Pregenerated sensors for DMRTC1C2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067561Ensembl transcript IDs: ENSMUST00000087896.11, ENSMUST00000087899.4, ENSMUST00000120314.8
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTGAAACTTCTCCACATACAAGTACAGGGGTGCCTGGGCACATATaGAATCACAGAACAAATGCAAACAATGGTATACTAACCCACTCA | + |
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Preference number: 1 (lower is better) Translates to: VETSPHTSTGVPGHI*NHRTNANNGILTHS Trigger: TGAGTGGGTTAGTATACCATTGTTTGCATTTGTTCTGTGATTGCATATGTGCCCAGGCACCCCTGTACTTGTATGTGGAGAAGTTTCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087896.11 ENSMUST00000120314.8 |
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| 3UTR GCA 90 bp | AAGCCTAGACACAAGTTGAAACTTCTCCACATACAAGTACAGGGGTaGCTGGGCACATATGCAATCACAGAACAAATGCAAACAATGGTA | + |
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Preference number: 1 (lower is better) Translates to: KPRHKLKLLHIQVQG*LGTYAITEQMQTMV Trigger: TACCATTGTTTGCATTTGTTCTGTGATTGCATATGTGCCCAGGCACCCCTGTACTTGTATGTGGAGAAGTTTCAACTTGTGTCTAGGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087896.11 ENSMUST00000120314.8 |
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| 3UTR CAA 90 bp | AGACTGGTCACATTAAATTGCACAGTGCTATCCACAGAAGATACATaGAATAGCATCAGCTTCCAAAGGAATAAGGGATGGGGGTACAAG | + |
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Preference number: 2 (lower is better) Translates to: RLVTLNCTVLSTEDT*NSISFQRNKGWGYK Trigger: CTTGTACCCCCATCCCTTATTCCTTTGGAAGCTGATGCTATTCAATGTATCTTCTGTGGATAGCACTGTGCAATTTAATGTGACCAGTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087896.11 ENSMUST00000120314.8 |
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| 3UTR CAA 90 bp | ACCAATGCTTTATTATTTGTTCAAATATACAAGCCTAGACACAAGTaGAAACTTCTCCACATACAAGTACAGGGGTGCCTGGGCACATAT | + |
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Preference number: 2 (lower is better) Translates to: TNALLFVQIYKPRHK*KLLHIQVQGCLGTY Trigger: ATATGTGCCCAGGCACCCCTGTACTTGTATGTGGAGAAGTTTCAACTTGTGTCTAGGCTTGTATATTTGAACAAATAATAAAGCATTGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087896.11 ENSMUST00000120314.8 |
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| 3UTR CCA 72 bp | GAAGTGGAGCTGGCCAGTGGATCTGAATCACACGGATaGGCGGGGAGGCTTCACTGCTCCAACTTCAAGCAA | + |
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Preference number: 3 (lower is better) Translates to: EVELASGSESHG*AGRLHCSNFKQ Trigger: TTGCTTGAAGTTGGAGCAGTGAAGCCTCCCCGCCCATCCGTGTGATTCAGATCCACTGGCCAGCTCCACTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087896.11 ENSMUST00000120314.8 |
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| 3UTR TCA 72 bp | CAAGCTAAGGAACAGATCTACATTATGAGAAGAGTCTaGAAGCTTATTAAATGCCCGAAGGCTTACAAAGCA | + |
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Preference number: 3 (lower is better) Translates to: QAKEQIYIMRRV*KLIKCPKAYKA Trigger: TGCTTTGTAAGCCTTCGGGCATTTAATAAGCTTTCAGACTCTTCTCATAATGTAGATCTGTTCCTTAGCTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087896.11 ENSMUST00000120314.8 |
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| 3UTR TCA 72 bp | AACATACTATGCAAGCTAAGGAACAGATCTACATTATaGGAAGAGTCTGAAAGCTTATTAAATGCCCGAAGG | + |
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Preference number: 3 (lower is better) Translates to: NILCKLRNRSTL*EESESLLNARR Trigger: CCTTCGGGCATTTAATAAGCTTTCAGACTCTTCTCATAATGTAGATCTGTTCCTTAGCTTGCATAGTATGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087896.11 ENSMUST00000120314.8 |
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| CDS GCA 72 bp | CACTTGAGACCCGTGGGGGCTCTCCTCCTGGGGGCTTaGTTGAGGCAGGTCTTCAGGCTGGGACACAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: HLRPVGALLLGA*LRQVFRLGHRV Trigger: AACCCTGTGTCCCAGCCTGAAGACCTGCCTCAAGCAAGCCCCCAGGAGGAGAGCCCCCACGGGTCTCAAGTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000087896.11 ENSMUST00000087899.4 ENSMUST00000120314.8 |
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| CDS CAA 72 bp | ACACTTGAGACCCGTGGGGGCTCTCCTCCTGGGGGCTaGCTTGAGGCAGGTCTTCAGGCTGGGACACAGGGT | + |
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Preference number: 6 (lower is better) Translates to: TLETRGGSPPGG*LEAGLQAGTQG Trigger: ACCCTGTGTCCCAGCCTGAAGACCTGCCTCAAGCAAGCCCCCAGGAGGAGAGCCCCCACGGGTCTCAAGTGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000087896.11 ENSMUST00000087899.4 ENSMUST00000120314.8 |
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| CDS GCA 72 bp | ATCTGGCGTCTCTTTCCTCGTGCACTATACCCCTTTTaGTCAGAACCCACAGCCAGCAGGGCCTCGCCGTGG | + |
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Preference number: 6 (lower is better) Translates to: IWRLFPRALYPF*SEPTASRASPW Trigger: CCACGGCGAGGCCCTGCTGGCTGTGGGTTCTGAGCAAAAGGGGTATAGTGCACGAGGAAAGAGACGCCAGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000087896.11 ENSMUST00000087899.4 ENSMUST00000120314.8 |
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| CDS GCA 72 bp | AGGCAGGTCTTCAGGCTGGGACACAGGGTTCTCCTTTaGAGGGCGACCTCTTCCTTTGGTAGGGGTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: RQVFRLGHRVLL*RATSSFGRGLL Trigger: AAGAAGACCCCTACCAAAGGAAGAGGTCGCCCTGCAAAGGAGAACCCTGTGTCCCAGCCTGAAGACCTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087896.11 ENSMUST00000087899.4 ENSMUST00000120314.8 |
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| CDS CAA 72 bp | AGGATAGGTTCCATTACAGGTGCTGCTGCTCCAGTCTaGTTCCCCATGTTACATTCCGAGGTGGAGGGCCGG | + |
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Preference number: 6 (lower is better) Translates to: RIGSITGAAAPV*FPMLHSEVEGR Trigger: CCGGCCCTCCACCTCGGAATGTAACATGGGGAACAAGACTGGAGCAGCAGCACCTGTAATGGAACCTATCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087896.11 ENSMUST00000087899.4 ENSMUST00000120314.8 |
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