Pregenerated sensors for DMRT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042372Ensembl transcript IDs: ENSMUST00000048935.6
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATAGTCGGTTGGCAATCGAACCACTCCCTAAGGTTTCCAGTGTCCTaGGGAATTCTCTTTTACAAAATGGCATTCAAGTGTACTATGCCA | + |
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Preference number: 1 (lower is better) Translates to: IVGWQSNHSLRFPVS*GILFYKMAFKCTMP Trigger: TGGCATAGTACACTTGAATGCCATTTTGTAAAAGAGAATTCCTCAGGACACTGGAAACCTTAGGGAGTGGTTCGATTGCCAACCGACTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| 3UTR CAA 90 bp | GTTATGTTTTTATTGCTAATGTATAGACTATCAAGCACAGTCACTTaGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGACTCTCCT | + |
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Preference number: 2 (lower is better) Translates to: VMFLLLMYRLSSTVT*SNRRQEYTVLVDSP Trigger: AGGAGAGTCCACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAGTCTATACATTAGCAATAAAAACATAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| 3UTR-3UTR CAA 90 bp | CTAAATCCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTATCAAGCACAGTCACTTaGTCAAACAGGAGGCAAGAG | + |
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Preference number: 3 (lower is better) Translates to: LNPQSRAIWHFPVECRELSSTVT*SNRRQE Trigger: CTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGA...TAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGGATTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR GCA 90 bp | GTCTCTGAAAACGGCCCGAGCTTAAACAAGAGCCTGCCTGCTCAGTCCGCTCTAGAGGGTCCTCGGTGGTaGGGGAGGAGAGCACGGGCG | + |
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Preference number: 4 (lower is better) Translates to: VSENGPSLNKSLPAQSALEGPRW*GRRARA Trigger: CGCCCGTGCTCTCCTCCCGCACCACCGAGGACCCTC...TAGAGCGGACTGAGCAGGCAGGCTCTTGTTTAAGCTCGGGCCGTTTTCAGAGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR GCA 90 bp | GTCTCTGAAAACGGCCCGAGCTTAAACAAGAGCCTGCCTGCTCAGTCCGCTCTAGACCTCAGCTGGTACTaGTGCTGCAGCGTCATGGTG | + |
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Preference number: 4 (lower is better) Translates to: VSENGPSLNKSLPAQSALDLSWY*CCSVMV Trigger: CACCATGACGCTGCAGCAGCAGTACCAGCTGAGGTC...TAGAGCGGACTGAGCAGGCAGGCTCTTGTTTAAGCTCGGGCCGTTTTCAGAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | CTAAATCCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTAGGCAGCGCGCGCACTTaGGCGTGCGCTGCAAGGGCG | + |
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Preference number: 4 (lower is better) Translates to: LNPQSRAIWHFPVECRELGSART*ACAARA Trigger: CGCCCTTGCAGCGCACGCCCAAGTGCGCGCGCTGCC...TAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGGATTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR GCA 90 bp | CCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTAAATAAGGAGGCTGGCGACGACTaGGAGGCGGTAGCGGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: PQSRAIWHFPVECRELNKEAGDD*EAVAAV Trigger: CACCGCCGCTACCGCCTCGCAGTCGTCGCCAGCCTC...CTTATTTAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR GCA 90 bp | CTAAATCCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTAAGGCTCTCGTTGGCCTaGTGCCTGCGCAGCGCCACC | + |
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Preference number: 4 (lower is better) Translates to: LNPQSRAIWHFPVECRELRLSLA*CLRSAT Trigger: GGTGGCGCTGCGCAGGCAGCAGGCCAACGAGAGCCT...TAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGGATTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR GCA 90 bp | GTCTCTGAAAACGGCCCGAGCTTAAACAAGAGCCTGCCTGCTCAGTCCGCTCTATGTTGTCCGTGGAACTaGTGTCCCCAACTCTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: VSENGPSLNKSLPAQSALCCPWN*CPQLSL Trigger: AAGAGAGAGTTGGGGACAGCAGTTCCACGGACAACA...TAGAGCGGACTGAGCAGGCAGGCTCTTGTTTAAGCTCGGGCCGTTTTCAGAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR GCA 90 bp | CCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTAAATAAGTGGGGGAAAGGATGCTaGAGGGGCACGGCCAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: PQSRAIWHFPVECRELNKWGKGC*RGTAKG Trigger: CCCCTTGGCCGTGCCCCTGCAGCATCCTTTCCCCCA...CTTATTTAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | CCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTAAATAAGGCACGGCCAAGGGGTTaGGGACCACGTTGCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: PQSRAIWHFPVECRELNKARPRG*GPRCWS Trigger: ACTCCAGCAACGTGGTCCCCAACCCCTTGGCCGTGC...CTTATTTAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | CCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTAAATAAGGGGTACCGAGGTGGCTaGGGGAAAGGATGCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: PQSRAIWHFPVECRELNKGYRGG*GKGCCR Trigger: CCTGCAGCATCCTTTCCCCCAGCCACCTCGGTACCC...CTTATTTAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR TCA 90 bp | ACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGACTCTCCTCCCGCTGCCGCTCGATaGTCAGGATGCACTTCTCGC | + |
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Preference number: 4 (lower is better) Translates to: TVTLSNRRQEYTVLVDSPPAAAR*SGCTSR Trigger: GCGAGAAGTGCATCCTGATCATCGAGCGGCAGCGGG...AGGAGAGTCCACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | CTATCAAGCACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGTCTCCAGGCTCTCGTTaGCCTGCTGCCTGCGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: LSSTVTLSNRRQEYTVLVSPGSR*PAACAA Trigger: CGCTGCGCAGGCAGCAGGCCAACGAGAGCCTGGAGA...CACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | GTCTCTGAAAACGGCCCGAGCTTAAACAAGAGCCTGCCTGCTCAGTCCGCTCTAAAAAAGGGGCTCGACTaGTTTCTGGCCAAAGTATTC | + |
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Preference number: 4 (lower is better) Translates to: VSENGPSLNKSLPAQSALKKGLD*FLAKVF Trigger: GAATACTTTGGCCAGAAACCAGTCGAGCCCCTTTTT...TAGAGCGGACTGAGCAGGCAGGCTCTTGTTTAAGCTCGGGCCGTTTTCAGAGAC 51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | GTCTCTGAAAACGGCCCGAGCTTAAACAAGAGCCTGCCTGCTCAGTCCGCTCTACATCCTCTGTGTAGATaGACTGCTTTGTCACGATTG | + |
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Preference number: 4 (lower is better) Translates to: VSENGPSLNKSLPAQSALHPLCR*TALSRL Trigger: CAATCGTGACAAAGCAGTCCATCTACACAGAGGATG...TAGAGCGGACTGAGCAGGCAGGCTCTTGTTTAAGCTCGGGCCGTTTTCAGAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | CTATCAAGCACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGTGGCTCTGCTCAGCGTaGTACTTGGGGCTGTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: LSSTVTLSNRRQEYTVLVWLCSA*YLGLSG Trigger: CCCCGACAGCCCCAAGTACCACGCTGAGCAGAGCCA...CACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR TCA 90 bp | CCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTAAATAAGTCTGGGGAGCTCCTCTaGTCGGTGTCTTTGTCACTG | + |
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Preference number: 4 (lower is better) Translates to: PQSRAIWHFPVECRELNKSGELL*SVSLSL Trigger: CAGTGACAAAGACACCGATCAGAGGAGCTCCCCAGA...CTTATTTAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR GCA 90 bp | TCTTACTTAGCATGCTACATTAACCTGACAAAGCTTAATCTTGTGTTCGCTTCGGCCGCCATCACCCGCTaGCGCTCGATGATCAGGATG | + |
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Preference number: 4 (lower is better) Translates to: SYLACYINLTKLNLVFASAAITR*RSMIRM Trigger: CATCCTGATCATCGAGCGGCAGCGGGTGATGGCGGC...CGAAGCGAACACAAGATTAAGCTTTGTCAGGTTAATGTAGCATGCTAAGTAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR GCA 90 bp | TCTTACTTAGCATGCTACATTAACCTGACAAAGCTTAATCTTGTGTTCGCTTCGTCTGGTTTAGCAAGCTaGGCTGGCAGCGTCCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: SYLACYINLTKLNLVFASSGLAS*AGSVPG Trigger: GCCCGGGACGCTGCCAGCGCAGCTTGCTAAACCAGA...CGAAGCGAACACAAGATTAAGCTTTGTCAGGTTAATGTAGCATGCTAAGTAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR GCA 90 bp | TTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGACTCTCCTGAAAGGGGAAGCTGGTACTGCTGCTaGAGCGTCATGGTGTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: LSNRRQEYTVLVDSPERGSWYCC*SVMVFH Trigger: GTGGAACACCATGACGCTGCAGCAGCAGTACCAGCT...TCCCCTTTCAGGAGAGTCCACTAATACTGTATACTCTTGCCTCCTGTTTGACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR GCA 90 bp | CCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTAAATAAGCTCAGCTGGTACTGCTaGTGCAGCGTCATGGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: PQSRAIWHFPVECRELNKLSWYC*CSVMVF Trigger: GAACACCATGACGCTGCAGCAGCAGTACCAGCTGAG...CTTATTTAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | TCTTACTTAGCATGCTACATTAACCTGACAAAGCTTAATCTTGTGTTCGCTTCGAGAGACGGTCCCCGATaGGCCCTCGATCAGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: SYLACYINLTKLNLVFASRDGPR*ALDQEV Trigger: CACCTCCTGATCGAGGGCCCATCGGGGACCGTCTCT...CGAAGCGAACACAAGATTAAGCTTTGTCAGGTTAATGTAGCATGCTAAGTAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | TTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGACTCTCCTGAAAGGGGACAACACTTCCAGGGGTaGCCGGTTGGCTTTCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: LSNRRQEYTVLVDSPERGQHFQG*PVGFQA Trigger: AGCTTGAAAGCCAACCGGCCACCCCTGGAAGTGTTG...TCCCCTTTCAGGAGAGTCCACTAATACTGTATACTCTTGCCTCCTGTTTGACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | TTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGACTCTCCTGAAAGGGGATGGGGACCACGTTGCTaGAGTCTGCGGAAAAGCGTA | + |
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Preference number: 4 (lower is better) Translates to: LSNRRQEYTVLVDSPERGWGPRC*SLRKSV Trigger: TACGCTTTTCCGCAGACTCCAGCAACGTGGTCCCCA...TCCCCTTTCAGGAGAGTCCACTAATACTGTATACTCTTGCCTCCTGTTTGACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR TCA 90 bp | CTATCAAGCACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGGTTGGCTTTCAAGCTaGAGGGCAGAGAGACGGTCC | + |
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Preference number: 4 (lower is better) Translates to: LSSTVTLSNRRQEYTVLVGWLSS*RAERRS Trigger: GGACCGTCTCTCTGCCCTTCAGCTTGAAAGCCAACC...CACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | CTATCAAGCACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGTACTGGGACCTCAGCTaGTACTGCTGCTGCAGCGTC | + |
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Preference number: 4 (lower is better) Translates to: LSSTVTLSNRRQEYTVLVYWDLS*YCCCSV Trigger: GACGCTGCAGCAGCAGTACCAGCTGAGGTCCCAGTA...CACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | TCTTACTTAGCATGCTACATTAACCTGACAAAGCTTAATCTTGTGTTCGCTTCGAACCGTCGTCAGGGATaGAGATCCGAGGGTCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: SYLACYINLTKLNLVFASNRRQG*RSEGPR Trigger: CCGAGGACCCTCGGATCTCCATCCCTGACGACGGTT...CGAAGCGAACACAAGATTAAGCTTTGTCAGGTTAATGTAGCATGCTAAGTAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR TCA 90 bp | CTATCAAGCACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGCGGTGTCTTTGTCACTaGAGGCCTCCGCAGTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: LSSTVTLSNRRQEYTVLVRCLCH*RPPQCC Trigger: ACAACACTGCGGAGGCCTTCAGTGACAAAGACACCG...CACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR TCA 90 bp | CTAAATCCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTATGGTGTTCCACAGGGTaGCGTCATTGGGTAAAAAGG | + |
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Preference number: 4 (lower is better) Translates to: LNPQSRAIWHFPVECRELWCSTG*RHWVKR Trigger: CCTTTTTACCCAATGACGTCACCCTGTGGAACACCA...TAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGGATTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | TTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGACTCTCCTGAAAGGGGAGGCTCGACTGGTTTCTaGCCAAAGTATTCCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LSNRRQEYTVLVDSPERGGSTGF*PKYSSA Trigger: TGCTGAGGAATACTTTGGCCAGAAACCAGTCGAGCC...TCCCCTTTCAGGAGAGTCCACTAATACTGTATACTCTTGCCTCCTGTTTGACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR TCA 90 bp | ACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGACTCTCCTAGCAGTTCTTGCTTTTaGCAACATCTGGGGAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: TVTLSNRRQEYTVLVDSPSSSCF*QHLGSS Trigger: GGAGCTCCCCAGATGTTGTCAAAAGCAAGAACTGCT...AGGAGAGTCCACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | ACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGACTCTCCTAATGGACTGACATACTaGGACCTCAGCTGGTACTGC | + |
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Preference number: 4 (lower is better) Translates to: TVTLSNRRQEYTVLVDSPNGLTY*DLSWYC Trigger: GCAGTACCAGCTGAGGTCCCAGTATGTCAGTCCATT...AGGAGAGTCCACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR TCA 90 bp | TCTTACTTAGCATGCTACATTAACCTGACAAAGCTTAATCTTGTGTTCGCTTCGTACTGGGAAATGGACTaGCATACTGGGACCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: SYLACYINLTKLNLVFASYWEMD*HTGTSA Trigger: AGCTGAGGTCCCAGTATGTCAGTCCATTTCCCAGTA...CGAAGCGAACACAAGATTAAGCTTTGTCAGGTTAATGTAGCATGCTAAGTAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | TCTTACTTAGCATGCTACATTAACCTGACAAAGCTTAATCTTGTGTTCGCTTCGCTCTTCTGTCAGATCTaGTTTAGCAAGCTGCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SYLACYINLTKLNLVFASLFCQI*FSKLRW Trigger: CCAGCGCAGCTTGCTAAACCAGATCTGACAGAAGAG...CGAAGCGAACACAAGATTAAGCTTTGTCAGGTTAATGTAGCATGCTAAGTAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | CTATCAAGCACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGGAGTTACTGGGAAATaGACTGACATACTGGGACCT | + |
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Preference number: 4 (lower is better) Translates to: LSSTVTLSNRRQEYTVLVGVTGK*TDILGP Trigger: AGGTCCCAGTATGTCAGTCCATTTCCCAGTAACTCC...CACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | CTATCAAGCACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGAGGACAGTGGGCTTCTaGTTGGGAAAGATTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LSSTVTLSNRRQEYTVLVRTVGF*LGKIFF Trigger: GAAGAAAATCTTTCCCAACCAGAAGCCCACTGTCCT...CACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CCA 90 bp | CTATCAAGCACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGCAGTGGGCTTCTGGTTaGGAAAGATTTTCTTCAACA | + |
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Preference number: 4 (lower is better) Translates to: LSSTVTLSNRRQEYTVLVQWASG*ERFSST Trigger: TGTTGAAGAAAATCTTTCCCAACCAGAAGCCCACTG...CACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| 3UTR CAA 72 bp | TTATTGCTAATGTATAGACTATCAAGCACAGTCACTTaGTCAAACAGGAGGCAAGAGTATACAGTATTAGTG | + |
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Preference number: 4 (lower is better) Translates to: LLLMYRLSSTVT*SNRRQEYTVLV Trigger: CACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAGTCTATACATTAGCAATAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | GCGGCCGCGGCCAACTCCGCGGTGGGACGAGGCGGCGCGGGCGGCTaGGACGCTTGGGAGGCTGGCGACGACTGCGAGGCGGTAGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: AAAANSAVGRGGAGG*DAWEAGDDCEAVAA Trigger: CGCCGCTACCGCCTCGCAGTCGTCGCCAGCCTCCCAAGCGTCCCAGCCGCCCGCGCCGCCTCGTCCCACCGCGGAGTTGGCCGCGGCCGC 80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | TCTGTCAGATCTGGTTTAGCAAGCTGCGCTGGCAGCGTCCCGGGCTaGGGCTCCGCGACCCAGCGCAGCGCGGCGGCCGCGGCCAACTCC | + |
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Preference number: 5 (lower is better) Translates to: SVRSGLASCAGSVPG*GSATQRSAAAAANS Trigger: GGAGTTGGCCGCGGCCGCCGCGCTGCGCTGGGTCGCGGAGCCCCAGCCCGGGACGCTGCCAGCGCAGCTTGCTAAACCAGATCTGACAGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS GCA 90 bp | CTGCTGTCCCCAACTCTCTCTTCTGTCAGATCTGGTTTAGCAAGCTaGGCTGGCAGCGTCCCGGGCTGGGGCTCCGCGACCCAGCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LLSPTLSSVRSGLAS*AGSVPGWGSATQRS Trigger: GCTGCGCTGGGTCGCGGAGCCCCAGCCCGGGACGCTGCCAGCGCAGCTTGCTAAACCAGATCTGACAGAAGAGAGAGTTGGGGACAGCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | TGGCCGGTTGGCTTTCAAGCTGAAGGGCAGAGAGACGGTCCCCGATaGGCCCTCGATCAGGAGGTGGCTCTGCTCAGCGTGGTACTTGGG | + |
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Preference number: 5 (lower is better) Translates to: WPVGFQAEGQRDGPR*ALDQEVALLSVVLG Trigger: CCCAAGTACCACGCTGAGCAGAGCCACCTCCTGATCGAGGGCCCATCGGGGACCGTCTCTCTGCCCTTCAGCTTGAAAGCCAACCGGCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | GTTGTCCGTGGAACTGCTGTCCCCAACTCTCTCTTCTGTCAGATCTaGTTTAGCAAGCTGCGCTGGCAGCGTCCCGGGCTGGGGCTCCGC | + |
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Preference number: 5 (lower is better) Translates to: VVRGTAVPNSLFCQI*FSKLRWQRPGLGLR Trigger: GCGGAGCCCCAGCCCGGGACGCTGCCAGCGCAGCTTGCTAAACCAGATCTGACAGAAGAGAGAGTTGGGGACAGCAGTTCCACGGACAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | TGTAGATGGACTGCTTTGTCACGATTGGACAACCGTCGTCAGGGATaGAGATCCGAGGGTCCTCGGTGGTGCGGGAGGAGAGCACGGGCG | + |
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Preference number: 5 (lower is better) Translates to: CRWTALSRLDNRRQG*RSEGPRWCGRRARA Trigger: CGCCCGTGCTCTCCTCCCGCACCACCGAGGACCCTCGGATCTCCATCCCTGACGACGGTTGTCCAATCGTGACAAAGCAGTCCATCTACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | GAGCACGGGCGAGCTCCGGAAGACGCTAGTGGAGTTACTGGGAAATaGACTGACATACTGGGACCTCAGCTGGTACTGCTGCTGCAGCGT | + |
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Preference number: 5 (lower is better) Translates to: EHGRAPEDASGVTGK*TDILGPQLVLLLQR Trigger: ACGCTGCAGCAGCAGTACCAGCTGAGGTCCCAGTATGTCAGTCCATTTCCCAGTAACTCCACTAGCGTCTTCCGGAGCTCGCCCGTGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | CTCGGGGCTCTCCGGAGTGAAGCAGTTCTTGCTTTTGACAACATCTaGGGAGCTCCTCTGATCGGTGTCTTTGTCACTGAAGGCCTCCGC | + |
|
Preference number: 5 (lower is better) Translates to: LGALRSEAVLAFDNI*GAPLIGVFVTEGLR Trigger: GCGGAGGCCTTCAGTGACAAAGACACCGATCAGAGGAGCTCCCCAGATGTTGTCAAAAGCAAGAACTGCTTCACTCCGGAGAGCCCCGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS GCA 90 bp | GAGTTACTGGGAAATGGACTGACATACTGGGACCTCAGCTGGTACTaGTGCTGCAGCGTCATGGTGTTCCACAGGGTGACGTCATTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: ELLGNGLTYWDLSWY*CCSVMVFHRVTSLG Trigger: ACCCAATGACGTCACCCTGTGGAACACCATGACGCTGCAGCAGCAGTACCAGCTGAGGTCCCAGTATGTCAGTCCATTTCCCAGTAACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | CTAGTGGAGTTACTGGGAAATGGACTGACATACTGGGACCTCAGCTaGTACTGCTGCTGCAGCGTCATGGTGTTCCACAGGGTGACGTCA | + |
|
Preference number: 5 (lower is better) Translates to: LVELLGNGLTYWDLS*YCCCSVMVFHRVTS Trigger: TGACGTCACCCTGTGGAACACCATGACGCTGCAGCAGCAGTACCAGCTGAGGTCCCAGTATGTCAGTCCATTTCCCAGTAACTCCACTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | CTCGTCATAGTCATCCTCTGTGTAGATGGACTGCTTTGTCACGATTaGACAACCGTCGTCAGGGATGGAGATCCGAGGGTCCTCGGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: LVIVILCVDGLLCHD*TTVVRDGDPRVLGG Trigger: ACCACCGAGGACCCTCGGATCTCCATCCCTGACGACGGTTGTCCAATCGTGACAAAGCAGTCCATCTACACAGAGGATGACTATGACGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS TCA 90 bp | GGAGTGAAGCAGTTCTTGCTTTTGACAACATCTGGGGAGCTCCTCTaGTCGGTGTCTTTGTCACTGAAGGCCTCCGCAGTGTTGTCCGTG | + |
|
Preference number: 5 (lower is better) Translates to: GVKQFLLLTTSGELL*SVSLSLKASAVLSV Trigger: CACGGACAACACTGCGGAGGCCTTCAGTGACAAAGACACCGATCAGAGGAGCTCCCCAGATGTTGTCAAAAGCAAGAACTGCTTCACTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS GCA 90 bp | CTGGGAAATGGACTGACATACTGGGACCTCAGCTGGTACTGCTGCTaGAGCGTCATGGTGTTCCACAGGGTGACGTCATTGGGTAAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: LGNGLTYWDLSWYCC*SVMVFHRVTSLGKK Trigger: CTTTTTACCCAATGACGTCACCCTGTGGAACACCATGACGCTGCAGCAGCAGTACCAGCTGAGGTCCCAGTATGTCAGTCCATTTCCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | ATGGTGTTCCACAGGGTGACGTCATTGGGTAAAAAGGGGCTCGACTaGTTTCTGGCCAAAGTATTCCTCAGCATCAGCGGGTACCGAGGT | + |
|
Preference number: 5 (lower is better) Translates to: MVFHRVTSLGKKGLD*FLAKVFLSISGYRG Trigger: ACCTCGGTACCCGCTGATGCTGAGGAATACTTTGGCCAGAAACCAGTCGAGCCCCTTTTTACCCAATGACGTCACCCTGTGGAACACCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS GCA 90 bp | TTACTGGGAAATGGACTGACATACTGGGACCTCAGCTGGTACTGCTaGTGCAGCGTCATGGTGTTCCACAGGGTGACGTCATTGGGTAAA | + |
|
Preference number: 5 (lower is better) Translates to: LLGNGLTYWDLSWYC*CSVMVFHRVTSLGK Trigger: TTTACCCAATGACGTCACCCTGTGGAACACCATGACGCTGCAGCAGCAGTACCAGCTGAGGTCCCAGTATGTCAGTCCATTTCCCAGTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CAA 90 bp | TTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGACTCTCCTGAAAGGGGATCCAGGGGTGGCCGGTaGGCTTTCAAGCTGAAGGGC | + |
|
Preference number: 5 (lower is better) Translates to: LSNRRQEYTVLVDSPERGSRGGR*AFKLKG Trigger: GCCCTTCAGCTTGAAAGCCAACCGGCCACCCCTGGA...TCCCCTTTCAGGAGAGTCCACTAATACTGTATACTCTTGCCTCCTGTTTGACAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CAA 90 bp | GTCTCTGAAAACGGCCCGAGCTTAAACAAGAGCCTGCCTGCTCAGTCCGCTCTATGTAGATGGACTGCTTaGTCACGATTGGACAACCGT | + |
|
Preference number: 5 (lower is better) Translates to: VSENGPSLNKSLPAQSALCRWTA*SRLDNR Trigger: ACGGTTGTCCAATCGTGACAAAGCAGTCCATCTACA...TAGAGCGGACTGAGCAGGCAGGCTCTTGTTTAAGCTCGGGCCGTTTTCAGAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 90 bp | AATCCGAGGAGTCAGACCTCTCGTCATAGTCATCCTCTGTGTAGATaGACTGCTTTGTCACGATTGGACAACCGTCGTCAGGGATGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: NPRSQTSRHSHPLCR*TALSRLDNRRQGWR Trigger: TCTCCATCCCTGACGACGGTTGTCCAATCGTGACAAAGCAGTCCATCTACACAGAGGATGACTATGACGAGAGGTCTGACTCCTCGGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CAA 90 bp | TCTTACTTAGCATGCTACATTAACCTGACAAAGCTTAATCTTGTGTTCGCTTCGCTCTCCAGGCTCTCGTaGGCCTGCTGCCTGCGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: SYLACYINLTKLNLVFASLSRLS*ACCLRS Trigger: GCTGCGCAGGCAGCAGGCCAACGAGAGCCTGGAGAG...CGAAGCGAACACAAGATTAAGCTTTGTCAGGTTAATGTAGCATGCTAAGTAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CAA 90 bp | CTATCAAGCACAGTCACTTTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGGGTTGGGGACCACGTaGCTGGAGTCTGCGGAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: LSSTVTLSNRRQEYTVLVGLGTT*LESAEK Trigger: CTTTTCCGCAGACTCCAGCAACGTGGTCCCCAACCC...CACTAATACTGTATACTCTTGCCTCCTGTTTGACAAAGTGACTGTGCTTGATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CAA 90 bp | TTGTCAAACAGGAGGCAAGAGTATACAGTATTAGTGGACTCTCCTGAAAGGGGACACAGGGTGACGTCATaGGGTAAAAAGGGGCTCGAC | + |
|
Preference number: 5 (lower is better) Translates to: LSNRRQEYTVLVDSPERGHRVTS*GKKGLD Trigger: GTCGAGCCCCTTTTTACCCAATGACGTCACCCTGTG...TCCCCTTTCAGGAGAGTCCACTAATACTGTATACTCTTGCCTCCTGTTTGACAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS-3UTR CAA 90 bp | CCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCAGGGAATTAAATAAGAAGCAGTTCTTGCTTTaGACAACATCTGGGGAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: PQSRAIWHFPVECRELNKKQFLL*TTSGEL Trigger: GAGCTCCCCAGATGTTGTCAAAAGCAAGAACTGCTT...CTTATTTAATTCCCTGCACTCCACTGGAAAATGCCAAATAGCTCTGCTCTGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS GCA 72 bp | GCGGGCGGCTGGGACGCTTGGGAGGCTGGCGACGACTaGGAGGCGGTAGCGGCGGTGGCCGCAGCGTCCCCC | + |
|
Preference number: 6 (lower is better) Translates to: AGGWDAWEAGDD*EAVAAVAAASP Trigger: GGGGGACGCTGCGGCCACCGCCGCTACCGCCTCGCAGTCGTCGCCAGCCTCCCAAGCGTCCCAGCCGCCCGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | GCCAACTCCGCGGTGGGACGAGGCGGCGCGGGCGGCTaGGACGCTTGGGAGGCTGGCGACGACTGCGAGGCG | + |
|
Preference number: 6 (lower is better) Translates to: ANSAVGRGGAGG*DAWEAGDDCEA Trigger: CGCCTCGCAGTCGTCGCCAGCCTCCCAAGCGTCCCAGCCGCCCGCGCCGCCTCGTCCCACCGCGGAGTTGGC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS GCA 72 bp | CGTCGTCAGGGATGGAGATCCGAGGGTCCTCGGTGGTaGGGGAGGAGAGCACGGGCGAGCTCCGGAAGACGC | + |
|
Preference number: 6 (lower is better) Translates to: RRQGWRSEGPRW*GRRARASSGRR Trigger: GCGTCTTCCGGAGCTCGCCCGTGCTCTCCTCCCGCACCACCGAGGACCCTCGGATCTCCATCCCTGACGACG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | AGAGAGACGGTCCCCGATGGGCCCTCGATCAGGAGGTaGCTCTGCTCAGCGTGGTACTTGGGGCTGTCGGGG | + |
|
Preference number: 6 (lower is better) Translates to: RETVPDGPSIRR*LCSAWYLGLSG Trigger: CCCCGACAGCCCCAAGTACCACGCTGAGCAGAGCCACCTCCTGATCGAGGGCCCATCGGGGACCGTCTCTCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | AACCGTCGTCAGGGATGGAGATCCGAGGGTCCTCGGTaGTGCGGGAGGAGAGCACGGGCGAGCTCCGGAAGA | + |
|
Preference number: 6 (lower is better) Translates to: NRRQGWRSEGPR*CGRRARASSGR Trigger: TCTTCCGGAGCTCGCCCGTGCTCTCCTCCCGCACCACCGAGGACCCTCGGATCTCCATCCCTGACGACGGTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | TCTCTCTTCTGTCAGATCTGGTTTAGCAAGCTGCGCTaGCAGCGTCCCGGGCTGGGGCTCCGCGACCCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: SLFCQIWFSKLR*QRPGLGLRDPA Trigger: CGCTGGGTCGCGGAGCCCCAGCCCGGGACGCTGCCAGCGCAGCTTGCTAAACCAGATCTGACAGAAGAGAGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | GGCTTTCAAGCTGAAGGGCAGAGAGACGGTCCCCGATaGGCCCTCGATCAGGAGGTGGCTCTGCTCAGCGTG | + |
|
Preference number: 6 (lower is better) Translates to: GFQAEGQRDGPR*ALDQEVALLSV Trigger: CACGCTGAGCAGAGCCACCTCCTGATCGAGGGCCCATCGGGGACCGTCTCTCTGCCCTTCAGCTTGAAAGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS TCA 72 bp | TCAACACTTCCAGGGGTGGCCGGTTGGCTTTCAAGCTaGAGGGCAGAGAGACGGTCCCCGATGGGCCCTCGA | + |
|
Preference number: 6 (lower is better) Translates to: STLPGVAGWLSS*RAERRSPMGPR Trigger: TCGAGGGCCCATCGGGGACCGTCTCTCTGCCCTTCAGCTTGAAAGCCAACCGGCCACCCCTGGAAGTGTTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | AAAGTATTCCTCAGCATCAGCGGGTACCGAGGTGGCTaGGGGAAAGGATGCTGCAGGGGCACGGCCAAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: KVFLSISGYRGG*GKGCCRGTAKG Trigger: CCCCTTGGCCGTGCCCCTGCAGCATCCTTTCCCCCAGCCACCTCGGTACCCGCTGATGCTGAGGAATACTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | GGAACTGCTGTCCCCAACTCTCTCTTCTGTCAGATCTaGTTTAGCAAGCTGCGCTGGCAGCGTCCCGGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: GTAVPNSLFCQI*FSKLRWQRPGL Trigger: CAGCCCGGGACGCTGCCAGCGCAGCTTGCTAAACCAGATCTGACAGAAGAGAGAGTTGGGGACAGCAGTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | ACTGCTTTGTCACGATTGGACAACCGTCGTCAGGGATaGAGATCCGAGGGTCCTCGGTGGTGCGGGAGGAGA | + |
|
Preference number: 6 (lower is better) Translates to: TALSRLDNRRQG*RSEGPRWCGRR Trigger: TCTCCTCCCGCACCACCGAGGACCCTCGGATCTCCATCCCTGACGACGGTTGTCCAATCGTGACAAAGCAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS TCA 72 bp | CATCTGGGGAGCTCCTCTGATCGGTGTCTTTGTCACTaGAGGCCTCCGCAGTGTTGTCCGTGGAACTGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: HLGSSSDRCLCH*RPPQCCPWNCC Trigger: ACAGCAGTTCCACGGACAACACTGCGGAGGCCTTCAGTGACAAAGACACCGATCAGAGGAGCTCCCCAGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS GCA 72 bp | GGACTGACATACTGGGACCTCAGCTGGTACTGCTGCTaGAGCGTCATGGTGTTCCACAGGGTGACGTCATTG | + |
|
Preference number: 6 (lower is better) Translates to: GLTYWDLSWYCC*SVMVFHRVTSL Trigger: CAATGACGTCACCCTGTGGAACACCATGACGCTGCAGCAGCAGTACCAGCTGAGGTCCCAGTATGTCAGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS TCA 72 bp | GGTACTGCTGCTGCAGCGTCATGGTGTTCCACAGGGTaGCGTCATTGGGTAAAAAGGGGCTCGACTGGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: GTAAAASWCSTG*RHWVKRGSTGF Trigger: GAAACCAGTCGAGCCCCTTTTTACCCAATGACGTCACCCTGTGGAACACCATGACGCTGCAGCAGCAGTACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS GCA 72 bp | AATGGACTGACATACTGGGACCTCAGCTGGTACTGCTaGTGCAGCGTCATGGTGTTCCACAGGGTGACGTCA | + |
|
Preference number: 6 (lower is better) Translates to: NGLTYWDLSWYC*CSVMVFHRVTS Trigger: TGACGTCACCCTGTGGAACACCATGACGCTGCAGCAGCAGTACCAGCTGAGGTCCCAGTATGTCAGTCCATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | CGAGCTCCGGAAGACGCTAGTGGAGTTACTGGGAAATaGACTGACATACTGGGACCTCAGCTGGTACTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: RAPEDASGVTGK*TDILGPQLVLL Trigger: CAGCAGTACCAGCTGAGGTCCCAGTATGTCAGTCCATTTCCCAGTAACTCCACTAGCGTCTTCCGGAGCTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CAA 72 bp | GGAAAGATTTTCTTCAACACTTCCAGGGGTGGCCGGTaGGCTTTCAAGCTGAAGGGCAGAGAGACGGTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: GKIFFNTSRGGR*AFKLKGRETVP Trigger: GGGGACCGTCTCTCTGCCCTTCAGCTTGAAAGCCAACCGGCCACCCCTGGAAGTGTTGAAGAAAATCTTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CAA 90 bp | TCTCGTCATAGTCATCCTCTGTGTAGATGGACTGCTTTGTCACGATaGGACAACCGTCGTCAGGGATGGAGATCCGAGGGTCCTCGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: SRHSHPLCRWTALSR*DNRRQGWRSEGPRW Trigger: CCACCGAGGACCCTCGGATCTCCATCCCTGACGACGGTTGTCCAATCGTGACAAAGCAGTCCATCTACACAGAGGATGACTATGACGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | GTCATCCTCTGTGTAGATGGACTGCTTTGTCACGATTaGACAACCGTCGTCAGGGATGGAGATCCGAGGGTC | + |
|
Preference number: 6 (lower is better) Translates to: VILCVDGLLCHD*TTVVRDGDPRV Trigger: GACCCTCGGATCTCCATCCCTGACGACGGTTGTCCAATCGTGACAAAGCAGTCCATCTACACAGAGGATGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CAA 72 bp | TGCTGCAGCGTCATGGTGTTCCACAGGGTGACGTCATaGGGTAAAAAGGGGCTCGACTGGTTTCTGGCCAAA | + |
|
Preference number: 6 (lower is better) Translates to: CCSVMVFHRVTS*GKKGLDWFLAK Trigger: TTTGGCCAGAAACCAGTCGAGCCCCTTTTTACCCAATGACGTCACCCTGTGGAACACCATGACGCTGCAGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CAA 90 bp | TGGTACTGCTGCTGCAGCGTCATGGTGTTCCACAGGGTGACGTCATaGGGTAAAAAGGGGCTCGACTGGTTTCTGGCCAAAGTATTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: WYCCCSVMVFHRVTS*GKKGLDWFLAKVFL Trigger: GAGGAATACTTTGGCCAGAAACCAGTCGAGCCCCTTTTTACCCAATGACGTCACCCTGTGGAACACCATGACGCTGCAGCAGCAGTACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS TCA 72 bp | CAGTTCTTGCTTTTGACAACATCTGGGGAGCTCCTCTaGTCGGTGTCTTTGTCACTGAAGGCCTCCGCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: QFLLLTTSGELL*SVSLSLKASAV Trigger: CACTGCGGAGGCCTTCAGTGACAAAGACACCGATCAGAGGAGCTCCCCAGATGTTGTCAAAAGCAAGAACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | CTGGTTGGGAAAGATTTTCTTCAACACTTCCAGGGGTaGCCGGTTGGCTTTCAAGCTGAAGGGCAGAGAGAC | + |
|
Preference number: 6 (lower is better) Translates to: LVGKDFLQHFQG*PVGFQAEGQRD Trigger: GTCTCTCTGCCCTTCAGCTTGAAAGCCAACCGGCCACCCCTGGAAGTGTTGAAGAAAATCTTTCCCAACCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CAA 90 bp | AGTCAGACCTCTCGTCATAGTCATCCTCTGTGTAGATGGACTGCTTaGTCACGATTGGACAACCGTCGTCAGGGATGGAGATCCGAGGGT | + |
|
Preference number: 6 (lower is better) Translates to: SQTSRHSHPLCRWTA*SRLDNRRQGWRSEG Trigger: ACCCTCGGATCTCCATCCCTGACGACGGTTGTCCAATCGTGACAAAGCAGTCCATCTACACAGAGGATGACTATGACGAGAGGTCTGACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | CTCCGGAGTGAAGCAGTTCTTGCTTTTGACAACATCTaGGGAGCTCCTCTGATCGGTGTCTTTGTCACTGAA | + |
|
Preference number: 6 (lower is better) Translates to: LRSEAVLAFDNI*GAPLIGVFVTE Trigger: TTCAGTGACAAAGACACCGATCAGAGGAGCTCCCCAGATGTTGTCAAAAGCAAGAACTGCTTCACTCCGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | AGTCAGACCTCTCGTCATAGTCATCCTCTGTGTAGATaGACTGCTTTGTCACGATTGGACAACCGTCGTCAG | + |
|
Preference number: 6 (lower is better) Translates to: SQTSRHSHPLCR*TALSRLDNRRQ Trigger: CTGACGACGGTTGTCCAATCGTGACAAAGCAGTCCATCTACACAGAGGATGACTATGACGAGAGGTCTGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CAA 72 bp | TCTCGTCATAGTCATCCTCTGTGTAGATGGACTGCTTaGTCACGATTGGACAACCGTCGTCAGGGATGGAGA | + |
|
Preference number: 6 (lower is better) Translates to: SRHSHPLCRWTA*SRLDNRRQGWR Trigger: TCTCCATCCCTGACGACGGTTGTCCAATCGTGACAAAGCAGTCCATCTACACAGAGGATGACTATGACGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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| CDS CCA 72 bp | CAACCTTTCAAGATGAGCTCCAGGACAGTGGGCTTCTaGTTGGGAAAGATTTTCTTCAACACTTCCAGGGGT | + |
|
Preference number: 6 (lower is better) Translates to: QPFKMSSRTVGF*LGKIFFNTSRG Trigger: ACCCCTGGAAGTGTTGAAGAAAATCTTTCCCAACCAGAAGCCCACTGTCCTGGAGCTCATCTTGAAAGGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048935.6 |
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