lower is better)
Translates to: REERDYGIVSKPTLAHMKILAGW*GSGGCA
Trigger: AGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGAT...TTTCATGTGAGCCAGAGTGGGCTTAGAGACAATACCATAGTCCCGTTCCTCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
CDS-3UTR CAA 90 bp CCTGCCTCCCGCTGCTCCCAGCCAGCAGAGGAAGAGGACACTGTAGGGAAGGGTATCATCTTTCCCAAGTaGGAAGTAACCTTACTGAGC +
Preference number: 5 (lower is better)
Translates to: PASRCSQPAEEEDTVGKGIIFPK*EVTLLS
Trigger: GCTCAGTAAGGTTACTTCCAACTTGGGAAAGATGAT...ACCCTTCCCTACAGTGTCCTCTTCCTCTGCTGGCTGGGAGCAGCGGGAGGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp ATGGAGGGACCTGGGAGCTGGGACTCTCCATCCCATCTTAGGGAGGCTGAGGCCATCATCTTTCCCAAGTaGGAAGTAACCTTACTGAGC +
Preference number: 5 (lower is better)
Translates to: MEGPGSWDSPSHLREAEAIIFPK*EVTLLS
Trigger: GCTCAGTAAGGTTACTTCCAACTTGGGAAAGATGAT...GGCCTCAGCCTCCCTAAGATGGGATGGAGAGTCCCAGCTCCCAGGTCCCTCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS CCA 90 bp GAAGGAAGCGAAGAGGATTTAGATGTTCCCGAATGCAAGGAGGTATaGAAGGGTGTCCGGTCAGGCAGAGAGCGTGTTTTCCTCCGGATG +
Preference number: 5 (lower is better)
Translates to: EGSEEDLDVPECKEV*KGVRSGRERVFLRM
Trigger: CATCCGGAGGAAAACACGCTCTCTGCCTGACCGGACACCCTTCCATACCTCCTTGCATTCGGGAACATCTAAATCCTCTTCGCTTCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp CGAAGCAGCAGAAGGAAGGTACTGTCACGGACAGGGCGAGCCGAATCGAGCCGAATCATCTTTCCCAAGTaGGAAGTAACCTTACTGAGC +
Preference number: 5 (lower is better)
Translates to: RSSRRKVLSRTGRAESSRIIFPK*EVTLLS
Trigger: GCTCAGTAAGGTTACTTCCAACTTGGGAAAGATGAT...TCGGCTCGATTCGGCTCGCCCTGTCCGTGACAGTACCTTCCTTCTGCTGCTTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp CAGGGAAGCAGCAGAGGGTGCCCCAATAAATTACATTCTGTAGAGAGCACAGTATTCCACAGGGCCAGCTaGCCAAACTCCTCGGGAGAC +
Preference number: 5 (lower is better)
Translates to: QGSSRGCPNKLHSVESTVFHRAS*PNSSGD
Trigger: GTCTCCCGAGGAGTTTGGCAAGCTGGCCCTGTGGAA...TACTGTGCTCTCTACAGAATGTAATTTATTGGGGCACCCTCTGCTGCTTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp TGGTTTTGCCTGGAGGCTGGTGGTGGTGAGGCGTTGTGTGAACAGCGTCTCTGCATCATCTTTCCCAAGTaGGAAGTAACCTTACTGAGC +
Preference number: 5 (lower is better)
Translates to: WFCLEAGGGEALCEQRLCIIFPK*EVTLLS
Trigger: GCTCAGTAAGGTTACTTCCAACTTGGGAAAGATGAT...GCAGAGACGCTGTTCACACAACGCCTCACCACCACCAGCCTCCAGGCAAAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp ACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTCCAAGCAGTTACCCCTCCGGGTCCCTGTGGTCCTaGGGGTTGAAGCCTGAGAGA +
Preference number: 5 (lower is better)
Translates to: TIDLGTQCNLLIPSSYPSGSLWS*GLKPER
Trigger: TCTCTCAGGCTTCAACCCCAAGGACCACAGGGACCC...GGAGGGGTAACTGCTTGGAATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
CDS-3UTR CAA 90 bp ATTATATACACGTACATATGTGGACAGACAGGACTGGAAGTGCAATTAGGTAGGATCTTGGCTGGCTGGTaGGGGTCAGGGGGCTGCGCT +
Preference number: 5 (lower is better)
Translates to: IIYTYICGQTGLEVQLGRILAGW*GSGGCA
Trigger: AGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGAT...CCTACCTAATTGCACTTCCAGTCCTGTCTGTCCACATATGTACGTGTATATAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp TGCACAGGCATGGATAGAAACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTTCCACAGGGCCAGCTaGCCAAACTCCTCGGGAGAC +
Preference number: 5 (lower is better)
Translates to: CTGMDRNNRFRDPVQPFNFHRAS*PNSSGD
Trigger: GTCTCCCGAGGAGTTTGGCAAGCTGGCCCTGTGGAA...ATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGTTTCTATCCATGCCTGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
CDS-3UTR CAA 90 bp ATTATATACACGTACATATGTGGACAGACAGGACTGGAAGTGCAATTAGGTAGGTTCCACAGGGCCAGCTaGCCAAACTCCTCGGGAGAC +
Preference number: 5 (lower is better)
Translates to: IIYTYICGQTGLEVQLGRFHRAS*PNSSGD
Trigger: GTCTCCCGAGGAGTTTGGCAAGCTGGCCCTGTGGAA...CCTACCTAATTGCACTTCCAGTCCTGTCTGTCCACATATGTACGTGTATATAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp TTAATTCCAAGCAGTTACCCCTCCCAGCATGATCACACACACAGTGGACAGGGAATCATCTTTCCCAAGTaGGAAGTAACCTTACTGAGC +
Preference number: 5 (lower is better)
Translates to: LIPSSYPSQHDHTHSGQGIIFPK*EVTLLS
Trigger: GCTCAGTAAGGTTACTTCCAACTTGGGAAAGATGAT...TCCCTGTCCACTGTGTGTGTGATCATGCTGGGAGGGGTAACTGCTTGGAATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS-3UTR CAA 90 bp TCCAGTCAATCTGATCATATGTTGCTTCCCTTGGTAACCAGTGAACTTTCTACATGCGCTGCAGGAAACTaGGAGGATTCGATGATGAGG +
Preference number: 5 (lower is better)
Translates to: SSQSDHMLLPLVTSELSTCAAGN*EDSMMR
Trigger: CCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCA...TGTAGAAAGTTCACTGGTTACCAAGGGAAGCAACATATGATCAGATTGACTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022694.17
CDS-3UTR CAA 90 bp TGCACAGGCATGGATAGAAACAATAGATTTAGGGACCCAGTGCAACCTTTTAATTGCGCTGCAGGAAACTaGGAGGATTCGATGATGAGG +
Preference number: 5 (lower is better)
Translates to: CTGMDRNNRFRDPVQPFNCAAGN*EDSMMR
Trigger: CCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCA...ATTAAAAGGTTGCACTGGGTCCCTAAATCTATTGTTTCTATCCATGCCTGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228295.2
CDS-3UTR CAA 90 bp CAGGGAAGCAGCAGAGGGTGCCCCAATAAATTACATTCTGTAGAGAGCACAGTAATCATCTTTCCCAAGTaGGAAGTAACCTTACTGAGC +
Preference number: 5 (lower is better)
Translates to: QGSSRGCPNKLHSVESTVIIFPK*EVTLLS
Trigger: GCTCAGTAAGGTTACTTCCAACTTGGGAAAGATGAT...TACTGTGCTCTCTACAGAATGTAATTTATTGGGGCACCCTCTGCTGCTTCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS GCA 72 bp CCCCGATCCATCCTCCCCCTCTGGCCCTCTCCGTTCTaGAGGCCTGGGCTCCCAGCCTCACTTCCCGATGGG +
Preference number: 6 (lower is better)
Translates to: PRSILPLWPSPF*RPGLPASLPDG
Trigger: CCCATCGGGAAGTGAGGCTGGGAGCCCAGGCCTGCAGAACGGAGAGGGCCAGAGGGGGAGGATGGATCGGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022694.17
ENSMUST00000228295.2
CDS CCA 72 bp CAGGGCAGGGAGTTCCCCCGATCCATCCTCCCCCTCTaGCCCTCTCCGTTCTGGAGACCTGGGCTCCCAGCC +
Preference number: 6 (lower is better)
Translates to: QGREFPRSILPL*PSPFWRPGLPA
Trigger: GGCTGGGAGCCCAGGTCTCCAGAACGGAGAGGGCCAGAGGGGGAGGATGGATCGGGGGAACTCCCTGCCCTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022695.16
CDS TCA 72 bp GGGTCCCTGTGGTCCTTGGGGTTGAAGCCTGAGAGATaGTTCCAAGAGTCCGGCTCTCCGCCCACACCTCTG +
Preference number: 6 (lower is better)
Translates to: GSLWSLGLKPER*FQESGSPPTPL
Trigger: CAGAGGTGTGGGCGGAGAGCCGGACTCTTGGAATCATCTCTCAGGCTTCAACCCCAAGGACCACAGGGACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS CAA 72 bp GGCTGGTTGGGGTCAGGGGGCTGCGCTGCAGGAAACTaGGAGGATTCGATGATGAGGTCCTCGATGAGGTGC +
Preference number: 6 (lower is better)
Translates to: GWLGSGGCAAGN*EDSMMRSSMRC
Trigger: GCACCTCATCGAGGACCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAACCAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000227331.2
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS CCA 72 bp ATGGCCAGTAGTCAGTCTCTATCTTGGCTGGCTGGTTaGGGTCAGGGGGCTGCGCTGCAGGAAACTTGGAGG +
Preference number: 6 (lower is better)
Translates to: MASSQSLSWLAG*GQGAALQETWR
Trigger: CCTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGATAGAGACTGACTACTGGCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS GCA 72 bp TATCTTGGCTGGCTGGTTGGGGTCAGGGGGCTGCGCTaGAGGAAACTTGGAGGATTCGATGATGAGGTCCTC +
Preference number: 6 (lower is better)
Translates to: YLGWLVGVRGLR*RKLGGFDDEVL
Trigger: GAGGACCTCATCATCGAATCCTCCAAGTTTCCTGCAGCGCAGCCCCCTGACCCCAACCAGCCAGCCAAGATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000227331.2
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS GCA 72 bp ATGGCGAAGACCCTAGAGAAGTCCTCTGCTGACAAATaGCTCTCAAGCCTCATGCGGTCCACACCCGGAGGC +
Preference number: 6 (lower is better)
Translates to: MAKTLEKSSADK*LSSLMRSTPGG
Trigger: GCCTCCGGGTGTGGACCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGACTTCTCTAGGGTCTTCGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS CCA 72 bp CCATTCTGTCTCCACAACGGCCAGCGACGGGGGACATaGCCAGTAGTCAGTCTCTATCTTGGCTGGCTGGTT +
Preference number: 6 (lower is better)
Translates to: PFCLHNGQRRGT*PVVSLYLGWLV
Trigger: AACCAGCCAGCCAAGATAGAGACTGACTACTGGCCATGTCCCCCGTCGCTGGCCGTTGTGGAGACAGAATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS TCA 72 bp GGGAGACATGGCGAAGACCCTAGAGAAGTCCTCTGCTaGCAAATGCCTCTCAAGCCTCATGCGGTCCACACC +
Preference number: 6 (lower is better)
Translates to: GRHGEDPREVLC*QMPLKPHAVHT
Trigger: GGTGTGGACCGCATGAGGCTTGAGAGGCATTTGTCAGCAGAGGACTTCTCTAGGGTCTTCGCCATGTCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS CCA 72 bp GTCGCTCAATGTCCAGGATGGCCTTGTCCTTGGGGATaGCAGCCAGATCCTTGTAGCCCAACACCTGGTTGT +
Preference number: 6 (lower is better)
Translates to: VAQCPGWPCPWG*QPDPCSPTPGC
Trigger: ACAACCAGGTGTTGGGCTACAAGGATCTGGCTGCCATCCCCAAGGACAAGGCCATCCTGGACATTGAGCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2
CDS CCA 72 bp GAAGAGGATTTAGATGTTCCCGAATGCAAGGAGGTATaGAAGGGTGTCCGGTCAGGCAGAGAGCGTGTTTTC +
Preference number: 6 (lower is better)
Translates to: EEDLDVPECKEV*KGVRSGRERVF
Trigger: GAAAACACGCTCTCTGCCTGACCGGACACCCTTCCATACCTCCTTGCATTCGGGAACATCTAAATCCTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022694.17
ENSMUST00000022695.16
ENSMUST00000110984.4
ENSMUST00000228001.2
ENSMUST00000228009.2
ENSMUST00000228295.2
ENSMUST00000228824.2