Pregenerated sensors for DMRTC1C1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067562Ensembl transcript IDs: ENSMUST00000118218.8, ENSMUST00000131451.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGCCCTTAAGTCCAAGAAGAAGGTGCACTCAACAGGAAGTGAAGTaGAGCTGGCCAGTGGATCTGAATCACACGGATGGGCGGGGAGGC | + |
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Preference number: 1 (lower is better) Translates to: GPLSPRRRCTQQEVK*SWPVDLNHTDGRGG Trigger: GCCTCCCCGCCCATCCGTGTGATTCAGATCCACTGGCCAGCTCCACTTCACTTCCTGTTGAGTGCACCTTCTTCTTGGACTTAAGGGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| 3UTR CCA 90 bp | TTAAGTCCAAGAAGAAGGTGCACTCAACAGGAAGTGAAGTGGAGCTaGCCAGTGGATCTGAATCACACGGATGGGCGGGGAGGCTTCACT | + |
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Preference number: 1 (lower is better) Translates to: LSPRRRCTQQEVKWS*PVDLNHTDGRGGFT Trigger: AGTGAAGCCTCCCCGCCCATCCGTGTGATTCAGATCCACTGGCCAGCTCCACTTCACTTCCTGTTGAGTGCACCTTCTTCTTGGACTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| 3UTR CCA 90 bp | AGGGGTGCCTGGGCACATATGCAATCACAGAACAAATGCAAACAATaGTATACTAACCCACTCAGAGCCCCACCGACAGACTGGTCACAT | + |
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Preference number: 1 (lower is better) Translates to: RGAWAHMQSQNKCKQ*YTNPLRAPPTDWSH Trigger: ATGTGACCAGTCTGTCGGTGGGGCTCTGAGTGGGTTAGTATACCATTGTTTGCATTTGTTCTGTGATTGCATATGTGCCCAGGCACCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| 3UTR TCA 90 bp | CCAATGCTTTATTATTTGTTCAAATATACAAGCCTAGACACAAGTTaGAACTTCTCCACATACAAGTACAGGGGTGCCTGGGCACATATG | + |
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Preference number: 1 (lower is better) Translates to: PMLYYLFKYTSLDTS*NFSTYKYRGAWAHM Trigger: CATATGTGCCCAGGCACCCCTGTACTTGTATGTGGAGAAGTTTCAACTTGTGTCTAGGCTTGTATATTTGAACAAATAATAAAGCATTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| 3UTR CCA 90 bp | ACAGAAGATACATTGAATAGCATCAGCTTCCAAAGGAATAAGGGATaGGGGTACAAGAACATACTATGCAAGCTAAGGAACAGATCTACA | + |
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Preference number: 1 (lower is better) Translates to: TEDTLNSISFQRNKG*GYKNILCKLRNRST Trigger: TGTAGATCTGTTCCTTAGCTTGCATAGTATGTTCTTGTACCCCCATCCCTTATTCCTTTGGAAGCTGATGCTATTCAATGTATCTTCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| 3UTR TCA 90 bp | GGGTACAAGAACATACTATGCAAGCTAAGGAACAGATCTACATTATaGGAAGAGTCTGAAAGCTTATTAAATGCCCGAAGGCTTACAAAG | + |
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Preference number: 1 (lower is better) Translates to: GYKNILCKLRNRSTL*EESESLLNARRLTK Trigger: CTTTGTAAGCCTTCGGGCATTTAATAAGCTTTCAGACTCTTCTCATAATGTAGATCTGTTCCTTAGCTTGCATAGTATGTTCTTGTACCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| 3UTR GCA 72 bp | AGGGGTGCCTGGGCACATATGCAATCACAGAACAAATaGAAACAATGGTATACTAACCCACTCAGAGCCCCA | + |
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Preference number: 3 (lower is better) Translates to: RGAWAHMQSQNK*KQWYTNPLRAP Trigger: TGGGGCTCTGAGTGGGTTAGTATACCATTGTTTGCATTTGTTCTGTGATTGCATATGTGCCCAGGCACCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| 3UTR GCA 72 bp | ACTCAGAGCCCCACCGACAGACTGGTCACATTAAATTaGACAGTGCTATCCACAGAAGATACATTGAATAGC | + |
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Preference number: 3 (lower is better) Translates to: TQSPTDRLVTLN*TVLSTEDTLNS Trigger: GCTATTCAATGTATCTTCTGTGGATAGCACTGTGCAATTTAATGTGACCAGTCTGTCGGTGGGGCTCTGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| 3UTR GCA 72 bp | CACAAGTTGAAACTTCTCCACATACAAGTACAGGGGTaGCTGGGCACATATGCAATCACAGAACAAATGCAA | + |
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Preference number: 3 (lower is better) Translates to: HKLKLLHIQVQG*LGTYAITEQMQ Trigger: TTGCATTTGTTCTGTGATTGCATATGTGCCCAGGCACCCCTGTACTTGTATGTGGAGAAGTTTCAACTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| CDS-3UTR TCA 90 bp | TCTGAATCACACGGATGGGCGGGGAGGCTTCACTGCTCCAACTTCAAGCAAGACGGCACCGGAGCCCTGTaGCTCCAGTGGATGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: SESHGWAGRLHCSNFKQDGTGAL*LQWMVV Trigger: CACCACCATCCACTGGAGTCACAGGGCTCCGGTGCC...GTCTTGCTTGAAGTTGGAGCAGTGAAGCCTCCCCGCCCATCCGTGTGATTCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| CDS-3UTR TCA 90 bp | ACAGGAAGTGAAGTGGAGCTGGCCAGTGGATCTGAATCACACGGATGGGCGGGGCAGGAGGACCATACTTaGGCATGGGTTGGACTCAGC | + |
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Preference number: 4 (lower is better) Translates to: TGSEVELASGSESHGWAGQEDHT*AWVGLS Trigger: GCTGAGTCCAACCCATGCTCAAGTATGGTCCTCCTG...CCCCGCCCATCCGTGTGATTCAGATCCACTGGCCAGCTCCACTTCACTTCCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| CDS-3UTR TCA 90 bp | TGCACAGTGCTATCCACAGAAGATACATTGAATAGCATCAGCTTCCAAAGGAATTCCTGGGGGCTTGCTTaGGGCAGGTCTTCAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: CTVLSTEDTLNSISFQRNSWGLA*GRSSGW Trigger: CCAGCCTGAAGACCTGCCTCAAGCAAGCCCCCAGGA...ATTCCTTTGGAAGCTGATGCTATTCAATGTATCTTCTGTGGATAGCACTGTGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| CDS GCA 90 bp | GGTAGTCGAATCTGGCGTCTCTTTCCTCGTGCACTATACCCCTTTTaGTCAGAACCCACAGCCAGCAGGGCCTCGCCGTGGTCCCTGACT | + |
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Preference number: 5 (lower is better) Translates to: GSRIWRLFPRALYPF*SEPTASRASPWSLT Trigger: AGTCAGGGACCACGGCGAGGCCCTGCTGGCTGTGGGTTCTGAGCAAAAGGGGTATAGTGCACGAGGAAAGAGACGCCAGATTCGACTACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118218.8 ENSMUST00000131451.2 |
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| CDS GCA 90 bp | GCTTGCTTGAGGCAGGTCTTCAGGCTGGGACACAGGGTTCTCCTTTaGAGGGCGACCTCTTCCTTTGGTAGGGGTCTTCTTGGCCTGATC | + |
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Preference number: 5 (lower is better) Translates to: ACLRQVFRLGHRVLL*RATSSFGRGLLGLI Trigger: GATCAGGCCAAGAAGACCCCTACCAAAGGAAGAGGTCGCCCTGCAAAGGAGAACCCTGTGTCCCAGCCTGAAGACCTGCCTCAAGCAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118218.8 ENSMUST00000131451.2 |
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| CDS GCA 90 bp | GCCAGGGTGATTTGCACGTCCTCTGAGGATAGGTTCCATTACAGGTaGTGCTGCTCCAGTCTTGTTCCCCATGTTACATTCCGAGGTGGA | + |
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Preference number: 5 (lower is better) Translates to: ARVICTSSEDRFHYR*CCSSLVPHVTFRGG Trigger: TCCACCTCGGAATGTAACATGGGGAACAAGACTGGAGCAGCAGCACCTGTAATGGAACCTATCCTCAGAGGACGTGCAAATCACCCTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118218.8 ENSMUST00000131451.2 |
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| CDS CCA 72 bp | CCCACAGCCAGCAGGGCCTCGCCGTGGTCCCTGACTTaGGTCCGGGTGCCACAACTGTGGCCTCTGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: PTASRASPWSLT*VRVPQLWPLPG Trigger: CCCTGGCAGAGGCCACAGTTGTGGCACCCGGACCCAAGTCAGGGACCACGGCGAGGCCCTGCTGGCTGTGGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118218.8 ENSMUST00000131451.2 |
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| CDS CAA 90 bp | TTGCTCAGAACCCACAGCCAGCAGGGCCTCGCCGTGGTCCCTGACTaGGGTCCGGGTGCCACAACTGTGGCCTCTGCCAGGGTGATTTGC | + |
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Preference number: 6 (lower is better) Translates to: LLRTHSQQGLAVVPD*GPGATTVASARVIC Trigger: GCAAATCACCCTGGCAGAGGCCACAGTTGTGGCACCCGGACCCAAGTCAGGGACCACGGCGAGGCCCTGCTGGCTGTGGGTTCTGAGCAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118218.8 ENSMUST00000131451.2 |
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| CDS TCA 72 bp | AGGAACCGAGGCCTGGTCAGAGGCACCGGAGCCCTGTaGCTCCAGTGGATGGTGGTGATCGGTGGAGGTACG | + |
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Preference number: 6 (lower is better) Translates to: RNRGLVRGTGAL*LQWMVVIGGGT Trigger: CGTACCTCCACCGATCACCACCATCCACTGGAGTCACAGGGCTCCGGTGCCTCTGACCAGGCCTCGGTTCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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| CDS CAA 90 bp | GCAATACACTTGAGACCCGTGGGGGCTCTCCTCCTGGGGGCTTGCTaGAGGCAGGTCTTCAGGCTGGGACACAGGGTTCTCCTTTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: AIHLRPVGALLLGAC*RQVFRLGHRVLLCR Trigger: CCTGCAAAGGAGAACCCTGTGTCCCAGCCTGAAGACCTGCCTCAAGCAAGCCCCCAGGAGGAGAGCCCCCACGGGTCTCAAGTGTATTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000118218.8 ENSMUST00000131451.2 |
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| CDS CAA 90 bp | GCCAGCAATACACTTGAGACCCGTGGGGGCTCTCCTCCTGGGGGCTaGCTTGAGGCAGGTCTTCAGGCTGGGACACAGGGTTCTCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: ASNTLETRGGSPPGG*LEAGLQAGTQGSPL Trigger: CAAAGGAGAACCCTGTGTCCCAGCCTGAAGACCTGCCTCAAGCAAGCCCCCAGGAGGAGAGCCCCCACGGGTCTCAAGTGTATTGCTGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000118218.8 ENSMUST00000131451.2 |
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| CDS TCA 72 bp | GGGCGACCTCTTCCTTTGGTAGGGGTCTTCTTGGCCTaGTCGAAGGGTTTGCGGGGGAGAGTCGTTCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: GRPLPLVGVFLA*SKGLRGRVVLG Trigger: ACCAAGAACGACTCTCCCCCGCAAACCCTTCGATCAGGCCAAGAAGACCCCTACCAAAGGAAGAGGTCGCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118218.8 ENSMUST00000131451.2 |
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| CDS TCA 72 bp | GTGATCGGTGGAGGTACGTGGCAGGAGGACCATACTTaGGCATGGGTTGGACTCAGCAAAAGCCCCGTGAAT | + |
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Preference number: 6 (lower is better) Translates to: VIGGGTWQEDHT*AWVGLSKSPVN Trigger: ATTCACGGGGCTTTTGCTGAGTCCAACCCATGCTCAAGTATGGTCCTCCTGCCACGTACCTCCACCGATCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118218.8 |
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