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Pregenerated sensors for DMAC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028398

Ensembl transcript IDs: ENSMUST00000030103.9

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACTGAACAGCACATAACCTCCCTGGACAAGACAGAGAACCATGTTTaGTTCCAAGGGGTTTATTTGTCTCTTTATAATCTGAGAGGGGGT +
Preference number: 1 (lower is better)
Translates to: TEQHITSLDKTENHV*FQGVYLSLYNLRGG
Trigger: ACCCCCTCTCAGATTATAAAGAGACAAATAAACCCCTTGGAAGCAAACATGGTTCTCTGTCTTGTCCAGGGAGGTTATGTGCTGTTCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
3UTR TCA 90 bp TCCCATTTTAATATGTTCTCAAAAACGTTATCTTTCAGTATAAACTaGACAGCACATAACCTCCCTGGACAAGACAGAGAACCATGTTTG +
Preference number: 1 (lower is better)
Translates to: SHFNMFSKTLSFSIN*TAHNLPGQDREPCL
Trigger: CAAACATGGTTCTCTGTCTTGTCCAGGGAGGTTATGTGCTGTTCAGTTTATACTGAAAGATAACGTTTTTGAGAACATATTAAAATGGGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
3UTR-3UTR CCA 90 bp ACAGCACATAACCTCCCTGGACAAGACAGAGAACCATGTTTGCTTCCAAGGGGTAACCGTAAGCATCCATaGCCAAAGAATGACAGCTCA +
Preference number: 2 (lower is better)
Translates to: TAHNLPGQDREPCLLPRGNRKHP*PKNDSS
Trigger: TGAGCTGTCATTCTTTGGCCATGGATGCTTACGGTT...ACCCCTTGGAAGCAAACATGGTTCTCTGTCTTGTCCAGGGAGGTTATGTGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
3UTR-3UTR GCA 90 bp GACAAGACAGAGAACCATGTTTGCTTCCAAGGGGTTTATTTGTCTCTTTATAATAACGCTTGTTCTGTCTaGCCAGAAGCCAGTGATGAT +
Preference number: 2 (lower is better)
Translates to: DKTENHVCFQGVYLSLYNNACSV*PEASDD
Trigger: ATCATCACTGGCTTCTGGGCAGACAGAACAAGCGTT...ATTATAAAGAGACAAATAAACCCCTTGGAAGCAAACATGGTTCTCTGTCTTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
3UTR-3UTR CAA 90 bp ACAGCACATAACCTCCCTGGACAAGACAGAGAACCATGTTTGCTTCCAAGGGGTCCACCAACCCAACGCTaGTTCTGTCTGCCCAGAAGC +
Preference number: 3 (lower is better)
Translates to: TAHNLPGQDREPCLLPRGPPTQR*FCLPRS
Trigger: GCTTCTGGGCAGACAGAACAAGCGTTGGGTTGGTGG...ACCCCTTGGAAGCAAACATGGTTCTCTGTCTTGTCCAGGGAGGTTATGTGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
3UTR TCA 72 bp TTTGCTTCCAAGGGGTTTATTTGTCTCTTTATAATCTaGGAGGGGGTAAACCGTAAGCATCCATGGCCAAAG +
Preference number: 3 (lower is better)
Translates to: FASKGFICLFII*EGVNRKHPWPK
Trigger: CTTTGGCCATGGATGCTTACGGTTTACCCCCTCTCAGATTATAAAGAGACAAATAAACCCCTTGGAAGCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
3UTR GCA 72 bp CACATAACCTCCCTGGACAAGACAGAGAACCATGTTTaGTTCCAAGGGGTTTATTTGTCTCTTTATAATCTG +
Preference number: 3 (lower is better)
Translates to: HITSLDKTENHV*FQGVYLSLYNL
Trigger: CAGATTATAAAGAGACAAATAAACCCCTTGGAAGCAAACATGGTTCTCTGTCTTGTCCAGGGAGGTTATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
CDS-3UTR GCA 90 bp CTGGACAAGACAGAGAACCATGTTTGCTTCCAAGGGGTTTATTTGTCTCTTTATCCAGGTGGGATTCCTTaGTTCAGGGGCCGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: LDKTENHVCFQGVYLSLYPGGIP*FRGRLA
Trigger: GGCCAGGCGGCCCCTGAAGCAAGGAATCCCACCTGG...ATAAAGAGACAAATAAACCCCTTGGAAGCAAACATGGTTCTCTGTCTTGTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
CDS-3UTR GCA 90 bp CTGGACAAGACAGAGAACCATGTTTGCTTCCAAGGGGTTTATTTGTCTCTTTATATGCCGATGACCATCTaGAGAACGGTGCCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: LDKTENHVCFQGVYLSLYMPMTI*RTVPGP
Trigger: TGGCCCAGGCACCGTTCTGCAGATGGTCATCGGCAT...ATAAAGAGACAAATAAACCCCTTGGAAGCAAACATGGTTCTCTGTCTTGTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
CDS CCA 90 bp CCAACAGGCAATACTGATGCCGATGACCATCTGCAGAACGGTGCCTaGGCCAGGTGGGATTCCTTGCTTCAGGGGCCGCCTGGCCACCAA +
Preference number: 5 (lower is better)
Translates to: PTGNTDADDHLQNGA*ARWDSLLQGPPGHQ
Trigger: TTGGTGGCCAGGCGGCCCCTGAAGCAAGGAATCCCACCTGGCCCAGGCACCGTTCTGCAGATGGTCATCGGCATCAGTATTGCCTGTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
CDS CCA 90 bp AATACTGATGCCGATGACCATCTGCAGAACGGTGCCTGGGCCAGGTaGGATTCCTTGCTTCAGGGGCCGCCTGGCCACCAAATAGACGTA +
Preference number: 5 (lower is better)
Translates to: NTDADDHLQNGAWAR*DSLLQGPPGHQIDV
Trigger: TACGTCTATTTGGTGGCCAGGCGGCCCCTGAAGCAAGGAATCCCACCTGGCCCAGGCACCGTTCTGCAGATGGTCATCGGCATCAGTATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
CDS-3UTR CAA 90 bp ACAGCACATAACCTCCCTGGACAAGACAGAGAACCATGTTTGCTTCCAAGGGGTGGGTGGCTCTTCCCTTaGGGGTCTACCAGAACAACT +
Preference number: 5 (lower is better)
Translates to: TAHNLPGQDREPCLLPRGGWLFP*GSTRTT
Trigger: AGTTGTTCTGGTAGACCCCAAAGGGAAGAGCCACCC...ACCCCTTGGAAGCAAACATGGTTCTCTGTCTTGTCCAGGGAGGTTATGTGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
CDS CCA 72 bp GCCGATGACCATCTGCAGAACGGTGCCTGGGCCAGGTaGGATTCCTTGCTTCAGGGGCCGCCTGGCCACCAA +
Preference number: 6 (lower is better)
Translates to: ADDHLQNGAWAR*DSLLQGPPGHQ
Trigger: TTGGTGGCCAGGCGGCCCCTGAAGCAAGGAATCCCACCTGGCCCAGGCACCGTTCTGCAGATGGTCATCGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9
CDS CAA 90 bp GCCGATGACCATCTGCAGAACGGTGCCTGGGCCAGGTGGGATTCCTaGCTTCAGGGGCCGCCTGGCCACCAAATAGACGTAGGTGCCCGC +
Preference number: 6 (lower is better)
Translates to: ADDHLQNGAWARWDS*LQGPPGHQIDVGAR
Trigger: GCGGGCACCTACGTCTATTTGGTGGCCAGGCGGCCCCTGAAGCAAGGAATCCCACCTGGCCCAGGCACCGTTCTGCAGATGGTCATCGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030103.9