Pregenerated sensors for DMRTC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000011349Ensembl transcript IDs: ENSMUST00000011493.6
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGGCCTCCCGCTGCAGCTaGCGCTCCGAGGGGCCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: IKYQICSACSLSSLCPSEASRCS*RSEGPD Trigger: ATCTGGCCCCTCGGAGCGGCAGCTGCAGCGGGAGGC...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGCCCAGGAGGAGCTGGTaGGCCACAGGGGTGGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: IKYQICSACSLSSLCPSEPRRSW*ATGVEQ Trigger: CTGCTCCACCCCTGTGGCCCACCAGCTCCTCCTGGG...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGTCCCCCAGGAGGAGCTaGTGGGCCACAGGGGTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: IKYQICSACSLSSLCPSESPRRS*WATGVE Trigger: CTCCACCCCTGTGGCCCACCAGCTCCTCCTGGGGGA...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR TCA 90 bp | GACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCTCAGTCAAGAAAATACCGTCGGGAGGGTCCCATaGGTGGGCAGCCGGAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: DLVFKRATRIATLSQENTVGRVP*VGSRRE Trigger: CTCTCTCCGGCTGCCCACTCATGGGACCCTCCCGAC...GGTATTTTCTTGACTGAGGGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR GCA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGGTGCCTCCTGCTGCCTaGGCAAGGCCACTTGGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: IKYQICSACSLSSLCPSEVPPAA*ARPLGQ Trigger: CTGCCCAAGTGGCCTTGCGCAGGCAGCAGGAGGCAC...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCTGCGCAAGGCCACTTaGGCAGCCATGACCCTCCGA | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATLRKAT*AAMTLR Trigger: TCGGAGGGTCATGGCTGCCCAAGTGGCCTTGCGCAG...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCGGTGGGCCACAGGGGTaGAGCAGAGAGATCCAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATGGPQG*SREIQA Trigger: TGCCTGGATCTCTCTGCTCCACCCCTGTGGCCCACC...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR TCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCGCTCCATGGGGACTCTaGGGCTGGGGTGCTATGTTC | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATAPWGL*GWGAMF Trigger: GAACATAGCACCCCAGCCTCAGAGTCCCCATGGAGC...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR GCA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGAGCTGTGCCTCCTGCTaGCTGCGCAAGGCCACTTGG | + |
|
Preference number: 4 (lower is better) Translates to: IKYQICSACSLSSLCPSESCASC*LRKATW Trigger: CCAAGTGGCCTTGCGCAGGCAGCAGGAGGCACAGCT...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR GCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCTTCAGCTGTGCCTCCTaGTGCCTGCGCAAGGCCACT | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATFSCAS*CLRKAT Trigger: AGTGGCCTTGCGCAGGCAGCAGGAGGCACAGCTGAA...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCACTGGGTCGGAGAGGTaGGCCAACAGGCTGGAATCC | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATTGSER*ANRLES Trigger: GGATTCCAGCCTGTTGGCCCACCTCTCCGACCCAGT...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR TCA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGTGGAGCCGTCAGTACTaGGCGAGATCCTGGGCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: IKYQICSACSLSSLCPSEWSRQY*ARSWAG Trigger: ACCTGCCCAGGATCTCGCTCAGTACTGACGGCTCCA...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR GCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCAGTACCAGTGGGACTaGTCCATGGGGACTCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATQYQWD*SMGTLR Trigger: CCTCAGAGTCCCCATGGAGCAGTCCCACTGGTACTG...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCGGGTGTCAGTACCAGTaGGACTGCTCCATGGGGACT | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATGCQYQ*DCSMGT Trigger: AGTCCCCATGGAGCAGTCCCACTGGTACTGACACCC...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR GCA 90 bp | GACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCTCAGTCAAGAAAATACCGCAGCCGGAGAGAGGTaGCAGGGTCAAAGCCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: DLVFKRATRIATLSQENTAAGER*QGQSQE Trigger: TTCCTGGCTTTGACCCTGGCACCTCTCTCCGGCTGC...GGTATTTTCTTGACTGAGGGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR GCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCCCAGACGCCCAATGTaGAGAGAGACAGAGGAACCT | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATPRRPM*RETEEP Trigger: AGGTTCCTCTGTCTCTCTGCACATTGGGCGTCTGGG...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGGGGACAGCAGGTTCTTaGCACAGCAAGCGGCATACC | + |
|
Preference number: 4 (lower is better) Translates to: IKYQICSACSLSSLCPSEGTAGS*HSKRHT Trigger: GGTATGCCGCTTGCTGTGCCAAGAACCTGCTGTCCC...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | GACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCTCAGTCAAGAAAATACCGGTGGGCCAACAGGCTaGAATCCTCTTCCCCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: DLVFKRATRIATLSQENTGGPTG*NPLPPG Trigger: TCCTGGGGGAAGAGGATTCCAGCCTGTTGGCCCACC...GGTATTTTCTTGACTGAGGGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR TCA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGCCTTTCATCAGTCCCTaGGCCAGGTGCCTTTTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: IKYQICSACSLSSLCPSEPFISP*ARCLFS Trigger: GCTGAAAAGGCACCTGGCTCAGGGACTGATGAAAGG...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR TCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCAGAGTTGAACATGTGTaGGGCAGGTTAGGGGGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATRVEHV*GRLGGP Trigger: AGGACCCCCTAACCTGCCTCACACATGTTCAACTCT...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR GCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCGAAGAGAGTCTGGGGTaGCACAGGACTGGAGTATCA | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATEESLG*HRTGVS Trigger: TGATACTCCAGTCCTGTGGCACCCCAGACTCTCTTC...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCTCAGCAGAACAGTGGTaGAGAGCAGCCGTTTCACTG | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATSAEQW*RAAVSL Trigger: CAGTGAAACGGCTGCTCTCCACCACTGTTCTGCTGA...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCTGGAGAGCGACTGACTaGTCTCCTGGGAATAAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATWRATD*SPGNKL Trigger: GAGCTTATTCCCAGGAGACCAGTCAGTCGCTCTCCA...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | GACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCTCAGTCAAGAAAATACCAGAGACAGAGGAACCTaGACTGGGTCGGAGAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: DLVFKRATRIATLSQENTRDRGT*TGSERW Trigger: CCACCTCTCCGACCCAGTCCAGGTTCCTCTGTCTCT...GGTATTTTCTTGACTGAGGGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR TCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCTCCGACGTTCCAGGATaGGGACACATTTGTGACACT | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATSDVPG*GHICDT Trigger: AGTGTCACAAATGTGTCCTCATCCTGGAACGTCGGA...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGGAGTCAGCAGAACAGTaGTGGAGAGCAGCCGTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: IKYQICSACSLSSLCPSEESAEQ*WRAAVS Trigger: TGAAACGGCTGCTCTCCACCACTGTTCTGCTGACTC...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CCA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGTTGTGTCCCTTGAGATaGGCTGTGACCCCATGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: IKYQICSACSLSSLCPSELCPLR*AVTPWL Trigger: CAACCATGGGGTCACAGCCCATCTCAAGGGACACAA...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR TCA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCTGGAGTATCAGAGTTaGACATGTGTGAGGCAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: QLPLLGDLVFKRATRIATLEYQS*TCVRQV Trigger: AACCTGCCTCACACATGTTCAACTCTGATACTCCAG...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR GCA 90 bp | GACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCTCAGTCAAGAAAATACCAGCTTTCAGAGGGGTTaGCCCTTTCATCAGTCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: DLVFKRATRIATLSQENTSFQRG*PFHQSL Trigger: CAGGGACTGATGAAAGGGGCAACCCCTCTGAAAGCT...GGTATTTTCTTGACTGAGGGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS GCA 90 bp | GAGTCTTTCAGACCTACAAGGGCCTCAGCTGCCTCCCGCTGCAGCTaGCGCTCCGAGGGGCCAGATGTCCAGGCCAGGCAGGAGGCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: ESFRPTRASAASRCS*RSEGPDVQARQEAP Trigger: TGGAGCCTCCTGCCTGGCCTGGACATCTGGCCCCTCGGAGCGGCAGCTGCAGCGGGAGGCAGCTGAGGCCCTTGTAGGTCTGAAAGACTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS TCA 90 bp | GCCGTCAGTACTGAGCGAGATCCTGGGCAGGTCGGGAGGGTCCCATaGGTGGGCAGCCGGAGAGAGGTGCCAGGGTCAAAGCCAGGAAAA | + |
|
Preference number: 5 (lower is better) Translates to: AVSTERDPGQVGRVP*VGSRREVPGSKPGK Trigger: TTTTCCTGGCTTTGACCCTGGCACCTCTCTCCGGCTGCCCACTCATGGGACCCTCCCGACCTGCCCAGGATCTCGCTCAGTACTGACGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS CCA 90 bp | GACCCCATGGTTGCGACAGCGGGCACAGGTTGGAGAGCGACTGACTaGTCTCCTGGGAATAAGCTCTGTACTCTGGGGCACTCTGGCCTC | + |
|
Preference number: 5 (lower is better) Translates to: DPMVATAGTGWRATD*SPGNKLCTLGHSGL Trigger: GAGGCCAGAGTGCCCCAGAGTACAGAGCTTATTCCCAGGAGACCAGTCAGTCGCTCTCCAACCTGTGCCCGCTGTCGCAACCATGGGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS CCA 90 bp | GTTGGAGAGCGACTGACTGGTCTCCTGGGAATAAGCTCTGTACTCTaGGGCACTCTGGCCTCGTCGGCTGGGGAAGAGTCAGCAGAACAG | + |
|
Preference number: 5 (lower is better) Translates to: VGERLTGLLGISSVL*GTLASSAGEESAEQ Trigger: CTGTTCTGCTGACTCTTCCCCAGCCGACGAGGCCAGAGTGCCCCAGAGTACAGAGCTTATTCCCAGGAGACCAGTCAGTCGCTCTCCAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS CCA 90 bp | CTTGAGATGGGCTGTGACCCCATGGTTGCGACAGCGGGCACAGGTTaGAGAGCGACTGACTGGTCTCCTGGGAATAAGCTCTGTACTCTG | + |
|
Preference number: 5 (lower is better) Translates to: LEMGCDPMVATAGTG*RATDWSPGNKLCTL Trigger: CAGAGTACAGAGCTTATTCCCAGGAGACCAGTCAGTCGCTCTCCAACCTGTGCCCGCTGTCGCAACCATGGGGTCACAGCCCATCTCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CAA 90 bp | GACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCTCAGTCAAGAAAATACCCCTGCGCAAGGCCACTaGGGCAGCCATGACCCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: DLVFKRATRIATLSQENTPAQGH*GSHDPP Trigger: CGGAGGGTCATGGCTGCCCAAGTGGCCTTGCGCAGG...GGTATTTTCTTGACTGAGGGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CAA 90 bp | GACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCTCAGTCAAGAAAATACCCCACTGGAGGTGGCATaGAGAGGCCTGGGGGCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: DLVFKRATRIATLSQENTPLEVA*RGLGAA Trigger: GGCTGCCCCCAGGCCTCTCAATGCCACCTCCAGTGG...GGTATTTTCTTGACTGAGGGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CAA 90 bp | ATAAAATACCAAATATGCAGTGCCTGCAGTTTGTCGTCTCTTTGTCCCAGTGAGAGGCGCTTGTGTCCCTaGAGATGGGCTGTGACCCCA | + |
|
Preference number: 5 (lower is better) Translates to: IKYQICSACSLSSLCPSERRLCP*RWAVTP Trigger: TGGGGTCACAGCCCATCTCAAGGGACACAAGCGCCT...CTCACTGGGACAAAGAGACGACAAACTGCAGGCACTGCATATTTGGTATTTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CAA 90 bp | CAACTGCCTTTATTGGGGGACTTAGTATTTAAACGGGCTACAAGAATAGCCACCAGGGACAGCAGGTTCTaGGCACAGCAAGCGGCATAC | + |
|
Preference number: 5 (lower is better) Translates to: QLPLLGDLVFKRATRIATRDSRF*AQQAAY Trigger: GTATGCCGCTTGCTGTGCCAAGAACCTGCTGTCCCT...GGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTCCCCCAATAAAGGCAGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS-3UTR CAA 90 bp | GACTTAGTATTTAAACGGGCTACAAGAATAGCCACCCTCAGTCAAGAAAATACCAAGAGGCAGAGGCGCTaGTGTCCCTTGAGATGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: DLVFKRATRIATLSQENTKRQRR*CPLRWA Trigger: AGCCCATCTCAAGGGACACAAGCGCCTCTGCCTCTT...GGTATTTTCTTGACTGAGGGTGGCTATTCTTGTAGCCCGTTTAAATACTAAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS CCA 72 bp | AGCGAGATCCTGGGCAGGTCGGGAGGGTCCCATGAGTaGGCAGCCGGAGAGAGGTGCCAGGGTCAAAGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: SEILGRSGGSHE*AAGERCQGQSQ Trigger: CTGGCTTTGACCCTGGCACCTCTCTCCGGCTGCCCACTCATGGGACCCTCCCGACCTGCCCAGGATCTCGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS TCA 72 bp | ACTGAGCGAGATCCTGGGCAGGTCGGGAGGGTCCCATaGGTGGGCAGCCGGAGAGAGGTGCCAGGGTCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: TERDPGQVGRVP*VGSRREVPGSK Trigger: CTTTGACCCTGGCACCTCTCTCCGGCTGCCCACTCATGGGACCCTCCCGACCTGCCCAGGATCTCGCTCAGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS TCA 72 bp | TCCTTGGGGCTCCCCAGAAAGTGGAGCCGTCAGTACTaGGCGAGATCCTGGGCAGGTCGGGAGGGTCCCATG | + |
|
Preference number: 6 (lower is better) Translates to: SLGLPRKWSRQY*ARSWAGREGPM Trigger: CATGGGACCCTCCCGACCTGCCCAGGATCTCGCTCAGTACTGACGGCTCCACTTTCTGGGGAGCCCCAAGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS CCA 72 bp | GGCTGTGACCCCATGGTTGCGACAGCGGGCACAGGTTaGAGAGCGACTGACTGGTCTCCTGGGAATAAGCTC | + |
|
Preference number: 6 (lower is better) Translates to: GCDPMVATAGTG*RATDWSPGNKL Trigger: GAGCTTATTCCCAGGAGACCAGTCAGTCGCTCTCCAACCTGTGCCCGCTGTCGCAACCATGGGGTCACAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS CCA 72 bp | GTTGCGACAGCGGGCACAGGTTGGAGAGCGACTGACTaGTCTCCTGGGAATAAGCTCTGTACTCTGGGGCAC | + |
|
Preference number: 6 (lower is better) Translates to: VATAGTGWRATD*SPGNKLCTLGH Trigger: GTGCCCCAGAGTACAGAGCTTATTCCCAGGAGACCAGTCAGTCGCTCTCCAACCTGTGCCCGCTGTCGCAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS TCA 72 bp | AGAGTCTGGGGTGCCACAGGACTGGAGTATCAGAGTTaGACATGTGTGAGGCAGGTTAGGGGGTCCTTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: RVWGATGLEYQS*TCVRQVRGSLG Trigger: CCCCAAGGACCCCCTAACCTGCCTCACACATGTTCAACTCTGATACTCCAGTCCTGTGGCACCCCAGACTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||
| CDS CCA 72 bp | AAGCCAGGAAAAGGATGTAGAGGGACAGCAGGTTCTTaGCACAGCAAGCGGCATACCACTGGAGGTGGCATT | + |
|
Preference number: 6 (lower is better) Translates to: KPGKGCRGTAGS*HSKRHTTGGGI Trigger: AATGCCACCTCCAGTGGTATGCCGCTTGCTGTGCCAAGAACCTGCTGTCCCTCTACATCCTTTTCCTGGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011493.6 |
||