RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DMBT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047517

Ensembl transcript IDs: ENSMUST00000084509.7, ENSMUST00000208311.4, ENSMUST00000209015.3, ENSMUST00000213064.3

Found 525 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGCCACAGCCAGGACCATGGCCAGGAAGACTCCGCCAAAGATGGCTaGAGTAGGGTAGACGGCCTGGGAGCTTGCTGGCTTCTTCACATC +
Preference number: 1 (lower is better)
Translates to: CHSQDHGQEDSAKDG*SRVDGLGACWLLHI
Trigger: GATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTACCCTACTGCAGCCATCTTTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR GCA 90 bp GACTCCGCCAAAGATGGCTGCAGTAGGGTAGACGGCCTGGGAGCTTaGTGGCTTCTTCACATCCTCCACTGCCAAGTCCCCGTTGTCTTC +
Preference number: 1 (lower is better)
Translates to: DSAKDGCSRVDGLGA*WLLHILHCQVPVVF
Trigger: GAAGACAACGGGGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTACCCTACTGCAGCCATCTTTGGCGGAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR GCA 90 bp AGGTTGGCCACGGTCAATGTGTGTCCTCCTTCCCAATGTGAAGGCTaGCACAGCCAGGACCATGGCCAGGAAGACTCCGCCAAAGATGGC +
Preference number: 1 (lower is better)
Translates to: RLATVNVCPPSQCEG*HSQDHGQEDSAKDG
Trigger: GCCATCTTTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGGCAGCCTTCACATTGGGAAGGAGGACACACATTGACCGTGGCCAACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR CCA 90 bp GCCAATGTCTGGGTTGTTTCACTTCACAACTTAGTACTTGGAGGTTaGCCACGGTCAATGTGTGTCCTCCTTCCCAATGTGAAGGCTGCC +
Preference number: 1 (lower is better)
Translates to: ANVWVVSLHNLVLGG*PRSMCVLLPNVKAA
Trigger: GGCAGCCTTCACATTGGGAAGGAGGACACACATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGAAGTGAAACAACCCAGACATTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR CCA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTaGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTTC +
Preference number: 1 (lower is better)
Translates to: VSGCQASGSHVFHLF*ESVLVEPMSGLFHF
Trigger: GAAGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR GCA 90 bp GCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTaGTTGTGGAGCCAATGTCTGGGTTGTTTCACTTCACAACTTAGT +
Preference number: 1 (lower is better)
Translates to: AKRQALMSSIFSGNL*LWSQCLGCFTSQLS
Trigger: ACTAAGTTGTGAAGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR CCA 90 bp TGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTaGGTTGTTTCACTTCACAACTTAGTACTTGGAGGTTGGCCACGG +
Preference number: 1 (lower is better)
Translates to: CLPSFLGICACGANV*VVSLHNLVLGGWPR
Trigger: CCGTGGCCAACCTCCAAGTACTAAGTTGTGAAGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR CCA 90 bp CGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTaGAGCCAATGTCTGGGTTGTTTCACTTCACAACTTAGTACTTGG +
Preference number: 1 (lower is better)
Translates to: RQALMSSIFSGNLCL*SQCLGCFTSQLSTW
Trigger: CCAAGTACTAAGTTGTGAAGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR CCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGCCACAGCCAGGACCATaGCCAGGAAGACTCCGCCAA +
Preference number: 2 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQPQPGP*PGRLRQ
Trigger: TTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGG...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR CCA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCGGCCTGGGAGCTTGCTaGCTTCTTCACATCCTCCAC +
Preference number: 2 (lower is better)
Translates to: SWLYMGKRESLARESMAAGLGAC*LLHILH
Trigger: GTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCC...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR GCA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCGAGAGAAAGCATGGCTaGCACCAGTGCTCAGCTCAC +
Preference number: 2 (lower is better)
Translates to: SWLYMGKRESLARESMAAERKHG*HQCSAH
Trigger: GTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTC...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR GCA 90 bp ACCAGTGCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTCTTCACATCCTCCACTaGCAAGTCCCCGTTGTCTTC +
Preference number: 2 (lower is better)
Translates to: TSAQLTVACDCRHWSHSPLHILH*QVPVVF
Trigger: GAAGACAACGGGGACTTGGCAGTGGAGGATGTGAAG...AGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR CCA 90 bp CATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGATCCTGGGAAAACTTaGCCCCCACCTTTCTTCTTT +
Preference number: 2 (lower is better)
Translates to: HGEKGKSSERKHGCHQCSDPGKT*PPPFFF
Trigger: AAAGAAGAAAGGTGGGGGCCAAGTTTTCCCAGGATC...TGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR CAA 90 bp AGCCAATGTCTGGGTTGTTTCACTTCACAACTTAGTACTTGGAGGTaGGCCACGGTCAATGTGTGTCCTCCTTCCCAATGTGAAGGCTGC +
Preference number: 2 (lower is better)
Translates to: SQCLGCFTSQLSTWR*ATVNVCPPSQCEGC
Trigger: GCAGCCTTCACATTGGGAAGGAGGACACACATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGAAGTGAAACAACCCAGACATTGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR GCA 90 bp TTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAACTTGGGACGGCCTGGGAGCTTaGTGGCTTCTTCACATCCTC +
Preference number: 2 (lower is better)
Translates to: FSYDILPSLQSVDPGKTWDGLGA*WLLHIL
Trigger: GAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTC...CCAAGTTTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR CCA 90 bp CTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGTCAGTCTGTAGATCCTaGGAAAACTTGGCCCCCACC +
Preference number: 2 (lower is better)
Translates to: LSCLPSFLGICACGANVWSVCRS*ENLAPT
Trigger: GGTGGGGGCCAAGTTTTCCCAGGATCTACAGACTGA...CCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAGTCTTCCATCTTTTCTaGGAATCTGTGCTTGTGGAG +
Preference number: 2 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGVFHLF*ESVLVE
Trigger: CTCCACAAGCACAGATTCCCAGAAAAGATGGAAGAC...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR GCA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGCATGGCTGCCACCAGTaGTCAGCTCACAGTTGCCTG +
Preference number: 2 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWHGCHQ*SAHSCL
Trigger: CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATG...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR GCA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATCATGGCTGCCACCAGTaGTCAGCTCACAGTTGCCTG +
Preference number: 2 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYHGCHQ*SAHSCL
Trigger: CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATG...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CCA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACAGTCTTCCATCTTTTCTaGGAATCTGTGCTTGTGGAG +
Preference number: 2 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTVFHLF*ESVLVE
Trigger: CTCCACAAGCACAGATTCCCAGAAAAGATGGAAGAC...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR CAA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTaGTGGAGCCAATGTCTGGGTTGTTTCACTTCACAACTTAGTACT +
Preference number: 2 (lower is better)
Translates to: KRQALMSSIFSGNLC*WSQCLGCFTSQLST
Trigger: AGTACTAAGTTGTGAAGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR CCA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGTCTTCCATCTTTTCTaGGAATCTGTGCTTGTGGAG +
Preference number: 2 (lower is better)
Translates to: ESWLYMGKRESLARESMAVFHLF*ESVLVE
Trigger: CTCCACAAGCACAGATTCCCAGAAAAGATGGAAGAC...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CCA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGTCAGTCTGTAGATCCTaGGAAAACTTGGCCCCCACC +
Preference number: 2 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWSVCRS*ENLAPT
Trigger: GGTGGGGGCCAAGTTTTCCCAGGATCTACAGACTGA...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CCA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGGATCCTGGGAAAACTTaGCCCCCACCTTTCTTCTTT +
Preference number: 2 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWDPGKT*PPPFFF
Trigger: AAAGAAGAAAGGTGGGGGCCAAGTTTTCCCAGGATC...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CCA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGGTCTTCCATCTTTTCTaGGAATCTGTGCTTGTGGAG +
Preference number: 2 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWVFHLF*ESVLVE
Trigger: CTCCACAAGCACAGATTCCCAGAAAAGATGGAAGAC...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CCA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGCCATCTCATTGTTCTTaGCTAAGCATTTGTGCTAAG +
Preference number: 2 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWPSHCS*LSICAK
Trigger: CTTAGCACAAATGCTTAGCCAAGAACAATGAGATGG...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR GCA 72 bp ACGGTCAATGTGTGTCCTCCTTCCCAATGTGAAGGCTaGCACAGCCAGGACCATGGCCAGGAAGACTCCGCC +
Preference number: 3 (lower is better)
Translates to: TVNVCPPSQCEG*HSQDHGQEDSA
Trigger: GGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGGCAGCCTTCACATTGGGAAGGAGGACACACATTGACCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR CCA 72 bp GATGGCTGCAGTAGGGTAGACGGCCTGGGAGCTTGCTaGCTTCTTCACATCCTCCACTGCCAAGTCCCCGTT +
Preference number: 3 (lower is better)
Translates to: DGCSRVDGLGAC*LLHILHCQVPV
Trigger: AACGGGGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTACCCTACTGCAGCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR GCA 72 bp AAAGATGGCTGCAGTAGGGTAGACGGCCTGGGAGCTTaGTGGCTTCTTCACATCCTCCACTGCCAAGTCCCC +
Preference number: 3 (lower is better)
Translates to: KDGCSRVDGLGA*WLLHILHCQVP
Trigger: GGGGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTACCCTACTGCAGCCATCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR GCA 72 bp GGCCTGGGAGCTTGCTGGCTTCTTCACATCCTCCACTaGCAAGTCCCCGTTGTCTTCCCAACCAAGAGAGTT +
Preference number: 3 (lower is better)
Translates to: GLGACWLLHILH*QVPVVFPTKRV
Trigger: AACTCTCTTGGTTGGGAAGACAACGGGGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR CAA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTCTGGGAATCTGTGCTaGTGGAGCCAATGTCTGGGT +
Preference number: 3 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSSGNLC*WSQCLG
Trigger: ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGA...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CAA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGAGATCCTGGGAAAACTaGGCCCCCACCTTTCTTCTT +
Preference number: 3 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQRSWEN*APTFLL
Trigger: AAGAAGAAAGGTGGGGGCCAAGTTTTCCCAGGATCT...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CAA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAAGACGGCCTGGGAGCTaGCTGGCTTCTTCACATCCT +
Preference number: 3 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKRRPGS*LASSHP
Trigger: AGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCT...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR CAA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGTTCTTTGCCATCTCATaGTTCTTGGCTAAGCATTTG +
Preference number: 3 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLFFAIS*FLAKHL
Trigger: CAAATGCTTAGCCAAGAACAATGAGATGGCAAAGAA...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR CCA 72 bp TGGGTTGTTTCACTTCACAACTTAGTACTTGGAGGTTaGCCACGGTCAATGTGTGTCCTCCTTCCCAATGTG +
Preference number: 3 (lower is better)
Translates to: WVVSLHNLVLGG*PRSMCVLLPNV
Trigger: CACATTGGGAAGGAGGACACACATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGAAGTGAAACAACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR CCA 72 bp CAATGTCTGGGTTGTTTCACTTCACAACTTAGTACTTaGAGGTTGGCCACGGTCAATGTGTGTCCTCCTTCC +
Preference number: 3 (lower is better)
Translates to: QCLGCFTSQLST*RLATVNVCPPS
Trigger: GGAAGGAGGACACACATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGAAGTGAAACAACCCAGACATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR CAA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCAGATCCTGGGAAAACTaGGCCCCCACCTTTCTTCTT +
Preference number: 3 (lower is better)
Translates to: DGESWLYMGKRESLARESRSWEN*APTFLL
Trigger: AAGAAGAAAGGTGGGGGCCAAGTTTTCCCAGGATCT...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CAA 90 bp AGATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGAGATCCTGGGAAAACTaGGCCCCCACCTTTCTTCTT +
Preference number: 3 (lower is better)
Translates to: RWRKLAIHGEKGKSSERKRSWEN*APTFLL
Trigger: AAGAAGAAAGGTGGGGGCCAAGTTTTCCCAGGATCT...CTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CAA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCTTCTTTGCCATCTCATaGTTCTTGGCTAAGCATTTG +
Preference number: 3 (lower is better)
Translates to: SWLYMGKRESLARESMAAFFAIS*FLAKHL
Trigger: CAAATGCTTAGCCAAGAACAATGAGATGGCAAAGAA...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CAA 90 bp TTGCAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCAGATCCTGGGAAAACTaGGCCCCCACCTTTCTTCTT +
Preference number: 3 (lower is better)
Translates to: LQYCKKKLTSTLQMEKVGRSWEN*APTFLL
Trigger: AAGAAGAAAGGTGGGGGCCAAGTTTTCCCAGGATCT...GCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR CCA 72 bp TCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTaGGTTGTTTCACTTCACAACTTAGTACTTGGAGGT +
Preference number: 3 (lower is better)
Translates to: SFLGICACGANV*VVSLHNLVLGG
Trigger: ACCTCCAAGTACTAAGTTGTGAAGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
3UTR-3UTR CAA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTTTCTTTGCCATCTCATaGTTCTTGGCTAAGCATTTG +
Preference number: 3 (lower is better)
Translates to: ESWLYMGKRESLARESMAFFAIS*FLAKHL
Trigger: CAAATGCTTAGCCAAGAACAATGAGATGGCAAAGAA...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR-3UTR CAA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATTTCTTTGCCATCTCATaGTTCTTGGCTAAGCATTTG +
Preference number: 3 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYFFAIS*FLAKHL
Trigger: CAAATGCTTAGCCAAGAACAATGAGATGGCAAAGAA...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GCCACAGCCAGGACCATGGCCAGGAAGACTCCGCCAAAGATGGCTGCAGTAGGGGGCTCCTCTTTTCTTTaGTGGGGGATTGCAACTGGA +
Preference number: 4 (lower is better)
Translates to: ATARTMARKTPPKMAAVGGSSFL*WGIATG
Trigger: TCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCC...CCCTACTGCAGCCATCTTTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR CCA 90 bp GCCACAGCCAGGACCATGGCCAGGAAGACTCCGCCAAAGATGGCTGCAGTAGGGCGTAGTATGGGCTGCTaGTCACTGGAAACAAGAAGG +
Preference number: 4 (lower is better)
Translates to: ATARTMARKTPPKMAAVGRSMGC*SLETRR
Trigger: CCTTCTTGTTTCCAGTGACCAGCAGCCCATACTACG...CCCTACTGCAGCCATCTTTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR CCA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGCCACAGCCAGGACCATaGCCAGGAAGACTCCGCCAA +
Preference number: 4 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLPQPGP*PGRLRQ
Trigger: TTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGG...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCATGACAATGGGCCCTaGGCCCTGTCCAAACCTGGC +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQHDNGP*ALSKPG
Trigger: GCCAGGTTTGGACAGGGCTCAGGGCCCATTGTCATG...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCTCCACCCGGCCCTaGCAGCGGTCACTGCCATTC +
Preference number: 4 (lower is better)
Translates to: SWLYMGKRESLARESMAATSTRP*QRSLPF
Trigger: GAATGGCAGTGACCGCTGTCAGGGCCGGGTGGAGGT...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GTAGACGGCCTGGGAGCTTGCTGGCTTCTTCACATCCTCCACTGCCAAGTCCCCAATTGCCCAGAGGGTTaGGTCAGGAAACCTCCACAA +
Preference number: 4 (lower is better)
Translates to: VDGLGACWLLHILHCQVPNCPEG*VRKPPQ
Trigger: TTGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATT...GGGGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR CCA 90 bp GCCACAGCCAGGACCATGGCCAGGAAGACTCCGCCAAAGATGGCTGCAGTAGGGATGAGAGGTGAACTGTaGTGGGGGCCATCAAAAATC +
Preference number: 4 (lower is better)
Translates to: ATARTMARKTPPKMAAVGMRGEL*WGPSKI
Trigger: GATTTTTGATGGCCCCCACCACAGTTCACCTCTCAT...CCCTACTGCAGCCATCTTTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR TCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGTCCTCCTTCCCAATGTaGAGGCTGCCACAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQSSFPM*RLPQPG
Trigger: TCCTGGCTGTGGCAGCCTTCACATTGGGAAGGAGGA...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGTCCCAATGTGAAGGCTaGCACAGCCAGGACCATGGC +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQSQCEG*HSQDHG
Trigger: GCCATGGTCCTGGCTGTGGCAGCCTTCACATTGGGA...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTAAAGTAGGCATTTCCTaGGGCAGACACGGCCCAGCC +
Preference number: 4 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSKVGIS*GRHGPA
Trigger: GGCTGGGCCGTGTCTGCCCCAGGAAATGCCTACTTT...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAAACCTGGCACTTCCTaGGGCAGACACGGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: SVRLSCLPSFLGICACGAKPGTS*GRHGQA
Trigger: GGCTTGGCCGTGTCTGCCCCAGGAAGTGCCAGGTTT...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR TCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGATCTCCACTCGACCCTaGCACCTGTCTCCTCCGTTC +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQISTRP*HLSPPF
Trigger: GAACGGAGGAGACAGGTGTCAGGGTCGAGTGGAGAT...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ACCAGTGCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTAGGCCACGTCATCCATaGCAATGGGCCCTGTGCCCT +
Preference number: 4 (lower is better)
Translates to: TSAQLTVACDCRHWSHSPRPRHP*QWALCP
Trigger: AGGGCACAGGGCCCATTGTCATGGATGACGTGGCCT...AGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR TCA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCAGGCCACGTCATCCATaGCAATGGGCCCTGTGCCCT +
Preference number: 4 (lower is better)
Translates to: SWLYMGKRESLARESMAARPRHP*QWALCP
Trigger: AGGGCACAGGGCCCATTGTCATGGATGACGTGGCCT...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR TCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCAAGCTGCACATCTGTaGAGACCACTGTCACGCGGT +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQQAAHL*RPLSRG
Trigger: ACCGCGTGACAGTGGTCTTCACAGATGTGCAGCTTG...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGCCACAGCCGAGCTGTTaGCAGACGACATCTGCATCC +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQPQPSC*QTTSAS
Trigger: GGATGCAGATGTCGTCTGTCAACAGCTCGGCTGTGG...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGTATGGGCTGGAAAATTaGCCAGAGGGTTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLYGLEN*PEGWVR
Trigger: CCTGACCCAACCCTCTGGGCAATTTTCCAGCCCATA...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGCAGCCTCCTTCAAGCTaGACATCTGTGAAGGCCACT +
Preference number: 4 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLQPPSS*TSVKAT
Trigger: AGTGGCCTTCACAGATGTGCAGCTTGAAGGAGGCTG...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GAGCTTGCTGGCTTCTTCACATCCTCCACTGCCAAGTCCCCGTTGTCTTCCCAATTGACCCAGGTGTTCTaGAGCATCTTGCAGCTGACG +
Preference number: 4 (lower is better)
Translates to: ELAGFFTSSTAKSPLSSQLTQVF*SILQLT
Trigger: CGTCAGCTGCAAGATGCTGCAGAACACCTGGGTCAA...TTGGGAAGACAACGGGGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR CCA 90 bp TACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTAAAGTAGGCATTTCCTaGGGCAGACACGGCCCAGCC +
Preference number: 4 (lower is better)
Translates to: YMGKRESLARESMAATSAKVGIS*GRHGPA
Trigger: GGCTGGGCCGTGTCTGCCCCAGGAAATGCCTACTTT...AGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCTGCCCTGTCCAAACCTaGCACTTCCTGGGGCAGACA +
Preference number: 4 (lower is better)
Translates to: SVRLSCLPSFLGICACGACPVQT*HFLGQT
Trigger: TGTCTGCCCCAGGAAGTGCCAGGTTTGGACAGGGCA...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR CCA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGAATTGTCCAGAGGGTTaGGTCAGGAGACCTCCACAG +
Preference number: 4 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLNCPEG*VRRPPQ
Trigger: CTGTGGAGGTCTCCTGACCCAACCCTCTGGACAATT...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCGGCCTGGGAGCTTGCTaGCTTCTTCACATCCTCCAC +
Preference number: 4 (lower is better)
Translates to: SVRLSCLPSFLGICACGAGLGAC*LLHILH
Trigger: GTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCC...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGCGTCATGTTGACAGCTaGACAGGTAGGACTCCCATC +
Preference number: 4 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLRHVDS*TGRTPI
Trigger: GATGGGAGTCCTACCTGTCCAGCTGTCAACATGACG...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGATCTCCACTCGACCCTaGCACCTGTCTCCTCCGTTC +
Preference number: 4 (lower is better)
Translates to: CQASGSHVFHLFWESVLVISTRP*HLSPPF
Trigger: GAACGGAGGAGACAGGTGTCAGGGTCGAGTGGAGAT...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGCAAGCTGCACATCTGTaGAGACCACTGTCACGCGGT +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQQAAHL*RPLSRG
Trigger: ACCGCGTGACAGTGGTCTTCACAGATGTGCAGCTTG...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCGCCCTCACACCGGTTTaGTCCATTTACCAGCCTCAG +
Preference number: 4 (lower is better)
Translates to: SVRLSCLPSFLGICACGAALTPV*SIYQPQ
Trigger: CTGAGGCTGGTAAATGGATCAAACCGGTGTGAGGGC...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCACCAGCTGCAAATCTCTaGAGACCACAGTCACACGGT +
Preference number: 4 (lower is better)
Translates to: HGEKGKSSERKHGCHQCSPAANL*RPQSHG
Trigger: ACCGTGTGACTGTGGTCTTCAGAGATTTGCAGCTGG...TGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCTCCTCCTTCCCAATGTaGAGGCTGCCACAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: SWLYMGKRESLARESMAASSFPM*RLPQPG
Trigger: TCCTGGCTGTGGCAGCCTTCACATTGGGAAGGAGGA...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTGATCTGGCCTGGTTGTaGTCTGGATTTGGGCATCTG +
Preference number: 4 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSDLAWL*SGFGHL
Trigger: CAGATGCCCAAATCCAGAGCACAACCAGGCCAGATC...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCGACGGCCTGGGAGCTTaGTGGCTTCTTCACATCCTC +
Preference number: 4 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSDGLGA*WLLHIL
Trigger: GAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTC...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ACCAGTGCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTGACGGCCTGGGAGCTTaGTGGCTTCTTCACATCCTC +
Preference number: 4 (lower is better)
Translates to: TSAQLTVACDCRHWSHSPDGLGA*WLLHIL
Trigger: GAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTC...AGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGGGTTGGGATTGGCACTaGAGGAGTTGTGCTGACTGT +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQGWDWH*RSCADC
Trigger: ACAGTCAGCACAACTCCTCCAGTGCCAATCCCAACC...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCCACAGCCAGGACCATaGCCAGGAAGACTCCGCCAA +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNPQPGP*PGRLRQ
Trigger: TTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGG...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGCCACAGCCAGGACCATaGCCAGGAAGACTCCGCCAA +
Preference number: 4 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGPQPGP*PGRLRQ
Trigger: TTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGG...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATATCTCCACTCGACCCTaGCACCTGTCTCCTCCGTTC +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNISTRP*HLSPPF
Trigger: GAACGGAGGAGACAGGTGTCAGGGTCGAGTGGAGAT...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGGAGAAGCTGAACAGATaGCTCCAGCATCTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQEKLNR*LQHLPG
Trigger: ACCAGGAAGATGCTGGAGTCATCTGTTCAGCTTCTC...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTGAGAAGCTGAACAGATaGCTCCAGCATCTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSEKLNR*LQHLPG
Trigger: ACCAGGAAGATGCTGGAGTCATCTGTTCAGCTTCTC...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTATCTCCACACGACCCTaGCACCTGTCTCCTCCATTC +
Preference number: 4 (lower is better)
Translates to: VSGCQASGSHVFHLFWESISTRP*HLSPPF
Trigger: GAATGGAGGAGACAGGTGTCAGGGTCGTGTGGAGAT...AGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR TCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTGGATTTGGGCATCTaGACAGATGACTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQLDLGI*TDDSSI
Trigger: GATGCTGGAGTCATCTGTTCAGATGCCCAAATCCAG...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGCAAGCTGCACATCTGTaGAGACCACTGTCACGCGGT +
Preference number: 4 (lower is better)
Translates to: CQASGSHVFHLFWESVLVQAAHL*RPLSRG
Trigger: ACCGCGTGACAGTGGTCTTCACAGATGTGCAGCTTG...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGACAAGCTGCACATCTGTaGAGACCACTGTCACACGGT +
Preference number: 4 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGQAAHL*RPLSHG
Trigger: ACCGTGTGACAGTGGTCTTCACAGATGTGCAGCTTG...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCCAAGCTGCACATCTGTaGAGACCACTGTCACACGGT +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCQAAHL*RPLSHG
Trigger: ACCGTGTGACAGTGGTCTTCACAGATGTGCAGCTTG...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGCCAGCTGCAAATCTCTaGAGACCACAGTCACACGGT +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQPAANL*RPQSHG
Trigger: ACCGTGTGACTGTGGTCTTCAGAGATTTGCAGCTGG...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCCAGCTGCAAATCTCTaGAGACCACAGTCACACGGT +
Preference number: 4 (lower is better)
Translates to: YMGKRESLARESMAATSAPAANL*RPQSHG
Trigger: ACCGTGTGACTGTGGTCTTCAGAGATTTGCAGCTGG...AGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGACACTGCAGGTACACTaGGGGGAAGCGGTTCAGGAA +
Preference number: 4 (lower is better)
Translates to: CQASGSHVFHLFWESVLVTLQVH*GEAVQE
Trigger: TTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGT...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGACAAGAGAATGTTCCCTaGGCCCTCTCCAAAATGGGC +
Preference number: 4 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGQENVP*ALSKMG
Trigger: GCCCATTTTGGAGAGGGCTCAGGGAACATTCTCTTG...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTGTCGTCACACACAGTaGCCCAGGAACCCTGGTAAA +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCCRHTQ*PRNPGK
Trigger: TTTACCAGGGTTCCTGGGGCACTGTGTGTGACGACA...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGTCAGGAACGGTTGTCTaGTCTGCTGTGGTTTGGTCA +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQSGTVV*SAVVWS
Trigger: TGACCAAACCACAGCAGAGCAGACAACCGTTCCTGA...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGTCGTCACACACAGTaGCCCAGGATCCCTGGTAAA +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQCRHTQ*PRIPGK
Trigger: TTTACCAGGGATCCTGGGGCACTGTGTGTGACGACA...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGACCAAGCATTTCCTGGTaGAGACAGAGCAGAGCCACA +
Preference number: 4 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGPSISW*RQSRAT
Trigger: TGTGGCTCTGCTCTGTCTGCACCAGGAAATGCTTGG...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCCCAAGCATTTCCTGGTaGAGACAGAGCAGAGCCACA +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCPSISW*RQSRAT
Trigger: TGTGGCTCTGCTCTGTCTGCACCAGGAAATGCTTGG...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCATGCACAGATGACTCCTaGATCCTCAGAATGGCGACA +
Preference number: 4 (lower is better)
Translates to: HGEKGKSSERKHGCHQCSCTDDS*ILRMAT
Trigger: TGTCGCCATTCTGAGGATGCAGGAGTCATCTGTGCA...TGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCAGTCACCTCAGGGAGTaGACAGATGACTCCTGCATC +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCSHLRE*TDDSCI
Trigger: GATGCAGGAGTCATCTGTGCACTCCCTGAGGTGACT...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGAATGGGCTAGAAAATTaGCCAGAGGGTTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQNGLEN*PEGWVR
Trigger: CCTGACCCAACCCTCTGGGCAATTTTCTAGCCCATT...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGACTGAAGGTAGCTCCTaGTCACGCTGGCTTGCATGT +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQTEGSS*SRWLAC
Trigger: ACATGCAAGCCAGCGTGAGCAGGAGCTACCTTCAGT...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCACTGAAGGTAGCTCCTaGTCACGCTGGCTTGCATGT +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCTEGSS*SRWLAC
Trigger: ACATGCAAGCCAGCGTGAGCAGGAGCTACCTTCAGT...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAACTGAAGGTAGCTCCTaGTCACGCTGGCTTGCATGT +
Preference number: 4 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGTEGSS*SRWLAC
Trigger: ACATGCAAGCCAGCGTGAGCAGGAGCTACCTTCAGT...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGATTGACCCAGGTGTTCTaGAGCATCTTGCAGCTGACG +
Preference number: 4 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGLTQVF*SILQLT
Trigger: CGTCAGCTGCAAGATGCTGCAGAACACCTGGGTCAA...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGACTACCAGTTTACACTaGAGGTACACTGAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLTTSLH*RYTEGK
Trigger: CTTCCCCTCAGTGTACCTGCAGTGTAAACTGGTAGT...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGGTTATTTGTCCCTCCTaGATTCCACCAGCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQVICPS*IPPARC
Trigger: ACACCTGGCTGGTGGAATCCAGGAGGGACAAATAAC...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTAAACCTGGCACTTCCTaGGGCAGACACGGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: ESWLYMGKRESLARESMAKPGTS*GRHGQA
Trigger: GGCTTGGCCGTGTCTGCCCCAGGAAGTGCCAGGTTT...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR CCA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCGGCCTGGTTGTGCTCTaGATTTGGGCATCTGAACAG +
Preference number: 4 (lower is better)
Translates to: SVRLSCLPSFLGICACGAGLVVL*IWASEQ
Trigger: CTGTTCAGATGCCCAAATCCAGAGCACAACCAGGCC...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGAATTGTCCAGAGGGTTaGGTCAGGAGACCTCCACAG +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQNCPEG*VRRPPQ
Trigger: CTGTGGAGGTCTCCTGACCCAACCCTCTGGACAATT...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAGGTTGGGATTGGCACTaGAGGAGTTGTGCTGACTGT +
Preference number: 4 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGGWDWH*RSCADC
Trigger: ACAGTCAGCACAACTCCTCCAGTGCCAATCCCAACC...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGGAACCAAGCATTTCCTaGTGCAGACAGAGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQEPSIS*CRQSRA
Trigger: GGCTCTGCTCTGTCTGCACCAGGAAATGCTTGGTTC...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCGTAGTATGGGCTGCTaGTCACTGGAAACAAGAAGG +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQRSMGC*SLETRR
Trigger: CCTTCTTGTTTCCAGTGACCAGCAGCCCATACTACG...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGCCGGCGTCTTCCCTGTaGCCACAGTCATGGTTGTAC +
Preference number: 4 (lower is better)
Translates to: LSCLPSFLGICACGANVWPASSL*PQSWLY
Trigger: GTACAACCATGACTGTGGCCACAGGGAAGACGCCGG...CCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGCCATCTCATTGTTCTTGGCTAAGCATTTGTGCTAAGGGAATCCTAGTCACCCATGACAATGGGCCCTaGGCCCTGTCCAAACCTGGC +
Preference number: 4 (lower is better)
Translates to: LPSHCSWLSICAKGILVTHDNGP*ALSKPG
Trigger: GCCAGGTTTGGACAGGGCTCAGGGCCCATTGTCATG...GGTGACTAGGATTCCCTTAGCACAAATGCTTAGCCAAGAACAATGAGATGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTGTGGGACTGCTTGATTaGGAAGCTGAACAGATGACT +
Preference number: 4 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSVGLLD*EAEQMT
Trigger: AGTCATCTGTTCAGCTTCTCAATCAAGCAGTCCCAC...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATATCTCCACACGACCCTaGCACCTGTCTCCTCCATTC +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNISTRP*HLSPPF
Trigger: GAATGGAGGAGACAGGTGTCAGGGTCGTGTGGAGAT...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR TCA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCGGGCATCTGAACAGATaGCTCCAGCATCCTCATGGT +
Preference number: 4 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSGHLNR*LQHPHG
Trigger: ACCATGAGGATGCTGGAGTCATCTGTTCAGATGCCC...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCCACACACCCGAGCAATaGGAGACGAATTGTACTGAG +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCHTPEQ*ETNCTE
Trigger: CTCAGTACAATTCGTCTCTCATTGCTCGGGTGTGTG...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTGCCCTCACACCGGTTTaGTCCATTTACCAGCCTCAG +
Preference number: 4 (lower is better)
Translates to: LMSSIFSGNLCLWSQCLGALTPV*SIYQPQ
Trigger: CTGAGGCTGGTAAATGGATCAAACCGGTGTGAGGGC...ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCGCAGCATCTTGCAGCTaGCGTGGATATTCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSAASCS*RGYSGP
Trigger: AGGACCTGAATATCCACGTCAGCTGCAAGATGCTGC...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CTGGCTTCTTCACATCCTCCACTGCCAAGTCCCCGTTGTCTTCCCAACCAAGAGTCGAAATTGCCATACTaGACTTCCTGGATCTCCACT +
Preference number: 4 (lower is better)
Translates to: LASSHPPLPSPRCLPNQESKLPY*TSWIST
Trigger: AGTGGAGATCCAGGAAGTTCAGTATGGCAATTTCGA...CTCTTGGTTGGGAAGACAACGGGGACTTGGCAGTGGAGGATGTGAAGAAGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR TCA 90 bp GTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTCCTCCTTCCCAATGTaGAGGCTGCCACAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: VACDCRHWSHSPMTFFLASSFPM*RLPQPG
Trigger: TCCTGGCTGTGGCAGCCTTCACATTGGGAAGGAGGA...GGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGGGCCCCTCCTGGTGCTaGCACAGAATGGCCACAGCC +
Preference number: 4 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWGPSWC*HRMATA
Trigger: GGCTGTGGCCATTCTGTGTCAGCACCAGGAGGGGCC...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAAACCAGGTGTGGGACTaGTTGATTGAGAAGCTGAAC +
Preference number: 4 (lower is better)
Translates to: HGEKGKSSERKHGCHQCSNQVWD*LIEKLN
Trigger: GTTCAGCTTCTCAATCAAGCAGTCCCACACCTGGTT...TGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTGTCGTCACATACAGTaGCCCAGGAACCCTGGTAAA +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCCRHIQ*PRNPGK
Trigger: TTTACCAGGGTTCCTGGGGCACTGTATGTGACGACA...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCTGTCGTCACATACAGTaGCCCAGGAACCCTGGTAAA +
Preference number: 4 (lower is better)
Translates to: SVRLSCLPSFLGICACGACRHIQ*PRNPGK
Trigger: TTTACCAGGGTTCCTGGGGCACTGTATGTGACGACA...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGATCAGGAACGGTTGTCTaGTCTGCTGTGGTTTGGTCA +
Preference number: 4 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGSGTVV*SAVVWS
Trigger: TGACCAAACCACAGCAGAGCAGACAACCGTTCCTGA...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACTGTCGTCACACACAGTaGCCCAGGATCCCTGGTAAA +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHCRHTQ*PRIPGK
Trigger: TTTACCAGGGATCCTGGGGCACTGTGTGTGACGACA...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGTATGGGCTGGAAAATTaGCCAGAGGGTTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: CQASGSHVFHLFWESVLVYGLEN*PEGWVR
Trigger: CCTGACCCAACCCTCTGGGCAATTTTCCAGCCCATA...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCAGTCACCTCAGGGAGTaGACAGATGACTCCTGCATC +
Preference number: 4 (lower is better)
Translates to: SWLYMGKRESLARESMAASHLRE*TDDSCI
Trigger: GATGCAGGAGTCATCTGTGCACTCCCTGAGGTGACT...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCCCCTTTCCAGCTaGAAATCTCTGAAGACCACA +
Preference number: 4 (lower is better)
Translates to: YMGKRESLARESMAATSAQPLSS*KSLKTT
Trigger: TGTGGTCTTCAGAGATTTGCAGCTGGAAAGGGGCTG...AGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGACAGCCCCTTTCCAGCTaGAAATCTCTGAAGACCACA +
Preference number: 4 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGQPLSS*KSLKTT
Trigger: TGTGGTCTTCAGAGATTTGCAGCTGGAAAGGGGCTG...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGGGCTCCTCTTTTCTTTaGTGGGGGATTGCAACTGGA +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQGSSFL*WGIATG
Trigger: TCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCC...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCGACGGCCTGGGAGCTTaGTGGCTTCTTCACATCCTC +
Preference number: 4 (lower is better)
Translates to: VACDCRHWSHSPMTFFLADGLGA*WLLHIL
Trigger: GAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTC...GGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCTTGACAGACGACATCTaGATCCTGGGTGTCCCAGCT +
Preference number: 4 (lower is better)
Translates to: SWLYMGKRESLARESMAALTDDI*ILGVPA
Trigger: AGCTGGGACACCCAGGATGCAGATGTCGTCTGTCAA...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTAAAGTAGGCATTTCCTaGGGCAGACACGGCCCAGCC +
Preference number: 4 (lower is better)
Translates to: ESWLYMGKRESLARESMAKVGIS*GRHGPA
Trigger: GGCTGGGCCGTGTCTGCCCCAGGAAATGCCTACTTT...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTTGCCCTGTCCAAACCTaGCACTTCCTGGGGCAGACA +
Preference number: 4 (lower is better)
Translates to: ESWLYMGKRESLARESMACPVQT*HFLGQT
Trigger: TGTCTGCCCCAGGAAGTGCCAGGTTTGGACAGGGCA...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR CCA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGGCCTGGTTGTGCTCTaGATTTGGGCATCTGAACAG +
Preference number: 4 (lower is better)
Translates to: VSGCQASGSHVFHLFWESGLVVL*IWASEQ
Trigger: CTGTTCAGATGCCCAAATCCAGAGCACAACCAGGCC...AGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCGGCCTGGTTGTGCTCTaGATTTGGGCATCTGAACAG +
Preference number: 4 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSGLVVL*IWASEQ
Trigger: CTGTTCAGATGCCCAAATCCAGAGCACAACCAGGCC...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGAACCAAGCATTTCCTaGTGCAGACAGAGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: VSGCQASGSHVFHLFWESEPSIS*CRQSRA
Trigger: GGCTCTGCTCTGTCTGCACCAGGAAATGCTTGGTTC...AGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTAATTGCCCAGAGGGTTaGGTCAGGAAACCTCCACAA +
Preference number: 4 (lower is better)
Translates to: YMGKRESLARESMAATSANCPEG*VRKPPQ
Trigger: TTGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATT...AGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCCGTAGTATGGGCTGCTaGTCACTGGAAACAAGAAGG +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCRSMGC*SLETRR
Trigger: CCTTCTTGTTTCCAGTGACCAGCAGCCCATACTACG...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTGGCCTGGGAGCTTGCTaGCTTCTTCACATCCTCCAC +
Preference number: 4 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTGLGAC*LLHILH
Trigger: GTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCC...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCTTGGGAGGACAATTCTaGGTCGAGGCTCCTCTTTTC +
Preference number: 4 (lower is better)
Translates to: SVRLSCLPSFLGICACGALGGQF*VEAPLF
Trigger: GAAAAGAGGAGCCTCGACCCAGAATTGTCCTCCCAA...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR CCA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCTGTGGCCACAGTCATaGTTGTACCACCCGTCATGT +
Preference number: 4 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSLWPQS*LYHPSC
Trigger: ACATGACGGGTGGTACAACCATGACTGTGGCCACAG...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
3UTR CAA 72 bp GAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTaGCCTGTGATTGTAGACACTGGTCTCATTCTCCTA +
Preference number: 4 (lower is better)
Translates to: EKAWLPPVLSSQ*PVIVDTGLILL
Trigger: TAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGGAGAATCTGAACAGATaGCTCCAGCATCTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQENLNR*LQHLPG
Trigger: ACCAGGAAGATGCTGGAGTCATCTGTTCAGATTCTC...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCTGGATTTGGGCATCTaGACAGATGACTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHLDLGI*TDDSSI
Trigger: GATGCTGGAGTCATCTGTTCAGATGCCCAAATCCAG...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCAAGCTGCACATCTGTaGAGACCACTGTCACACGGT +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNQAAHL*RPLSHG
Trigger: ACCGTGTGACAGTGGTCTTCACAGATGTGCAGCTTG...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGCACACACCCGAGCAATaGGAGACGAATTGTACTGAG +
Preference number: 4 (lower is better)
Translates to: CQASGSHVFHLFWESVLVHTPEQ*ETNCTE
Trigger: CTCAGTACAATTCGTCTCTCATTGCTCGGGTGTGTG...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAGTTCCAACCAGGAATaGCAAGATCCCTGGCAGAAT +
Preference number: 4 (lower is better)
Translates to: SVRLSCLPSFLGICACGASSNQE*QDPWQN
Trigger: ATTCTGCCAGGGATCTTGTCATTCCTGGTTGGAACT...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGGCAGCATCTTGCAGCTaGCGTGGATATTCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGAASCS*RGYSGP
Trigger: AGGACCTGAATATCCACGTCAGCTGCAAGATGCTGC...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTCGAAATTGCCATACTaGACTTCCTGGATCTCCACT +
Preference number: 4 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSSKLPY*TSWIST
Trigger: AGTGGAGATCCAGGAAGTTCAGTATGGCAATTTCGA...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCATCGAAATTGCCATACTaGACTTCCTGGATCTCCACT +
Preference number: 4 (lower is better)
Translates to: HGEKGKSSERKHGCHQCSSKLPY*TSWIST
Trigger: AGTGGAGATCCAGGAAGTTCAGTATGGCAATTTCGA...TGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ACCAGTGCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTTGGAGGATTTCGGCCTaGAGGTACAAATTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: TSAQLTVACDCRHWSHSPWRISA*RYKFWS
Trigger: GGACCAGAATTTGTACCTTCAGGCCGAAATCCTCCA...AGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTCGTCACACACAGTaGCCCAGGAACCCTGGTAAA +
Preference number: 4 (lower is better)
Translates to: LMSSIFSGNLCLWSQCLGCRHTQ*PRNPGK
Trigger: TTTACCAGGGTTCCTGGGGCACTGTGTGTGACGACA...ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCCATCAGGTGTGGGACTaGTTGATTGAGAAGCTGAAC +
Preference number: 4 (lower is better)
Translates to: SVRLSCLPSFLGICACGAHQVWD*LIEKLN
Trigger: GTTCAGCTTCTCAATCAAGCAGTCCCACACCTGATG...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCTCAGGAACGGTTGTCTaGTCTGCTGTGGTTTGGTCA +
Preference number: 4 (lower is better)
Translates to: SWLYMGKRESLARESMAASGTVV*SAVVWS
Trigger: TGACCAAACCACAGCAGAGCAGACAACCGTTCCTGA...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGCAGCCTCCTTCAAGCTaGACATCTGTGAAGACCACT +
Preference number: 4 (lower is better)
Translates to: CQASGSHVFHLFWESVLVQPPSS*TSVKTT
Trigger: AGTGGTCTTCACAGATGTGCAGCTTGAAGGAGGCTG...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTGGATATAGTCAAAGCTaGAGCCTCCTTCAAGCTGCA +
Preference number: 4 (lower is better)
Translates to: YMGKRESLARESMAATSAGYSQS*SLLQAA
Trigger: TGCAGCTTGAAGGAGGCTGCAGCTTTGACTATATCC...AGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCTGCACAGATGACTCCTaGATCCTCAGAATGGCGACA +
Preference number: 4 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSCTDDS*ILRMAT
Trigger: TGTCGCCATTCTGAGGATGCAGGAGTCATCTGTGCA...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACAAGTCACCTCAGGGAGTaGACAGATGACTCCTGCATC +
Preference number: 4 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTSHLRE*TDDSCI
Trigger: GATGCAGGAGTCATCTGTGCACTCCCTGAGGTGACT...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAACTACCAGTTTACACTaGAGGTACACTGAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGTTSLH*RYTEGK
Trigger: CTTCCCCTCAGTGTACCTGCAGTGTAAACTGGTAGT...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCACTACCAGTTTACACTaGAGGTACACTGAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCTTSLH*RYTEGK
Trigger: CTTCCCCTCAGTGTACCTGCAGTGTAAACTGGTAGT...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAACTTGGTCCCAATGTGAAGGCTaGCACAGCCAGGACCATGGC +
Preference number: 4 (lower is better)
Translates to: FSYDILPSLQSVDPGKTWSQCEG*HSQDHG
Trigger: GCCATGGTCCTGGCTGTGGCAGCCTTCACATTGGGA...CCAAGTTTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCGTTATTTGTCCCTCCTaGATTCCACCAGCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: SWLYMGKRESLARESMAAVICPS*IPPARC
Trigger: ACACCTGGCTGGTGGAATCCAGGAGGGACAAATAAC...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGATTATTTGTCCCTCCTaGATTCCACCAACCAGGTGT +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQIICPS*IPPTRC
Trigger: ACACCTGGTTGGTGGAATCCAGGAGGGACAAATAAT...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTGTTGTGCTCTGGATTTaGGCATCTGAACAGATGACT +
Preference number: 4 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSVVLWI*ASEQMT
Trigger: AGTCATCTGTTCAGATGCCCAAATCCAGAGCACAAC...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATGAACCAAGCATTTCCTaGTGCAGACAGAGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNEPSIS*CRQSRA
Trigger: GGCTCTGCTCTGTCTGCACCAGGAAATGCTTGGTTC...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTATTCCCAGGGTAGAATaGGCTAGAAAATTGCCCAGA +
Preference number: 4 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSIPRVE*ARKLPR
Trigger: TCTGGGCAATTTTCTAGCCCATTCTACCCTGGGAAT...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ACCAGTGCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTAGCTCCTGCTCACGCTaGCTTGCATGTGATTTGACT +
Preference number: 4 (lower is better)
Translates to: TSAQLTVACDCRHWSHSPSSCSR*LACDLT
Trigger: AGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCT...AGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGTGGGCTGCTGGTCACTaGAAACAAGAAGGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGWAAGH*KQEGGG
Trigger: TCCTCCTCCTTCTTGTTTCCAGTGACCAGCAGCCCA...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATTGGGCTGCTGGTCACTaGAAACAAGAAGGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNWAAGH*KQEGGG
Trigger: TCCTCCTCCTTCTTGTTTCCAGTGACCAGCAGCCCA...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCGTGGGAACAGCTGTTTaGGATGCTGTAGACAGAATT +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCVGTAV*DAVDRI
Trigger: AATTCTGTCTACAGCATCTCAAACAGCTGTTCCCAC...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCGAGAATCTGAACAGATaGCTCCAGCATCTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: SWLYMGKRESLARESMAAENLNR*LQHLPG
Trigger: ACCAGGAAGATGCTGGAGTCATCTGTTCAGATTCTC...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTGCTTGTTTGAGAATCTaGACAGATGACTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: YMGKRESLARESMAATSAACLRI*TDDSSI
Trigger: GATGCTGGAGTCATCTGTTCAGATTCTCAAACAAGC...AGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACGTGGGACTGCTTGATTaGGAAGCTGAACAGATGACT +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHVGLLD*EAEQMT
Trigger: AGTCATCTGTTCAGCTTCTCAATCAAGCAGTCCCAC...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCATTGTTAGGATAGTTTaGAGGGTAGTGTGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCIVRIV*RVVWAG
Trigger: TCCAGCCCACACTACCCTTCAAACTATCCTAACAAT...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AGATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGGCCCTCACACCGGTTTaGTCCATTTACCAGCCTCAG +
Preference number: 4 (lower is better)
Translates to: RWRKLAIHGEKGKSSERKALTPV*SIYQPQ
Trigger: CTGAGGCTGGTAAATGGATCAAACCGGTGTGAGGGC...CTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TGGCTTCTTCACATCCTCCACTGCCAAGTCCCCGTTGTCTTCCCAACCAAGAGACTCGCAGTAATACTGTaGTCAGTGATGAAGCGAATT +
Preference number: 4 (lower is better)
Translates to: WLLHILHCQVPVVFPTKRLAVIL*SVMKRI
Trigger: AATTCGCTTCATCACTGATCACAGTATTACTGCGAG...TCTCTTGGTTGGGAAGACAACGGGGACTTGGCAGTGGAGGATGTGAAGAAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR TCA 90 bp CATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCACTCGCAGTAATACTGTaGTCAGTGATGAAGCGAATT +
Preference number: 4 (lower is better)
Translates to: HGEKGKSSERKHGCHQCSLAVIL*SVMKRI
Trigger: AATTCGCTTCATCACTGATCACAGTATTACTGCGAG...TGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCAGTTCCAACCAGGAATaGCAAGATCCCTGGCAGAAT +
Preference number: 4 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSSSNQE*QDPWQN
Trigger: ATTCTGCCAGGGATCTTGTCATTCCTGGTTGGAACT...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCGCAGCATCTTGCAGCTaGCGTGGATATTCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: VACDCRHWSHSPMTFFLAAASCS*RGYSGP
Trigger: AGGACCTGAATATCCACGTCAGCTGCAAGATGCTGC...GGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCGCATCCACTCCGGATaGGATCATATGTCAAAGATG +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHRIHSG*DHMSKM
Trigger: CATCTTTGACATATGATCTCATCCGGAGTGGATGCG...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ACCAGTGCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTCGCATCCACTCCGGATaGGATCATATGTCAAAGATG +
Preference number: 4 (lower is better)
Translates to: TSAQLTVACDCRHWSHSPRIHSG*DHMSKM
Trigger: CATCTTTGACATATGATCTCATCCGGAGTGGATGCG...AGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AGATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGACACTGCAGGTACACTaGGGGGAAGCGGTTCAGGAA +
Preference number: 4 (lower is better)
Translates to: RWRKLAIHGEKGKSSERKTLQVH*GEAVQE
Trigger: TTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGT...CTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAACACTGCAGGTACACTaGGGGGAAGCGGTTCAGGAA +
Preference number: 4 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKTLQVH*GEAVQE
Trigger: TTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGT...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTATAGGACACTTCTaGGCATACAACTCCGGCGTC +
Preference number: 4 (lower is better)
Translates to: LMSSIFSGNLCLWSQCLGCIGHF*AYNSGV
Trigger: GACGCCGGAGTTGTATGCTCAGAAGTGTCCTATACA...ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGACCAGAATCTGTTCCTaGAGTGGTTTGTTCAGTTGG +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQTRICS*SGLFSW
Trigger: CCAACTGAACAAACCACTGCAGGAACAGATTCTGGT...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCATCAGGTGTGGGACTaGTTGATTGAGAAGCTGAAC +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHHQVWD*LIEKLN
Trigger: GTTCAGCTTCTCAATCAAGCAGTCCCACACCTGATG...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCATCAGGTGTGGGACTaGTTGATTGAGAAGCTGAAC +
Preference number: 4 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSHQVWD*LIEKLN
Trigger: GTTCAGCTTCTCAATCAAGCAGTCCCACACCTGATG...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCGATCTGGCCTGGTTGTaGTCTGGATTTGGGCATCTG +
Preference number: 4 (lower is better)
Translates to: DGESWLYMGKRESLARESDLAWL*SGFGHL
Trigger: CAGATGCCCAAATCCAGAGCACAACCAGGCCAGATC...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCCAGCCTCCTTCAAGCTaGACATCTGTGAAGGCCACT +
Preference number: 4 (lower is better)
Translates to: DGESWLYMGKRESLARESQPPSS*TSVKAT
Trigger: AGTGGCCTTCACAGATGTGCAGCTTGAAGGAGGCTG...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTCAGCCTCCTTCAAGCTaGACATCTGTGAAGGCCACT +
Preference number: 4 (lower is better)
Translates to: ESWLYMGKRESLARESMAQPPSS*TSVKAT
Trigger: AGTGGCCTTCACAGATGTGCAGCTTGAAGGAGGCTG...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTCCAAGCATTTCCTGGTaGAGACAGAGCAGAGCCACA +
Preference number: 4 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTPSISW*RQSRAT
Trigger: TGTGGCTCTGCTCTGTCTGCACCAGGAAATGCTTGG...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTTGCACAGATGACTCCTaGATCCTCAGAATGGCGACA +
Preference number: 4 (lower is better)
Translates to: GSHVFHLFWESVLVEPMSCTDDS*ILRMAT
Trigger: TGTCGCCATTCTGAGGATGCAGGAGTCATCTGTGCA...AGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAATGGGCTAGAAAATTaGCCAGAGGGTTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGNGLEN*PEGWVR
Trigger: CCTGACCCAACCCTCTGGGCAATTTTCTAGCCCATT...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTTTGACCCAGGTGTTCTaGAGCATCTTGCAGCTGACG +
Preference number: 4 (lower is better)
Translates to: ESWLYMGKRESLARESMALTQVF*SILQLT
Trigger: CGTCAGCTGCAAGATGCTGCAGAACACCTGGGTCAA...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACACTACCAGTTTACACTaGAGGTACACTGAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHTTSLH*RYTEGK
Trigger: CTTCCCCTCAGTGTACCTGCAGTGTAAACTGGTAGT...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTCCACCAGCCAGGTGTaGGACTGCTTGTTTGAGAAT +
Preference number: 4 (lower is better)
Translates to: LMSSIFSGNLCLWSQCLGSTSQV*DCLFEN
Trigger: ATTCTCAAACAAGCAGTCCCACACCTGGCTGGTGGA...ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATCCACCAGCCAGGTGTaGGACTGCTTGTTTGAGAAT +
Preference number: 4 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTSTSQV*DCLFEN
Trigger: ATTCTCAAACAAGCAGTCCCACACCTGGCTGGTGGA...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAATTGTCCAGAGGGTTaGGTCAGGAGACCTCCACAG +
Preference number: 4 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFNCPEG*VRRPPQ
Trigger: CTGTGGAGGTCTCCTGACCCAACCCTCTGGACAATT...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATGTAGTCATCTGTGGTTaGGATTGGCACTGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNVVICG*DWHWRS
Trigger: ACTCCTCCAGTGCCAATCCCAACCACAGATGACTAC...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTGTAGTCATCTGTGGTTaGGATTGGCACTGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: LMSSIFSGNLCLWSQCLGVVICG*DWHWRS
Trigger: ACTCCTCCAGTGCCAATCCCAACCACAGATGACTAC...ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAATTGCCCAGAGGGTTaGGTCAGGAAACCTCCACAA +
Preference number: 4 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGNCPEG*VRKPPQ
Trigger: TTGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATT...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTATTCCCAGGGTAGAATaGGCTAGAAAATTGCCCAGA +
Preference number: 4 (lower is better)
Translates to: YMGKRESLARESMAATSAIPRVE*ARKLPR
Trigger: TCTGGGCAATTTTCTAGCCCATTCTACCCTGGGAAT...AGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACACACACGGTAGTTGTTTaGGACCTCGATGTTCCACAG +
Preference number: 4 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTHTVVV*DLDVPQ
Trigger: CTGTGGAACATCGAGGTCCCAAACAACTACCGTGTG...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTATGAGAGGTGAACTGTaGTGGGGGCCATCAAAAATC +
Preference number: 4 (lower is better)
Translates to: VSGCQASGSHVFHLFWESMRGEL*WGPSKI
Trigger: GATTTTTGATGGCCCCCACCACAGTTCACCTCTCAT...AGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTAGCTCCTGCTCACGCTaGCTTGCATGTGATTTGACT +
Preference number: 4 (lower is better)
Translates to: LMSSIFSGNLCLWSQCLGSSCSR*LACDLT
Trigger: AGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCT...ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
3UTR CAA 72 bp CTGGGTTGTTTCACTTCACAACTTAGTACTTGGAGGTaGGCCACGGTCAATGTGTGTCCTCCTTCCCAATGT +
Preference number: 4 (lower is better)
Translates to: LGCFTSQLSTWR*ATVNVCPPSQC
Trigger: ACATTGGGAAGGAGGACACACATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGAAGTGAAACAACCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR TCA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAGGGCATCTGAACAGATaGCTCCAGCATCCTCATGGT +
Preference number: 4 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKGHLNR*LQHPHG
Trigger: ACCATGAGGATGCTGGAGTCATCTGTTCAGATGCCC...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTCTGGATTTGGGCATCTaGACAGATGACTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTLDLGI*TDDSSI
Trigger: GATGCTGGAGTCATCTGTTCAGATGCCCAAATCCAG...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGGCTTGCATGTGATTTaGCTGACAAAGGAGATTGGT +
Preference number: 4 (lower is better)
Translates to: CQASGSHVFHLFWESVLVGLHVI*LTKEIG
Trigger: ACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCC...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTTGGAGGATTTCGGCCTaGAGGTACAAATTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTWRISA*RYKFWS
Trigger: GGACCAGAATTTGTACCTTCAGGCCGAAATCCTCCA...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCTGGAGGATTTCGGCCTaGAGGTACAAATTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFWRISA*RYKFWS
Trigger: GGACCAGAATTTGTACCTTCAGGCCGAAATCCTCCA...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTCGCATCCACTCCGGATaGGATCATATGTCAAAGATG +
Preference number: 4 (lower is better)
Translates to: GSHVFHLFWESVLVEPMSRIHSG*DHMSKM
Trigger: CATCTTTGACATATGATCTCATCCGGAGTGGATGCG...AGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGCGCATCCACTCCGGATaGGATCATATGTCAAAGATG +
Preference number: 4 (lower is better)
Translates to: LSCLPSFLGICACGANVWRIHSG*DHMSKM
Trigger: CATCTTTGACATATGATCTCATCCGGAGTGGATGCG...CCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGAACAGCTGTTTGAGATaGTGTAGACAGAATTTGACC +
Preference number: 4 (lower is better)
Translates to: MGKRESLARESMAATSAQNSCLR*CRQNLT
Trigger: GGTCAAATTCTGTCTACAGCATCTCAAACAGCTGTT...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAGCCAGGTGTGGGACTaGTTGTTTGAGAATCTGAAC +
Preference number: 4 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGSQVWD*LFENLN
Trigger: GTTCAGATTCTCAAACAAGCAGTCCCACACCTGGCT...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAACTTGGGATCTGGCCTGGTTGTaGTCTGGATTTGGGCATCTG +
Preference number: 4 (lower is better)
Translates to: FSYDILPSLQSVDPGKTWDLAWL*SGFGHL
Trigger: CAGATGCCCAAATCCAGAGCACAACCAGGCCAGATC...CCAAGTTTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTATGGGCTGGAAAATTaGCCAGAGGGTTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: DCRHWSHSPMTFFLAFSLYGLEN*PEGWVR
Trigger: CCTGACCCAACCCTCTGGGCAATTTTCCAGCCCATA...CAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACCAGCCTCCTTCAAGCTaGACATCTGTGAAGACCACT +
Preference number: 4 (lower is better)
Translates to: FHLFWESVLVEPMSGLFHQPPSS*TSVKTT
Trigger: AGTGGTCTTCACAGATGTGCAGCTTGAAGGAGGCTG...GTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGGATATAGTCAAAGCTaGAGCCTCCTTCAAGCTGCA +
Preference number: 4 (lower is better)
Translates to: LSCLPSFLGICACGANVWGYSQS*SLLQAA
Trigger: TGCAGCTTGAAGGAGGCTGCAGCTTTGACTATATCC...CCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACAATGGGCTAGAAAATTaGCCAGAGGGTTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: FHLFWESVLVEPMSGLFHNGLEN*PEGWVR
Trigger: CCTGACCCAACCCTCTGGGCAATTTTCTAGCCCATT...GTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGACTGAAGGTAGCTCCTaGTCACGCTGGCTTGCATGT +
Preference number: 4 (lower is better)
Translates to: DCRHWSHSPMTFFLAFSLTEGSS*SRWLAC
Trigger: ACATGCAAGCCAGCGTGAGCAGGAGCTACCTTCAGT...CAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGGCTCCTCTTTTCTTTaGTGGGGGATTGCAACTGGA +
Preference number: 4 (lower is better)
Translates to: ESWLYMGKRESLARESMAGSSFL*WGIATG
Trigger: TCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCC...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACGTGTATAATCAGGAATaGTTGTCTGCTCTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHVYNQE*LSALLW
Trigger: CCACAGCAGAGCAGACAACCATTCCTGATTATACAC...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTTCTGTTGTAGTTTCTaGGGTAGTAGTAGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQFCCSF*GSSSRP
Trigger: TGGCCTACTACTACTACCCCAGAAACTACAACAGAA...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATCACACGGTTCATGTTaGGGACCAATATTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTSHGSC*GPIFPR
Trigger: CCTGGGAAATATTGGTCCCCAACATGAACCGTGTGA...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGTCACACGGTTCATGTTaGGGACCAATATTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: LSCLPSFLGICACGANVWSHGSC*GPIFPR
Trigger: CCTGGGAAATATTGGTCCCCAACATGAACCGTGTGA...CCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAACTTGGGGTTGGGATTGGCACTaGAGGAGTTGTGCTGACTGT +
Preference number: 4 (lower is better)
Translates to: FSYDILPSLQSVDPGKTWGWDWH*RSCADC
Trigger: ACAGTCAGCACAACTCCTCCAGTGCCAATCCCAACC...CCAAGTTTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAATTGCCCAGAGGGTTaGGTCAGGAAACCTCCACAA +
Preference number: 4 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFNCPEG*VRKPPQ
Trigger: TTGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATT...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCCACACGGTAGTTGTTTaGGACCTCGATGTTCCACAG +
Preference number: 4 (lower is better)
Translates to: VACDCRHWSHSPMTFFLAHTVVV*DLDVPQ
Trigger: CTGTGGAACATCGAGGTCCCAAACAACTACCGTGTG...GGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCCACACGGTAGTTGTTTaGGACCTCGATGTTCCACAG +
Preference number: 4 (lower is better)
Translates to: DGESWLYMGKRESLARESHTVVV*DLDVPQ
Trigger: CTGTGGAACATCGAGGTCCCAAACAACTACCGTGTG...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACAATGAGAGGTGAACTGTaGTGGGGGCCATCAAAAATC +
Preference number: 4 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTMRGEL*WGPSKI
Trigger: GATTTTTGATGGCCCCCACCACAGTTCACCTCTCAT...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TTGCAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCGGCCTGGGAGCTTGCTaGCTTCTTCACATCCTCCAC +
Preference number: 4 (lower is better)
Translates to: LQYCKKKLTSTLQMEKVGGLGAC*LLHILH
Trigger: GTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCC...GCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTGCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACTCACAACTTAGTACTTaGAGGTTGGCCACGGTCAAT +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHSQLST*RLATVN
Trigger: ATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGA...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCGAGAATCTGAACAGATaGCTCCAGCATCTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFENLNR*LQHLPG
Trigger: ACCAGGAAGATGCTGGAGTCATCTGTTCAGATTCTC...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGCCATCTCATTGTTCTTGGCTAAGCATTTGTGCTAAGGGAATCCTAGTCACCGAGAAGCTGAACAGATaGCTCCAGCATCTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: LPSHCSWLSICAKGILVTEKLNR*LQHLPG
Trigger: ACCAGGAAGATGCTGGAGTCATCTGTTCAGCTTCTC...GGTGACTAGGATTCCCTTAGCACAAATGCTTAGCCAAGAACAATGAGATGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACATTGTTTGGATAGTTTaGAGGGTAGTATGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHIVWIV*RVVWAG
Trigger: TCCAGCCCATACTACCCTTCAAACTATCCAAACAAT...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTCACAAACCCGAGCAATaGGAGAAGAATTGTATTCAG +
Preference number: 4 (lower is better)
Translates to: VSGCQASGSHVFHLFWESHKPEQ*EKNCIQ
Trigger: CTGAATACAATTCTTCTCTCATTGCTCGGGTTTGTG...AGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAACTTGGCACACACCCGAGCAATaGGAGACGAATTGTACTGAG +
Preference number: 4 (lower is better)
Translates to: FSYDILPSLQSVDPGKTWHTPEQ*ETNCTE
Trigger: CTCAGTACAATTCGTCTCTCATTGCTCGGGTGTGTG...CCAAGTTTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTATTGTTAGGATAGTTTaGAGGGTAGTGTGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: LMSSIFSGNLCLWSQCLGIVRIV*RVVWAG
Trigger: TCCAGCCCACACTACCCTTCAAACTATCCTAACAAT...ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAGTTATGTTTGGGAATaGTGGAGGACTTGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGSYVWE*WRTCAD
Trigger: GTCAGCACAAGTCCTCCATCATTCCCAAACATAACT...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGCTTGCATGTGATTTaGCTGACAAAGGAGATTGGT +
Preference number: 4 (lower is better)
Translates to: GSHVFHLFWESVLVEPMSGLHVI*LTKEIG
Trigger: ACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCC...AGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCAGTTCCAACCAGGAATaGCAAGATCCCTGGCAGAAT +
Preference number: 4 (lower is better)
Translates to: VACDCRHWSHSPMTFFLASSNQE*QDPWQN
Trigger: ATTCTGCCAGGGATCTTGTCATTCCTGGTTGGAACT...GGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCATCATATGTCAAAGATaGGAAGTCATTGGGATGTGG +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCIICQR*EVIGMW
Trigger: CCACATCCCAATGACTTCTCATCTTTGACATATGAT...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTATCATATGTCAAAGATaGGAAGTCATTGGGATGTGG +
Preference number: 4 (lower is better)
Translates to: YMGKRESLARESMAATSAIICQR*EVIGMW
Trigger: CCACATCCCAATGACTTCTCATCTTTGACATATGAT...AGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGCAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCACACTGCAGGTACACTaGGGGGAAGCGGTTCAGGAA +
Preference number: 4 (lower is better)
Translates to: LQYCKKKLTSTLQMEKVGTLQVH*GEAVQE
Trigger: TTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGT...GCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATGTAGGACTCCCATCCTaGGCAGTGCACAGCTCCCAA +
Preference number: 4 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYVGLPS*AVHSSQ
Trigger: TTGGGAGCTGTGCACTGCTCAGGATGGGAGTCCTAC...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCAGCCAGGTGTGGGACTaGTTGTTTGAGAATCTGAAC +
Preference number: 4 (lower is better)
Translates to: DGESWLYMGKRESLARESSQVWD*LFENLN
Trigger: GTTCAGATTCTCAAACAAGCAGTCCCACACCTGGCT...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCAACCAGGTGTGGGACTaGTTGATTGAGAAGCTGAAC +
Preference number: 4 (lower is better)
Translates to: DGESWLYMGKRESLARESNQVWD*LIEKLN
Trigger: GTTCAGCTTCTCAATCAAGCAGTCCCACACCTGGTT...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATACCAGAATCTGTTCCTaGAGTGGTTTGTTCAGTTGG +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNTRICS*SGLFSW
Trigger: CCAACTGAACAAACCACTGCAGGAACAGATTCTGGT...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCGGATATAGTCAAAGCTaGAGCCTCCTTCAAGCTGCA +
Preference number: 4 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFGYSQS*SLLQAA
Trigger: TGCAGCTTGAAGGAGGCTGCAGCTTTGACTATATCC...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTGCCATCTCATTGTTCTTGGCTAAGCATTTGTGCTAAGGGAATCCTAGTCACCCAGCCCCTTTCCAGCTaGAAATCTCTGAAGACCACA +
Preference number: 4 (lower is better)
Translates to: LPSHCSWLSICAKGILVTQPLSS*KSLKTT
Trigger: TGTGGTCTTCAGAGATTTGCAGCTGGAAAGGGGCTG...GGTGACTAGGATTCCCTTAGCACAAATGCTTAGCCAAGAACAATGAGATGGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGCTATATAATCATAGCTaGAGCCCCTTTCCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: LSCLPSFLGICACGANVWLYNHS*SPFPAA
Trigger: TGCAGCTGGAAAGGGGCTGCAGCTATGATTATATAG...CCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAGGCTCCTCTTTTCTTTaGTGGGGGATTGCAACTGGA +
Preference number: 4 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKGSSFL*WGIATG
Trigger: TCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCC...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AGATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGTCCACCAGCCAGGTGTaGGACTGCTTGTTTGAGAAT +
Preference number: 4 (lower is better)
Translates to: RWRKLAIHGEKGKSSERKSTSQV*DCLFEN
Trigger: ATTCTCAAACAAGCAGTCCCACACCTGGCTGGTGGA...CTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTGTATAATCAGGAATaGTTGTCTGCTCTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: LSCLPSFLGICACGANVWVYNQE*LSALLW
Trigger: CCACAGCAGAGCAGACAACCATTCCTGATTATACAC...CCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGATTATTTGTCCCTCCTaGATTCCACCAACCAGGTGT +
Preference number: 4 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGIICPS*IPPTRC
Trigger: ACACCTGGTTGGTGGAATCCAGGAGGGACAAATAAT...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACAGTTGTGCTCTGGATTTaGGCATCTGAACAGATGACT +
Preference number: 4 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTVVLWI*ASEQMT
Trigger: AGTCATCTGTTCAGATGCCCAAATCCAGAGCACAAC...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ACCAGTGCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTTTCTGTTGTAGTTTCTaGGGTAGTAGTAGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: TSAQLTVACDCRHWSHSPFCCSF*GSSSRP
Trigger: TGGCCTACTACTACTACCCCAGAAACTACAACAGAA...AGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCTCACACGGTTCATGTTaGGGACCAATATTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: DGESWLYMGKRESLARESSHGSC*GPIFPR
Trigger: CCTGGGAAATATTGGTCCCCAACATGAACCGTGTGA...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAAGCTCCTGCTCACGCTaGCTTGCATGTGATTTGACT +
Preference number: 4 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKSSCSR*LACDLT
Trigger: AGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCT...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AGATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCGTAGTATGGGCTGCTaGTCACTGGAAACAAGAAGG +
Preference number: 4 (lower is better)
Translates to: RWRKLAIHGEKGKSSERKRSMGC*SLETRR
Trigger: CCTTCTTGTTTCCAGTGACCAGCAGCCCATACTACG...CTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTCACAACTTAGTACTTaGAGGTTGGCCACGGTCAAT +
Preference number: 4 (lower is better)
Translates to: LMSSIFSGNLCLWSQCLGSQLST*RLATVN
Trigger: ATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGA...ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATAGGACACTTCATCTGTaGGAACAGCTGTTTGAGATG +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNRTLHL*EQLFEM
Trigger: CATCTCAAACAGCTGTTCCCACAGATGAAGTGTCCT...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208311.4
CDS-3UTR TCA 90 bp TTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACGTGGGAACAGCTGTTTaGGATGCTGTAGACAGAATT +
Preference number: 4 (lower is better)
Translates to: FHLFWESVLVEPMSGLFHVGTAV*DAVDRI
Trigger: AATTCTGTCTACAGCATCTCAAACAGCTGTTCCCAC...GTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCGCTTGTTTGAGAATCTaGACAGATGACTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: VACDCRHWSHSPMTFFLAACLRI*TDDSSI
Trigger: GATGCTGGAGTCATCTGTTCAGATTCTCAAACAAGC...GGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCTTGTTTGAGAATCTaGACAGATGACTCCAGCATC +
Preference number: 4 (lower is better)
Translates to: ESWLYMGKRESLARESMAACLRI*TDDSSI
Trigger: GATGCTGGAGTCATCTGTTCAGATTCTCAAACAAGC...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGCCATCTCATTGTTCTTGGCTAAGCATTTGTGCTAAGGGAATCCTAGTCACCGTGGGACTGCTTGATTaGGAAGCTGAACAGATGACT +
Preference number: 4 (lower is better)
Translates to: LPSHCSWLSICAKGILVTVGLLD*EAEQMT
Trigger: AGTCATCTGTTCAGCTTCTCAATCAAGCAGTCCCAC...GGTGACTAGGATTCCCTTAGCACAAATGCTTAGCCAAGAACAATGAGATGGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGCAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCGGGCATCTGAACAGATaGCTCCAGCATCCTCATGGT +
Preference number: 4 (lower is better)
Translates to: LQYCKKKLTSTLQMEKVGGHLNR*LQHPHG
Trigger: ACCATGAGGATGCTGGAGTCATCTGTTCAGATGCCC...GCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATATTGTTTGGATAGTTTaGAGGGTAGTATGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNIVWIV*RVVWAG
Trigger: TCCAGCCCATACTACCCTTCAAACTATCCAAACAAT...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGATTGTTTGGATAGTTTaGAGGGTAGTATGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGIVWIV*RVVWAG
Trigger: TCCAGCCCATACTACCCTTCAAACTATCCAAACAAT...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCACAAACCCGAGCAATaGGAGAAGAATTGTATTCAG +
Preference number: 4 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNHKPEQ*EKNCIQ
Trigger: CTGAATACAATTCTTCTCTCATTGCTCGGGTTTGTG...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGCAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCCCAGCTGCAAATCTCTaGAGACCACAGTCACACGGT +
Preference number: 4 (lower is better)
Translates to: LQYCKKKLTSTLQMEKVGPAANL*RPQSHG
Trigger: ACCGTGTGACTGTGGTCTTCAGAGATTTGCAGCTGG...GCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCGGCTTGCATGTGATTTaGCTGACAAAGGAGATTGGT +
Preference number: 4 (lower is better)
Translates to: VACDCRHWSHSPMTFFLAGLHVI*LTKEIG
Trigger: ACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCC...GGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTGGCTTGCATGTGATTTaGCTGACAAAGGAGATTGGT +
Preference number: 4 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTGLHVI*LTKEIG
Trigger: ACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCC...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAAGTTCCAACCAGGAATaGCAAGATCCCTGGCAGAAT +
Preference number: 4 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKSSNQE*QDPWQN
Trigger: ATTCTGCCAGGGATCTTGTCATTCCTGGTTGGAACT...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGGCAGCATCTTGCAGCTaGCGTGGATATTCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWAASCS*RGYSGP
Trigger: AGGACCTGAATATCCACGTCAGCTGCAAGATGCTGC...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCTCGAAATTGCCATACTaGACTTCCTGGATCTCCACT +
Preference number: 4 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFSKLPY*TSWIST
Trigger: AGTGGAGATCCAGGAAGTTCAGTATGGCAATTTCGA...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCATCATATGTCAAAGATaGGAAGTCATTGGGATGTGG +
Preference number: 4 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSIICQR*EVIGMW
Trigger: CCACATCCCAATGACTTCTCATCTTTGACATATGAT...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTAACAGCTGTTTGAGATaGTGTAGACAGAATTTGACC +
Preference number: 4 (lower is better)
Translates to: VSGCQASGSHVFHLFWESNSCLR*CRQNLT
Trigger: GGTCAAATTCTGTCTACAGCATCTCAAACAGCTGTT...AGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTGCCATCTCATTGTTCTTGGCTAAGCATTTGTGCTAAGGGAATCCTAGTCACCAACCAGGTGTGGGACTaGTTGATTGAGAAGCTGAAC +
Preference number: 4 (lower is better)
Translates to: LPSHCSWLSICAKGILVTNQVWD*LIEKLN
Trigger: GTTCAGCTTCTCAATCAAGCAGTCCCACACCTGGTT...GGTGACTAGGATTCCCTTAGCACAAATGCTTAGCCAAGAACAATGAGATGGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGTGTCGTCACACACAGTaGCCCAGGATCCCTGGTAAA +
Preference number: 4 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWCRHTQ*PRIPGK
Trigger: TTTACCAGGGATCCTGGGGCACTGTGTGTGACGACA...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGTGGTTTGTTCAGTTaGATAGAACACATCGTTATT +
Preference number: 4 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSCGLFS*IEHIVI
Trigger: AATAACGATGTGTTCTATCCAACTGAACAAACCACA...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCATTATTTGTCCCTCCTaGATTCCACCAACCAGGTGT +
Preference number: 4 (lower is better)
Translates to: VACDCRHWSHSPMTFFLAIICPS*IPPTRC
Trigger: ACACCTGGTTGGTGGAATCCAGGAGGGACAAATAAT...GGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTTTCTGTTGTAGTTTCTaGGGTAGTAGTAGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: GSHVFHLFWESVLVEPMSFCCSF*GSSSRP
Trigger: TGGCCTACTACTACTACCCCAGAAACTACAACAGAA...AGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAATGAGAGGTGAACTGTaGTGGGGGCCATCAAAAATC +
Preference number: 4 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKMRGEL*WGPSKI
Trigger: GATTTTTGATGGCCCCCACCACAGTTCACCTCTCAT...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TTGCAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTGGGCTGCTGGTCACTaGAAACAAGAAGGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: LQYCKKKLTSTLQMEKVGWAAGH*KQEGGG
Trigger: TCCTCCTCCTTCTTGTTTCCAGTGACCAGCAGCCCA...GCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCTCACAACTTAGTACTTaGAGGTTGGCCACGGTCAAT +
Preference number: 4 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFSQLST*RLATVN
Trigger: ATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGA...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp AGATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGGTGGGAACAGCTGTTTaGGATGCTGTAGACAGAATT +
Preference number: 4 (lower is better)
Translates to: RWRKLAIHGEKGKSSERKVGTAV*DAVDRI
Trigger: AATTCTGTCTACAGCATCTCAAACAGCTGTTCCCAC...CTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTCACAAACCCGAGCAATaGGAGAAGAATTGTATTCAG +
Preference number: 4 (lower is better)
Translates to: ESWLYMGKRESLARESMAHKPEQ*EKNCIQ
Trigger: CTGAATACAATTCTTCTCTCATTGCTCGGGTTTGTG...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGATTGTTAGGATAGTTTaGAGGGTAGTGTGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: DCRHWSHSPMTFFLAFSLIVRIV*RVVWAG
Trigger: TCCAGCCCACACTACCCTTCAAACTATCCTAACAAT...CAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTCACACACCGGAGCAATaGGAGAAGAATTATATTCAG +
Preference number: 4 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTHTPEQ*EKNYIQ
Trigger: CTGAATATAATTCTTCTCTCATTGCTCCGGTGTGTG...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGAGTTATGTTTGGGAATaGTGGAGGACTTGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: DCRHWSHSPMTFFLAFSLSYVWE*WRTCAD
Trigger: GTCAGCACAAGTCCTCCATCATTCCCAAACATAACT...CAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAAGTTATGTTTGGGAATaGTGGAGGACTTGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKSYVWE*WRTCAD
Trigger: GTCAGCACAAGTCCTCCATCATTCCCAAACATAACT...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCCTCGCAGTAATACTGTaGTCAGTGATGAAGCGAATT +
Preference number: 4 (lower is better)
Translates to: VACDCRHWSHSPMTFFLALAVIL*SVMKRI
Trigger: AATTCGCTTCATCACTGATCACAGTATTACTGCGAG...GGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CTGGGTTGTTTCACTTCACAACTTAGTACTTGGAGGTTGGCCACGGTCAATGTGATCATATGTCAAAGATaGGAAGTCATTGGGATGTGG +
Preference number: 4 (lower is better)
Translates to: LGCFTSQLSTWRLATVNVIICQR*EVIGMW
Trigger: CCACATCCCAATGACTTCTCATCTTTGACATATGAT...CACATTGACCGTGGCCAACCTCCAAGTACTAAGTTGTGAAGTGAAACAACCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR GCA 90 bp GATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGACCAGAATCTGTTCCTaGAGTGGTTTGTTCAGTTGG +
Preference number: 4 (lower is better)
Translates to: DCRHWSHSPMTFFLAFSLTRICS*SGLFSW
Trigger: CCAACTGAACAAACCACTGCAGGAACAGATTCTGGT...CAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGCAGCCTCCTTCAAGCTaGACATCTGTGAAGACCACT +
Preference number: 4 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWQPPSS*TSVKTT
Trigger: AGTGGTCTTCACAGATGTGCAGCTTGAAGGAGGCTG...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAACTTGGCTATATAATCATAGCTaGAGCCCCTTTCCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: FSYDILPSLQSVDPGKTWLYNHS*SPFPAA
Trigger: TGCAGCTGGAAAGGGGCTGCAGCTATGATTATATAG...CCAAGTTTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAACTATATAATCATAGCTaGAGCCCCTTTCCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKLYNHS*SPFPAA
Trigger: TGCAGCTGGAAAGGGGCTGCAGCTATGATTATATAG...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp AGATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCTATATAATCATAGCTaGAGCCCCTTTCCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: RWRKLAIHGEKGKSSERKLYNHS*SPFPAA
Trigger: TGCAGCTGGAAAGGGGCTGCAGCTATGATTATATAG...CTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AGATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGGTGTATAATCAGGAATaGTTGTCTGCTCTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: RWRKLAIHGEKGKSSERKVYNQE*LSALLW
Trigger: CCACAGCAGAGCAGACAACCATTCCTGATTATACAC...CTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAGAATCTGTTCCTATTaGTGTATAATCAGGAATGGT +
Preference number: 4 (lower is better)
Translates to: SVRLSCLPSFLGICACGARICSY*CIIRNG
Trigger: ACCATTCCTGATTATACACCAATAGGAACAGATTCT...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAAGTGGTTTGTTCAGTTaGGTAGAACACATCATTATT +
Preference number: 4 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGSGLFS*VEHIII
Trigger: AATAATGATGTGTTCTACCCAACTGAACAAACCACT...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCAGTGGTTTGTTCAGTTaGGTAGAACACATCATTATT +
Preference number: 4 (lower is better)
Translates to: IHGEKGKSSERKHGCHQCSGLFS*VEHIII
Trigger: AATAATGATGTGTTCTACCCAACTGAACAAACCACT...GCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAGTTGTGCTCTGGATTTaGGCATCTGAACAGATGACT +
Preference number: 4 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKVVLWI*ASEQMT
Trigger: AGTCATCTGTTCAGATGCCCAAATCCAGAGCACAAC...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGGTAGTCATCTGTGGTTaGGATTGGCACTGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWVVICG*DWHWRS
Trigger: ACTCCTCCAGTGCCAATCCCAACCACAGATGACTAC...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAATTCCCAGGGTAGAATaGGCTAGAAAATTGCCCAGA +
Preference number: 4 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKIPRVE*ARKLPR
Trigger: TCTGGGCAATTTTCTAGCCCATTCTACCCTGGGAAT...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ACCAGTGCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTAAGCGGTTCAGGAAGTaGAAAGAACTGAATTTAAAG +
Preference number: 4 (lower is better)
Translates to: TSAQLTVACDCRHWSHSPKRFRK*KELNLK
Trigger: CTTTAAATTCAGTTCTTTCCACTTCCTGAACCGCTT...AGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACAAGCGGTTCAGGAAGTaGAAAGAACTGAATTTAAAG +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHKRFRK*KELNLK
Trigger: CTTTAAATTCAGTTCTTTCCACTTCCTGAACCGCTT...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp GATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGCTCGCAGTAATACTGTaGTCAGTGATGAAGCGAATT +
Preference number: 4 (lower is better)
Translates to: DCRHWSHSPMTFFLAFSLLAVIL*SVMKRI
Trigger: AATTCGCTTCATCACTGATCACAGTATTACTGCGAG...CAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTAACAGCTGTTTGAGATaGTGTAGACAGAATTTGACC +
Preference number: 4 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTNSCLR*CRQNLT
Trigger: GGTCAAATTCTGTCTACAGCATCTCAAACAGCTGTT...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATTGTCGTCACATACAGTaGCCCAGGAACCCTGGTAAA +
Preference number: 4 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYCRHIQ*PRNPGK
Trigger: TTTACCAGGGTTCCTGGGGCACTGTATGTGACGACA...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATAATGGGCTAGAAAATTaGCCAGAGGGTTGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYNGLEN*PEGWVR
Trigger: CCTGACCCAACCCTCTGGGCAATTTTCTAGCCCATT...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATCAGCCCCTTTCCAGCTaGAAATCTCTGAAGACCACA +
Preference number: 4 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYQPLSS*KSLKTT
Trigger: TGTGGTCTTCAGAGATTTGCAGCTGGAAAGGGGCTG...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp TTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACAATCTGTTCCTTCTGTaGTTTGTTCAGCTGTATAGG +
Preference number: 4 (lower is better)
Translates to: FHLFWESVLVEPMSGLFHNLFLL*FVQLYR
Trigger: CCTATACAGCTGAACAAAGCACAGAAGGAACAGATT...GTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACTGTGGTTTGTTCAGTTaGATAGAACACATCGTTATT +
Preference number: 4 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHCGLFS*IEHIVI
Trigger: AATAACGATGTGTTCTATCCAACTGAACAAACCACA...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTTGTCTGCTCTGCTGTaGTTTGTTCAGTTGGATAGA +
Preference number: 4 (lower is better)
Translates to: DCRHWSHSPMTFFLAFSLLSALL*FVQLDR
Trigger: TCTATCCAACTGAACAAACCACAGCAGAGCAGACAA...CAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAACTTGGTTGTCTGCTCTGCTGTaGTTTGTTCAGTTGGATAGA +
Preference number: 4 (lower is better)
Translates to: FSYDILPSLQSVDPGKTWLSALL*FVQLDR
Trigger: TCTATCCAACTGAACAAACCACAGCAGAGCAGACAA...CCAAGTTTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGAGAATCTGTTCCTATTaGTGTATAATCAGGAATGGT +
Preference number: 4 (lower is better)
Translates to: CQASGSHVFHLFWESVLVRICSY*CIIRNG
Trigger: ACCATTCCTGATTATACACCAATAGGAACAGATTCT...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp ATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTTCACAACTTAGTACTTATTCCCAGGGTAGAATaGGCTAGAAAATTGCCCAGA +
Preference number: 4 (lower is better)
Translates to: ICACGANVWVVSLHNLVLIPRVE*ARKLPR
Trigger: TCTGGGCAATTTTCTAGCCCATTCTACCCTGGGAAT...AAGTACTAAGTTGTGAAGTGAAACAACCCAGACATTGGCTCCACAAGCACAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR CCA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATCACACGGTAGTTGTTTaGGACCTCGATGTTCCACAG +
Preference number: 4 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYHTVVV*DLDVPQ
Trigger: CTGTGGAACATCGAGGTCCCAAACAACTACCGTGTG...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAGCGGTTCAGGAAGTaGAAAGAACTGAATTTAAAG +
Preference number: 4 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGKRFRK*KELNLK
Trigger: CTTTAAATTCAGTTCTTTCCACTTCCTGAACCGCTT...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATAGCCAGGTGTGGGACTaGTTGTTTGAGAATCTGAAC +
Preference number: 4 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYSQVWD*LFENLN
Trigger: GTTCAGATTCTCAAACAAGCAGTCCCACACCTGGCT...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR GCA 90 bp GATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGAATCTGTTCCTTCTGTaGTTTGTTCAGCTGTATAGG +
Preference number: 4 (lower is better)
Translates to: DCRHWSHSPMTFFLAFSLNLFLL*FVQLYR
Trigger: CCTATACAGCTGAACAAAGCACAGAAGGAACAGATT...CAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACAAGAATCTGTTCCTATTaGTGTATAATCAGGAATGGT +
Preference number: 4 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTRICSY*CIIRNG
Trigger: ACCATTCCTGATTATACACCAATAGGAACAGATTCT...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp TTGCAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCCACACACCGGAGCAATaGGAGAAGAATTATATTCAG +
Preference number: 4 (lower is better)
Translates to: LQYCKKKLTSTLQMEKVGHTPEQ*EKNYIQ
Trigger: CTGAATATAATTCTTCTCTCATTGCTCCGGTGTGTG...GCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTGCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCTGTGGTTTGTTCAGTTaGATAGAACACATCGTTATT +
Preference number: 4 (lower is better)
Translates to: DGESWLYMGKRESLARESCGLFS*IEHIVI
Trigger: AATAACGATGTGTTCTATCCAACTGAACAAACCACA...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR TCA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATCACACACCGGAGCAATaGGAGAAGAATTATATTCAG +
Preference number: 4 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYHTPEQ*EKNYIQ
Trigger: CTGAATATAATTCTTCTCTCATTGCTCCGGTGTGTG...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATTTGTCTGCTCTGCTGTaGTTTGTTCAGTTGGATAGA +
Preference number: 4 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYLSALL*FVQLDR
Trigger: TCTATCCAACTGAACAAACCACAGCAGAGCAGACAA...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CCA 90 bp TTGCCATCTCATTGTTCTTGGCTAAGCATTTGTGCTAAGGGAATCCTAGTCACCAGTGGTTTGTTCAGTTaGGTAGAACACATCATTATT +
Preference number: 4 (lower is better)
Translates to: LPSHCSWLSICAKGILVTSGLFS*VEHIII
Trigger: AATAATGATGTGTTCTACCCAACTGAACAAACCACT...GGTGACTAGGATTCCCTTAGCACAAATGCTTAGCCAAGAACAATGAGATGGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 90 bp GACTCCGCCAAAGATGGCTGCAGTAGGGTAGACGGCCTGGGAGCTTaGTGGCTTCTTCACATCCTCCACTGCCAAGTCGAGGCTCCTCTT +
Preference number: 5 (lower is better)
Translates to: DSAKDGCSRVDGLGA*WLLHILHCQVEAPL
Trigger: AAGAGGAGCCTCGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTACCCTACTGCAGCCATCTTTGGCGGAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GCCACAGCCAGGACCATGGCCAGGAAGACTCCGCCAAAGATGGCTGCAGTAGGGGTGTTCTGCAGCATCTaGCAGCTGACGTGGATATTC +
Preference number: 5 (lower is better)
Translates to: ATARTMARKTPPKMAAVGVFCSI*QLTWIF
Trigger: GAATATCCACGTCAGCTGCAAGATGCTGCAGAACAC...CCCTACTGCAGCCATCTTTGGCGGAGTCTTCCTGGCCATGGTCCTGGCTGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS GCA 90 bp AGGGTAGACGGCCTGGGAGCTTGCTGGCTTCTTCACATCCTCCACTaGCAAGTCGAGGCTCCTCTTTTCTTTGCTGGGGGATTGCAACTG +
Preference number: 5 (lower is better)
Translates to: RVDGLGACWLLHILH*QVEAPLFFAGGLQL
Trigger: CAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTACCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGAGACGGCCTGGGAGCTaGCTGGCTTCTTCACATCCT +
Preference number: 5 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLRRPGS*LASSHP
Trigger: AGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCT...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 90 bp ACCTGGACTGGGAGAAGTCACCTCAGGGAGTGCACAGATGACTCCTaGATCCTCAGAATGGCGACAGTTATGGACAAGCCAGCCAGGATG +
Preference number: 5 (lower is better)
Translates to: TWTGRSHLRECTDDS*ILRMATVMDKPARM
Trigger: CATCCTGGCTGGCTTGTCCATAACTGTCGCCATTCTGAGGATGCAGGAGTCATCTGTGCACTCCCTGAGGTGACTTCTCCCAGTCCAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 90 bp CTTGGCTTTGGGAGGACAATTCTGGGTCGAGGCTCCTCTTTTCTTTaGTGGGGGATTGCAACTGGATGGGTCCCAGGACAACATCCACCT +
Preference number: 5 (lower is better)
Translates to: LGFGRTILGRGSSFL*WGIATGWVPGQHPP
Trigger: AGGTGGATGTTGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACCCAGAATTGTCCTCCCAAAGCCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR CAA 90 bp CATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGTATGGGCTGGAAAATaGCCCAGAGGGTTGGGTCAG +
Preference number: 5 (lower is better)
Translates to: HGEKGKSSERKHGCHQCSVWAGK*PRGLGQ
Trigger: CTGACCCAACCCTCTGGGCAATTTTCCAGCCCATAC...TGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTTCTTTGCTGGGGGATaGCAACTGGATGGGTCCCAG +
Preference number: 5 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSFFAGG*QLDGSQ
Trigger: CTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAA...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS TCA 90 bp GTGTTATCTGGGGCTGACAGTGGTAGCTGGAGTTCCAACCAGGAATaGCAAGATCCCTGGCAGAATAGCCCATGGACTGAAGGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: VLSGADSGSWSSNQE*QDPWQNSPWTEGSS
Trigger: GGAGCTACCTTCAGTCCATGGGCTATTCTGCCAGGGATCTTGTCATTCCTGGTTGGAACTCCAGCTACCACTGTCAGCCCCAGATAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 90 bp ACCAGTTTACACTGCAGGTACACTGAGGGGAAGCGGTTCAGGAAGTaGAAAGAACTGAATTTAAAGCGGGAGACGCGTGGTGAGGGCGAG +
Preference number: 5 (lower is better)
Translates to: TSLHCRYTEGKRFRK*KELNLKRETRGEGE
Trigger: CTCGCCCTCACCACGCGTCTCCCGCTTTAAATTCAGTTCTTTCCACTTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGTAAACTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp CATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCATGTAGTCATCTGTGGTaGGGATTGGCACTGGAGGAG +
Preference number: 5 (lower is better)
Translates to: HGEKGKSSERKHGCHQCSCSHLW*GLALEE
Trigger: CTCCTCCAGTGCCAATCCCAACCACAGATGACTACA...TGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTAAATTGCCCAGAGGGTaGGGTCAGGAAACCTCCACA +
Preference number: 5 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSKLPRG*GQETST
Trigger: TGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATTT...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp CATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAAAATTGCCCAGAGGGTaGGGTCAGGAAACCTCCACA +
Preference number: 5 (lower is better)
Translates to: HGEKGKSSERKHGCHQCSKLPRG*GQETST
Trigger: TGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATTT...TGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGTCACACGGTAGTTGTTaGGGACCTCGATGTTCCACA +
Preference number: 5 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLSHGSC*GPRCST
Trigger: TGTGGAACATCGAGGTCCCAAACAACTACCGTGTGA...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGGTGTTCTGCAGCATCTaGCAGCTGACGTGGATATTC +
Preference number: 5 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLVFCSI*QLTWIF
Trigger: GAATATCCACGTCAGCTGCAAGATGCTGCAGAACAC...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAGGGCGAGGAGTAGGATaGGTAGGTATCATCCCGTAC +
Preference number: 5 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGGRGVG*VGIIPY
Trigger: GTACGGGATGATACCTACCAATCCTACTCCTCGCCC...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCTTCTTTGCTGGGGGATaGCAACTGGATGGGTCCCAG +
Preference number: 5 (lower is better)
Translates to: SVRLSCLPSFLGICACGAFFAGG*QLDGSQ
Trigger: CTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAA...GGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCAGACGGCCTGGGAGCTaGCTGGCTTCTTCACATCCT +
Preference number: 5 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSRRPGS*LASSHP
Trigger: AGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCT...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS TCA 90 bp GTTCAGGAAGTGGAAAGAACTGAATTTAAAGCGGGAGACGCGTGGTaGGGGCGAGGAGTAGGATTGGTAGGTATCATCCCGTACGCATCC +
Preference number: 5 (lower is better)
Translates to: VQEVERTEFKAGDAW*GRGVGLVGIIPYAS
Trigger: GGATGCGTACGGGATGATACCTACCAATCCTACTCCTCGCCCTCACCACGCGTCTCCCGCTTTAAATTCAGTTCTTTCCACTTCCTGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 90 bp TCTGGGGTAGTAGTAGTAGGCCACAGATCTGGCCTGGTTGTGCTCTaGATTTGGGCATCTGAACAGATGACTCCAGCATCCTCATGGTGT +
Preference number: 5 (lower is better)
Translates to: SGVVVVGHRSGLVVL*IWASEQMTPASSWC
Trigger: ACACCATGAGGATGCTGGAGTCATCTGTTCAGATGCCCAAATCCAGAGCACAACCAGGCCAGATCTGTGGCCTACTACTACTACCCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCAGGTGTGGGACTGCTaGATTGAGAAGCTGAACAGA +
Preference number: 5 (lower is better)
Translates to: MGKRESLARESMAATSAQQVWDC*IEKLNR
Trigger: TCTGTTCAGCTTCTCAATCAAGCAGTCCCACACCTG...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCGTATGGGCTGGAAAATaGCCCAGAGGGTTGGGTCAG +
Preference number: 5 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSVWAGK*PRGLGQ
Trigger: CTGACCCAACCCTCTGGGCAATTTTCCAGCCCATAC...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGTAGTCATCTGTGGTaGGGATTGGCACTGGAGGAG +
Preference number: 5 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQCSHLW*GLALEE
Trigger: CTCCTCCAGTGCCAATCCCAACCACAGATGACTACA...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GAGCTTGCTGGCTTCTTCACATCCTCCACTGCCAAGTCCCCGTTGTCTTCCCAAAACATCCACCTTTTCTaGGTAGGAGCCTACATCCCT +
Preference number: 5 (lower is better)
Translates to: ELAGFFTSSTAKSPLSSQNIHLF*VGAYIP
Trigger: AGGGATGTAGGCTCCTACCAAGAAAAGGTGGATGTT...TTGGGAAGACAACGGGGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR CAA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGTTCTTTGCTGGGGGATaGCAACTGGATGGGTCCCAG +
Preference number: 5 (lower is better)
Translates to: CQASGSHVFHLFWESVLVFFAGG*QLDGSQ
Trigger: CTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAA...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTACTCGGGCCTTGGCTTaGGGAGGACAATTCTGGGTC +
Preference number: 5 (lower is better)
Translates to: GSHVFHLFWESVLVEPMSTRALA*GGQFWV
Trigger: GACCCAGAATTGTCCTCCCAAAGCCAAGGCCCGAGT...AGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS TCA 90 bp GGTGAAAGAGCCCAGGGACCCATCACAAACCCGGGCGATGAGAGGTaGACTGTGGTGGGGGCCATCAAAAATCTCTATATAATCATAGCT +
Preference number: 5 (lower is better)
Translates to: GERAQGPITNPGDER*TVVGAIKNLYIIIA
Trigger: AGCTATGATTATATAGAGATTTTTGATGGCCCCCACCACAGTTCACCTCTCATCGCCCGGGTTTGTGATGGGTCCCTGGGCTCTTTCACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS TCA 90 bp GCCTACATCCCTCTTAGATCTCACTACGCAGCCTCTGTAGCACCGTaGGGAGGTATCATACGCTCGACATACTACCAGTTTACACTGCAG +
Preference number: 5 (lower is better)
Translates to: AYIPLRSHYAASVAP*GGIIRSTYYQFTLQ
Trigger: CTGCAGTGTAAACTGGTAGTATGTCGAGCGTATGATACCTCCTCACGGTGCTACAGAGGCTGCGTAGTGAGATCTAAGAGGGATGTAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS GCA 90 bp CACCGTGAGGAGGTATCATACGCTCGACATACTACCAGTTTACACTaGAGGTACACTGAGGGGAAGCGGTTCAGGAAGTGGAAAGAACTG +
Preference number: 5 (lower is better)
Translates to: HREEVSYARHTTSLH*RYTEGKRFRKWKEL
Trigger: CAGTTCTTTCCACTTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGTAAACTGGTAGTATGTCGAGCGTATGATACCTCCTCACGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 90 bp CCCTGGCAGAATAGCCCATGGACTGAAGGTAGCTCCTGCTCACGCTaGCTTGCATGTGATTTGACTGACAAAGGAGATTGGTGGTGTTAT +
Preference number: 5 (lower is better)
Translates to: PWQNSPWTEGSSCSR*LACDLTDKGDWWCY
Trigger: ATAACACCACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCTACCTTCAGTCCATGGGCTATTCTGCCAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCAGGTGTGGGACTGCTaGTTTGAGAATCTGAACAGA +
Preference number: 5 (lower is better)
Translates to: MGKRESLARESMAATSAQQVWDC*FENLNR
Trigger: TCTGTTCAGATTCTCAAACAAGCAGTCCCACACCTG...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGACTGCTCTACTGTGGTTaGGTCAGTTGGGTAGAACAC +
Preference number: 5 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGLLYCG*VSWVEH
Trigger: GTGTTCTACCCAACTGACCAAACCACAGTAGAGCAG...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR CAA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATGTATGGGCTGGAAAATaGCCCAGAGGGTTGGGTCAG +
Preference number: 5 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNVWAGK*PRGLGQ
Trigger: CTGACCCAACCCTCTGGGCAATTTTCCAGCCCATAC...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGCATTGTTTGGATAGTTaGAAGGGTAGTATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLHCLDS*KGSMGW
Trigger: CCAGCCCATACTACCCTTCAAACTATCCAAACAATG...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGGAGGTGAAAGAGCCATaGGAACCATCACAAACCCGA +
Preference number: 5 (lower is better)
Translates to: AIHGEKGKSSERKHGCHQEVKEP*EPSQTR
Trigger: TCGGGTTTGTGATGGTTCCAATGGCTCTTTCACCTC...CTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp CTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTCATCTGTGGTTGGGATaGGCACTGGAGGAGTTGTGC +
Preference number: 5 (lower is better)
Translates to: LMSSIFSGNLCLWSQCLGHLWLG*ALEELC
Trigger: GCACAACTCCTCCAGTGCCAATCCCAACCACAGATG...ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACTGTAGTCATCTGTGGTaGGGATTGGCACTGGAGGAG +
Preference number: 5 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHCSHLW*GLALEE
Trigger: CTCCTCCAGTGCCAATCCCAACCACAGATGACTACA...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACAAATTGCCCAGAGGGTaGGGTCAGGAAACCTCCACA +
Preference number: 5 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHKLPRG*GQETST
Trigger: TGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATTT...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCGTGATGTACATGGTGTaGACCCAGGTGTTCTGCAGC +
Preference number: 5 (lower is better)
Translates to: SWLYMGKRESLARESMAAVMYMV*TQVFCS
Trigger: GCTGCAGAACACCTGGGTCAACACCATGTACATCAC...GGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACGTGATGTACATGGTGTaGACCCAGGTGTTCTGCAGC +
Preference number: 5 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHVMYMV*TQVFCS
Trigger: GCTGCAGAACACCTGGGTCAACACCATGTACATCAC...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGATCTCCACTGTGTTGTaGGTGATGTACATGGTGTTG +
Preference number: 5 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLISTVL*VMYMVL
Trigger: CAACACCATGTACATCACCAACAACACAGTGGAGAT...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGGGGCGAGGAGTAGGATaGGTAGGTATCATCCCGTAC +
Preference number: 5 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGGRGVG*VGIIPY
Trigger: GTACGGGATGATACCTACCAATCCTACTCCTCGCCC...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATGGGCGAGGAGTAGGATaGGTAGGTATCATCCCGTAC +
Preference number: 5 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNGRGVG*VGIIPY
Trigger: GTACGGGATGATACCTACCAATCCTACTCCTCGCCC...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACAGGGCGAGGAGTAGGATaGGTAGGTATCATCCCGTAC +
Preference number: 5 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTGRGVG*VGIIPY
Trigger: GTACGGGATGATACCTACCAATCCTACTCCTCGCCC...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTAGACGGCCTGGGAGCTaGCTGGCTTCTTCACATCCT +
Preference number: 5 (lower is better)
Translates to: ESWLYMGKRESLARESMARRPGS*LASSHP
Trigger: AGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCT...AGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACGCCACAGCCGAGCTGTaGACAGACGACATCTGCATC +
Preference number: 5 (lower is better)
Translates to: FHLFWESVLVEPMSGLFHATAEL*TDDICI
Trigger: GATGCAGATGTCGTCTGTCAACAGCTCGGCTGTGGC...GTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS TCA 90 bp CACACTGCCATCTGTGATGAAGACTACGGACATGAAGTTTCCGGTTaGGGTGAAAGATCCATTGGACCCATCACACACCCGAGCAATGAG +
Preference number: 5 (lower is better)
Translates to: HTAICDEDYGHEVSG*GERSIGPITHPSNE
Trigger: CTCATTGCTCGGGTGTGTGATGGGTCCAATGGATCTTTCACCTCAACCGGAAACTTCATGTCCGTAGTCTTCATCACAGATGGCAGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS TCA 90 bp CACACTGCCATCCGTGATGAAGACTACGGACATGAAGTTTCCGGTTaGGGTGAAAGATCCATTGAACCCATCACACACCGGAGCAATGAG +
Preference number: 5 (lower is better)
Translates to: HTAIRDEDYGHEVSG*GERSIEPITHRSNE
Trigger: CTCATTGCTCCGGTGTGTGATGGGTTCAATGGATCTTTCACCTCAACCGGAAACTTCATGTCCGTAGTCTTCATCACGGATGGCAGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 90 bp CGGCCTGAAGGTACAAATTCTGGTCCAGATCCACGTAGTATGGGCTaGTGGTCACTGGAAACAAGAAGGAGGAGGATGTGTAGAAGGAAA +
Preference number: 5 (lower is better)
Translates to: RPEGTNSGPDPRSMG*WSLETRRRRMCRRK
Trigger: TTTCCTTCTACACATCCTCCTCCTTCTTGTTTCCAGTGACCAGCAGCCCATACTACGTGGATCTGGACCAGAATTTGTACCTTCAGGCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 90 bp TCCACAAGTATAGTTTACATAGGAAGGACTTGTAGTCCACCAACCTaGACTGGGAGAAGTCACCTCAGGGAGTGCACAGATGACTCCTGC +
Preference number: 5 (lower is better)
Translates to: STSIVYIGRTCSPPT*TGRSHLRECTDDSC
Trigger: GCAGGAGTCATCTGTGCACTCCCTGAGGTGACTTCTCCCAGTCCAGGTTGGTGGACTACAAGTCCTTCCTATGTAAACTATACTTGTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGGTGTGGGACTGCTaGATTGAGAAGCTGAACAGA +
Preference number: 5 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHQVWDC*IEKLNR
Trigger: TCTGTTCAGCTTCTCAATCAAGCAGTCCCACACCTG...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp CTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTCTGCTCTGCTGTGGTTaGGTCAGTTGGGTAGAACAC +
Preference number: 5 (lower is better)
Translates to: LMSSIFSGNLCLWSQCLGLLCCG*VSWVEH
Trigger: GTGTTCTACCCAACTGACCAAACCACAGCAGAGCAG...ACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACCATCTGTGGTTGGGATaGGCACTGGAGGAGTTGTGC +
Preference number: 5 (lower is better)
Translates to: FHLFWESVLVEPMSGLFHHLWLG*ALEELC
Trigger: GCACAACTCCTCCAGTGCCAATCCCAACCACAGATG...GTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCCTGCGAATTGACATGAAGTaGGATGTTGAGGTGAAAGAG +
Preference number: 5 (lower is better)
Translates to: KSSERKHGCHQCSAHSCLRIDMK*DVEVKE
Trigger: CTCTTTCACCTCAACATCCAACTTCATGTCAATTCG...CAGGCAACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGTTCTGCAGCATCTaGCAGCTGACGTGGATATTC +
Preference number: 5 (lower is better)
Translates to: VSGCQASGSHVFHLFWESVFCSI*QLTWIF
Trigger: GAATATCCACGTCAGCTGCAAGATGCTGCAGAACAC...AGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTATCTCCACTGTGTTGTaGGTGATGTACATGGTGTTG +
Preference number: 5 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSISTVL*VMYMVL
Trigger: CAACACCATGTACATCACCAACAACACAGTGGAGAT...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTTTCTTTGCTGGGGGATaGCAACTGGATGGGTCCCAG +
Preference number: 5 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTFFAGG*QLDGSQ
Trigger: CTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAA...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS TCA 90 bp CACACTGCCATCTGTGATGAAGACTACGGACATGAAGTTTCCGGTTaGGGTGAAAGAGCCATTGGAACCATCACAAACCCGAGCAATGAG +
Preference number: 5 (lower is better)
Translates to: HTAICDEDYGHEVSG*GERAIGTITNPSNE
Trigger: CTCATTGCTCGGGTTTGTGATGGTTCCAATGGCTCTTTCACCTCAACCGGAAACTTCATGTCCGTAGTCTTCATCACAGATGGCAGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS TCA 90 bp AGAATCTGTTCCTTCTGTGCTTTGTTCAGCTGTATAGGACACTTCTaGGCATACAACTCCGGCGTCTTCCCTGTGGCCACAGTCATGGTT +
Preference number: 5 (lower is better)
Translates to: RICSFCALFSCIGHF*AYNSGVFPVATVMV
Trigger: AACCATGACTGTGGCCACAGGGAAGACGCCGGAGTTGTATGCTCAGAAGTGTCCTATACAGCTGAACAAAGCACAGAAGGAACAGATTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS GCA 90 bp TCCACTGTGTTGTTGGTGATGTACATGGTGTTGACCCAGGTGTTCTaGAGCATCTTGCAGCTGACGTGGATATTCAGGTCCTTTCTCCTT +
Preference number: 5 (lower is better)
Translates to: STVLLVMYMVLTQVF*SILQLTWIFRSFLL
Trigger: AAGGAGAAAGGACCTGAATATCCACGTCAGCTGCAAGATGCTGCAGAACACCTGGGTCAACACCATGTACATCACCAACAACACAGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 90 bp TGCTCACGCTGGCTTGCATGTGATTTGACTGACAAAGGAGATTGGTaGTGTTATTGTCAAAGTCGGAGTAGTAGTGAGCCTGGAACCCTC +
Preference number: 5 (lower is better)
Translates to: CSRWLACDLTDKGDW*CYCQSRSSSEPGTL
Trigger: GAGGGTTCCAGGCTCACTACTACTCCGACTTTGACAATAACACCACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCCAGCGTGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 90 bp TCCTGCTCACGCTGGCTTGCATGTGATTTGACTGACAAAGGAGATTaGTGGTGTTATTGTCAAAGTCGGAGTAGTAGTGAGCCTGGAACC +
Preference number: 5 (lower is better)
Translates to: SCSRWLACDLTDKGD*WCYCQSRSSSEPGT
Trigger: GGTTCCAGGCTCACTACTACTCCGACTTTGACAATAACACCACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCCAGCGTGAGCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 90 bp GATTTCGGCCTGAAGGTACAAATTCTGGTCCAGATCCACGTAGTATaGGCTGCTGGTCACTGGAAACAAGAAGGAGGAGGATGTGTAGAA +
Preference number: 5 (lower is better)
Translates to: DFGLKVQILVQIHVV*AAGHWKQEGGGCVE
Trigger: TTCTACACATCCTCCTCCTTCTTGTTTCCAGTGACCAGCAGCCCATACTACGTGGATCTGGACCAGAATTTGTACCTTCAGGCCGAAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 90 bp TCCTCCATTCTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATTaGTGTATAATCAGGAACGGTTGTCTGCTCTGCTGTGGTTTGGTC +
Preference number: 5 (lower is better)
Translates to: SSILQPHGQTVFCSY*CIIRNGCLLCCGLV
Trigger: GACCAAACCACAGCAGAGCAGACAACCGTTCCTGATTATACACCAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAGAATGGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAGGTGTGGGACTGCTaGTTTGAGAATCTGAACAGA +
Preference number: 5 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSQVWDC*FENLNR
Trigger: TCTGTTCAGATTCTCAAACAAGCAGTCCCACACCTG...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCAGGTGTGGGACTGCTaGATTGAGAAGCTGAACAGA +
Preference number: 5 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNQVWDC*IEKLNR
Trigger: TCTGTTCAGCTTCTCAATCAAGCAGTCCCACACCTG...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGACATTGTTTGGATAGTTaGAAGGGTAGTATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGHCLDS*KGSMGW
Trigger: CCAGCCCATACTACCCTTCAAACTATCCAAACAATG...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGAGGTGAAAGAGCCATaGGAACCATCACAAACCCGA +
Preference number: 5 (lower is better)
Translates to: GSHVFHLFWESVLVEPMSEVKEP*EPSQTR
Trigger: TCGGGTTTGTGATGGTTCCAATGGCTCTTTCACCTC...AGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAACATCTGTGGTTGGGATaGGCACTGGAGGAGTTGTGC +
Preference number: 5 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKHLWLG*ALEELC
Trigger: GCACAACTCCTCCAGTGCCAATCCCAACCACAGATG...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTAAATTGCCCAGAGGGTaGGGTCAGGAAACCTCCACA +
Preference number: 5 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTKLPRG*GQETST
Trigger: TGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATTT...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTCGAATTGACATGAAGTaGGATGTTGAGGTGAAAGAG +
Preference number: 5 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSRIDMK*DVEVKE
Trigger: CTCTTTCACCTCAACATCCAACTTCATGTCAATTCG...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCGTGATGTACATGGTGTaGACCCAGGTGTTCTGCAGC +
Preference number: 5 (lower is better)
Translates to: DGESWLYMGKRESLARESVMYMV*TQVFCS
Trigger: GCTGCAGAACACCTGGGTCAACACCATGTACATCAC...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCGTGATGTACATGGTGTaGACCCAGGTGTTCTGCAGC +
Preference number: 5 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFVMYMV*TQVFCS
Trigger: GCTGCAGAACACCTGGGTCAACACCATGTACATCAC...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACAAAGATGAGAAGTCATaGGGATGTGGCGAAGCCACA +
Preference number: 5 (lower is better)
Translates to: LAIHGEKGKSSERKHGCHKDEKS*GCGEAT
Trigger: TGTGGCTTCGCCACATCCCAATGACTTCTCATCTTT...GTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTAACATCCACCTTTTCTaGGTAGGAGCCTACATCCCT +
Preference number: 5 (lower is better)
Translates to: VSGCQASGSHVFHLFWESNIHLF*VGAYIP
Trigger: AGGGATGTAGGCTCCTACCAAGAAAAGGTGGATGTT...AGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS TCA 90 bp GGGGACCAATATTTCCCAGGAACATCTGGCATTGTTAGGATAGTTTaGAGGGTAGTATGGGCTGGAAAATTGTCCAGAGGGTTGGGTCAG +
Preference number: 5 (lower is better)
Translates to: GDQYFPGTSGIVRIV*RVVWAGKLSRGLGQ
Trigger: CTGACCCAACCCTCTGGACAATTTTCCAGCCCATACTACCCTTCAAACTATCCTAACAATGCCAGATGTTCCTGGGAAATATTGGTCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS TCA 90 bp CATGGACTGAAGGTAGCTCCTGCTCACGCTGGCTTGCATGTGATTTaGCTGACAAAGGAGATTGGTGGTGTTATTGTCAAAGTCGGAGTA +
Preference number: 5 (lower is better)
Translates to: HGLKVAPAHAGLHVI*LTKEIGGVIVKVGV
Trigger: TACTCCGACTTTGACAATAACACCACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCTACCTTCAGTCCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS TCA 90 bp AGGAGTAGGATTGGTAGGTATCATCCCGTACGCATCCACTCCGGATaGGATCATATGTCAAAGATGAGAAGTCATTGGGATGTGGCGAAG +
Preference number: 5 (lower is better)
Translates to: RSRIGRYHPVRIHSG*DHMSKMRSHWDVAK
Trigger: CTTCGCCACATCCCAATGACTTCTCATCTTTGACATATGATCTCATCCGGAGTGGATGCGTACGGGATGATACCTACCAATCCTACTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 90 bp TCCTCCATTCTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATTaGTGTATAATCAGGAACGGTTGTCTGCTCTACTGTGGTTTGGTC +
Preference number: 5 (lower is better)
Translates to: SSILQPHGQTVFCSY*CIIRNGCLLYCGLV
Trigger: GACCAAACCACAGTAGAGCAGACAACCGTTCCTGATTATACACCAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAGAATGGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS CCA 90 bp GTTCCACAGACATCTGGCATTATTAGGATAATTCCCAGGGTAGAATaGGCTAGAAAATTGCCCAGAGGGTTGGGTCAGGAAACCTCCACA +
Preference number: 5 (lower is better)
Translates to: VPQTSGIIRIIPRVE*ARKLPRGLGQETST
Trigger: TGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATTTTCTAGCCCATTCTACCCTGGGAATTATCCTAATAATGCCAGATGTCTGTGGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGCTCACAGTTGCTGTAGACAGAATTaGACCCCACAAAAGACATAT +
Preference number: 5 (lower is better)
Translates to: KGKSSERKHGCHQCSAHSCCRQN*TPQKTY
Trigger: ATATGTCTTTTGTGGGGTCAAATTCTGTCTACAGCA...ACTGTGAGCTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp ATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCATGGCTGCCACCAGTGCTCAGTGCTGTAGACAGAATTaGACCCCACAAAAGACATAT +
Preference number: 5 (lower is better)
Translates to: MGKRESLARESMAATSAQCCRQN*TPQKTY
Trigger: ATATGTCTTTTGTGGGGTCAAATTCTGTCTACAGCA...CTGAGCACTGGTGGCAGCCATGCTTTCTCTCGCTAGACTTTCCCTTTTCCCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTTGTGGGAACAGCTGTTaGAGATGCTGTAGACAGAAT +
Preference number: 5 (lower is better)
Translates to: VSGCQASGSHVFHLFWESCGNSC*RCCRQN
Trigger: ATTCTGTCTACAGCATCTCAAACAGCTGTTCCCACA...AGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACAAGAACACATCGTTATTaGTCCCTCCTGGATTCCACC +
Preference number: 5 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTRTHRY*SLLDST
Trigger: GGTGGAATCCAGGAGGGACAAATAACGATGTGTTCT...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp ATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATAGAACACATCGTTATTaGTCCCTCCTGGATTCCACC +
Preference number: 5 (lower is better)
Translates to: MYLGAKRQALMSSIFSGNRTHRY*SLLDST
Trigger: GGTGGAATCCAGGAGGGACAAATAACGATGTGTTCT...ATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGAGAACACATCATTATTaGTCCCTCCTGGATTCCACC +
Preference number: 5 (lower is better)
Translates to: CQASGSHVFHLFWESVLVRTHHY*SLLDST
Trigger: GGTGGAATCCAGGAGGGACAAATAATGATGTGTTCT...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAACTGCTCTGCTGTGGTTaGGTCAGTTGGGTAGAACAC +
Preference number: 5 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKLLCCG*VSWVEH
Trigger: GTGTTCTACCCAACTGACCAAACCACAGCAGAGCAG...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCTCACACGGTAGTTGTTaGGGACCTCGATGTTCCACA +
Preference number: 5 (lower is better)
Translates to: DGESWLYMGKRESLARESSHGSC*GPRCST
Trigger: TGTGGAACATCGAGGTCCCAAACAACTACCGTGTGA...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp CTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAACATCCACCTTTTCTaGGTAGGAGCCTACATCCCT +
Preference number: 5 (lower is better)
Translates to: LVSFSYDILPSLQSVDPGNIHLF*VGAYIP
Trigger: AGGGATGTAGGCTCCTACCAAGAAAAGGTGGATGTT...CCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS TCA 90 bp GGTATCATACGCTCGACATACTACCAGTTTACACTGCAGGTACACTaGGGGGAAGCGGTTCAGGAAGTGGAAAGAACTGAATTTAAAGCG +
Preference number: 5 (lower is better)
Translates to: GIIRSTYYQFTLQVH*GEAVQEVERTEFKA
Trigger: CGCTTTAAATTCAGTTCTTTCCACTTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGTAAACTGGTAGTATGTCGAGCGTATGATACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATGTGGGAACAGCTGTTaGAGATGCTGTAGACAGAAT +
Preference number: 5 (lower is better)
Translates to: AQLTVACDCRHWSHSPMTCGNSC*RCCRQN
Trigger: ATTCTGTCTACAGCATCTCAAACAGCTGTTCCCACA...TGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GATGGAGAAAGTTGGCTATACATGGGGAAAAGGGAAAGTCTAGCGAGAGAAAGCCAGGTGTGGGACTGCTaGTTTGAGAATCTGAACAGA +
Preference number: 5 (lower is better)
Translates to: DGESWLYMGKRESLARESQVWDC*FENLNR
Trigger: TCTGTTCAGATTCTCAAACAAGCAGTCCCACACCTG...GCTTTCTCTCGCTAGACTTTCCCTTTTCCCCATGTATAGCCAACTTTCTCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGAACACATCGTTATTaGTCCCTCCTGGATTCCACC +
Preference number: 5 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFRTHRY*SLLDST
Trigger: GGTGGAATCCAGGAGGGACAAATAACGATGTGTTCT...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp CCATGTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGATGTTTTCTGTTCCTATaGGTGTATAATCAGGAACGG +
Preference number: 5 (lower is better)
Translates to: PCIWVPSVRLSCLPSFLGCFLFL*VYNQER
Trigger: CCGTTCCTGATTATACACCAATAGGAACAGAAAACA...TCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATACATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAATCACACGGTAGTTGTTaGGGACCTCGATGTTCCACA +
Preference number: 5 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKSHGSC*GPRCST
Trigger: TGTGGAACATCGAGGTCCCAAACAACTACCGTGTGA...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTGCCATCTCATTGTTCTTGGCTAAGCATTTGTGCTAAGGGAATCCTAGTCACCTCACACGGTAGTTGTTaGGGACCTCGATGTTCCACA +
Preference number: 5 (lower is better)
Translates to: LPSHCSWLSICAKGILVTSHGSC*GPRCST
Trigger: TGTGGAACATCGAGGTCCCAAACAACTACCGTGTGA...GGTGACTAGGATTCCCTTAGCACAAATGCTTAGCCAAGAACAATGAGATGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACAAAGATGAGAAGTCATaGGGATGTGGCGAAGCCACA +
Preference number: 5 (lower is better)
Translates to: FHLFWESVLVEPMSGLFHKDEKS*GCGEAT
Trigger: TGTGGCTTCGCCACATCCCAATGACTTCTCATCTTT...GTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGTGCTGTAGACAGAATTaGACCCCACAAAAGACATAT +
Preference number: 5 (lower is better)
Translates to: CQASGSHVFHLFWESVLVCCRQN*TPQKTY
Trigger: ATATGTCTTTTGTGGGGTCAAATTCTGTCTACAGCA...CACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGAACACATCATTATTaGTCCCTCCTGGATTCCACC +
Preference number: 5 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFRTHHY*SLLDST
Trigger: GGTGGAATCCAGGAGGGACAAATAATGATGTGTTCT...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAGTGGTTTGTTCAGTaGGGTAGAACACATCATTAT +
Preference number: 5 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSQWFVQ*GRTHHY
Trigger: ATAATGATGTGTTCTACCCAACTGAACAAACCACTG...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GTATCTGGGTGCCAAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTCAGTGGTTTGTTCAGTaGGGTAGAACACATCATTAT +
Preference number: 5 (lower is better)
Translates to: VSGCQASGSHVFHLFWESQWFVQ*GRTHHY
Trigger: ATAATGATGTGTTCTACCCAACTGAACAAACCACTG...AGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTTGGCACCCAGATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTGCAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCCTGCTCTGCTGTGGTTaGGTCAGTTGGGTAGAACAC +
Preference number: 5 (lower is better)
Translates to: LQYCKKKLTSTLQMEKVGLLCCG*VSWVEH
Trigger: GTGTTCTACCCAACTGACCAAACCACAGCAGAGCAG...GCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp ACCAGTGCTCAGCTCACAGTTGCCTGTGATTGTAGACACTGGTCTCATTCTCCTTGTTTTCTGTTCCTATaGGTGTATAATCAGGAACGG +
Preference number: 5 (lower is better)
Translates to: TSAQLTVACDCRHWSHSPCFLFL*VYNQER
Trigger: CCGTTCCTGATTATACACCAATAGGAACAGAAAACA...AGGAGAATGAGACCAGTGTCTACAATCACAGGCAACTGTGAGCTGAGCACTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTCGAATTGACATGAAGTaGGATGTTGAGGTGAAAGAG +
Preference number: 5 (lower is better)
Translates to: GSHVFHLFWESVLVEPMSRIDMK*DVEVKE
Trigger: CTCTTTCACCTCAACATCCAACTTCATGTCAATTCG...AGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTATCTCCACTGTGTTGTaGGTGATGTACATGGTGTTG +
Preference number: 5 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTISTVL*VMYMVL
Trigger: CAACACCATGTACATCACCAACAACACAGTGGAGAT...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAACTTGGAAAGATGAGAAGTCATaGGGATGTGGCGAAGCCACA +
Preference number: 5 (lower is better)
Translates to: FSYDILPSLQSVDPGKTWKDEKS*GCGEAT
Trigger: TGTGGCTTCGCCACATCCCAATGACTTCTCATCTTT...CCAAGTTTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTGTTCCTTCTGTGCTTaGTTCAGCTGTATAGGACAC +
Preference number: 5 (lower is better)
Translates to: FHLFWESVLVEPMSGLFHCSFCA*FSCIGH
Trigger: GTGTCCTATACAGCTGAACAAAGCACAGAAGGAACA...GTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS TCA 90 bp AAGAATCATTTCCAGTTATGTTTGGGAATGATGGAGGACTTGTGCTaGCTGTGGAGTAGTAGTAAGCCTGAAACCCTCTCCTTGTCACAC +
Preference number: 5 (lower is better)
Translates to: KNHFQLCLGMMEDLC*LWSSSKPETLSLSH
Trigger: GTGTGACAAGGAGAGGGTTTCAGGCTTACTACTACTCCACAGTCAGCACAAGTCCTCCATCATTCCCAAACATAACTGGAAATGATTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CCA 90 bp TTCCAGCTGCAAATCTCTGAAGACCACAGTCACACGGTAGTTGTTTaGGACCTCGATGTTCCACAGACATCTGGCATTATTAGGATAATT +
Preference number: 5 (lower is better)
Translates to: FQLQISEDHSHTVVV*DLDVPQTSGIIRII
Trigger: AATTATCCTAATAATGCCAGATGTCTGTGGAACATCGAGGTCCCAAACAACTACCGTGTGACTGTGGTCTTCAGAGATTTGCAGCTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAAGAACACATCATTATTaGTCCCTCCTGGATTCCACC +
Preference number: 5 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKRTHHY*SLLDST
Trigger: GGTGGAATCCAGGAGGGACAAATAATGATGTGTTCT...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp AAGCGTCAGGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCTGTTTTCTGTTCCTATaGTTGTATAATCAGGAACGG +
Preference number: 5 (lower is better)
Translates to: KRQALMSSIFSGNLCLWSCFLFL*LYNQER
Trigger: CCGTTCCTGATTATACAACAATAGGAACAGAAAACA...GCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCCTGACGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR CAA 90 bp CTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGTGTTTTCTGTTCCTATaGGTGTATAATCAGGAACGG +
Preference number: 5 (lower is better)
Translates to: LSCLPSFLGICACGANVWCFLFL*VYNQER
Trigger: CCGTTCCTGATTATACACCAATAGGAACAGAAAACA...CCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTTCACCGAATTGACATGAAGTaGGATGTTGAGGTGAAAGAG +
Preference number: 5 (lower is better)
Translates to: SFLGICACGANVWVVSLHRIDMK*DVEVKE
Trigger: CTCTTTCACCTCAACATCCAACTTCATGTCAATTCG...GTGAAGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS-3UTR CAA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAAATCTCCACTGTGTTGTaGGTGATGTACATGGTGTTG +
Preference number: 5 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKISTVL*VMYMVL
Trigger: CAACACCATGTACATCACCAACAACACAGTGGAGAT...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGTAGATCCTGGGAAATGTTCCTTCTGTGCTTaGTTCAGCTGTATAGGACAC +
Preference number: 5 (lower is better)
Translates to: VSFSYDILPSLQSVDPGKCSFCA*FSCIGH
Trigger: GTGTCCTATACAGCTGAACAAAGCACAGAAGGAACA...TTTCCCAGGATCTACAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CCA 90 bp CTGTTCCTATTGGTGTATAATCAGGAATGGTTGTCTGCTCTGCTGTaGTTTGTTCAGTTGGATAGAACACATCGTTATTTGTCCCTCCTG +
Preference number: 5 (lower is better)
Translates to: LFLLVYNQEWLSALL*FVQLDRTHRYLSLL
Trigger: CAGGAGGGACAAATAACGATGTGTTCTATCCAACTGAACAAACCACAGCAGAGCAGACAACCATTCCTGATTATACACCAATAGGAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CCA 90 bp TCACGGCCAAACCAGAATCTGTTCCTATTGGTGTATAATCAGGAATaGTTGTCTGCTCTGCTGTGGTTTGTTCAGTTGGATAGAACACAT +
Preference number: 5 (lower is better)
Translates to: SRPNQNLFLLVYNQE*LSALLWFVQLDRTH
Trigger: ATGTGTTCTATCCAACTGAACAAACCACAGCAGAGCAGACAACCATTCCTGATTATACACCAATAGGAACAGATTCTGGTTTGGCCGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GCCTGTGATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCCTGTGGTTTGTTCAGTaGGATAGAACACATCGTTAT +
Preference number: 5 (lower is better)
Translates to: ACDCRHWSHSPMTFFLAFLWFVQ*DRTHRY
Trigger: ATAACGATGTGTTCTATCCAACTGAACAAACCACAG...GAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATCACAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTGGGTTGTTTCACTCAGTGGTTTGTTCAGTaGGGTAGAACACATCATTAT +
Preference number: 5 (lower is better)
Translates to: SIFSGNLCLWSQCLGCFTQWFVQ*GRTHHY
Trigger: ATAATGATGTGTTCTACCCAACTGAACAAACCACTG...AGTGAAACAACCCAGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GGCTCTCATGTCTTCCATCTTTTCTGGGAATCTGTGCTTGTGGAGCCAATGTCTTGTTTTCTGTTCCTATaGTTGTATAATCAGGAACGG +
Preference number: 5 (lower is better)
Translates to: GSHVFHLFWESVLVEPMSCFLFL*LYNQER
Trigger: CCGTTCCTGATTATACAACAATAGGAACAGAAAACA...AGACATTGGCTCCACAAGCACAGATTCCCAGAAAAGATGGAAGACATGAGAGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR CAA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATCTGCTCTACTGTGGTTaGGTCAGTTGGGTAGAACAC +
Preference number: 5 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYLLYCG*VSWVEH
Trigger: GTGTTCTACCCAACTGACCAAACCACAGTAGAGCAG...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS-3UTR CAA 90 bp CAGTATTGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATGAGGTGAAAGAGCCATaGGAACCATCACAAACCCGA +
Preference number: 5 (lower is better)
Translates to: QYCKKKLTSTLQMEKVGYEVKEP*EPSQTR
Trigger: TCGGGTTTGTGATGGTTCCAATGGCTCTTTCACCTC...ATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACAATACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp GATTGTAGACACTGGTCTCATTCTCCTATGACATTCTTCCTAGCCTTCAGTCTGCTGTGGTTTGTTCAGTaGGATAGAACACATCGTTAT +
Preference number: 5 (lower is better)
Translates to: DCRHWSHSPMTFFLAFSLLWFVQ*DRTHRY
Trigger: ATAACGATGTGTTCTATCCAACTGAACAAACCACAG...CAGACTGAAGGCTAGGAAGAATGTCATAGGAGAATGAGACCAGTGTCTACAATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TTGCCATCTCATTGTTCTTGGCTAAGCATTTGTGCTAAGGGAATCCTAGTCACCCTGTGGTTTGTTCAGTaGGATAGAACACATCGTTAT +
Preference number: 5 (lower is better)
Translates to: LPSHCSWLSICAKGILVTLWFVQ*DRTHRY
Trigger: ATAACGATGTGTTCTATCCAACTGAACAAACCACAG...GGTGACTAGGATTCCCTTAGCACAAATGCTTAGCCAAGAACAATGAGATGGCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS-3UTR CAA 90 bp TGTAAGAAAAAGCTGACATCGACACTACAGATGGAGAAAGTTGGCTATACATGGCATTGTTTGGATAGTTaGAAGGGTAGTATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: CKKKLTSTLQMEKVGYTWHCLDS*KGSMGW
Trigger: CCAGCCCATACTACCCTTCAAACTATCCAAACAATG...CCATGTATAGCCAACTTTCTCCATCTGTAGTGTCGATGTCAGCTTTTTCTTACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CCA 72 bp GATGGCTGCAGTAGGGTAGACGGCCTGGGAGCTTGCTaGCTTCTTCACATCCTCCACTGCCAAGTCGAGGCT +
Preference number: 6 (lower is better)
Translates to: DGCSRVDGLGAC*LLHILHCQVEA
Trigger: AGCCTCGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTACCCTACTGCAGCCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 72 bp GGCCTGGGAGCTTGCTGGCTTCTTCACATCCTCCACTaGCAAGTCGAGGCTCCTCTTTTCTTTGCTGGGGGA +
Preference number: 6 (lower is better)
Translates to: GLGACWLLHILH*QVEAPLFFAGG
Trigger: TCCCCCAGCAAAGAAAAGAGGAGCCTCGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 72 bp AAAGATGGCTGCAGTAGGGTAGACGGCCTGGGAGCTTaGTGGCTTCTTCACATCCTCCACTGCCAAGTCGAG +
Preference number: 6 (lower is better)
Translates to: KDGCSRVDGLGA*WLLHILHCQVE
Trigger: CTCGACTTGGCAGTGGAGGATGTGAAGAAGCCAGCAAGCTCCCAGGCCGTCTACCCTACTGCAGCCATCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 90 bp CCTTGGCTTTGGGAGGACAATTCTGGGTCGAGGCTCCTCTTTTCTTaGCTGGGGGATTGCAACTGGATGGGTCCCAGGACAACATCCACC +
Preference number: 6 (lower is better)
Translates to: PWLWEDNSGSRLLFS*LGDCNWMGPRTTST
Trigger: GGTGGATGTTGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACCCAGAATTGTCCTCCCAAAGCCAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS TCA 72 bp AGTCAAAGCTGCAGCCTCCTTCAAGCTGCACATCTGTaGAGGCCACTGTCACACGGTTCATGCTGGGGACCA +
Preference number: 6 (lower is better)
Translates to: SQSCSLLQAAHL*RPLSHGSCWGP
Trigger: TGGTCCCCAGCATGAACCGTGTGACAGTGGCCTTCACAGATGTGCAGCTTGAAGGAGGCTGCAGCTTTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 72 bp CATCCTCCACTGCCAAGTCGAGGCTCCTCTTTTCTTTaGTGGGGGATTGCAACTGGATGGGTCCCAGGACAA +
Preference number: 6 (lower is better)
Translates to: HPPLPSRGSSFL*WGIATGWVPGQ
Trigger: TTGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACTTGGCAGTGGAGGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 72 bp GGGAGGACAATTCTGGGTCGAGGCTCCTCTTTTCTTTaGTGGGGGATTGCAACTGGATGGGTCCCAGGACAA +
Preference number: 6 (lower is better)
Translates to: GRTILGRGSSFL*WGIATGWVPGQ
Trigger: TTGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACCCAGAATTGTCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS CCA 72 bp CCTCCACTGCCAAGTCGAGGCTCCTCTTTTCTTTGCTaGGGGATTGCAACTGGATGGGTCCCAGGACAACAT +
Preference number: 6 (lower is better)
Translates to: PPLPSRGSSFLC*GIATGWVPGQH
Trigger: ATGTTGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACTTGGCAGTGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 72 bp ACATCCTCCACTGCCAAGTCGAGGCTCCTCTTTTCTTaGCTGGGGGATTGCAACTGGATGGGTCCCAGGACA +
Preference number: 6 (lower is better)
Translates to: TSSTAKSRLLFS*LGDCNWMGPRT
Trigger: TGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACTTGGCAGTGGAGGATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 72 bp TGGGAGGACAATTCTGGGTCGAGGCTCCTCTTTTCTTaGCTGGGGGATTGCAACTGGATGGGTCCCAGGACA +
Preference number: 6 (lower is better)
Translates to: WEDNSGSRLLFS*LGDCNWMGPRT
Trigger: TGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACCCAGAATTGTCCTCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS TCA 72 bp GGGGCTGACAGTGGTAGCTGGAGTTCCAACCAGGAATaGCAAGATCCCTGGCAGAATAGCCCATGGACTGAA +
Preference number: 6 (lower is better)
Translates to: GADSGSWSSNQE*QDPWQNSPWTE
Trigger: TTCAGTCCATGGGCTATTCTGCCAGGGATCTTGTCATTCCTGGTTGGAACTCCAGCTACCACTGTCAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS GCA 72 bp GGGAGAAGTCACCTCAGGGAGTGCACAGATGACTCCTaGATCCTCAGAATGGCGACAGTTATGGACAAGCCA +
Preference number: 6 (lower is better)
Translates to: GRSHLRECTDDS*ILRMATVMDKP
Trigger: TGGCTTGTCCATAACTGTCGCCATTCTGAGGATGCAGGAGTCATCTGTGCACTCCCTGAGGTGACTTCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 72 bp GCCAAGTCGAGGCTCCTCTTTTCTTTGCTGGGGGATTaGAACTGGATGGGTCCCAGGACAACATCCACCTTT +
Preference number: 6 (lower is better)
Translates to: AKSRLLFSLLGD*NWMGPRTTSTF
Trigger: AAAGGTGGATGTTGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACTTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 72 bp TCTGGGTCGAGGCTCCTCTTTTCTTTGCTGGGGGATTaGAACTGGATGGGTCCCAGGACAACATCCACCTTT +
Preference number: 6 (lower is better)
Translates to: SGSRLLFSLLGD*NWMGPRTTSTF
Trigger: AAAGGTGGATGTTGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACCCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS CCA 72 bp GTAGGCCACAGATCTGGCCTGGTTGTGCTCTGGATTTaGGCATCTGAACAGATGACTCCAGCATCCTCATGG +
Preference number: 6 (lower is better)
Translates to: VGHRSGLVVLWI*ASEQMTPASSW
Trigger: CCATGAGGATGCTGGAGTCATCTGTTCAGATGCCCAAATCCAGAGCACAACCAGGCCAGATCTGTGGCCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 90 bp GGGGGATTGCAACTGGATGGGTCCCAGGACAACATCCACCTTTTCTaGGTAGGAGCCTACATCCCTCTTAGATCTCACTACGCAGCCTCT +
Preference number: 6 (lower is better)
Translates to: GGLQLDGSQDNIHLF*VGAYIPLRSHYAAS
Trigger: AGAGGCTGCGTAGTGAGATCTAAGAGGGATGTAGGCTCCTACCAAGAAAAGGTGGATGTTGTCCTGGGACCCATCCAGTTGCAATCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS TCA 72 bp AGTCATAGTTGCAGCCTCCTTCAAGCTGCACATCTGTaGAGACCACTGTCACGCGGTTCATGTTGGGGAGCA +
Preference number: 6 (lower is better)
Translates to: SHSCSLLQAAHL*RPLSRGSCWGA
Trigger: TGCTCCCCAACATGAACCGCGTGACAGTGGTCTTCACAGATGTGCAGCTTGAAGGAGGCTGCAACTATGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS TCA 72 bp AGTCATAGTTGCAGCCTCCTTCAAGCTGCACATCTGTaGAGGCCACTGTCACACGGTTCATGTTGGGGACCA +
Preference number: 6 (lower is better)
Translates to: SHSCSLLQAAHL*RPLSHGSCWGP
Trigger: TGGTCCCCAACATGAACCGTGTGACAGTGGCCTTCACAGATGTGCAGCTTGAAGGAGGCTGCAACTATGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS TCA 72 bp GTGGAAAGAACTGAATTTAAAGCGGGAGACGCGTGGTaGGGGCGAGGAGTAGGATTGGTAGGTATCATCCCG +
Preference number: 6 (lower is better)
Translates to: VERTEFKAGDAW*GRGVGLVGIIP
Trigger: CGGGATGATACCTACCAATCCTACTCCTCGCCCTCACCACGCGTCTCCCGCTTTAAATTCAGTTCTTTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS GCA 72 bp CCCTGGCAGAATAGCCCATGGACTGAAGGTAGCTCCTaGTCACGCTGGCTTGCATGTGATTTGACTGACAAA +
Preference number: 6 (lower is better)
Translates to: PWQNSPWTEGSS*SRWLACDLTDK
Trigger: TTTGTCAGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCTACCTTCAGTCCATGGGCTATTCTGCCAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 72 bp GTAGTAGTAGGCCACAGATCTGGCCTGGTTGTGCTCTaGATTTGGGCATCTGAACAGATGACTCCAGCATCC +
Preference number: 6 (lower is better)
Translates to: VVVGHRSGLVVL*IWASEQMTPAS
Trigger: GGATGCTGGAGTCATCTGTTCAGATGCCCAAATCCAGAGCACAACCAGGCCAGATCTGTGGCCTACTACTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CCA 72 bp CACTGCAGGTACACTGAGGGGAAGCGGTTCAGGAAGTaGAAAGAACTGAATTTAAAGCGGGAGACGCGTGGT +
Preference number: 6 (lower is better)
Translates to: HCRYTEGKRFRK*KELNLKRETRG
Trigger: ACCACGCGTCTCCCGCTTTAAATTCAGTTCTTTCCACTTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 72 bp AGGACAATTCTGGGTCGAGGCTCCTCTTTTCTTTGCTaGGGGATTGCAACTGGATGGGTCCCAGGACAACAT +
Preference number: 6 (lower is better)
Translates to: RTILGRGSSFLC*GIATGWVPGQH
Trigger: ATGTTGTCCTGGGACCCATCCAGTTGCAATCCCCCAGCAAAGAAAAGAGGAGCCTCGACCCAGAATTGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209015.3
CDS TCA 72 bp AGTCATAGTTGCAGCCTCCTTCAAGCTGCACATCTGTaGAGACCACTGTCACACGGTTCATGTTGGGGACCA +
Preference number: 6 (lower is better)
Translates to: SHSCSLLQAAHL*RPLSHGSCWGP
Trigger: TGGTCCCCAACATGAACCGTGTGACAGTGGTCTTCACAGATGTGCAGCTTGAAGGAGGCTGCAACTATGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS TCA 72 bp TCCTTCTGTGCTTTGTTCAGCTGTATAGGACACTTCTaGGCATACAACTCCGGCGTCTTCCCTGTGGCCACA +
Preference number: 6 (lower is better)
Translates to: SFCALFSCIGHF*AYNSGVFPVAT
Trigger: TGTGGCCACAGGGAAGACGCCGGAGTTGTATGCTCAGAAGTGTCCTATACAGCTGAACAAAGCACAGAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS GCA 72 bp GAGGTATCATACGCTCGACATACTACCAGTTTACACTaGAGGTACACTGAGGGGAAGCGGTTCAGGAAGTGG +
Preference number: 6 (lower is better)
Translates to: EVSYARHTTSLH*RYTEGKRFRKW
Trigger: CCACTTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGTAAACTGGTAGTATGTCGAGCGTATGATACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS TCA 72 bp CGCTCGACATACTACCAGTTTACACTGCAGGTACACTaGGGGGAAGCGGTTCAGGAAGTGGAAAGAACTGAA +
Preference number: 6 (lower is better)
Translates to: RSTYYQFTLQVH*GEAVQEVERTE
Trigger: TTCAGTTCTTTCCACTTCCTGAACCGCTTCCCCTCAGTGTACCTGCAGTGTAAACTGGTAGTATGTCGAGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS GCA 72 bp TTGTTGGTGATGTACATGGTGTTGACCCAGGTGTTCTaGAGCATCTTGCAGCTGACGTGGATATTCAGGTCC +
Preference number: 6 (lower is better)
Translates to: LLVMYMVLTQVF*SILQLTWIFRS
Trigger: GGACCTGAATATCCACGTCAGCTGCAAGATGCTGCAGAACACCTGGGTCAACACCATGTACATCACCAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS GCA 72 bp GGTACAAATTCTGGTCCAGATCCACGTAGTATGGGCTaGTGGTCACTGGAAACAAGAAGGAGGAGGATGTGT +
Preference number: 6 (lower is better)
Translates to: GTNSGPDPRSMG*WSLETRRRRMC
Trigger: ACACATCCTCCTCCTTCTTGTTTCCAGTGACCAGCAGCCCATACTACGTGGATCTGGACCAGAATTTGTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 72 bp TGGCATTGTTTGGATAGTTTGAAGGGTAGTATGGGCTaGAAAATTGCCCAGAGGGTTGGGTCAGGAGACCTC +
Preference number: 6 (lower is better)
Translates to: WHCLDSLKGSMG*KIAQRVGSGDL
Trigger: GAGGTCTCCTGACCCAACCCTCTGGGCAATTTTCCAGCCCATACTACCCTTCAAACTATCCAAACAATGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CCA 72 bp AATAGCCCATGGACTGAAGGTAGCTCCTGCTCACGCTaGCTTGCATGTGATTTGACTGACAAAGGAGATTGG +
Preference number: 6 (lower is better)
Translates to: NSPWTEGSSCSR*LACDLTDKGDW
Trigger: CCAATCTCCTTTGTCAGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCTACCTTCAGTCCATGGGCTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 72 bp CTGGTCCAGATCCACGTAGTATGGGCTGCTGGTCACTaGAAACAAGAAGGAGGAGGATGTGTAGAAGGAAAT +
Preference number: 6 (lower is better)
Translates to: LVQIHVVWAAGH*KQEGGGCVEGN
Trigger: ATTTCCTTCTACACATCCTCCTCCTTCTTGTTTCCAGTGACCAGCAGCCCATACTACGTGGATCTGGACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CAA 72 bp ACGGACATGAAGTTTCCGGTTGAGGTGAAAGATCCATaGGACCCATCACACACCCGAGCAATGAGAGACGAA +
Preference number: 6 (lower is better)
Translates to: TDMKFPVEVKDP*DPSHTRAMRDE
Trigger: TTCGTCTCTCATTGCTCGGGTGTGTGATGGGTCCAATGGATCTTTCACCTCAACCGGAAACTTCATGTCCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 72 bp CAACTGGATGGGTCCCAGGACAACATCCACCTTTTCTaGGTAGGAGCCTACATCCCTCTTAGATCTCACTAC +
Preference number: 6 (lower is better)
Translates to: QLDGSQDNIHLF*VGAYIPLRSHY
Trigger: GTAGTGAGATCTAAGAGGGATGTAGGCTCCTACCAAGAAAAGGTGGATGTTGTCCTGGGACCCATCCAGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CAA 90 bp CCATGGACTGAAGGTAGCTCCTGCTCACGCTGGCTTGCATGTGATTaGACTGACAAAGGAGATTGGTGGTGTTATTGTCAAAGTCGGAGT +
Preference number: 6 (lower is better)
Translates to: PWTEGSSCSRWLACD*TDKGDWWCYCQSRS
Trigger: ACTCCGACTTTGACAATAACACCACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCTACCTTCAGTCCATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CAA 90 bp CTCCTCCATTCTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATaGGTGTATAATCAGGAACGGTTGTCTGCTCTGCTGTGGTTTGGT +
Preference number: 6 (lower is better)
Translates to: LLHSPASRPNCFLFL*VYNQERLSALLWFG
Trigger: ACCAAACCACAGCAGAGCAGACAACCGTTCCTGATTATACACCAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAGAATGGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS CCA 72 bp CTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATTaGTGTATAATCAGGAACGGTTGTCTGCTCTGCTGT +
Preference number: 6 (lower is better)
Translates to: LQPHGQTVFCSY*CIIRNGCLLCC
Trigger: ACAGCAGAGCAGACAACCGTTCCTGATTATACACCAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS CAA 72 bp CAGTGGTTTGTTCAGTTGGGTAGAACACATCATTATTaGTCCCTCCTGGATTCCACCAACCAGGTGTGGGAC +
Preference number: 6 (lower is better)
Translates to: QWFVQLGRTHHY*SLLDSTNQVWD
Trigger: GTCCCACACCTGGTTGGTGGAATCCAGGAGGGACAAATAATGATGTGTTCTACCCAACTGAACAAACCACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 72 bp TCTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATaGGTGTATAATCAGGAACGGTTGTCTGCTCTGCTG +
Preference number: 6 (lower is better)
Translates to: SPASRPNCFLFL*VYNQERLSALL
Trigger: CAGCAGAGCAGACAACCGTTCCTGATTATACACCAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS CAA 90 bp CTCCATTCTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATTGTaGTATAATCAGGAACGGTTGTCTGCTCTGCTGTGGTTTGGTCAG +
Preference number: 6 (lower is better)
Translates to: LHSPASRPNCFLFLL*YNQERLSALLWFGQ
Trigger: CTGACCAAACCACAGCAGAGCAGACAACCGTTCCTGATTATACAACAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAGAATGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS CAA 90 bp CTCCTCCATTCTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATaGTTGTATAATCAGGAACGGTTGTCTGCTCTGCTGTGGTTTGGT +
Preference number: 6 (lower is better)
Translates to: LLHSPASRPNCFLFL*LYNQERLSALLWFG
Trigger: ACCAAACCACAGCAGAGCAGACAACCGTTCCTGATTATACAACAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAGAATGGAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS CAA 90 bp CTCCTCCATTCTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATaGGTGTATAATCAGGAACGGTTGTCTGCTCTACTGTGGTTTGGT +
Preference number: 6 (lower is better)
Translates to: LLHSPASRPNCFLFL*VYNQERLSALLWFG
Trigger: ACCAAACCACAGTAGAGCAGACAACCGTTCCTGATTATACACCAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAGAATGGAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS CAA 90 bp TTGTTGGTGATGTACATGGTGTTGACCCAGGTGTTCTGCAGCATCTaGCAGCTGACGTGGATATTCAGGTCCTTTCTCCTTTTGATGATG +
Preference number: 6 (lower is better)
Translates to: LLVMYMVLTQVFCSI*QLTWIFRSFLLLMM
Trigger: CATCATCAAAAGGAGAAAGGACCTGAATATCCACGTCAGCTGCAAGATGCTGCAGAACACCTGGGTCAACACCATGTACATCACCAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS TCA 72 bp TTCCAGTTATGTTTGGGAATGATGGAGGACTTGTGCTaGCTGTGGAGTAGTAGTAAGCCTGAAACCCTCTCC +
Preference number: 6 (lower is better)
Translates to: FQLCLGMMEDLC*LWSSSKPETLS
Trigger: GGAGAGGGTTTCAGGCTTACTACTACTCCACAGTCAGCACAAGTCCTCCATCATTCCCAAACATAACTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CCA 72 bp CTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATTaGTGTATAATCAGGAACGGTTGTCTGCTCTACTGT +
Preference number: 6 (lower is better)
Translates to: LQPHGQTVFCSY*CIIRNGCLLYC
Trigger: ACAGTAGAGCAGACAACCGTTCCTGATTATACACCAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS CAA 72 bp TCTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATaGTTGTATAATCAGGAACGGTTGTCTGCTCTGCTG +
Preference number: 6 (lower is better)
Translates to: SPASRPNCFLFL*LYNQERLSALL
Trigger: CAGCAGAGCAGACAACCGTTCCTGATTATACAACAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS CAA 72 bp TCTCCAGCCTCACGGCCAAACTGTTTTCTGTTCCTATaGGTGTATAATCAGGAACGGTTGTCTGCTCTACTG +
Preference number: 6 (lower is better)
Translates to: SPASRPNCFLFL*VYNQERLSALL
Trigger: CAGTAGAGCAGACAACCGTTCCTGATTATACACCAATAGGAACAGAAAACAGTTTGGCCGTGAGGCTGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS CAA 72 bp ACGGACATGAAGTTTCCGGTTGAGGTGAAAGAGCCATaGGAACCATCACAAACCCGAGCAATGAGAGAAGAA +
Preference number: 6 (lower is better)
Translates to: TDMKFPVEVKEP*EPSQTRAMREE
Trigger: TTCTTCTCTCATTGCTCGGGTTTGTGATGGTTCCAATGGCTCTTTCACCTCAACCGGAAACTTCATGTCCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 72 bp CCCAGGGTAGAATGGGCTAGAAAATTGCCCAGAGGGTaGGGTCAGGAAACCTCCACAAGTATAGTTTACATA +
Preference number: 6 (lower is better)
Translates to: PRVEWARKLPRG*GQETSTSIVYI
Trigger: TATGTAAACTATACTTGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATTTTCTAGCCCATTCTACCCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CAA 72 bp GAAGGTAGCTCCTGCTCACGCTGGCTTGCATGTGATTaGACTGACAAAGGAGATTGGTGGTGTTATTGTCAA +
Preference number: 6 (lower is better)
Translates to: EGSSCSRWLACD*TDKGDWWCYCQ
Trigger: TTGACAATAACACCACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCTACCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CAA 72 bp TTGCAGCTGACGTGGATATTCAGGTCCTTTCTCCTTTaGATGATGCCGTTTGAAACAACCGCTCTGAGGAAG +
Preference number: 6 (lower is better)
Translates to: LQLTWIFRSFLL*MMPFETTALRK
Trigger: CTTCCTCAGAGCGGTTGTTTCAAACGGCATCATCAAAAGGAGAAAGGACCTGAATATCCACGTCAGCTGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CAA 90 bp AGGATAATTCCCAGGGTAGAATGGGCTAGAAAATTGCCCAGAGGGTaGGGTCAGGAAACCTCCACAAGTATAGTTTACATAGGAAGGACT +
Preference number: 6 (lower is better)
Translates to: RIIPRVEWARKLPRG*GQETSTSIVYIGRT
Trigger: AGTCCTTCCTATGTAAACTATACTTGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATTTTCTAGCCCATTCTACCCTGGGAATTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS TCA 72 bp AAGGTAGCTCCTGCTCACGCTGGCTTGCATGTGATTTaGCTGACAAAGGAGATTGGTGGTGTTATTGTCAAA +
Preference number: 6 (lower is better)
Translates to: KVAPAHAGLHVI*LTKEIGGVIVK
Trigger: TTTGACAATAACACCACCAATCTCCTTTGTCAGTCAAATCACATGCAAGCCAGCGTGAGCAGGAGCTACCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 72 bp ACATCTGGCATTATTAGGATAATTCCCAGGGTAGAATaGGCTAGAAAATTGCCCAGAGGGTTGGGTCAGGAA +
Preference number: 6 (lower is better)
Translates to: TSGIIRIIPRVE*ARKLPRGLGQE
Trigger: TTCCTGACCCAACCCTCTGGGCAATTTTCTAGCCCATTCTACCCTGGGAATTATCCTAATAATGCCAGATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 72 bp CAAATCTCTGAAGACCACAGTCACACGGTAGTTGTTTaGGACCTCGATGTTCCACAGACATCTGGCATTATT +
Preference number: 6 (lower is better)
Translates to: QISEDHSHTVVV*DLDVPQTSGII
Trigger: AATAATGCCAGATGTCTGTGGAACATCGAGGTCCCAAACAACTACCGTGTGACTGTGGTCTTCAGAGATTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CAA 72 bp CAGAATCTGTTCCTATTGGTGTATAATCAGGAACGGTaGTCTGCTCTGCTGTGGTTTGGTCAGTTGGGTAGA +
Preference number: 6 (lower is better)
Translates to: QNLFLLVYNQER*SALLWFGQLGR
Trigger: TCTACCCAACTGACCAAACCACAGCAGAGCAGACAACCGTTCCTGATTATACACCAATAGGAACAGATTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS TCA 72 bp TATTTCCCAGGAACATCTGGCATTGTTAGGATAGTTTaGAGGGTAGTATGGGCTGGAAAATTGTCCAGAGGG +
Preference number: 6 (lower is better)
Translates to: YFPGTSGIVRIV*RVVWAGKLSRG
Trigger: CCCTCTGGACAATTTTCCAGCCCATACTACCCTTCAAACTATCCTAACAATGCCAGATGTTCCTGGGAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CCA 72 bp AGGAATGGTTGTCTGCTCTGCTGTGGTTTGTTCAGTTaGATAGAACACATCGTTATTTGTCCCTCCTGGATT +
Preference number: 6 (lower is better)
Translates to: RNGCLLCCGLFS*IEHIVICPSWI
Trigger: AATCCAGGAGGGACAAATAACGATGTGTTCTATCCAACTGAACAAACCACAGCAGAGCAGACAACCATTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 72 bp CCAAACCAGAATCTGTTCCTGCAGTGGTTTGTTCAGTaGGGTAGAACACATCATTATTTGTCCCTCCTGGAT +
Preference number: 6 (lower is better)
Translates to: PNQNLFLQWFVQ*GRTHHYLSLLD
Trigger: ATCCAGGAGGGACAAATAATGATGTGTTCTACCCAACTGAACAAACCACTGCAGGAACAGATTCTGGTTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 72 bp TGTTTTCTGTTCCTATTGGTGTATAATCAGGAACGGTaGTCTGCTCTGCTGTGGTTTGGTCAGTTGGGTAGA +
Preference number: 6 (lower is better)
Translates to: CFLFLLVYNQER*SALLWFGQLGR
Trigger: TCTACCCAACTGACCAAACCACAGCAGAGCAGACAACCGTTCCTGATTATACACCAATAGGAACAGAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213064.3
CDS CAA 90 bp ATGAAGACTACGGACATGAAGTTTCCGGTTGAGGTGAAAGAGCCATaGGAACCATCACAAACCCGAGCAATGAGAGAAGAATTGTATTCA +
Preference number: 6 (lower is better)
Translates to: MKTTDMKFPVEVKEP*EPSQTRAMREELYS
Trigger: TGAATACAATTCTTCTCTCATTGCTCGGGTTTGTGATGGTTCCAATGGCTCTTTCACCTCAACCGGAAACTTCATGTCCGTAGTCTTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS GCA 72 bp AGGAGGATGTGTAGAAGGAAATGTTTACGTCGAAATTaGCATACTGAACTTCCTGGATCTCCACTGTGTTGT +
Preference number: 6 (lower is better)
Translates to: RRMCRRKCLRRN*HTELPGSPLCC
Trigger: ACAACACAGTGGAGATCCAGGAAGTTCAGTATGGCAATTTCGACGTAAACATTTCCTTCTACACATCCTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000209015.3
ENSMUST00000213064.3
CDS CCA 72 bp CAAACCAGAATCTGTTCCTGCAGTGGTTTGTTCAGTTaGGTAGAACACATCATTATTTGTCCCTCCTGGATT +
Preference number: 6 (lower is better)
Translates to: QTRICSCSGLFS*VEHIIICPSWI
Trigger: AATCCAGGAGGGACAAATAATGATGTGTTCTACCCAACTGAACAAACCACTGCAGGAACAGATTCTGGTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 72 bp TGTTTTCTGTTCCTATTGTTGTATAATCAGGAACGGTaGTCTGCTCTGCTGTGGTTTGGTCAGTTGGGTAGA +
Preference number: 6 (lower is better)
Translates to: CFLFLLLYNQER*SALLWFGQLGR
Trigger: TCTACCCAACTGACCAAACCACAGCAGAGCAGACAACCGTTCCTGATTATACAACAATAGGAACAGAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
CDS CAA 90 bp ATGAAGACTACGGACATGAAGTTTCCGGTTGAGGTGAAAGATCCATaGAACCCATCACACACCGGAGCAATGAGAGAAGAATTATATTCA +
Preference number: 6 (lower is better)
Translates to: MKTTDMKFPVEVKDP*NPSHTGAMREELYS
Trigger: TGAATATAATTCTTCTCTCATTGCTCCGGTGTGTGATGGGTTCAATGGATCTTTCACCTCAACCGGAAACTTCATGTCCGTAGTCTTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 72 bp TGTATAATCAGGAATGGTTGTCTGCTCTGCTGTGGTTaGTTCAGTTGGATAGAACACATCGTTATTTGTCCC +
Preference number: 6 (lower is better)
Translates to: CIIRNGCLLCCG*FSWIEHIVICP
Trigger: GGGACAAATAACGATGTGTTCTATCCAACTGAACAAACCACAGCAGAGCAGACAACCATTCCTGATTATACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CCA 72 bp TTGGTGTATAATCAGGAATGGTTGTCTGCTCTGCTGTaGTTTGTTCAGTTGGATAGAACACATCGTTATTTG +
Preference number: 6 (lower is better)
Translates to: LVYNQEWLSALL*FVQLDRTHRYL
Trigger: CAAATAACGATGTGTTCTATCCAACTGAACAAACCACAGCAGAGCAGACAACCATTCCTGATTATACACCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3
CDS CAA 72 bp TGTGGGAACAGCTGTTTGAGATGCTGTAGACAGAATTaGACCCCACAAAAGACATATTTCAAAGATAACAGT +
Preference number: 6 (lower is better)
Translates to: CGNSCLRCCRQN*TPQKTYFKDNS
Trigger: ACTGTTATCTTTGAAATATGTCTTTTGTGGGGTCAAATTCTGTCTACAGCATCTCAAACAGCTGTTCCCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084509.7
ENSMUST00000208311.4
ENSMUST00000213064.3