Pregenerated sensors for DMRTC1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073027Ensembl transcript IDs: ENSMUST00000101324.9, ENSMUST00000113609.8, ENSMUST00000118842.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAAACCAAGGCCAGGCTaGCTACATGAGAACTCATCC | + |
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Preference number: 2 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRKPRPG*LHENSS Trigger: GGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTT...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| 3UTR-3UTR CCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGGTTCAAAGTCATGATTaGCTGTATACTGAAACCAAG | + |
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Preference number: 2 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRVQSHD*LYTETK Trigger: CTTGGTTTCAGTATACAGCCAATCATGACTTTGAAC...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCACGCATCAGAGTGCCTTaGGAACTTCCCTCCCGTGGG | + |
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Preference number: 4 (lower is better) Translates to: VMIGCILKPRPGWLHENSRIRVP*ELPSRG Trigger: CCCACGGGAGGGAAGTTCCCAAGGCACTCTGATGCG...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR TCA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCACAGACTTCCAGTCAGTaGGGCAGAGTTGGCAGACCG | + |
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Preference number: 4 (lower is better) Translates to: VMIGCILKPRPGWLHENSQTSSQ*GRVGRP Trigger: CGGTCTGCCAACTCTGCCTCACTGACTGGAAGTCTG...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGCGCATCAGAGTGCCTTaGGAACTTCCCTCCCGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRRIRVP*ELPSRG Trigger: CCCACGGGAGGGAAGTTCCCAAGGCACTCTGATGCG...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR TCA 90 bp | AAAGTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACCAGACTTCCAGTCAGTaGGGCAGAGTTGGCAGACCG | + |
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Preference number: 4 (lower is better) Translates to: KVMIGCILKPRPGWLHENQTSSQ*GRVGRP Trigger: CGGTCTGCCAACTCTGCCTCACTGACTGGAAGTCTG...GTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR TCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGCAGACTTCCAGTCAGTaGGGCAGAGTTGGCAGACCG | + |
|
Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRQTSSQ*GRVGRP Trigger: CGGTCTGCCAACTCTGCCTCACTGACTGGAAGTCTG...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATTTTGGGGCACTCACTaGAGGCAAGAGCCCATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: VMIGCILKPRPGWLHENSFWGTH*RQEPML Trigger: CAGCATGGGCTCTTGCCTGCAGTGAGTGCCCCAAAA...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 |
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| CDS-3UTR GCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGCGGCTAGGAGGCTGCTaGCCTCTCTTTCCAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRRLGGC*PLFPAE Trigger: TTCTGCTGGAAAGAGAGGGCAGCAGCCTCCTAGCCG...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | AAAGTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACCGGCTAGGAGGCTGCTaGCCTCTCTTTCCAGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: KVMIGCILKPRPGWLHENRLGGC*PLFPAE Trigger: TTCTGCTGGAAAGAGAGGGCAGCAGCCTCCTAGCCG...GTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | TGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCCCAAAAGTTACGCATCAGAGTGCCTTaGGAACTTCCCTCCCGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: CILKPRPGWLHENSSQKLRIRVP*ELPSRG Trigger: CCCACGGGAGGGAAGTTCCCAAGGCACTCTGATGCG...TAACTTTTGGGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCACTGCTGCTGGGTCACTaGAGCATAAGGCAGAACGGA | + |
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Preference number: 4 (lower is better) Translates to: VMIGCILKPRPGWLHENSLLLGH*SIRQNG Trigger: TCCGTTCTGCCTTATGCTCCAGTGACCCAGCAGCAG...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCAGTGAGGCAGAGTTaGCAGACCGTGGTGGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: VMIGCILKPRPGWLHENSSVRQS*QTVVAH Trigger: ATGTGCCACCACGGTCTGCCAACTCTGCCTCACTGA...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGTTTTGGGGCACTCACTaGAGGCAAGAGCCCATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRFWGTH*RQEPML Trigger: CAGCATGGGCTCTTGCCTGCAGTGAGTGCCCCAAAA...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 |
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| CDS-3UTR GCA 90 bp | AAAGTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACGGGGGCCTGGTCTCATaGTTGTGCATAGTGCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: KVMIGCILKPRPGWLHENGGLVS*LCIVLS Trigger: AGAGAGCACTATGCACAAGCATGAGACCAGGCCCCC...GTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGACTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGGGGGGCCTGGTCTCATaGTTGTGCATAGTGCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRGGLVS*LCIVLS Trigger: AGAGAGCACTATGCACAAGCATGAGACCAGGCCCCC...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 50% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR TCA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATTCTTTATCACTCCTTaGTCCAGGGGCCTCTTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: VMIGCILKPRPGWLHENSFFITP*SRGLFS Trigger: GCTGAAGAGGCCCCTGGATCAAGGAGTGATAAAGAA...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 |
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| CDS-3UTR CCA 90 bp | TGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCCCAAAAGTTACTGCTGCTGGGTCACTaGAGCATAAGGCAGAACGGA | + |
|
Preference number: 4 (lower is better) Translates to: CILKPRPGWLHENSSQKLLLLGH*SIRQNG Trigger: TCCGTTCTGCCTTATGCTCCAGTGACCCAGCAGCAG...TAACTTTTGGGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGTTTTGGGCCTGGCAATaGGACCGAGGTTCTTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRFWAWQ*DRGSLL Trigger: CAGCAAAGAACCTCGGTCCCATTGCCAGGCCCAAAA...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR TCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGTTCTTTATCACTCCTTaGTCCAGGGGCCTCTTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRFFITP*SRGLFS Trigger: GCTGAAGAGGCCCCTGGATCAAGGAGTGATAAAGAA...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 |
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| CDS-3UTR TCA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCACTCTTGCCATGCTTGTaGAATTTAGGAGTACAGGCC | + |
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Preference number: 4 (lower is better) Translates to: VMIGCILKPRPGWLHENSLLPCL*NLGVQA Trigger: GGCCTGTACTCCTAAATTTCACAAGCATGGCAAGAG...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | AAAGTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACGAAATCACAGATTGCTaGTGCTGGGTCACTGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: KVMIGCILKPRPGWLHENEITDC*CWVTGA Trigger: TGCTCCAGTGACCCAGCAGCAGCAATCTGTGATTTC...GTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGACTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGGAAATCACAGATTGCTaGTGCTGGGTCACTGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIREITDC*CWVTGA Trigger: TGCTCCAGTGACCCAGCAGCAGCAATCTGTGATTTC...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | AACACTTTTCACTTTAGACATGAAACAGGATACCAAACAGGCAGTGCTGTAGTGCGGCTAGGAGGCTGCTaGCCTCTCTTTCCAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: NTFHFRHETGYQTGSAVVRLGGC*PLFPAE Trigger: TTCTGCTGGAAAGAGAGGGCAGCAGCCTCCTAGCCG...CACTACAGCACTGCCTGTTTGGTATCCTGTTTCATGTCTAAAGTGAAAAGTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | TGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCCCAAAAGTTATTTTGGGCCTGGCAATaGGACCGAGGTTCTTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: CILKPRPGWLHENSSQKLFWAWQ*DRGSLL Trigger: CAGCAAAGAACCTCGGTCCCATTGCCAGGCCCAAAA...TAACTTTTGGGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR TCA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCAGTAGAAGAGGATCAGTaGCTGCATGGTTTTTCACGA | + |
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Preference number: 4 (lower is better) Translates to: VMIGCILKPRPGWLHENSVEEDQ*LHGFSR Trigger: TCGTGAAAAACCATGCAGTCACTGATCCTCTTCTAC...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | AACACTTTTCACTTTAGACATGAAACAGGATACCAAACAGGCAGTGCTGTAGTGGGGGGCCTGGTCTCATaGTTGTGCATAGTGCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: NTFHFRHETGYQTGSAVVGGLVS*LCIVLS Trigger: AGAGAGCACTATGCACAAGCATGAGACCAGGCCCCC...CACTACAGCACTGCCTGTTTGGTATCCTGTTTCATGTCTAAAGTGAAAAGTGTT 47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | TGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCCCAAAAGTTACACTTGAGTATCTTTTaGGCCTGGCAATGGGACCGA | + |
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Preference number: 4 (lower is better) Translates to: CILKPRPGWLHENSSQKLHLSIF*AWQWDR Trigger: TCGGTCCCATTGCCAGGCCCAAAAGATACTCAAGTG...TAACTTTTGGGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | AAAGTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTTTGCCATGCCTTTTTaGAGAGGCAGAAACAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: KVMIGCILKPRPGWLHENFAMPF*RGRNRR Trigger: CCTCCTGTTTCTGCCTCTCCAAAAAGGCATGGCAAA...GTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGACTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | CAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAGTTCAAAGTCATCAGTGAGGCAGAGTTaGCAGACCGTGGTGGCACAT | + |
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Preference number: 4 (lower is better) Translates to: QSYNPRTLEVEKIRSSKSSVRQS*QTVVAH Trigger: ATGTGCCACCACGGTCTGCCAACTCTGCCTCACTGA...TGACTTTGAACTCCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR TCA 90 bp | TGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCCCAAAAGTTACTCTTGCCATGCTTGTaGAATTTAGGAGTACAGGCC | + |
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Preference number: 4 (lower is better) Translates to: CILKPRPGWLHENSSQKLLLPCL*NLGVQA Trigger: GGCCTGTACTCCTAAATTTCACAAGCATGGCAAGAG...TAACTTTTGGGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | TGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCCCAAAAGTTATTTGCCATGCCTTTTTaGAGAGGCAGAAACAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: CILKPRPGWLHENSSQKLFAMPF*RGRNRR Trigger: CCTCCTGTTTCTGCCTCTCCAAAAAGGCATGGCAAA...TAACTTTTGGGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR TCA 90 bp | TGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCCCAAAAGTTAGTAGAAGAGGATCAGTaGCTGCATGGTTTTTCACGA | + |
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Preference number: 4 (lower is better) Translates to: CILKPRPGWLHENSSQKLVEEDQ*LHGFSR Trigger: TCGTGAAAAACCATGCAGTCACTGATCCTCTTCTAC...TAACTTTTGGGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | CAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAGTTCAAAGTCAGAAATCACAGATTGCTaGTGCTGGGTCACTGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: QSYNPRTLEVEKIRSSKSEITDC*CWVTGA Trigger: TGCTCCAGTGACCCAGCAGCAGCAATCTGTGATTTC...TGACTTTGAACTCCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | AAAGTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACAAGAGGATCAGTGACTaGATGGTTTTTCACGATCAC | + |
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Preference number: 4 (lower is better) Translates to: KVMIGCILKPRPGWLHENKRISD*MVFHDH Trigger: GTGATCGTGAAAAACCATGCAGTCACTGATCCTCTT...GTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGACTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGTTGGTCATTTTGCCATaGCTTTTTGGAGAGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRLVILP*LFGEAE Trigger: TTCTGCCTCTCCAAAAAGGCATGGCAAAATGACCAA...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | AACACTTTTCACTTTAGACATGAAACAGGATACCAAACAGGCAGTGCTGTAGTGGCAGGCAAGAGCCCATaGTGTTCCAAGAAGGTATTG | + |
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Preference number: 4 (lower is better) Translates to: NTFHFRHETGYQTGSAVVAGKSP*CSKKVL Trigger: CAATACCTTCTTGGAACAGCATGGGCTCTTGCCTGC...CACTACAGCACTGCCTGTTTGGTATCCTGTTTCATGTCTAAAGTGAAAAGTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113609.8 |
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| CDS-3UTR CCA 90 bp | CAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAGTTCAAAGTCACACTTGAGTATCTTTTaGGCCTGGCAATGGGACCGA | + |
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Preference number: 4 (lower is better) Translates to: QSYNPRTLEVEKIRSSKSHLSIF*AWQWDR Trigger: TCGGTCCCATTGCCAGGCCCAAAAGATACTCAAGTG...TGACTTTGAACTCCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCACAGGAAGATAGCTATTaGTCATTTTGCCATGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: VMIGCILKPRPGWLHENSQEDSY*SFCHAF Trigger: AAAGGCATGGCAAAATGACCAATAGCTATCTTCCTG...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR TCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGACCGAGGTTCTTTGCTaGATAAGAAATCACAGATTG | + |
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Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRTEVLC*IRNHRL Trigger: CAATCTGTGATTTCTTATTCAGCAAAGAACCTCGGT...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | TGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCCCAAAAGTTATTGGTCATTTTGCCATaGCTTTTTGGAGAGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: CILKPRPGWLHENSSQKLLVILP*LFGEAE Trigger: TTCTGCCTCTCCAAAAAGGCATGGCAAAATGACCAA...TAACTTTTGGGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | AAAGTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACCAGGAAGATAGCTATTaGTCATTTTGCCATGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: KVMIGCILKPRPGWLHENQEDSY*SFCHAF Trigger: AAAGGCATGGCAAAATGACCAATAGCTATCTTCCTG...GTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGCAGGAAGATAGCTATTaGTCATTTTGCCATGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRQEDSY*SFCHAF Trigger: AAAGGCATGGCAAAATGACCAATAGCTATCTTCCTG...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | AACACTTTTCACTTTAGACATGAAACAGGATACCAAACAGGCAGTGCTGTAGTGAAGAGGATCAGTGACTaGATGGTTTTTCACGATCAC | + |
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Preference number: 4 (lower is better) Translates to: NTFHFRHETGYQTGSAVVKRISD*MVFHDH Trigger: GTGATCGTGAAAAACCATGCAGTCACTGATCCTCTT...CACTACAGCACTGCCTGTTTGGTATCCTGTTTCATGTCTAAAGTGAAAAGTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | CAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAGTTCAAAGTCAAAGAGGATCAGTGACTaGATGGTTTTTCACGATCAC | + |
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Preference number: 4 (lower is better) Translates to: QSYNPRTLEVEKIRSSKSKRISD*MVFHDH Trigger: GTGATCGTGAAAAACCATGCAGTCACTGATCCTCTT...TGACTTTGAACTCCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | CAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAGTTCAAAGTCAAGCTATTGGTCATTTTaGCATGCCTTTTTGGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: QSYNPRTLEVEKIRSSKSSYWSF*HAFLER Trigger: CCTCTCCAAAAAGGCATGGCAAAATGACCAATAGCT...TGACTTTGAACTCCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR GCA 90 bp | AACACTTTTCACTTTAGACATGAAACAGGATACCAAACAGGCAGTGCTGTAGTGAGCTATTGGTCATTTTaGCATGCCTTTTTGGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: NTFHFRHETGYQTGSAVVSYWSF*HAFLER Trigger: CCTCTCCAAAAAGGCATGGCAAAATGACCAATAGCT...CACTACAGCACTGCCTGTTTGGTATCCTGTTTCATGTCTAAAGTGAAAAGTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CCA 90 bp | CAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAGTTCAAAGTCACACTGTGACATTTGTTaGCCTGAAAGAGGCAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: QSYNPRTLEVEKIRSSKSHCDIC*PERGRN Trigger: ATTTCTGCCTCTTTCAGGCCAACAAATGTCACAGTG...TGACTTTGAACTCCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113609.8 |
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| CDS-3UTR CAA 90 bp | TGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCCCAAAAGTTAGTCAGTGAGGCAGAGTaGGCAGACCGTGGTGGCACA | + |
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Preference number: 5 (lower is better) Translates to: CILKPRPGWLHENSSQKLVSEAE*ADRGGT Trigger: TGTGCCACCACGGTCTGCCAACTCTGCCTCACTGAC...TAACTTTTGGGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCAGGCCTGGTCTCATGCTaGTGCATAGTGCTCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: VMIGCILKPRPGWLHENSGLVSC*CIVLSF Trigger: GAAAGAGAGCACTATGCACAAGCATGAGACCAGGCC...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS GCA 90 bp | CAGAACCTTGTGTTCCATGTCCAGGAAGATAGCTATTGGTCATTTTaGCATGCCTTTTTGGAGAGGCAGAAACAGGAGGAGGCAGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: QNLVFHVQEDSYWSF*HAFLERQKQEEAEE Trigger: CTCCTCTGCCTCCTCCTGTTTCTGCCTCTCCAAAAAGGCATGGCAAAATGACCAATAGCTATCTTCCTGGACATGGAACACAAGGTTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | AACACTTTTCACTTTAGACATGAAACAGGATACCAAACAGGCAGTGCTGTAGTGGTCAGTGAGGCAGAGTaGGCAGACCGTGGTGGCACA | + |
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Preference number: 5 (lower is better) Translates to: NTFHFRHETGYQTGSAVVVSEAE*ADRGGT Trigger: TGTGCCACCACGGTCTGCCAACTCTGCCTCACTGAC...CACTACAGCACTGCCTGTTTGGTATCCTGTTTCATGTCTAAAGTGAAAAGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCAATTCTTTATCACTCCTaGATCCAGGGGCCTCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: VMIGCILKPRPGWLHENSILYHS*IQGPLQ Trigger: CTGAAGAGGCCCCTGGATCAAGGAGTGATAAAGAAT...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 |
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| CDS-3UTR CAA 90 bp | GGCATGGTAGCACAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGATTCTTTATCACTCCTaGATCCAGGGGCCTCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: GMVAQSYNPRTLEVEKIRILYHS*IQGPLQ Trigger: CTGAAGAGGCCCCTGGATCAAGGAGTGATAAAGAAT...CCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTGTGCTACCATGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 |
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| CDS-3UTR CAA 90 bp | GTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATGGGACCGAGGTTCTTaGCTGAATAAGAAATCACAG | + |
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Preference number: 5 (lower is better) Translates to: VMIGCILKPRPGWLHENSWDRGS*LNKKSQ Trigger: CTGTGATTTCTTATTCAGCAAAGAACCTCGGTCCCA...TGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | CAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAGTTCAAAGTCAGGCCTGGTCTCATGCTaGTGCATAGTGCTCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: QSYNPRTLEVEKIRSSKSGLVSC*CIVLSF Trigger: GAAAGAGAGCACTATGCACAAGCATGAGACCAGGCC...TGACTTTGAACTCCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | AACACTTTTCACTTTAGACATGAAACAGGATACCAAACAGGCAGTGCTGTAGTGGGCCTGGTCTCATGCTaGTGCATAGTGCTCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: NTFHFRHETGYQTGSAVVGLVSC*CIVLSF Trigger: GAAAGAGAGCACTATGCACAAGCATGAGACCAGGCC...CACTACAGCACTGCCTGTTTGGTATCCTGTTTCATGTCTAAAGTGAAAAGTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | AAAGTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTGGGACCGAGGTTCTTaGCTGAATAAGAAATCACAG | + |
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Preference number: 5 (lower is better) Translates to: KVMIGCILKPRPGWLHENWDRGS*LNKKSQ Trigger: CTGTGATTTCTTATTCAGCAAAGAACCTCGGTCCCA...GTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | AAAGTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTTTTCACGATCACACTaGAGTATCTTTTGGGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: KVMIGCILKPRPGWLHENFSRSH*SIFWAW Trigger: CCAGGCCCAAAAGATACTCAAGTGTGATCGTGAAAA...GTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS GCA 90 bp | GGTCTCATGCTTGTGCATAGTGCTCTCTTTCCAATTGGGTTTTTCTaGTTCAACAGCCAACCTCTTGCCATGCTTGTGAAATTTAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: GLMLVHSALFPIGFF*FNSQPLAMLVKFRS Trigger: ACTCCTAAATTTCACAAGCATGGCAAGAGGTTGGCTGTTGAAGCAGAAAAACCCAATTGGAAAGAGAGCACTATGCACAAGCATGAGACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS CCA 90 bp | CATGGTTTTTCACGATCACACTTGAGTATCTTTTGGGCCTGGCAATaGGACCGAGGTTCTTTGCTGAATAAGAAATCACAGATTGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: HGFSRSHLSIFWAWQ*DRGSLLNKKSQIAA Trigger: AGCAGCAATCTGTGATTTCTTATTCAGCAAAGAACCTCGGTCCCATTGCCAGGCCCAAAAGATACTCAAGTGTGATCGTGAAAAACCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | AAAGTCATGATTGGCTGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACGTGCTCTCTTTCCAATaGGGTTTTTCTGCTTCAACA | + |
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Preference number: 5 (lower is better) Translates to: KVMIGCILKPRPGWLHENVLSFQ*GFSAST Trigger: TGTTGAAGCAGAAAAACCCAATTGGAAAGAGAGCAC...GTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACAGCCAATCATGACTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | TGTATACTGAAACCAAGGCCAGGCTGGCTACATGAGAACTCATCCCAAAAGTTATTTTCACGATCACACTaGAGTATCTTTTGGGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: CILKPRPGWLHENSSQKLFSRSH*SIFWAW Trigger: CCAGGCCCAAAAGATACTCAAGTGTGATCGTGAAAA...TAACTTTTGGGATGAGTTCTCATGTAGCCAGCCTGGCCTTGGTTTCAGTATACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | CAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAGTTCAAAGTCATGGGACCGAGGTTCTTaGCTGAATAAGAAATCACAG | + |
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Preference number: 5 (lower is better) Translates to: QSYNPRTLEVEKIRSSKSWDRGS*LNKKSQ Trigger: CTGTGATTTCTTATTCAGCAAAGAACCTCGGTCCCA...TGACTTTGAACTCCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | CAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAGTTCAAAGTCATTTTCACGATCACACTaGAGTATCTTTTGGGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: QSYNPRTLEVEKIRSSKSFSRSH*SIFWAW Trigger: CCAGGCCCAAAAGATACTCAAGTGTGATCGTGAAAA...TGACTTTGAACTCCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | AACACTTTTCACTTTAGACATGAAACAGGATACCAAACAGGCAGTGCTGTAGTGGTGCTCTCTTTCCAATaGGGTTTTTCTGCTTCAACA | + |
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Preference number: 5 (lower is better) Translates to: NTFHFRHETGYQTGSAVVVLSFQ*GFSAST Trigger: TGTTGAAGCAGAAAAACCCAATTGGAAAGAGAGCAC...CACTACAGCACTGCCTGTTTGGTATCCTGTTTCATGTCTAAAGTGAAAAGTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS-3UTR CAA 90 bp | CAGTCCTATAATCCCAGGACTTTAGAAGTGGAGAAAATCAGGAGTTCAAAGTCAGTGCTCTCTTTCCAATaGGGTTTTTCTGCTTCAACA | + |
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Preference number: 5 (lower is better) Translates to: QSYNPRTLEVEKIRSSKSVLSFQ*GFSAST Trigger: TGTTGAAGCAGAAAAACCCAATTGGAAAGAGAGCAC...TGACTTTGAACTCCTGATTTTCTCCACTTCTAAAGTCCTGGGATTATAGGACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS TCA 72 bp | GGTGAAGAAGGACATGCAGTCCAGACTTCCAGTCAGTaGGGCAGAGTTGGCAGACCGTGGTGGCACATAGCG | + |
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Preference number: 6 (lower is better) Translates to: GEEGHAVQTSSQ*GRVGRPWWHIA Trigger: CGCTATGTGCCACCACGGTCTGCCAACTCTGCCTCACTGACTGGAAGTCTGGACTGCATGTCCTTCTTCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS GCA 72 bp | TTCCTCTGCCACTCTACGGCAGCAGCAACAGAATCGTaGTTGGTGGCATTAGGGACCTGTGGCTGCAGTAGA | + |
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Preference number: 6 (lower is better) Translates to: FLCHSTAAATES*LVALGTCGCSR Trigger: TCTACTGCAGCCACAGGTCCCTAATGCCACCAAGCACGATTCTGTTGCTGCTGCCGTAGAGTGGCAGAGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS CAA 72 bp | CTCTGCCACTCTACGGCAGCAGCAACAGAATCGTGCTaGGTGGCATTAGGGACCTGTGGCTGCAGTAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: LCHSTAAATESC*VALGTCGCSRR Trigger: TCTTCTACTGCAGCCACAGGTCCCTAATGCCACCAAGCACGATTCTGTTGCTGCTGCCGTAGAGTGGCAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS CAA 72 bp | GCTAGGAGGCTGCTGCCCTCTCTTTCCAGCAGAACCTaGTGTTCCATGTCCAGGAAGATAGCTATTGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: ARRLLPSLSSRT*CSMSRKIAIGH Trigger: ATGACCAATAGCTATCTTCCTGGACATGGAACACAAGGTTCTGCTGGAAAGAGAGGGCAGCAGCCTCCTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS TCA 72 bp | AATTTAGGAGTACAGGCCATATTCTTTATCACTCCTTaGTCCAGGGGCCTCTTCAGCCTTGTGCCCTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: NLGVQAIFFITP*SRGLFSLVPCS Trigger: GGAGCAGGGCACAAGGCTGAAGAGGCCCCTGGATCAAGGAGTGATAAAGAATATGGCCTGTACTCCTAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 |
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| CDS TCA 72 bp | TCTTTTGGGCCTGGCAATGGGACCGAGGTTCTTTGCTaGATAAGAAATCACAGATTGCTGCTGCTGGGTCAC | + |
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Preference number: 6 (lower is better) Translates to: SFGPGNGTEVLC*IRNHRLLLLGH Trigger: GTGACCCAGCAGCAGCAATCTGTGATTTCTTATTCAGCAAAGAACCTCGGTCCCATTGCCAGGCCCAAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS CAA 90 bp | TCACACTTGAGTATCTTTTGGGCCTGGCAATGGGACCGAGGTTCTTaGCTGAATAAGAAATCACAGATTGCTGCTGCTGGGTCACTGGAG | + |
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Preference number: 6 (lower is better) Translates to: SHLSIFWAWQWDRGS*LNKKSQIAAAGSLE Trigger: CTCCAGTGACCCAGCAGCAGCAATCTGTGATTTCTTATTCAGCAAAGAACCTCGGTCCCATTGCCAGGCCCAAAAGATACTCAAGTGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS CAA 72 bp | AGTATCTTTTGGGCCTGGCAATGGGACCGAGGTTCTTaGCTGAATAAGAAATCACAGATTGCTGCTGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: SIFWAWQWDRGS*LNKKSQIAAAG Trigger: CCCAGCAGCAGCAATCTGTGATTTCTTATTCAGCAAAGAACCTCGGTCCCATTGCCAGGCCCAAAAGATACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS GCA 72 bp | GTGTTCCATGTCCAGGAAGATAGCTATTGGTCATTTTaGCATGCCTTTTTGGAGAGGCAGAAACAGGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: VFHVQEDSYWSF*HAFLERQKQEE Trigger: CTCCTCCTGTTTCTGCCTCTCCAAAAAGGCATGGCAAAATGACCAATAGCTATCTTCCTGGACATGGAACAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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| CDS CCA 72 bp | TCACGATCACACTTGAGTATCTTTTGGGCCTGGCAATaGGACCGAGGTTCTTTGCTGAATAAGAAATCACAG | + |
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Preference number: 6 (lower is better) Translates to: SRSHLSIFWAWQ*DRGSLLNKKSQ Trigger: CTGTGATTTCTTATTCAGCAAAGAACCTCGGTCCCATTGCCAGGCCCAAAAGATACTCAAGTGTGATCGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101324.9 ENSMUST00000113609.8 ENSMUST00000118842.2 |
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