RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DMPK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030409

Ensembl transcript IDs: ENSMUST00000032568.14, ENSMUST00000108473.10, ENSMUST00000108474.2, ENSMUST00000122999.8, ENSMUST00000154199.8, ENSMUST00000238982.2

Found 279 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGAGCGGAGCTaGGTGGGGACCCAGGCTCACAGAAGTGTGGAGCGGAGCGGTGGG +
Preference number: 1 (lower is better)
Translates to: PPRPPGGRPGSQERS*VGTQAHRSVERSGG
Trigger: CCCACCGCTCCGCTCCACACTTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCTCCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR GCA 90 bp AGCTGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTaGTGGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGC +
Preference number: 1 (lower is better)
Translates to: SCCSSGGYQLCRNQG*WARALFLPPRPPGG
Trigger: GCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR CCA 90 bp TGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTaGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGG +
Preference number: 1 (lower is better)
Translates to: CCSSGGYQLCRNQGC*ARALFLPPRPPGGR
Trigger: CCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR TCA 90 bp GGGTTCAGGGGGCGAAGGTGGCTCCCGGGAAACACCAGACTGGGGTaGGACCGCCGGTATAGGCCACCAACCCAGTGCAGCCCAGTGTGG +
Preference number: 1 (lower is better)
Translates to: GFRGRRWLPGNTRLG*DRRYRPPTQCSPVW
Trigger: CCACACTGGGCTGCACTGGGTTGGTGGCCTATACCGGCGGTCTCACCCCAGTCTGGTGTTTCCCGGGAGCCACCTTCGCCCCCTGAACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
3UTR CCA 90 bp CTGAGTAAAGCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTaGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCT +
Preference number: 1 (lower is better)
Translates to: LSKARSANAQLLQQR*LPALQEPGVLGTSP
Trigger: AGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR TCA 90 bp CTTTGGGTCGCTCCCTGGTCGCTCGACCTTCCTAGGAGGCCTAAATaGAAGATGGCTTGGAGTCTTAGGGTTCAGGGGGCGAAGGTGGCT +
Preference number: 1 (lower is better)
Translates to: LWVAPWSLDLPRRPK*KMAWSLRVQGAKVA
Trigger: AGCCACCTTCGCCCCCTGAACCCTAAGACTCCAAGCCATCTTTCATTTAGGCCTCCTAGGAAGGTCGAGCGACCAGGGAGCGACCCAAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
3UTR CCA 90 bp AAAGACTCCGTGTGTGCTGGCAGAGGTCTTGCTGATCCATCACTATaGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGCT +
Preference number: 1 (lower is better)
Translates to: KDSVCAGRGLADPSL*EWDVPGNRGLMLMA
Trigger: AGCCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTCTGCCAGCACACACGGAGTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR TCA 90 bp CGGCAGCAGCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCGGATAGGCGCAGGGAGCAGCAGGTaGCGGCGGTGCATGGGGCCT +
Preference number: 2 (lower is better)
Translates to: RQQPEQRRTGAGNAPRIGAGSSR*RRCMGP
Trigger: AGGCCCCATGCACCGCCGTCACCTGCTGCTCCCTGC...GCCTATCCGAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
3UTR-3UTR GCA 90 bp GTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGAGCGGAGCTGCGGCGAATGCCCAGCTaGTGCAGCAGCGGTGGCTAC +
Preference number: 2 (lower is better)
Translates to: VPPSPAARWQAWITGAELRRMPS*CSSGGY
Trigger: GTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCG...CAGCTCCGCTCCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR-3UTR GCA 90 bp GGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAAGGCCACCAACCCAGTaGAGCCCAGTGTGGCGGCAG +
Preference number: 2 (lower is better)
Translates to: GTSPVPPSPAARWQAWITRPPTQ*SPVWRQ
Trigger: CTGCCGCCACACTGGGCTGCACTGGGTTGGTGGCCT...TGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
3UTR-3UTR CCA 90 bp TGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCGCGGTGCATGGGGCCTaGCCCCACCAGCGGGCACTG +
Preference number: 2 (lower is better)
Translates to: WLPALQEPGVLGTSPVPPAVHGA*PHQRAL
Trigger: CAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGC...GGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
3UTR-3UTR CCA 90 bp TGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCGGTGACGGCGGTGCATaGGGCCTGGCCCCACCAGCG +
Preference number: 2 (lower is better)
Translates to: WLPALQEPGVLGTSPVPPGDGGA*GLAPPA
Trigger: CGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACC...GGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
3UTR-3UTR GCA 90 bp GCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTCGGCGAATGCCCAGCTaGTGCAGCAGCGGTGGCTAC +
Preference number: 2 (lower is better)
Translates to: AAVATSSAGTRGAGHEPCRRMPS*CSSGGY
Trigger: GTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCG...ACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR-3UTR GCA 90 bp GCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCAGGCCACCAACCCAGTaGAGCCCAGTGTGGCGGCAG +
Preference number: 2 (lower is better)
Translates to: AVATSSAGTRGAGHEPCSRPPTQ*SPVWRQ
Trigger: CTGCCGCCACACTGGGCTGCACTGGGTTGGTGGCCT...GGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
3UTR-3UTR CCA 90 bp GCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCAGGAGCGGAGCTGGGTaGGGACCCAGGCTCACAGAA +
Preference number: 2 (lower is better)
Translates to: AAAVATSSAGTRGAGHEPRSGAG*GPRLTE
Trigger: TTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCTCCT...GGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR-3UTR GCA 90 bp AGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCGAATGCCCAGCTGCTaGAGCAGCGGTGGCTACCAG +
Preference number: 2 (lower is better)
Translates to: SGGYQLCRNQGCWARALFRMPSC*SSGGYQ
Trigger: CTGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCG...GAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR-3UTR GCA 90 bp AGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCAGCAAGGTCGGCGAATaGCCAGCTGCTGCAGCAGCG +
Preference number: 2 (lower is better)
Translates to: SGGYQLCRNQGCWARALFSKVGE*PAAAAA
Trigger: CGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCT...GAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR-3UTR CCA 90 bp GCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCAGGAGCGGAGCTGGGTaGGGACCCAGGCTCACAGAA +
Preference number: 2 (lower is better)
Translates to: ATSSAGTRGAGHEPCSSLRSGAG*GPRLTE
Trigger: TTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCTCCT...GAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR-3UTR TCA 90 bp GCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCCCTAGGAGGCCTAAATaGAAGATGGCTTGGAGTCTT +
Preference number: 2 (lower is better)
Translates to: AVATSSAGTRGAGHEPCSPRRPK*KMAWSL
Trigger: AAGACTCCAAGCCATCTTTCATTTAGGCCTCCTAGG...GGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR GCA 90 bp GGCAGACCAGAAGTATTTTATTCGCAAGGGTCGGGAGTGGAGGTCGTAGGTGGGCGGCGAATGCCCAGCTaGTGCAGCAGCGGTGGCTAC +
Preference number: 2 (lower is better)
Translates to: GRPEVFYSQGSGVEVVGGRRMPS*CSSGGY
Trigger: GTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCG...CCCACCTACGACCTCCACTCCCGACCCTTGCGAATAAAATACTTCTGGTCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR TCA 90 bp CGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCTAGGAGGCCTAAATaGAAGATGGCTTGGAGTCTT +
Preference number: 2 (lower is better)
Translates to: RWLPALQEPGVLGTSPVPPRRPK*KMAWSL
Trigger: AAGACTCCAAGCCATCTTTCATTTAGGCCTCCTAGG...AGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR GCA 90 bp CAGACCAGAAGTATTTTATTCGCAAGGGTCGGGAGTGGAGGTCGTAGGTGGGGACGGCGAATGCCCAGCTaGTGCAGCAGCGGTGGCTAC +
Preference number: 2 (lower is better)
Translates to: QTRSILFARVGSGGRRWGRRMPS*CSSGGY
Trigger: GTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCG...TCCCCACCTACGACCTCCACTCCCGACCCTTGCGAATAAAATACTTCTGGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR GCA 90 bp GAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCAGCAAGGTCGGCGAATaGCCAGCTGCTGCAGCAGCG +
Preference number: 2 (lower is better)
Translates to: EVLLIHHYGNGMSLEIGGSKVGE*PAAAAA
Trigger: CGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCT...GCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR CCA 90 bp CTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCGGCCTAAATGAAAGATaGCTTGGAGTCTTAGGGTTC +
Preference number: 2 (lower is better)
Translates to: LPALQEPGVLGTSPVPPSGLNER*LGVLGF
Trigger: GAACCCTAAGACTCCAAGCCATCTTTCATTTAGGCC...GGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
3UTR-3UTR CCA 90 bp ATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGAGGAGCGGAGCTGGGTaGGGACCCAGGCTCACAGAA +
Preference number: 2 (lower is better)
Translates to: IHHYGNGMSLEIGGSCLWRSGAG*GPRLTE
Trigger: TTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCTCCT...CCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR TCA 90 bp TGTGTGCTGGCAGAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGCCTAGGAGGCCTAAATaGAAGATGGCTTGGAGTCTT +
Preference number: 2 (lower is better)
Translates to: CVLAEVLLIHHYGNGMSLPRRPK*KMAWSL
Trigger: AAGACTCCAAGCCATCTTTCATTTAGGCCTCCTAGG...CAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTCTGCCAGCACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR CCA 90 bp CCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGCTGCTGATCCATCACTATaGGAATGGGATGTCCCTGGA +
Preference number: 2 (lower is better)
Translates to: PSLWEWDVPGNRGLMLMAADPSL*EWDVPG
Trigger: TCCAGGGACATCCCATTCCCATAGTGATGGATCAGC...AGCCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR TCA 90 bp CCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGCTCCTAGGAGGCCTAAATaGAAGATGGCTTGGAGTCTT +
Preference number: 2 (lower is better)
Translates to: PSLWEWDVPGNRGLMLMAPRRPK*KMAWSL
Trigger: AAGACTCCAAGCCATCTTTCATTTAGGCCTCCTAGG...AGCCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR CCA 90 bp TGTGTGCTGGCAGAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGCTTGTAACTGATGGCTaGGAGAGTGAAAAAGTGAAA +
Preference number: 2 (lower is better)
Translates to: CVLAEVLLIHHYGNGMSLLVTDG*ESEKVK
Trigger: TTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAG...CAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTCTGCCAGCACACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR-3UTR CCA 90 bp CTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTACTTGTAACTGATGGCTaGGAGAGTGAAAAAGTGAAA +
Preference number: 2 (lower is better)
Translates to: LIHHYGNGMSLEIGGSCLLVTDG*ESEKVK
Trigger: TTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAG...TAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR CCA 72 bp GGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTaGCAGGCCTGGATCACAGGAGCGGAGCTGGGTGGG +
Preference number: 3 (lower is better)
Translates to: GTSPVPPSPAAR*QAWITGAELGG
Trigger: CCCACCCAGCTCCGCTCCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR CCA 72 bp GGATCCTGGCAGGGAGCAGCAGGTGACGGCGGTGCATaGGGCCTGGCCCCACCAGCGGGCACTGGCCCACAG +
Preference number: 3 (lower is better)
Translates to: GSWQGAAGDGGA*GLAPPAGTGPQ
Trigger: CTGTGGGCCAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACCTGCTGCTCCCTGCCAGGATCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
3UTR GCA 72 bp AGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTaGTGGGCACGAGCCCTGTTCCTCCCTCCCCGGCCG +
Preference number: 3 (lower is better)
Translates to: SSGGYQLCRNQG*WARALFLPPRP
Trigger: CGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR CCA 72 bp AGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTaGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCA +
Preference number: 3 (lower is better)
Translates to: SGGYQLCRNQGC*ARALFLPPRPP
Trigger: TGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR CCA 72 bp GCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTaGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGC +
Preference number: 3 (lower is better)
Translates to: ARSANAQLLQQR*LPALQEPGVLG
Trigger: GCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
3UTR TCA 72 bp GGGCGAAGGTGGCTCCCGGGAAACACCAGACTGGGGTaGGACCGCCGGTATAGGCCACCAACCCAGTGCAGC +
Preference number: 3 (lower is better)
Translates to: GRRWLPGNTRLG*DRRYRPPTQCS
Trigger: GCTGCACTGGGTTGGTGGCCTATACCGGCGGTCTCACCCCAGTCTGGTGTTTCCCGGGAGCCACCTTCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
3UTR CCA 72 bp TCAGGGGGCGAAGGTGGCTCCCGGGAAACACCAGACTaGGGTGAGACCGCCGGTATAGGCCACCAACCCAGT +
Preference number: 3 (lower is better)
Translates to: SGGEGGSRETPD*GETAGIGHQPS
Trigger: ACTGGGTTGGTGGCCTATACCGGCGGTCTCACCCCAGTCTGGTGTTTCCCGGGAGCCACCTTCGCCCCCTGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
3UTR TCA 72 bp TGTACACGGGGAAGGAGTTGCAGCAACCCCCAGGAGTaGGGCTGTCCGAAGCCAAAGACTCCGTGTGTGCTG +
Preference number: 3 (lower is better)
Translates to: CTRGRSCSNPQE*GCPKPKTPCVL
Trigger: CAGCACACACGGAGTCTTTGGCTTCGGACAGCCTCACTCCTGGGGGTTGCTGCAACTCCTTCCCCGTGTACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR TCA 72 bp GCTCCCTGGTCGCTCGACCTTCCTAGGAGGCCTAAATaGAAGATGGCTTGGAGTCTTAGGGTTCAGGGGGCG +
Preference number: 3 (lower is better)
Translates to: APWSLDLPRRPK*KMAWSLRVQGA
Trigger: CGCCCCCTGAACCCTAAGACTCCAAGCCATCTTTCATTTAGGCCTCCTAGGAAGGTCGAGCGACCAGGGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
3UTR-3UTR CAA 90 bp GAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCGCAGCTGTGGCTCCGTaGTTAGAGTGCAGACGTGTA +
Preference number: 3 (lower is better)
Translates to: EVLLIHHYGNGMSLEIGGAAVAP*LECRRV
Trigger: TACACGTCTGCACTCTAACAACGGAGCCACAGCTGC...GCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR CCA 72 bp GTGTGTGCTGGCAGAGGTCTTGCTGATCCATCACTATaGGAATGGGATGTCCCTGGAAATAGGGGGCTCATG +
Preference number: 3 (lower is better)
Translates to: VCAGRGLADPSL*EWDVPGNRGLM
Trigger: CATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTCTGCCAGCACACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR GCA 72 bp TATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATaGTTATGGCTTGTAACTGATGGCTGGGAGAGTGAA +
Preference number: 3 (lower is better)
Translates to: YGNGMSLEIGGS*LWLVTDGWESE
Trigger: TTCACTCTCCCAGCCATCAGTTACAAGCCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR CCA 72 bp ATAGGGGGCTCATGCTTATGGCTTGTAACTGATGGCTaGGAGAGTGAAAAAGTGAAATCGGATGAGCTGAGC +
Preference number: 3 (lower is better)
Translates to: IGGSCLWLVTDG*ESEKVKSDELS
Trigger: GCTCAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAAGCATGAGCCCCCTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR CCA 72 bp AATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATaGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTG +
Preference number: 3 (lower is better)
Translates to: NGMSLEIGGSCL*LVTDGWESEKV
Trigger: CACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR CCA 72 bp TACCGAGGAATGTCGAGTCTCAATGCATCTAAAACGTaGGTCCCGGAGTCTGTCAGTGAGTCAGATAACAAG +
Preference number: 3 (lower is better)
Translates to: YRGMSSLNASKT*VPESVSESDNK
Trigger: CTTGTTATCTGACTCACTGACAGACTCCGGGACCCACGTTTTAGATGCATTGAGACTCGACATTCCTCGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp TGGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCAGCGGTGCATGGGGCCTaGCCCCACCAGCGGGCACTG +
Preference number: 4 (lower is better)
Translates to: WARALFLPPRPPGGRPGSAVHGA*PHQRAL
Trigger: CAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGC...TGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp TGGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCAGCAGGGAGCAGCAGGTaGCGGCGGTGCATGGGGCCT +
Preference number: 4 (lower is better)
Translates to: WARALFLPPRPPGGRPGSAGSSR*RRCMGP
Trigger: AGGCCCCATGCACCGCCGTCACCTGCTGCTCCCTGC...TGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp TGGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCAGGGTCCAGCACCAGCTaGTGGAGCTGCCTCAGCCGC +
Preference number: 4 (lower is better)
Translates to: WARALFLPPRPPGGRPGSGSSTS*WSCLSR
Trigger: GCGGCTGAGGCAGCTCCAGCAGCTGGTGCTGGACCC...TGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp TGGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCAACTCTGGCCCGTAGCTaGCTGCCCCAGGCCCTCCAC +
Preference number: 4 (lower is better)
Translates to: WARALFLPPRPPGGRPGSTLARS*LPQALH
Trigger: GTGGAGGGCCTGGGGCAGGCAGCTACGGGCCAGAGT...TGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCGGTGACGGCGGTGCATaGGGCCTGGCCCCACCAGCG +
Preference number: 4 (lower is better)
Translates to: AVATSSAGTRGAGHEPCSGDGGA*GLAPPA
Trigger: CGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACC...GGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTGGTGACGGCGGTGCATaGGGCCTGGCCCCACCAGCG +
Preference number: 4 (lower is better)
Translates to: AAVATSSAGTRGAGHEPCGDGGA*GLAPPA
Trigger: CGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACC...ACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp GCTGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGCAGGGAGCAGCAGGTaGCGGCGGTGCATGGGGCCT +
Preference number: 4 (lower is better)
Translates to: AAAAAVATSSAGTRGAGHAGSSR*RRCMGP
Trigger: AGGCCCCATGCACCGCCGTCACCTGCTGCTCCCTGC...GTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCGGGTCCAGCACCAGCTaGTGGAGCTGCCTCAGCCGC +
Preference number: 4 (lower is better)
Translates to: AAAVATSSAGTRGAGHEPGSSTS*WSCLSR
Trigger: GCGGCTGAGGCAGCTCCAGCAGCTGGTGCTGGACCC...GGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp TGGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCAACAGGTAGTCCGGGGTaGCCACAGCCACCAGCGACC +
Preference number: 4 (lower is better)
Translates to: WARALFLPPRPPGGRPGSTGSPG*PQPPAT
Trigger: GGTCGCTGGTGGCTGTGGGCACCCCGGACTACCTGT...TGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp TGGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCAGCACCCAGCTCCTGGTaGACGCCCAGGAGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: WARALFLPPRPPGGRPGSAPSSW*TPRRRS
Trigger: CGACCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGC...TGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp CGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTGCGGTGCATGGGGCCTaGCCCCACCAGCGGGCACTG +
Preference number: 4 (lower is better)
Translates to: RWLPALQEPGVLGTSPVPAVHGA*PHQRAL
Trigger: CAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGC...AGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp GTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGAGCGGAGCTGTTGTCCTGGGCTAGGTaGGAGGCACCCAGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: VPPSPAARWQAWITGAELLSWAR*EAPSSW
Trigger: CCAGGAGCTGGGTGCCTCTCACCTAGCCCAGGACAA...CAGCTCCGCTCCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp CACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGTTGTCCTGGGCTAGGTaGGAGGCACCCAGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: HEPCSSLPGRQVAGLDHRLSWAR*EAPSSW
Trigger: CCAGGAGCTGGGTGCCTCTCACCTAGCCCAGGACAA...CCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCGGGTCCAGCACCAGCTaGTGGAGCTGCCTCAGCCGC +
Preference number: 4 (lower is better)
Translates to: AVATSSAGTRGAGHEPCSGSSTS*WSCLSR
Trigger: GCGGCTGAGGCAGCTCCAGCAGCTGGTGCTGGACCC...GGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp CACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGTCCAGCACCAGCTGCTaGAGCTGCCTCAGCCGCACT +
Preference number: 4 (lower is better)
Translates to: HEPCSSLPGRQVAGLDHRSSTSC*SCLSRT
Trigger: AGTGCGGCTGAGGCAGCTCCAGCAGCTGGTGCTGGA...CCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGAGCGGAGCTGCAGTCCCAGGAAGCCTaGGTCCAGCACCAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: VPPSPAARWQAWITGAELQSQEA*VQHQLL
Trigger: CAGCAGCTGGTGCTGGACCCAGGCTTCCTGGGACTG...CAGCTCCGCTCCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp AGCGGAGCTGGGTGGGGACCCAGGCTCACAGAAGTGTGGAGCGGAGCGGTGGGGGCACCCAGCTCCTGGTaGACGCCCAGGAGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: SGAGWGPRLTEVWSGAVGAPSSW*TPRRRS
Trigger: CGACCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGC...CCCCACCGCTCCGCTCCACACTTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCGGGAAGGTGGATCCGTaGCCCGGGGACTGGGGACCC +
Preference number: 4 (lower is better)
Translates to: ATSSAGTRGAGHEPCSSLGKVDP*PGDWGP
Trigger: GGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCC...GAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp CACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGCAAAGTGCAGCTGTGTaGTCCAGCGCCGGTCCCCTT +
Preference number: 4 (lower is better)
Translates to: HEPCSSLPGRQVAGLDHRQSAAV*SSAGPL
Trigger: AAGGGGACCGGCGCTGGATCACACAGCTGCACTTTG...CCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp GTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGAGCGGAGCTGACAGCAGCCCACGAATaGGGTCCTGAGCTTCCTCGG +
Preference number: 4 (lower is better)
Translates to: VPPSPAARWQAWITGAELTAAHE*GPELPR
Trigger: CCGAGGAAGCTCAGGACCTCATTCGTGGGCTGCTGT...CAGCTCCGCTCCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CGGCAGCAGCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCGGATAGGCACCAGCTGCTGGAGCTaGCTCAGCCGCACTTCGGCT +
Preference number: 4 (lower is better)
Translates to: RQQPEQRRTGAGNAPRIGTSCWS*LSRTSA
Trigger: AGCCGAAGTGCGGCTGAGGCAGCTCCAGCAGCTGGT...GCCTATCCGAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCG
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp CGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTGGGTCCAGCACCAGCTaGTGGAGCTGCCTCAGCCGC +
Preference number: 4 (lower is better)
Translates to: RWLPALQEPGVLGTSPVPGSSTS*WSCLSR
Trigger: GCGGCTGAGGCAGCTCCAGCAGCTGGTGCTGGACCC...AGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GACTGGGGTGAGACCGCCGGTATAGGCCACCAACCCAGTGCAGCCCAGTGTGGCACTCTGGCCCGTAGCTaGCTGCCCCAGGCCCTCCAC +
Preference number: 4 (lower is better)
Translates to: DWGETAGIGHQPSAAQCGTLARS*LPQALH
Trigger: GTGGAGGGCCTGGGGCAGGCAGCTACGGGCCAGAGT...GCCACACTGGGCTGCACTGGGTTGGTGGCCTATACCGGCGGTCTCACCCCAGTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp AGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCACTCTGGCCCGTAGCTaGCTGCCCCAGGCCCTCCAC +
Preference number: 4 (lower is better)
Translates to: SGGYQLCRNQGCWARALFTLARS*LPQALH
Trigger: GTGGAGGGCCTGGGGCAGGCAGCTACGGGCCAGAGT...GAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCGGCGAACACGCCCAGTaGCCACCAGTCACACTCTGG +
Preference number: 4 (lower is better)
Translates to: AAAVATSSAGTRGAGHEPGEHAQ*PPVTLW
Trigger: CCAGAGTGTGACTGGTGGGCACTGGGCGTGTTCGCC...GGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGGGACACTGGGGGCTaGAAGTCAAGCCCTTGCAAG +
Preference number: 4 (lower is better)
Translates to: GTSPVPPSPAARWQAWITGDTGG*KSSPCK
Trigger: CTTGCAAGGGCTTGACTTGCAGCCCCCAGTGTCCCC...TGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCTGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGCACCCAGCTCCTGGTaGACGCCCAGGAGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: AAAAAVATSSAGTRGAGHAPSSW*TPRRRS
Trigger: CGACCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGC...GTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTGAGGCACCCAGCTCCTaGTGGACGCCCAGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: AAVATSSAGTRGAGHEPCEAPSS*WTPRRR
Trigger: CCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGCCTC...ACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGCTGCAGCGTTACCGTaGTCTCTGCCTCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: GTSPVPPSPAARWQAWITAAALP*SLPQPQ
Trigger: CTGTGGCTGAGGCAGAGACCACGGTAACGCTGCAGC...TGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp AGTGTGGCGGCAGCAGCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCGGGGATCTGCGGCTCCTaGGGCCTGCAGCATCTCCAT +
Preference number: 4 (lower is better)
Translates to: SVAAAARAAANRSRQRASGICGS*GLQHLH
Trigger: ATGGAGATGCTGCAGGCCCCAGGAGCCGCAGATCCC...CGAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCGCCACACT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108473.10
CDS-3UTR CCA 90 bp AGCGGAGCTGGGTGGGGACCCAGGCTCACAGAAGTGTGGAGCGGAGCGGTGGGGGGCCATATGGGAAGGTaGATCCGTGGCCCGGGGACT +
Preference number: 4 (lower is better)
Translates to: SGAGWGPRLTEVWSGAVGGHMGR*IRGPGT
Trigger: AGTCCCCGGGCCACGGATCCACCTTCCCATATGGCC...CCCCACCGCTCCGCTCCACACTTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCT
68% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp GCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTTGTCCTGGGCTAGGTaGGAGGCACCCAGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: AAVATSSAGTRGAGHEPCLSWAR*EAPSSW
Trigger: CCAGGAGCTGGGTGCCTCTCACCTAGCCCAGGACAA...ACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp GCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCACAGCAGCCCACGAATaGGGTCCTGAGCTTCCTCGG +
Preference number: 4 (lower is better)
Translates to: AAAVATSSAGTRGAGHEPTAAHE*GPELPR
Trigger: CCGAGGAAGCTCAGGACCTCATTCGTGGGCTGCTGT...GGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp TGGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCAAAGCCCTTGCAAGTCTaGCACAGGCAACTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: WARALFLPPRPPGGRPGSKPLQV*HRQLQG
Trigger: GCCCTGCAGTTGCCTGTGTCAGACTTGCAAGGGCTT...TGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp AGCGGAGCTGGGTGGGGACCCAGGCTCACAGAAGTGTGGAGCGGAGCGGTGGGGTCAGGCTCTGCCGGGTaGGAACCTCTTCTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: SGAGWGPRLTEVWSGAVGSGSAG*EPLLPG
Trigger: CCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGA...CCCCACCGCTCCGCTCCACACTTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp TGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAACAGGTAGTCCGGGGTaGCCACAGCCACCAGCGACC +
Preference number: 4 (lower is better)
Translates to: CCSSGGYQLCRNQGCWARTGSPG*PQPPAT
Trigger: GGTCGCTGGTGGCTGTGGGCACCCCGGACTACCTGT...TCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp AGCGGAGCTGGGTGGGGACCCAGGCTCACAGAAGTGTGGAGCGGAGCGGTGGGGTCGCGGCTCAGGCTCTaGCGGGTGAGAACCTCTTCT +
Preference number: 4 (lower is better)
Translates to: SGAGWGPRLTEVWSGAVGSRLRL*RVRTSS
Trigger: AGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGA...CCCCACCGCTCCGCTCCACACTTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCAGGCCACCAACCCAGTaGAGCCCAGTGTGGCGGCAG +
Preference number: 4 (lower is better)
Translates to: LPALQEPGVLGTSPVPPSRPPTQ*SPVWRQ
Trigger: CTGCCGCCACACTGGGCTGCACTGGGTTGGTGGCCT...GGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCCCAGCTGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGTCCAGCACCAGCTGCTaGAGCTGCCTCAGCCGCACT +
Preference number: 4 (lower is better)
Translates to: AQLLQQRWLPALQEPGVLSSTSC*SCLSRT
Trigger: AGTGCGGCTGAGGCAGCTCCAGCAGCTGGTGCTGGA...CAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGCTGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp CAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTTCCAGCACCAGCTGCTaGAGCTGCCTCAGCCGCACT +
Preference number: 4 (lower is better)
Translates to: QQRWLPALQEPGVLGTSPSSTSC*SCLSRT
Trigger: AGTGCGGCTGAGGCAGCTCCAGCAGCTGGTGCTGGA...AGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp CAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTCAGTCCCAGGAAGCCTaGGTCCAGCACCAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: QQRWLPALQEPGVLGTSPQSQEA*VQHQLL
Trigger: CAGCAGCTGGTGCTGGACCCAGGCTTCCTGGGACTG...AGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GACTGGGGTGAGACCGCCGGTATAGGCCACCAACCCAGTGCAGCCCAGTGTGGCGCACCCAGCTCCTGGTaGACGCCCAGGAGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: DWGETAGIGHQPSAAQCGAPSSW*TPRRRS
Trigger: CGACCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGC...GCCACACTGGGCTGCACTGGGTTGGTGGCCTATACCGGCGGTCTCACCCCAGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp CAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTGAGGCACCCAGCTCCTaGTGGACGCCCAGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: QRWLPALQEPGVLGTSPVEAPSS*WTPRRR
Trigger: CCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGCCTC...AACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp CTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCGAGGCACCCAGCTCCTaGTGGACGCCCAGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: LPALQEPGVLGTSPVPPSEAPSS*WTPRRR
Trigger: CCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGCCTC...GGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp TGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGAGGCACCCAGCTCCTaGTGGACGCCCAGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: CCSSGGYQLCRNQGCWAREAPSS*WTPRRR
Trigger: CCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGCCTC...TCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp TGGGCACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCATCTTCCAGGGCTTCCTaGAGCTGCTGCAGCGTTACC +
Preference number: 4 (lower is better)
Translates to: WARALFLPPRPPGGRPGSSSRAS*SCCSVT
Trigger: GGTAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGA...TGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp CGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTTTGTCCTGGGCTAGGTaGGAGGCACCCAGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: RWLPALQEPGVLGTSPVPLSWAR*EAPSSW
Trigger: CCAGGAGCTGGGTGCCTCTCACCTAGCCCAGGACAA...AGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp GACTGGGGTGAGACCGCCGGTATAGGCCACCAACCCAGTGCAGCCCAGTGTGGCTTGTCCTGGGCTAGGTaGGAGGCACCCAGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: DWGETAGIGHQPSAAQCGLSWAR*EAPSSW
Trigger: CCAGGAGCTGGGTGCCTCTCACCTAGCCCAGGACAA...GCCACACTGGGCTGCACTGGGTTGGTGGCCTATACCGGCGGTCTCACCCCAGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp GTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGAGCGGAGCTGCGGAGTCTATGGCCATaGCAATCTCGGCCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: VPPSPAARWQAWITGAELRSLWP*QSRPGR
Trigger: TCTACCTGGCCGAGATTGTCATGGCCATAGACTCCG...CAGCTCCGCTCCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp CACGAGCCCTGTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGCGGAGTCTATGGCCATaGCAATCTCGGCCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: HEPCSSLPGRQVAGLDHRRSLWP*QSRPGR
Trigger: TCTACCTGGCCGAGATTGTCATGGCCATAGACTCCG...CCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp GCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCCATCAGGCTGCAGTTTaGGGCAGGAGCCGAAGTCTG +
Preference number: 4 (lower is better)
Translates to: AAAVATSSAGTRGAGHEPHQAAV*GRSRSL
Trigger: CAGACTTCGGCTCCTGCCTCAAACTGCAGCCTGATG...GGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp CAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCGCTCACCATGGCAGTaGGCCGGTCCTCCACCACAT +
Preference number: 4 (lower is better)
Translates to: QRWLPALQEPGVLGTSPVRSPWQ*AGPPPH
Trigger: ATGTGGTGGAGGACCGGCTCACTGCCATGGTGAGCG...AACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
CDS-3UTR TCA 90 bp GCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCGGATAGGCCAGGCCTATCAGGCTCTGCCGGGTaGGAACCTCTTCTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: ARAAANRSRQRASDRPGLSGSAG*EPLLPG
Trigger: CCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGA...TAGGCCTGGCCTATCCGAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp CAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTTCAGGCTCTGCCGGGTaGGAACCTCTTCTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: QQRWLPALQEPGVLGTSPSGSAG*EPLLPG
Trigger: CCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGA...AGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTACCAGCTGCTGGAGCTaGCTCAGCCGCACTTCGGCT +
Preference number: 4 (lower is better)
Translates to: RWLPALQEPGVLGTSPVPTSCWS*LSRTSA
Trigger: AGCCGAAGTGCGGCTGAGGCAGCTCCAGCAGCTGGT...AGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp TGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAACCAGCTGCTGGAGCTaGCTCAGCCGCACTTCGGCT +
Preference number: 4 (lower is better)
Translates to: CCSSGGYQLCRNQGCWARTSCWS*LSRTSA
Trigger: AGCCGAAGTGCGGCTGAGGCAGCTCCAGCAGCTGGT...TCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp TGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCACCAGCTGCTGGAGCTaGCTCAGCCGCACTTCGGCT +
Preference number: 4 (lower is better)
Translates to: WLPALQEPGVLGTSPVPPTSCWS*LSRTSA
Trigger: AGCCGAAGTGCGGCTGAGGCAGCTCCAGCAGCTGGT...GGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CGGCAGCAGCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCGGATAGGCTCTGCCAGGCGAATGTaGCCACATCGGTCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: RQQPEQRRTGAGNAPRIGSARRM*PHRSSR
Trigger: TCTGCTGGACCGATGTGGGCACATTCGCCTGGCAGA...GCCTATCCGAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCG
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp CAGTGTGGCGGCAGCAGCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCCCTCCACCAACGGCCTaGAGAATCTCAGGAGACAGG +
Preference number: 4 (lower is better)
Translates to: QCGGSSQSSGEQEQATRLPPPTA*RISGDR
Trigger: CCTGTCTCCTGAGATTCTGCAGGCCGTTGGTGGAGG...GAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCGCCACACTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp AGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCTCCAGCACCAGCTGCTaGAGCTGCCTCAGCCGCACT +
Preference number: 4 (lower is better)
Translates to: SGGYQLCRNQGCWARALFSSTSC*SCLSRT
Trigger: AGTGCGGCTGAGGCAGCTCCAGCAGCTGGTGCTGGA...GAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp TGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGATCCAGCACCAGCTGCTaGAGCTGCCTCAGCCGCACT +
Preference number: 4 (lower is better)
Translates to: CCSSGGYQLCRNQGCWARSSTSC*SCLSRT
Trigger: AGTGCGGCTGAGGCAGCTCCAGCAGCTGGTGCTGGA...TCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCAGTCCCAGGAAGCCTaGGTCCAGCACCAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: ATSSAGTRGAGHEPCSSLQSQEA*VQHQLL
Trigger: CAGCAGCTGGTGCTGGACCCAGGCTTCCTGGGACTG...GAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp AGCGGAGCTGGGTGGGGACCCAGGCTCACAGAAGTGTGGAGCGGAGCGGTGGGGCATATGTCTCGGCTGTaGAGTCCGCGTAGAAGGGGG +
Preference number: 4 (lower is better)
Translates to: SGAGWGPRLTEVWSGAVGHMSRL*SPRRRG
Trigger: CCCCCTTCTACGCGGACTCCACAGCCGAGACATATG...CCCCACCGCTCCGCTCCACACTTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCGGATAGGCCAGGCCTAGCTGCAGCGTTACCGTaGTCTCTGCCTCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: ARAAANRSRQRASDRPGLAAALP*SLPQPQ
Trigger: CTGTGGCTGAGGCAGAGACCACGGTAACGCTGCAGC...TAGGCCTGGCCTATCCGAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGC
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp CAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCAAAGTGCAGCTGTGTaGTCCAGCGCCGGTCCCCTT +
Preference number: 4 (lower is better)
Translates to: QRWLPALQEPGVLGTSPVQSAAV*SSAGPL
Trigger: AAGGGGACCGGCGCTGGATCACACAGCTGCACTTTG...AACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp TGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGACAAAGTGCAGCTGTGTaGTCCAGCGCCGGTCCCCTT +
Preference number: 4 (lower is better)
Translates to: CCSSGGYQLCRNQGCWARQSAAV*SSAGPL
Trigger: AAGGGGACCGGCGCTGGATCACACAGCTGCACTTTG...TCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp CAGTGTGGCGGCAGCAGCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCCGGAGTCTATGGCCATaGCAATCTCGGCCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: QCGGSSQSSGEQEQATRLRSLWP*QSRPGR
Trigger: TCTACCTGGCCGAGATTGTCATGGCCATAGACTCCG...GAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCGCCACACTG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp TGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCACAGCAGCCCACGAATaGGGTCCTGAGCTTCCTCGG +
Preference number: 4 (lower is better)
Translates to: WLPALQEPGVLGTSPVPPTAAHE*GPELPR
Trigger: CCGAGGAAGCTCAGGACCTCATTCGTGGGCTGCTGT...GGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp GCCCAGCTGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGAAGCCCTTGCAAGTCTaGCACAGGCAACTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: AQLLQQRWLPALQEPGVLKPLQV*HRQLQG
Trigger: GCCCTGCAGTTGCCTGTGTCAGACTTGCAAGGGCTT...CAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGCTGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp TGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCAGGCTCTGCCGGGTaGGAACCTCTTCTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: WLPALQEPGVLGTSPVPPSGSAG*EPLLPG
Trigger: CCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGA...GGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp AGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCTCAGGCTCTGCCGGGTaGGAACCTCTTCTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: SGGYQLCRNQGCWARALFSGSAG*EPLLPG
Trigger: CCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGA...GAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GCCCAGCTGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGTCTGCCAGGCGAATGTaGCCACATCGGTCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: AQLLQQRWLPALQEPGVLSARRM*PHRSSR
Trigger: TCTGCTGGACCGATGTGGGCACATTCGCCTGGCAGA...CAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGCTGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCACCATTCCATCAGGCTaGAGTTTGAGGCAGGAGCCG +
Preference number: 4 (lower is better)
Translates to: AAAVATSSAGTRGAGHEPTIPSG*SLRQEP
Trigger: CGGCTCCTGCCTCAAACTGCAGCCTGATGGAATGGT...GGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GCTGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACCCTCCACCAACGGCCTaGAGAATCTCAGGAGACAGG +
Preference number: 4 (lower is better)
Translates to: AAAAAVATSSAGTRGAGHPPPTA*RISGDR
Trigger: CCTGTCTCCTGAGATTCTGCAGGCCGTTGGTGGAGG...GTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CTGAGTAAAGCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTGGCTACCAACTCTGGCCCGTAGCTaGCTGCCCCAGGCCCTCCAC +
Preference number: 4 (lower is better)
Translates to: LSKARSANAQLLQQRWLPTLARS*LPQALH
Trigger: GTGGAGGGCCTGGGGCAGGCAGCTACGGGCCAGAGT...TGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp AGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCGGGGACACTGGGGGCTaGAAGTCAAGCCCTTGCAAG +
Preference number: 4 (lower is better)
Translates to: SGGYQLCRNQGCWARALFGDTGG*KSSPCK
Trigger: CTTGCAAGGGCTTGACTTGCAGCCCCCAGTGTCCCC...GAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp TGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCGCGGCTCAGGCTCTaGCGGGTGAGAACCTCTTCT +
Preference number: 4 (lower is better)
Translates to: WLPALQEPGVLGTSPVPPSRLRL*RVRTSS
Trigger: AGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGA...GGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTTCGCGGCTCAGGCTCTaGCGGGTGAGAACCTCTTCT +
Preference number: 4 (lower is better)
Translates to: RWLPALQEPGVLGTSPVPSRLRL*RVRTSS
Trigger: AGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGA...AGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTCATATGTCTCGGCTGTaGAGTCCGCGTAGAAGGGGG +
Preference number: 4 (lower is better)
Translates to: AAVATSSAGTRGAGHEPCHMSRL*SPRRRG
Trigger: CCCCCTTCTACGCGGACTCCACAGCCGAGACATATG...ACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp TGGCGGCAGCAGCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCGGATATCTTCCAGGGCTTCCTaGAGCTGCTGCAGCGTTACC +
Preference number: 4 (lower is better)
Translates to: WRQQPEQRRTGAGNAPRISSRAS*SCCSVT
Trigger: GGTAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGA...TATCCGAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp GCCCAGCTGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGTGGAGAAGTTCTGGTTaGCGGTCCGGATGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: AQLLQQRWLPALQEPGVLWRSSG*RSGWPP
Trigger: TGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCA...CAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGCTGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp AGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCATCAGGCTGCAGTTTaGGGCAGGAGCCGAAGTCTG +
Preference number: 4 (lower is better)
Translates to: SGGYQLCRNQGCWARALFHQAAV*GRSRSL
Trigger: CAGACTTCGGCTCCTGCCTCAAACTGCAGCCTGATG...GAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp TGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAAAGCCCTTGCAAGTCTaGCACAGGCAACTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: CCSSGGYQLCRNQGCWARKPLQV*HRQLQG
Trigger: GCCCTGCAGTTGCCTGTGTCAGACTTGCAAGGGCTT...TCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTTCCGCTCCCCAAACTTaGTCAGCAGCGTTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: QQRWLPALQEPGVLGTSPSAPQT*SAALAG
Trigger: ACCTGCTAACGCTGCTGAGCAAGTTTGGGGAGCGGA...AGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCTCTGCCAGGCGAATGTaGCCACATCGGTCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: LPALQEPGVLGTSPVPPSSARRM*PHRSSR
Trigger: TCTGCTGGACCGATGTGGGCACATTCGCCTGGCAGA...GGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTACCATTCCATCAGGCTaGAGTTTGAGGCAGGAGCCG +
Preference number: 4 (lower is better)
Translates to: QQRWLPALQEPGVLGTSPTIPSG*SLRQEP
Trigger: CGGCTCCTGCCTCAAACTGCAGCCTGATGGAATGGT...AGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTACCATTCCATCAGGCTaGAGTTTGAGGCAGGAGCCG +
Preference number: 4 (lower is better)
Translates to: AAVATSSAGTRGAGHEPCTIPSG*SLRQEP
Trigger: CGGCTCCTGCCTCAAACTGCAGCCTGATGGAATGGT...ACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CTGAGTAAAGCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTGGCTACCAACAGGTAGTCCGGGGTaGCCACAGCCACCAGCGACC +
Preference number: 4 (lower is better)
Translates to: LSKARSANAQLLQQRWLPTGSPG*PQPPAT
Trigger: GGTCGCTGGTGGCTGTGGGCACCCCGGACTACCTGT...TGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp CTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCTCTTCCAGGGCTTCCTaGAGCTGCTGCAGCGTTACC +
Preference number: 4 (lower is better)
Translates to: LPALQEPGVLGTSPVPPSSSRAS*SCCSVT
Trigger: GGTAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGA...GGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp TGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGATCTTCCAGGGCTTCCTaGAGCTGCTGCAGCGTTACC +
Preference number: 4 (lower is better)
Translates to: CCSSGGYQLCRNQGCWARSSRAS*SCCSVT
Trigger: GGTAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGA...TCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp TGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCTTCCAGGGCTTCCTaGAGCTGCTGCAGCGTTACC +
Preference number: 4 (lower is better)
Translates to: WLPALQEPGVLGTSPVPPSSRAS*SCCSVT
Trigger: GGTAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGA...GGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp AGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCTGGAGAAGTTCTGGTTaGCGGTCCGGATGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: SGGYQLCRNQGCWARALFWRSSG*RSGWPP
Trigger: TGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCA...GAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp GCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCGGAGTCTATGGCCATaGCAATCTCGGCCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: ATSSAGTRGAGHEPCSSLRSLWP*QSRPGR
Trigger: TCTACCTGGCCGAGATTGTCATGGCCATAGACTCCG...GAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp CTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCCGGAGTCTATGGCCATaGCAATCTCGGCCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: LPALQEPGVLGTSPVPPSRSLWP*QSRPGR
Trigger: TCTACCTGGCCGAGATTGTCATGGCCATAGACTCCG...GGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGAGCGGAGCTGTCAAAATCATCCCTCTaGAGTCGGACCTCCTTAAGC +
Preference number: 4 (lower is better)
Translates to: VPPSPAARWQAWITGAELSKSSL*SRTSLS
Trigger: GCTTAAGGAGGTCCGACTGCAGAGGGATGATTTTGA...CAGCTCCGCTCCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCTCCGCTCCCCAAACTTaGTCAGCAGCGTTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: ATSSAGTRGAGHEPCSSLSAPQT*SAALAG
Trigger: ACCTGCTAACGCTGCTGAGCAAGTTTGGGGAGCGGA...GAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp TGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAACCATTCCATCAGGCTaGAGTTTGAGGCAGGAGCCG +
Preference number: 4 (lower is better)
Translates to: CCSSGGYQLCRNQGCWARTIPSG*SLRQEP
Trigger: CGGCTCCTGCCTCAAACTGCAGCCTGATGGAATGGT...TCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CTGAGTAAAGCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTGGCTACCAGGCGAACACGCCCAGTaGCCACCAGTCACACTCTGG +
Preference number: 4 (lower is better)
Translates to: LSKARSANAQLLQQRWLPGEHAQ*PPVTLW
Trigger: CCAGAGTGTGACTGGTGGGCACTGGGCGTGTTCGCC...TGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTCTGACACAGGCAACTaGAGGGCCTCTAGTTCCATA +
Preference number: 4 (lower is better)
Translates to: AAAVATSSAGTRGAGHEPSDTGN*RASSSI
Trigger: TATGGAACTAGAGGCCCTGCAGTTGCCTGTGTCAGA...GGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CAGTGTGGCGGCAGCAGCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCTGCAAGTCAAGCCCTTaGAAGTCTGACACAGGCAAC +
Preference number: 4 (lower is better)
Translates to: QCGGSSQSSGEQEQATRLCKSSP*KSDTGN
Trigger: GTTGCCTGTGTCAGACTTGCAAGGGCTTGACTTGCA...GAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCGCCACACTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp GCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCTGTAGCTGCCGAACATaGGCCTCCAGGTCTCGGTTT +
Preference number: 4 (lower is better)
Translates to: ATSSAGTRGAGHEPCSSLCSCRT*ASRSRF
Trigger: AAACCGAGACCTGGAGGCGCATGTTCGGCAGCTACA...GAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCTGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACAATTGCATGTGTCCGTaGCACCCTCGAAGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: AAAAAVATSSAGTRGAGHNCMCP*HPRSLV
Trigger: CACCAGACTTCGAGGGTGCCACGGACACATGCAATT...GTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp TGTGTGCTGGCAGAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGCGGTGCATGGGGCCTaGCCCCACCAGCGGGCACTG +
Preference number: 4 (lower is better)
Translates to: CVLAEVLLIHHYGNGMSLAVHGA*PHQRAL
Trigger: CAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGC...CAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTCTGCCAGCACACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
CDS-3UTR CCA 90 bp CTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCAATTGCATGTGTCCGTaGCACCCTCGAAGTCTGCCC +
Preference number: 4 (lower is better)
Translates to: LPALQEPGVLGTSPVPPSNCMCP*HPRSLP
Trigger: GGGCAGACTTCGAGGGTGCCACGGACACATGCAATT...GGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108474.2
CDS-3UTR CCA 90 bp CTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCATTTGGCGAGAAGCATaGGAAGGTGGATCCGTGGCC +
Preference number: 4 (lower is better)
Translates to: LPALQEPGVLGTSPVPPSIWREA*EGGSVA
Trigger: GGCCACGGATCCACCTTCCCATGCTTCTCGCCAAAT...GGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp GCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTGCAAGTCAAGCCCTTaGAAGTCTGACACAGGCAAC +
Preference number: 4 (lower is better)
Translates to: AAVATSSAGTRGAGHEPCCKSSP*KSDTGN
Trigger: GTTGCCTGTGTCAGACTTGCAAGGGCTTGACTTGCA...ACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CTGAGTAAAGCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTGGCTACCAGGGGACACTGGGGGCTaGAAGTCAAGCCCTTGCAAG +
Preference number: 4 (lower is better)
Translates to: LSKARSANAQLLQQRWLPGDTGG*KSSPCK
Trigger: CTTGCAAGGGCTTGACTTGCAGCCCCCAGTGTCCCC...TGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CTGAGTAAAGCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTGGCTACCATCGCGGCTCAGGCTCTaGCGGGTGAGAACCTCTTCT +
Preference number: 4 (lower is better)
Translates to: LSKARSANAQLLQQRWLPSRLRL*RVRTSS
Trigger: AGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGA...TGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GTTCCTCCCTCCCCGGCCGCCAGGTGGCAGGCCTGGATCACAGGAGCGGAGCTGCAGCAGAATGTTATCTaGTTTGATGTCCCTGTGCAC +
Preference number: 4 (lower is better)
Translates to: VPPSPAARWQAWITGAELQQNVI*FDVPVH
Trigger: GTGCACAGGGACATCAAACCAGATAACATTCTGCTG...CAGCTCCGCTCCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp TGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAAATTGCATGTGTCCGTaGCACCCTCGAAGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: CCSSGGYQLCRNQGCWARNCMCP*HPRSLV
Trigger: CACCAGACTTCGAGGGTGCCACGGACACATGCAATT...TCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCGGGAAGGTGGATCCGTaGCCCGGGGACTGGGGACCC +
Preference number: 4 (lower is better)
Translates to: EVLLIHHYGNGMSLEIGGGKVDP*PGDWGP
Trigger: GGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCC...GCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp ACCGAGGAATGTCGAGTCTCAATGCATCTAAAACGTGGGTCCCGGAGTCTGTCAGGTGACGGCGGTGCATaGGGCCTGGCCCCACCAGCG +
Preference number: 4 (lower is better)
Translates to: TEECRVSMHLKRGSRSLSGDGGA*GLAPPA
Trigger: CGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACC...TGACAGACTCCGGGACCCACGTTTTAGATGCATTGAGACTCGACATTCCTCGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
CDS-3UTR TCA 90 bp GCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCGAATGTTATCTGGTTTaGTGTCCCTGTGCACGTAGC +
Preference number: 4 (lower is better)
Translates to: AVATSSAGTRGAGHEPCSECYLV*CPCARS
Trigger: GCTACGTGCACAGGGACATCAAACCAGATAACATTC...GGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp ATGGCTTGGAGTCTTAGGGTTCAGGGGGCGAAGGTGGCTCCCGGGAAACACCAGCATCAGGCTGCAGTTTaGGGCAGGAGCCGAAGTCTG +
Preference number: 4 (lower is better)
Translates to: MAWSLRVQGAKVAPGKHQHQAAV*GRSRSL
Trigger: CAGACTTCGGCTCCTGCCTCAAACTGCAGCCTGATG...CTGGTGTTTCCCGGGAGCCACCTTCGCCCCCTGAACCCTAAGACTCCAAGCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp CCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGCTGCAGGGAGCAGCAGGTaGCGGCGGTGCATGGGGCCT +
Preference number: 4 (lower is better)
Translates to: PSLWEWDVPGNRGLMLMAAGSSR*RRCMGP
Trigger: AGGCCCCATGCACCGCCGTCACCTGCTGCTCCCTGC...AGCCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
CDS-3UTR GCA 90 bp CAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTTCAAAATCATCCCTCTaGAGTCGGACCTCCTTAAGC +
Preference number: 4 (lower is better)
Translates to: QQRWLPALQEPGVLGTSPSKSSL*SRTSLS
Trigger: GCTTAAGGAGGTCCGACTGCAGAGGGATGATTTTGA...AGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CTGAGTAAAGCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTGGCTACCACCTCCACCAACGGCCTaGAGAATCTCAGGAGACAGG +
Preference number: 4 (lower is better)
Translates to: LSKARSANAQLLQQRWLPPPPTA*RISGDR
Trigger: CCTGTCTCCTGAGATTCTGCAGGCCGTTGGTGGAGG...TGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCTCTGACACAGGCAACTaGAGGGCCTCTAGTTCCATA +
Preference number: 4 (lower is better)
Translates to: ATSSAGTRGAGHEPCSSLSDTGN*RASSSI
Trigger: TATGGAACTAGAGGCCCTGCAGTTGCCTGTGTCAGA...GAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTTCTGACACAGGCAACTaGAGGGCCTCTAGTTCCATA +
Preference number: 4 (lower is better)
Translates to: RWLPALQEPGVLGTSPVPSDTGN*RASSSI
Trigger: TATGGAACTAGAGGCCCTGCAGTTGCCTGTGTCAGA...AGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp CTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCTGCAAGTCAAGCCCTTaGAAGTCTGACACAGGCAAC +
Preference number: 4 (lower is better)
Translates to: LPALQEPGVLGTSPVPPSCKSSP*KSDTGN
Trigger: GTTGCCTGTGTCAGACTTGCAAGGGCTTGACTTGCA...GGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp CGGCAGCAGCCAGAGCAGCGGCGAACAGGAGCAGGCAACGCGCCTCGGATAGGCTTCATGGCATACACTTaGCCCGTCTGTTTCATCTTC +
Preference number: 4 (lower is better)
Translates to: RQQPEQRRTGAGNAPRIGFMAYT*PVCFIF
Trigger: GAAGATGAAACAGACGGGCCAAGTGTATGCCATGAA...GCCTATCCGAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp AGCGGAGCTGGGTGGGGACCCAGGCTCACAGAAGTGTGGAGCGGAGCGGTGGGGAAGAAAGGATGTTTCTaGAAATCACCTGCCCCACCT +
Preference number: 4 (lower is better)
Translates to: SGAGWGPRLTEVWSGAVGKKGCF*KSPAPP
Trigger: AGGTGGGGCAGGTGATTTCCAGAAACATCCTTTCTT...CCCCACCGCTCCGCTCCACACTTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp CTGAGTAAAGCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTGGCTACCATGGAGAAGTTCTGGTTaGCGGTCCGGATGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: LSKARSANAQLLQQRWLPWRSSG*RSGWPP
Trigger: TGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCA...TGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCAGGGAAGGTGGATCCGTaGCCCGGGGACTGGGGACCC +
Preference number: 4 (lower is better)
Translates to: VLLIHHYGNGMSLEIGGSGKVDP*PGDWGP
Trigger: GGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCC...TGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp GCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCGAATGTTATCTGGTTTaGTGTCCCTGTGCACGTAGC +
Preference number: 4 (lower is better)
Translates to: ATSSAGTRGAGHEPCSSLECYLV*CPCARS
Trigger: GCTACGTGCACAGGGACATCAAACCAGATAACATTC...GAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp CAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTGAATGTTATCTGGTTTaGTGTCCCTGTGCACGTAGC +
Preference number: 4 (lower is better)
Translates to: QRWLPALQEPGVLGTSPVECYLV*CPCARS
Trigger: GCTACGTGCACAGGGACATCAAACCAGATAACATTC...AACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GGCAGACCAGAAGTATTTTATTCGCAAGGGTCGGGAGTGGAGGTCGTAGGTGGGCAGTCCCAGGAAGCCTaGGTCCAGCACCAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: GRPEVFYSQGSGVEVVGGQSQEA*VQHQLL
Trigger: CAGCAGCTGGTGCTGGACCCAGGCTTCCTGGGACTG...CCCACCTACGACCTCCACTCCCGACCCTTGCGAATAAAATACTTCTGGTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp TGTGTGCTGGCAGAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGCACCCAGCTCCTGGTaGACGCCCAGGAGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: CVLAEVLLIHHYGNGMSLAPSSW*TPRRRS
Trigger: CGACCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGC...CAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTCTGCCAGCACACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp GCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTTCATGGCATACACTTaGCCCGTCTGTTTCATCTTC +
Preference number: 4 (lower is better)
Translates to: AAVATSSAGTRGAGHEPCFMAYT*PVCFIF
Trigger: GAAGATGAAACAGACGGGCCAAGTGTATGCCATGAA...ACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTCAGCAGAATGTTATCTaGTTTGATGTCCCTGTGCAC +
Preference number: 4 (lower is better)
Translates to: AAVATSSAGTRGAGHEPCQQNVI*FDVPVH
Trigger: GTGCACAGGGACATCAAACCAGATAACATTCTGCTG...ACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GCTGCTGCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACAAGAAAGGATGTTTCTaGAAATCACCTGCCCCACCT +
Preference number: 4 (lower is better)
Translates to: AAAAAVATSSAGTRGAGHKKGCF*KSPAPP
Trigger: AGGTGGGGCAGGTGATTTCCAGAAACATCCTTTCTT...GTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR GCA 90 bp GAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCACCAGCTGCTGGAGCTaGCTCAGCCGCACTTCGGCT +
Preference number: 4 (lower is better)
Translates to: EVLLIHHYGNGMSLEIGGTSCWS*LSRTSA
Trigger: AGCCGAAGTGCGGCTGAGGCAGCTCCAGCAGCTGGT...GCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp CTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCCCTCCTTCATGGCATACACTTaGCCCGTCTGTTTCATCTTC +
Preference number: 4 (lower is better)
Translates to: LPALQEPGVLGTSPVPPSFMAYT*PVCFIF
Trigger: GAAGATGAAACAGACGGGCCAAGTGTATGCCATGAA...GGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR TCA 90 bp CAGACCAGAAGTATTTTATTCGCAAGGGTCGGGAGTGGAGGTCGTAGGTGGGGAACAGCAGCCCACGAATaGGGTCCTGAGCTTCCTCGG +
Preference number: 4 (lower is better)
Translates to: QTRSILFARVGSGGRRWGTAAHE*GPELPR
Trigger: CCGAGGAAGCTCAGGACCTCATTCGTGGGCTGCTGT...TCCCCACCTACGACCTCCACTCCCGACCCTTGCGAATAAAATACTTCTGGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp ACCGAGGAATGTCGAGTCTCAATGCATCTAAAACGTGGGTCCCGGAGTCTGTCACGCTCACCATGGCAGTaGGCCGGTCCTCCACCACAT +
Preference number: 4 (lower is better)
Translates to: TEECRVSMHLKRGSRSLSRSPWQ*AGPPPH
Trigger: ATGTGGTGGAGGACCGGCTCACTGCCATGGTGAGCG...TGACAGACTCCGGGACCCACGTTTTAGATGCATTGAGACTCGACATTCCTCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
CDS-3UTR GCA 90 bp ATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGACAGGTAGTCCGGGGTaGCCACAGCCACCAGCGACC +
Preference number: 4 (lower is better)
Translates to: IHHYGNGMSLEIGGSCLWTGSPG*PQPPAT
Trigger: GGTCGCTGGTGGCTGTGGGCACCCCGGACTACCTGT...CCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp ATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGAGGCCACCAACCCAGTaGAGCCCAGTGTGGCGGCAG +
Preference number: 4 (lower is better)
Translates to: IHHYGNGMSLEIGGSCLWRPPTQ*SPVWRQ
Trigger: CTGCCGCCACACTGGGCTGCACTGGGTTGGTGGCCT...CCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
CDS-3UTR CCA 90 bp ATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGGAGGCACCCAGCTCCTaGTGGACGCCCAGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: IHHYGNGMSLEIGGSCLWEAPSS*WTPRRR
Trigger: CCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGCCTC...CCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp TGTGTGCTGGCAGAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGCTGCAGCGTTACCGTaGTCTCTGCCTCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: CVLAEVLLIHHYGNGMSLAAALP*SLPQPQ
Trigger: CTGTGGCTGAGGCAGAGACCACGGTAACGCTGCAGC...CAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTCTGCCAGCACACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp ACCGAGGAATGTCGAGTCTCAATGCATCTAAAACGTGGGTCCCGGAGTCTGTCACAAAGTGCAGCTGTGTaGTCCAGCGCCGGTCCCCTT +
Preference number: 4 (lower is better)
Translates to: TEECRVSMHLKRGSRSLSQSAAV*SSAGPL
Trigger: AAGGGGACCGGCGCTGGATCACACAGCTGCACTTTG...TGACAGACTCCGGGACCCACGTTTTAGATGCATTGAGACTCGACATTCCTCGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp ATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGCGCTCACCATGGCAGTaGGCCGGTCCTCCACCACAT +
Preference number: 4 (lower is better)
Translates to: IHHYGNGMSLEIGGSCLWRSPWQ*AGPPPH
Trigger: ATGTGGTGGAGGACCGGCTCACTGCCATGGTGAGCG...CCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
CDS-3UTR TCA 90 bp TGTGTGCTGGCAGAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGAAGCCCTTGCAAGTCTaGCACAGGCAACTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: CVLAEVLLIHHYGNGMSLKPLQV*HRQLQG
Trigger: GCCCTGCAGTTGCCTGTGTCAGACTTGCAAGGGCTT...CAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTCTGCCAGCACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp CTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTAGAGAGAAGGGACAGGTaGCCCGATCGGAGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: LIHHYGNGMSLEIGGSCLERRDR*PDRSPA
Trigger: TGCTGGGCTCCGATCGGGTCACCTGTCCCTTCTCTC...TAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp TGTGTGCTGGCAGAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGCCTCCACCAACGGCCTaGAGAATCTCAGGAGACAGG +
Preference number: 4 (lower is better)
Translates to: CVLAEVLLIHHYGNGMSLPPPTA*RISGDR
Trigger: CCTGTCTCCTGAGATTCTGCAGGCCGTTGGTGGAGG...CAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTCTGCCAGCACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp GGCAGACCAGAAGTATTTTATTCGCAAGGGTCGGGAGTGGAGGTCGTAGGTGGGTGTAGCTGCCGAACATaGGCCTCCAGGTCTCGGTTT +
Preference number: 4 (lower is better)
Translates to: GRPEVFYSQGSGVEVVGGCSCRT*ASRSRF
Trigger: AAACCGAGACCTGGAGGCGCATGTTCGGCAGCTACA...CCCACCTACGACCTCCACTCCCGACCCTTGCGAATAAAATACTTCTGGTCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
3UTR CAA 72 bp CCGAAGCCAAAGACTCCGTGTGTGCTGGCAGAGGTCTaGCTGATCCATCACTATGGGAATGGGATGTCCCTG +
Preference number: 4 (lower is better)
Translates to: PKPKTPCVLAEV*LIHHYGNGMSL
Trigger: CAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTCTGCCAGCACACACGGAGTCTTTGGCTTCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp ACCGAGGAATGTCGAGTCTCAATGCATCTAAAACGTGGGTCCCGGAGTCTGTCACATCAGGCTGCAGTTTaGGGCAGGAGCCGAAGTCTG +
Preference number: 4 (lower is better)
Translates to: TEECRVSMHLKRGSRSLSHQAAV*GRSRSL
Trigger: CAGACTTCGGCTCCTGCCTCAAACTGCAGCCTGATG...TGACAGACTCCGGGACCCACGTTTTAGATGCATTGAGACTCGACATTCCTCGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp TTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAGCTGACTCTGGCCCGTAGCTaGCTGCCCCAGGCCCTCCAC +
Preference number: 4 (lower is better)
Translates to: LWLVTDGWESEKVKSDELTLARS*LPQALH
Trigger: GTGGAGGGCCTGGGGCAGGCAGCTACGGGCCAGAGT...CAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp ATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGTCGCGGCTCAGGCTCTaGCGGGTGAGAACCTCTTCT +
Preference number: 4 (lower is better)
Translates to: IHHYGNGMSLEIGGSCLWSRLRL*RVRTSS
Trigger: AGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGA...CCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp TCAGTGAGTCAGATAACAAGATCAATAAATACCCACACTGCTTTGGGGGAGGGGAGGCCACCAACCCAGTaGAGCCCAGTGTGGCGGCAG +
Preference number: 4 (lower is better)
Translates to: SVSQITRSINTHTALGEGRPPTQ*SPVWRQ
Trigger: CTGCCGCCACACTGGGCTGCACTGGGTTGGTGGCCT...CCCCTCCCCCAAAGCAGTGTGGGTATTTATTGATCTTGTTATCTGACTCACTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032568.14
ENSMUST00000108474.2
CDS-3UTR CCA 90 bp CTGAGTAAAGCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTGGCTACCAAAGAAAGGATGTTTCTaGAAATCACCTGCCCCACCT +
Preference number: 4 (lower is better)
Translates to: LSKARSANAQLLQQRWLPKKGCF*KSPAPP
Trigger: AGGTGGGGCAGGTGATTTCCAGAAACATCCTTTCTT...TGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CCA 90 bp GGCAGACCAGAAGTATTTTATTCGCAAGGGTCGGGAGTGGAGGTCGTAGGTGGGAATTGCATGTGTCCGTaGCACCCTCGAAGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: GRPEVFYSQGSGVEVVGGNCMCP*HPRSLV
Trigger: CACCAGACTTCGAGGGTGCCACGGACACATGCAATT...CCCACCTACGACCTCCACTCCCGACCCTTGCGAATAAAATACTTCTGGTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp ATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGTCTGCCAGGCGAATGTaGCCACATCGGTCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: IHHYGNGMSLEIGGSCLWSARRM*PHRSSR
Trigger: TCTGCTGGACCGATGTGGGCACATTCGCCTGGCAGA...CCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp TCAGTGAGTCAGATAACAAGATCAATAAATACCCACACTGCTTTGGGGGAGGGGGGCGAACACGCCCAGTaGCCACCAGTCACACTCTGG +
Preference number: 4 (lower is better)
Translates to: SVSQITRSINTHTALGEGGEHAQ*PPVTLW
Trigger: CCAGAGTGTGACTGGTGGGCACTGGGCGTGTTCGCC...CCCCTCCCCCAAAGCAGTGTGGGTATTTATTGATCTTGTTATCTGACTCACTGA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp CTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAGCTGAGCAGTGGCGAACACGCCCAGTaGCCACCAGTCACACTCTGG +
Preference number: 4 (lower is better)
Translates to: LVTDGWESEKVKSDELSSGEHAQ*PPVTLW
Trigger: CCAGAGTGTGACTGGTGGGCACTGGGCGTGTTCGCC...ACTGCTCAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp CCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGCTTGTAGCTGCCGAACATaGGCCTCCAGGTCTCGGTTT +
Preference number: 4 (lower is better)
Translates to: PSLWEWDVPGNRGLMLMACSCRT*ASRSRF
Trigger: AAACCGAGACCTGGAGGCGCATGTTCGGCAGCTACA...AGCCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp ATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGTGGAGAAGTTCTGGTTaGCGGTCCGGATGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: IHHYGNGMSLEIGGSCLWWRSSG*RSGWPP
Trigger: TGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCA...CCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp GGCAGACCAGAAGTATTTTATTCGCAAGGGTCGGGAGTGGAGGTCGTAGGTGGGTCAAAATCATCCCTCTaGAGTCGGACCTCCTTAAGC +
Preference number: 4 (lower is better)
Translates to: GRPEVFYSQGSGVEVVGGSKSSL*SRTSLS
Trigger: GCTTAAGGAGGTCCGACTGCAGAGGGATGATTTTGA...CCCACCTACGACCTCCACTCCCGACCCTTGCGAATAAAATACTTCTGGTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp CTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATCCGCTCCCCAAACTTaGTCAGCAGCGTTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: LIHHYGNGMSLEIGGSCLSAPQT*SAALAG
Trigger: ACCTGCTAACGCTGCTGAGCAAGTTTGGGGAGCGGA...TAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp GAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCTGACACAGGCAACTaGAGGGCCTCTAGTTCCATA +
Preference number: 4 (lower is better)
Translates to: EVLLIHHYGNGMSLEIGGSDTGN*RASSSI
Trigger: TATGGAACTAGAGGCCCTGCAGTTGCCTGTGTCAGA...GCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp CAGACCAGAAGTATTTTATTCGCAAGGGTCGGGAGTGGAGGTCGTAGGTGGGGATCTGACACAGGCAACTaGAGGGCCTCTAGTTCCATA +
Preference number: 4 (lower is better)
Translates to: QTRSILFARVGSGGRRWGSDTGN*RASSSI
Trigger: TATGGAACTAGAGGCCCTGCAGTTGCCTGTGTCAGA...TCCCCACCTACGACCTCCACTCCCGACCCTTGCGAATAAAATACTTCTGGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp GAGGTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTGCAAGTCAAGCCCTTaGAAGTCTGACACAGGCAAC +
Preference number: 4 (lower is better)
Translates to: EVLLIHHYGNGMSLEIGGCKSSP*KSDTGN
Trigger: GTTGCCTGTGTCAGACTTGCAAGGGCTTGACTTGCA...GCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGACCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp CTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAGCTGAGCAGTGGGGACACTGGGGGCTaGAAGTCAAGCCCTTGCAAG +
Preference number: 4 (lower is better)
Translates to: LVTDGWESEKVKSDELSSGDTGG*KSSPCK
Trigger: CTTGCAAGGGCTTGACTTGCAGCCCCCAGTGTCCCC...ACTGCTCAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp CTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAGCTGAGCAGTAGAAGCATGGGAAGGTaGATCCGTGGCCCGGGGACT +
Preference number: 4 (lower is better)
Translates to: LVTDGWESEKVKSDELSSRSMGR*IRGPGT
Trigger: AGTCCCCGGGCCACGGATCCACCTTCCCATGCTTCT...ACTGCTCAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp TCAGTGAGTCAGATAACAAGATCAATAAATACCCACACTGCTTTGGGGGAGGGGAAGCCCTTGCAAGTCTaGCACAGGCAACTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: SVSQITRSINTHTALGEGKPLQV*HRQLQG
Trigger: GCCCTGCAGTTGCCTGTGTCAGACTTGCAAGGGCTT...CCCCTCCCCCAAAGCAGTGTGGGTATTTATTGATCTTGTTATCTGACTCACTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp TTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAGCTGGGGGACACTGGGGGCTaGAAGTCAAGCCCTTGCAAG +
Preference number: 4 (lower is better)
Translates to: LWLVTDGWESEKVKSDELGDTGG*KSSPCK
Trigger: CTTGCAAGGGCTTGACTTGCAGCCCCCAGTGTCCCC...CAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp GGCAGACCAGAAGTATTTTATTCGCAAGGGTCGGGAGTGGAGGTCGTAGGTGGGCAGCAGAATGTTATCTaGTTTGATGTCCCTGTGCAC +
Preference number: 4 (lower is better)
Translates to: GRPEVFYSQGSGVEVVGGQQNVI*FDVPVH
Trigger: GTGCACAGGGACATCAAACCAGATAACATTCTGCTG...CCCACCTACGACCTCCACTCCCGACCCTTGCGAATAAAATACTTCTGGTCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp TCAGTGAGTCAGATAACAAGATCAATAAATACCCACACTGCTTTGGGGGAGGGGCATATGTCTCGGCTGTaGAGTCCGCGTAGAAGGGGG +
Preference number: 4 (lower is better)
Translates to: SVSQITRSINTHTALGEGHMSRL*SPRRRG
Trigger: CCCCCTTCTACGCGGACTCCACAGCCGAGACATATG...CCCCTCCCCCAAAGCAGTGTGGGTATTTATTGATCTTGTTATCTGACTCACTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp ATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGAATTGCATGTGTCCGTaGCACCCTCGAAGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: IHHYGNGMSLEIGGSCLWNCMCP*HPRSLV
Trigger: CACCAGACTTCGAGGGTGCCACGGACACATGCAATT...CCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp TTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAGCTGGCTGCAGCGTTACCGTaGTCTCTGCCTCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: LWLVTDGWESEKVKSDELAAALP*SLPQPQ
Trigger: CTGTGGCTGAGGCAGAGACCACGGTAACGCTGCAGC...CAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp TCATGCTTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATCAAAGTGCAGCTGTGTaGTCCAGCGCCGGTCCCCTT +
Preference number: 4 (lower is better)
Translates to: SCLWLVTDGWESEKVKSDQSAAV*SSAGPL
Trigger: AAGGGGACCGGCGCTGGATCACACAGCTGCACTTTG...ATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAAGCATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp GTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCAGAATGTTATCTGGTTTaGTGTCCCTGTGCACGTAGC +
Preference number: 4 (lower is better)
Translates to: VLLIHHYGNGMSLEIGGSECYLV*CPCARS
Trigger: GCTACGTGCACAGGGACATCAAACCAGATAACATTC...TGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp TTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAGCTGCATCAGGCTGCAGTTTaGGGCAGGAGCCGAAGTCTG +
Preference number: 4 (lower is better)
Translates to: LWLVTDGWESEKVKSDELHQAAV*GRSRSL
Trigger: CAGACTTCGGCTCCTGCCTCAAACTGCAGCCTGATG...CAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp TCATGCTTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATACAGCAGCCCACGAATaGGGTCCTGAGCTTCCTCGG +
Preference number: 4 (lower is better)
Translates to: SCLWLVTDGWESEKVKSDTAAHE*GPELPR
Trigger: CCGAGGAAGCTCAGGACCTCATTCGTGGGCTGCTGT...ATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAAGCATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp CTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAGCTGAGCAGTTCCGCTCCCCAAACTTaGTCAGCAGCGTTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: LVTDGWESEKVKSDELSSSAPQT*SAALAG
Trigger: ACCTGCTAACGCTGCTGAGCAAGTTTGGGGAGCGGA...ACTGCTCAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp CTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATCAAAATCATCCCTCTaGAGTCGGACCTCCTTAAGC +
Preference number: 4 (lower is better)
Translates to: LIHHYGNGMSLEIGGSCLSKSSL*SRTSLS
Trigger: GCTTAAGGAGGTCCGACTGCAGAGGGATGATTTTGA...TAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp TTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAGCTGTGTAGCTGCCGAACATaGGCCTCCAGGTCTCGGTTT +
Preference number: 4 (lower is better)
Translates to: LWLVTDGWESEKVKSDELCSCRT*ASRSRF
Trigger: AAACCGAGACCTGGAGGCGCATGTTCGGCAGCTACA...CAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp ACCGAGGAATGTCGAGTCTCAATGCATCTAAAACGTGGGTCCCGGAGTCTGTCATTCATGGCATACACTTaGCCCGTCTGTTTCATCTTC +
Preference number: 4 (lower is better)
Translates to: TEECRVSMHLKRGSRSLSFMAYT*PVCFIF
Trigger: GAAGATGAAACAGACGGGCCAAGTGTATGCCATGAA...TGACAGACTCCGGGACCCACGTTTTAGATGCATTGAGACTCGACATTCCTCGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp GTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCACAGCAGAATGTTATCTaGTTTGATGTCCCTGTGCAC +
Preference number: 4 (lower is better)
Translates to: VLLIHHYGNGMSLEIGGSQQNVI*FDVPVH
Trigger: GTGCACAGGGACATCAAACCAGATAACATTCTGCTG...TGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp TCATGCTTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATTCCGCTCCCCAAACTTaGTCAGCAGCGTTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: SCLWLVTDGWESEKVKSDSAPQT*SAALAG
Trigger: ACCTGCTAACGCTGCTGAGCAAGTTTGGGGAGCGGA...ATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAAGCATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp ATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGAAGAAAGGATGTTTCTaGAAATCACCTGCCCCACCT +
Preference number: 4 (lower is better)
Translates to: IHHYGNGMSLEIGGSCLWKKGCF*KSPAPP
Trigger: AGGTGGGGCAGGTGATTTCCAGAAACATCCTTTCTT...CCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000154199.8
CDS-3UTR GCA 90 bp CTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAGCTGAGCAGTTCAAAATCATCCCTCTaGAGTCGGACCTCCTTAAGC +
Preference number: 4 (lower is better)
Translates to: LVTDGWESEKVKSDELSSSKSSL*SRTSLS
Trigger: GCTTAAGGAGGTCCGACTGCAGAGGGATGATTTTGA...ACTGCTCAGCTCATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CCA 90 bp GGGGGCTCATGCTTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATTCATGGCATACACTTaGCCCGTCTGTTTCATCTTC +
Preference number: 4 (lower is better)
Translates to: GGSCLWLVTDGWESEKVKFMAYT*PVCFIF
Trigger: GAAGATGAAACAGACGGGCCAAGTGTATGCCATGAA...TTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAAGCATGAGCCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR TCA 90 bp TCATGCTTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATGAATGTTATCTGGTTTaGTGTCCCTGTGCACGTAGC +
Preference number: 4 (lower is better)
Translates to: SCLWLVTDGWESEKVKSDECYLV*CPCARS
Trigger: GCTACGTGCACAGGGACATCAAACCAGATAACATTC...ATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAAGCATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS CCA 90 bp GGTTTCGGACCTCGGCCTCCTGTAGTTGGCTGGAGAAGTTCTGGTTaGCGGTCCGGATGGCCTCCAGCTCGCGGCTCAGGCTCTGCCGGG +
Preference number: 5 (lower is better)
Translates to: GFGPRPPVVGWRSSG*RSGWPPARGSGSAG
Trigger: CCCGGCAGAGCCTGAGCCGCGAGCTGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAGCCAACTACAGGAGGCCGAGGTCCGAAACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 90 bp GCGCCTCCAGGTCTCGGTTTCGGACCTCGGCCTCCTGTAGTTGGCTaGAGAAGTTCTGGTTGGCGGTCCGGATGGCCTCCAGCTCGCGGC +
Preference number: 5 (lower is better)
Translates to: APPGLGFGPRPPVVG*RSSGWRSGWPPARG
Trigger: GCCGCGAGCTGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAGCCAACTACAGGAGGCCGAGGTCCGAAACCGAGACCTGGAGGCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CAA 90 bp GCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCCTGGAGAAGTTCTGGTaGGCGGTCCGGATGGCCTCC +
Preference number: 5 (lower is better)
Translates to: AVATSSAGTRGAGHEPCSLEKFW*AVRMAS
Trigger: GGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAG...GGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS TCA 90 bp TGGCGGTCCGGATGGCCTCCAGCTCGCGGCTCAGGCTCTGCCGGGTaGGAACCTCTTCTTCCAGGGCTTCCTGGAGCTGCTGCAGCGTTA +
Preference number: 5 (lower is better)
Translates to: WRSGWPPARGSGSAG*EPLLPGLPGAAAAL
Trigger: TAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGAGCTGGAGGCCATCCGGACCGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS GCA 90 bp TTCTGGTTGGCGGTCCGGATGGCCTCCAGCTCGCGGCTCAGGCTCTaGCGGGTGAGAACCTCTTCTTCCAGGGCTTCCTGGAGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: FWLAVRMASSSRLRL*RVRTSSSRASWSCC
Trigger: GCAGCAGCTCCAGGAAGCCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGAGCTGGAGGCCATCCGGACCGCCAACCAGAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CAA 90 bp CGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTCCTCTGGAGAAGTTCTGGTaGGCGGTCCGGATGGCCTCC +
Preference number: 5 (lower is better)
Translates to: RWLPALQEPGVLGTSPVPLEKFW*AVRMAS
Trigger: GGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAG...AGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS GCA 90 bp AGGCTCTGCCGGGTGAGAACCTCTTCTTCCAGGGCTTCCTGGAGCTaGTGCAGCGTTACCGTGGTCTCTGCCTCAGCCACAGGGGCAGGG +
Preference number: 5 (lower is better)
Translates to: RLCRVRTSSSRASWS*CSVTVVSASATGAG
Trigger: CCCTGCCCCTGTGGCTGAGGCAGAGACCACGGTAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 90 bp TCTCGGTTTCGGACCTCGGCCTCCTGTAGTTGGCTGGAGAAGTTCTaGTTGGCGGTCCGGATGGCCTCCAGCTCGCGGCTCAGGCTCTGC +
Preference number: 5 (lower is better)
Translates to: SRFRTSASCSWLEKF*LAVRMASSSRLRLC
Trigger: GCAGAGCCTGAGCCGCGAGCTGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAGCCAACTACAGGAGGCCGAGGTCCGAAACCGAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS GCA 90 bp CTCTGCCGGGTGAGAACCTCTTCTTCCAGGGCTTCCTGGAGCTGCTaGAGCGTTACCGTGGTCTCTGCCTCAGCCACAGGGGCAGGGACA +
Preference number: 5 (lower is better)
Translates to: LCRVRTSSSRASWSC*SVTVVSASATGAGT
Trigger: TGTCCCTGCCCCTGTGGCTGAGGCAGAGACCACGGTAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGAAGAGGTTCTCACCCGGCAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 90 bp ACATGCGCCTCCAGGTCTCGGTTTCGGACCTCGGCCTCCTGTAGTTaGCTGGAGAAGTTCTGGTTGGCGGTCCGGATGGCCTCCAGCTCG +
Preference number: 5 (lower is better)
Translates to: TCASRSRFRTSASCS*LEKFWLAVRMASSS
Trigger: CGAGCTGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAGCCAACTACAGGAGGCCGAGGTCCGAAACCGAGACCTGGAGGCGCATGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CAA 90 bp CAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCTGTTATCCGCTCCCCAAACTaGCTCAGCAGCGTTAGCAGG +
Preference number: 5 (lower is better)
Translates to: QRWLPALQEPGVLGTSPVIRSPN*LSSVSR
Trigger: CCTGCTAACGCTGCTGAGCAAGTTTGGGGAGCGGAT...AACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS TCA 90 bp TCCACCCACTGCAAGAAGTCGGCCACATACTTGTCCTGGGCTAGGTaGGAGGCACCCAGCTCCTGGTGGACGCCCAGGAGAAGGTCGAGC +
Preference number: 5 (lower is better)
Translates to: STHCKKSATYLSWAR*EAPSSWWTPRRRSS
Trigger: GCTCGACCTTCTCCTGGGCGTCCACCAGGAGCTGGGTGCCTCTCACCTAGCCCAGGACAAGTATGTGGCCGACTTCTTGCAGTGGGTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000122999.8
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS TCA 90 bp CACGAAGGGCAGGCGCACCCCAAGGGGCATGTCTTCCTGCATGTCTaGCAGCGTCTCCATGGCAGTGAGCCGGTCCTCCACCACATCGAA +
Preference number: 5 (lower is better)
Translates to: HEGQAHPKGHVFLHV*QRLHGSEPVLHHIE
Trigger: TTCGATGTGGTGGAGGACCGGCTCACTGCCATGGAGACGCTGTCAGACATGCAGGAAGACATGCCCCTTGGGGTGCGCCTGCCCTTCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CAA 90 bp CTGAGTAAAGCAAGGTCGGCGAATGCCCAGCTGCTGCAGCAGCGGTGGCTACCACTGGAGAAGTTCTGGTaGGCGGTCCGGATGGCCTCC +
Preference number: 5 (lower is better)
Translates to: LSKARSANAQLLQQRWLPLEKFW*AVRMAS
Trigger: GGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAG...TGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CAA 90 bp GCAGCAGCGGTGGCTACCAGCTCTGCAGGAACCAGGGGTGCTGGGCACGAGCCCCTTCATGGCATACACTaGGCCCGTCTGTTTCATCTT +
Preference number: 5 (lower is better)
Translates to: AAAVATSSAGTRGAGHEPLHGIH*ARLFHL
Trigger: AAGATGAAACAGACGGGCCAAGTGTATGCCATGAAG...GGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 90 bp TGTCTGCCAGCGGCAGCGACAAGTGTTCCCTGTAGTGCACAATCTTaGCATATGTCTCGGCTGTGGAGTCCGCGTAGAAGGGGGTCTGCC +
Preference number: 5 (lower is better)
Translates to: CLPAAATSVPCSAQS*HMSRLWSPRRRGSA
Trigger: GGCAGACCCCCTTCTACGCGGACTCCACAGCCGAGACATATGCCAAGATTGTGCACTACAGGGAACACTTGTCGCTGCCGCTGGCAGACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CAA 90 bp CCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCATGCTTATGGCTCTGGAGAAGTTCTGGTaGGCGGTCCGGATGGCCTCC +
Preference number: 5 (lower is better)
Translates to: PSLWEWDVPGNRGLMLMALEKFW*AVRMAS
Trigger: GGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAG...AGCCATAAGCATGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CAA 90 bp TCAGTGAGTCAGATAACAAGATCAATAAATACCCACACTGCTTTGGGGGAGGGGCTGGAGAAGTTCTGGTaGGCGGTCCGGATGGCCTCC +
Preference number: 5 (lower is better)
Translates to: SVSQITRSINTHTALGEGLEKFW*AVRMAS
Trigger: GGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAG...CCCCTCCCCCAAAGCAGTGTGGGTATTTATTGATCTTGTTATCTGACTCACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS CCA 90 bp ACAAGTGTTCCCTGTAGTGCACAATCTTGGCATATGTCTCGGCTGTaGAGTCCGCGTAGAAGGGGGTCTGCCCATAGAACATCTCATAGG +
Preference number: 5 (lower is better)
Translates to: TSVPCSAQSWHMSRL*SPRRRGSAHRTSHR
Trigger: CCTATGAGATGTTCTATGGGCAGACCCCCTTCTACGCGGACTCCACAGCCGAGACATATGCCAAGATTGTGCACTACAGGGAACACTTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS-3UTR CAA 90 bp GGCAGACCAGAAGTATTTTATTCGCAAGGGTCGGGAGTGGAGGTCGTAGGTGGGCTTCATGGCATACACTaGGCCCGTCTGTTTCATCTT +
Preference number: 5 (lower is better)
Translates to: GRPEVFYSQGSGVEVVGGLHGIH*ARLFHL
Trigger: AAGATGAAACAGACGGGCCAAGTGTATGCCATGAAG...CCCACCTACGACCTCCACTCCCGACCCTTGCGAATAAAATACTTCTGGTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CAA 90 bp GTCTTGCTGATCCATCACTATGGGAATGGGATGTCCCTGGAAATAGGGGGCTCACTTCATGGCATACACTaGGCCCGTCTGTTTCATCTT +
Preference number: 5 (lower is better)
Translates to: VLLIHHYGNGMSLEIGGSLHGIH*ARLFHL
Trigger: AAGATGAAACAGACGGGCCAAGTGTATGCCATGAAG...TGAGCCCCCTATTTCCAGGGACATCCCATTCCCATAGTGATGGATCAGCAAGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS-3UTR CAA 90 bp TCATGCTTATGGCTTGTAACTGATGGCTGGGAGAGTGAAAAAGTGAAATCGGATTCCCTTGGGGAGGATTaGGCGAGAAGCATGGGAAGG +
Preference number: 5 (lower is better)
Translates to: SCLWLVTDGWESEKVKSDSLGED*ARSMGR
Trigger: CCTTCCCATGCTTCTCGCCAAATCCTCCCCAAGGGA...ATCCGATTTCACTTTTTCACTCTCCCAGCCATCAGTTACAAGCCATAAGCATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
CDS-3UTR CAA 90 bp TCAGTGAGTCAGATAACAAGATCAATAAATACCCACACTGCTTTGGGGGAGGGGCTTCATGGCATACACTaGGCCCGTCTGTTTCATCTT +
Preference number: 5 (lower is better)
Translates to: SVSQITRSINTHTALGEGLHGIH*ARLFHL
Trigger: AAGATGAAACAGACGGGCCAAGTGTATGCCATGAAG...CCCCTCCCCCAAAGCAGTGTGGGTATTTATTGATCTTGTTATCTGACTCACTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
CDS GCA 72 bp GCGGTCCGGATGGCCTCCAGCTCGCGGCTCAGGCTCTaGCGGGTGAGAACCTCTTCTTCCAGGGCTTCCTGG +
Preference number: 6 (lower is better)
Translates to: AVRMASSSRLRL*RVRTSSSRASW
Trigger: CCAGGAAGCCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGAGCTGGAGGCCATCCGGACCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CAA 90 bp CGGTTTCGGACCTCGGCCTCCTGTAGTTGGCTGGAGAAGTTCTGGTaGGCGGTCCGGATGGCCTCCAGCTCGCGGCTCAGGCTCTGCCGG +
Preference number: 6 (lower is better)
Translates to: RFRTSASCSWLEKFW*AVRMASSSRLRLCR
Trigger: CCGGCAGAGCCTGAGCCGCGAGCTGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAGCCAACTACAGGAGGCCGAGGTCCGAAACCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 72 bp CCTCGGCCTCCTGTAGTTGGCTGGAGAAGTTCTGGTTaGCGGTCCGGATGGCCTCCAGCTCGCGGCTCAGGC +
Preference number: 6 (lower is better)
Translates to: PRPPVVGWRSSG*RSGWPPARGSG
Trigger: GCCTGAGCCGCGAGCTGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAGCCAACTACAGGAGGCCGAGG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 72 bp CGGACCTCGGCCTCCTGTAGTTGGCTGGAGAAGTTCTaGTTGGCGGTCCGGATGGCCTCCAGCTCGCGGCTC +
Preference number: 6 (lower is better)
Translates to: RTSASCSWLEKF*LAVRMASSSRL
Trigger: GAGCCGCGAGCTGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAGCCAACTACAGGAGGCCGAGGTCCG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS TCA 72 bp GGATGGCCTCCAGCTCGCGGCTCAGGCTCTGCCGGGTaGGAACCTCTTCTTCCAGGGCTTCCTGGAGCTGCT +
Preference number: 6 (lower is better)
Translates to: GWPPARGSGSAG*EPLLPGLPGAA
Trigger: AGCAGCTCCAGGAAGCCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGAGCTGGAGGCCATCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CAA 72 bp ACCTCGGCCTCCTGTAGTTGGCTGGAGAAGTTCTGGTaGGCGGTCCGGATGGCCTCCAGCTCGCGGCTCAGG +
Preference number: 6 (lower is better)
Translates to: TSASCSWLEKFW*AVRMASSSRLR
Trigger: CCTGAGCCGCGAGCTGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAGCCAACTACAGGAGGCCGAGGT
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS TCA 72 bp CAGGCGCACCCCAAGGGGCATGTCTTCCTGCATGTCTaGCAGCGTCTCCATGGCAGTGAGCCGGTCCTCCAC +
Preference number: 6 (lower is better)
Translates to: QAHPKGHVFLHV*QRLHGSEPVLH
Trigger: GTGGAGGACCGGCTCACTGCCATGGAGACGCTGTCAGACATGCAGGAAGACATGCCCCTTGGGGTGCGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS GCA 72 bp ACGAAGGGCAGGCGCACCCCAAGGGGCATGTCTTCCTaGATGTCTGACAGCGTCTCCATGGCAGTGAGCCGG +
Preference number: 6 (lower is better)
Translates to: TKGRRTPRGMSS*MSDSVSMAVSR
Trigger: CCGGCTCACTGCCATGGAGACGCTGTCAGACATGCAGGAAGACATGCCCCTTGGGGTGCGCCTGCCCTTCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CAA 90 bp CCCCCGCTCACCATGGCAGTGAGCCGGTCCTCCACCACATCGAAATaGCATGTGTCCGTGGCACCCTCGAAGTCTGCCCCACCTCGACCT +
Preference number: 6 (lower is better)
Translates to: PPLTMAVSRSSTTSK*HVSVAPSKSAPPRP
Trigger: AGGTCGAGGTGGGGCAGACTTCGAGGGTGCCACGGACACATGCAATTTCGATGTGGTGGAGGACCGGCTCACTGCCATGGTGAGCGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108474.2
CDS CAA 90 bp AGTCGAGGCCAGAACGGGAGTATAGGGAGTTCCCTTGGGGAGGATTaGGCGAGAAGCATGGGAAGGTGGATCCGTGGCCCGGGGACTGGG +
Preference number: 6 (lower is better)
Translates to: SRGQNGSIGSSLGED*ARSMGRWIRGPGTG
Trigger: CCCAGTCCCCGGGCCACGGATCCACCTTCCCATGCTTCTCGCCAAATCCTCCCCAAGGGAACTCCCTATACTCCCGTTCTGGCCTCGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
CDS CCA 72 bp GGTCTCGGTTTCGGACCTCGGCCTCCTGTAGTTGGCTaGAGAAGTTCTGGTTGGCGGTCCGGATGGCCTCCA +
Preference number: 6 (lower is better)
Translates to: GLGFGPRPPVVG*RSSGWRSGWPP
Trigger: TGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAGCCAACTACAGGAGGCCGAGGTCCGAAACCGAGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 72 bp TCCAGGTCTCGGTTTCGGACCTCGGCCTCCTGTAGTTaGCTGGAGAAGTTCTGGTTGGCGGTCCGGATGGCC +
Preference number: 6 (lower is better)
Translates to: SRSRFRTSASCS*LEKFWLAVRMA
Trigger: GGCCATCCGGACCGCCAACCAGAACTTCTCCAGCCAACTACAGGAGGCCGAGGTCCGAAACCGAGACCTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 72 bp GCCGGTCCTCCACCACATCGAAATTGCATGTGTCCGTaGCACCCTCGAAGTCTGCCCCACCTCGACCTAGCC +
Preference number: 6 (lower is better)
Translates to: AGPPPHRNCMCP*HPRSLPHLDLA
Trigger: GGCTAGGTCGAGGTGGGGCAGACTTCGAGGGTGCCACGGACACATGCAATTTCGATGTGGTGGAGGACCGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108474.2
CDS GCA 72 bp GTGAGAACCTCTTCTTCCAGGGCTTCCTGGAGCTGCTaGAGCGTTACCGTGGTCTCTGCCTCAGCCACAGGG +
Preference number: 6 (lower is better)
Translates to: VRTSSSRASWSC*SVTVVSASATG
Trigger: CCCTGTGGCTGAGGCAGAGACCACGGTAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGAAGAGGTTCTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS GCA 72 bp CGGGTGAGAACCTCTTCTTCCAGGGCTTCCTGGAGCTaGTGCAGCGTTACCGTGGTCTCTGCCTCAGCCACA +
Preference number: 6 (lower is better)
Translates to: RVRTSSSRASWS*CSVTVVSASAT
Trigger: TGTGGCTGAGGCAGAGACCACGGTAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGAAGAGGTTCTCACCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS GCA 72 bp TGCAAGTCAAGCCCTTGCAAGTCTGACACAGGCAACTaGAGGGCCTCTAGTTCCATAGGGGTGGGGTCCGGG +
Preference number: 6 (lower is better)
Translates to: CKSSPCKSDTGN*RASSSIGVGSG
Trigger: CCCGGACCCCACCCCTATGGAACTAGAGGCCCTGCAGTTGCCTGTGTCAGACTTGCAAGGGCTTGACTTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CAA 72 bp ACCATGGCAGTGAGCCGGTCCTCCACCACATCGAAATaGCATGTGTCCGTGGCACCCTCGAAGTCTGCCCCA +
Preference number: 6 (lower is better)
Translates to: TMAVSRSSTTSK*HVSVAPSKSAP
Trigger: TGGGGCAGACTTCGAGGGTGCCACGGACACATGCAATTTCGATGTGGTGGAGGACCGGCTCACTGCCATGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108474.2
CDS CAA 72 bp CAGAACGGGAGTATAGGGAGTTCCCTTGGGGAGGATTaGGCGAGAAGCATGGGAAGGTGGATCCGTGGCCCG +
Preference number: 6 (lower is better)
Translates to: QNGSIGSSLGED*ARSMGRWIRGP
Trigger: CGGGCCACGGATCCACCTTCCCATGCTTCTCGCCAAATCCTCCCCAAGGGAACTCCCTATACTCCCGTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154199.8
CDS GCA 72 bp ATCATCCCTCTGCAGTCGGACCTCCTTAAGCCTTGCTaGAATGGGCTCCACCCACTGCAAGAAGTCGGCCAC +
Preference number: 6 (lower is better)
Translates to: IIPLQSDLLKPC*NGLHPLQEVGH
Trigger: GTGGCCGACTTCTTGCAGTGGGTGGAGCCCATTGCAGCAAGGCTTAAGGAGGTCCGACTGCAGAGGGATGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000122999.8
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS GCA 72 bp ACCTCCTTAAGCCTTGCTGCAATGGGCTCCACCCACTaGAAGAAGTCGGCCACATACTTGTCCTGGGCTAGG +
Preference number: 6 (lower is better)
Translates to: TSLSLAAMGSTH*KKSATYLSWAR
Trigger: CCTAGCCCAGGACAAGTATGTGGCCGACTTCTTGCAGTGGGTGGAGCCCATTGCAGCAAGGCTTAAGGAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000122999.8
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 72 bp GCGGCAGCGACAAGTGTTCCCTGTAGTGCACAATCTTaGCATATGTCTCGGCTGTGGAGTCCGCGTAGAAGG +
Preference number: 6 (lower is better)
Translates to: AAATSVPCSAQS*HMSRLWSPRRR
Trigger: CCTTCTACGCGGACTCCACAGCCGAGACATATGCCAAGATTGTGCACTACAGGGAACACTTGTCGCTGCCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CAA 72 bp ACCATGGCAGTGAGCCGGTCCTCCACCACATCGAAATaGCATGTGTCCGTGGCACCCTCGAAGTCTGGTGTA +
Preference number: 6 (lower is better)
Translates to: TMAVSRSSTTSK*HVSVAPSKSGV
Trigger: TACACCAGACTTCGAGGGTGCCACGGACACATGCAATTTCGATGTGGTGGAGGACCGGCTCACTGCCATGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
CDS CAA 72 bp TCCATGGCAGTGAGCCGGTCCTCCACCACATCGAAATaGCATGTGTCCGTGGCACCCTCGAAGTCTGGTGTA +
Preference number: 6 (lower is better)
Translates to: SMAVSRSSTTSK*HVSVAPSKSGV
Trigger: TACACCAGACTTCGAGGGTGCCACGGACACATGCAATTTCGATGTGGTGGAGGACCGGCTCACTGCCATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS GCA 72 bp AAAATCATCCCTCTGCAGTCGGACCTCCTTAAGCCTTaGTGCAATGGGCTCCACCCACTGCAAGAAGTCGGC +
Preference number: 6 (lower is better)
Translates to: KIIPLQSDLLKP*CNGLHPLQEVG
Trigger: GCCGACTTCTTGCAGTGGGTGGAGCCCATTGCAGCAAGGCTTAAGGAGGTCCGACTGCAGAGGGATGATTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000122999.8
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 72 bp CCCTGTAGTGCACAATCTTGGCATATGTCTCGGCTGTaGAGTCCGCGTAGAAGGGGGTCTGCCCATAGAACA +
Preference number: 6 (lower is better)
Translates to: PCSAQSWHMSRL*SPRRRGSAHRT
Trigger: TGTTCTATGGGCAGACCCCCTTCTACGCGGACTCCACAGCCGAGACATATGCCAAGATTGTGCACTACAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CCA 72 bp ATGTCCCACTTATTCATAATCTTCATGGCATACACTTaGCCCGTCTGTTTCATCTTCACCACCGCTACCTCG +
Preference number: 6 (lower is better)
Translates to: MSHLFIIFMAYT*PVCFIFTTATS
Trigger: CGAGGTAGCGGTGGTGAAGATGAAACAGACGGGCCAAGTGTATGCCATGAAGATTATGAATAAGTGGGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2
CDS CAA 72 bp CATGTCCCACTTATTCATAATCTTCATGGCATACACTaGGCCCGTCTGTTTCATCTTCACCACCGCTACCTC +
Preference number: 6 (lower is better)
Translates to: HVPLIHNLHGIH*ARLFHLHHRYL
Trigger: GAGGTAGCGGTGGTGAAGATGAAACAGACGGGCCAAGTGTATGCCATGAAGATTATGAATAAGTGGGACATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032568.14
ENSMUST00000108473.10
ENSMUST00000108474.2
ENSMUST00000154199.8
ENSMUST00000238982.2