Pregenerated sensors for DLX5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029755Ensembl transcript IDs: ENSMUST00000052609.9, ENSMUST00000142635.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCTGGCTGCGCTTGGGTACCAGGAAGCCGAGTTCTCCAGGTAGCTaGACGCGGGGGACTGGTTGGAGGTCGGAGGGTGGGCATGAGGGT | + |
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Preference number: 1 (lower is better) Translates to: SWLRLGTRKPSSPGS*TRGTGWRSEGGHEG Trigger: ACCCTCATGCCCACCCTCCGACCTCCAACCAGTCCCCCGCGTCCAGCTACCTGGAGAACTCGGCTTCCTGGTACCCAAGCGCAGCCAGCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR TCA 90 bp | GTGCCAGCGGGTGCTGCAAGGAGCCCGGCGGTGGCAGGTGGGAATTaGTTGAGCTGGCTGCGCTTGGGTACCAGGAAGCCGAGTTCTCCA | + |
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Preference number: 1 (lower is better) Translates to: VPAGAARSPAVAGGN*LSWLRLGTRKPSSP Trigger: TGGAGAACTCGGCTTCCTGGTACCCAAGCGCAGCCAGCTCAATCAATTCCCACCTGCCACCGCCGGGCTCCTTGCAGCACCCGCTGGCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR TCA 90 bp | CAGCGGGTGCTGCAAGGAGCCCGGCGGTGGCAGGTGGGAATTGATTaGGCTGGCTGCGCTTGGGTACCAGGAAGCCGAGTTCTCCAGGTA | + |
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Preference number: 1 (lower is better) Translates to: QRVLQGARRWQVGID*AGCAWVPGSRVLQV Trigger: TACCTGGAGAACTCGGCTTCCTGGTACCCAAGCGCAGCCAGCTCAATCAATTCCCACCTGCCACCGCCGGGCTCCTTGCAGCACCCGCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR GCA 90 bp | GAGCAAGAGAAAGTAGCCCATCTAATAAAGCGTCCCGGAGGCCAGTaGCAGCGGGTGCTGCAAGGAGCCCGGCGGTGGCAGGTGGGAATT | + |
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Preference number: 1 (lower is better) Translates to: EQEKVAHLIKRPGGQ*QRVLQGARRWQVGI Trigger: AATTCCCACCTGCCACCGCCGGGCTCCTTGCAGCACCCGCTGGCACTGGCCTCCGGGACGCTTTATTAGATGGGCTACTTTCTCTTGCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR TCA 90 bp | TTTGTTTCCATTGTTCAAACATCCCCGTATGAATTCCTTTCTTTCTaGTTTCTAAACCAGCACAACACTGTAGTCCCAAAACTGAGCAAG | + |
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Preference number: 1 (lower is better) Translates to: FVSIVQTSPYEFLSF*FLNQHNTVVPKLSK Trigger: CTTGCTCAGTTTTGGGACTACAGTGTTGTGCTGGTTTAGAAATCAGAAAGAAAGGAATTCATACGGGGATGTTTGAACAATGGAAACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| 3UTR-3UTR GCA 90 bp | AGAGAGCGGGATGAGCCCTGGGGCTCCCACACCGCTGGTGACTGTGGCGAGTTACTGGAGCTGGGACTGTaGTCCGGGGGCATCTCCCCG | + |
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Preference number: 2 (lower is better) Translates to: RERDEPWGSHTAGDCGELLELGL*SGGISP Trigger: CGGGGAGATGCCCCCGGAGCACAGTCCCAGCTCCAG...TAACTCGCCACAGTCACCAGCGGTGTGGGAGCCCCAGGGCTCATCCCGCTCTCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR CAA 90 bp | AGTGCCAGCGGGTGCTGCAAGGAGCCCGGCGGTGGCAGGTGGGAATaGATTGAGCTGGCTGCGCTTGGGTACCAGGAAGCCGAGTTCTCC | + |
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Preference number: 2 (lower is better) Translates to: SASGCCKEPGGGRWE*IELAALGYQEAEFS Trigger: GGAGAACTCGGCTTCCTGGTACCCAAGCGCAGCCAGCTCAATCAATTCCCACCTGCCACCGCCGGGCTCCTTGCAGCACCCGCTGGCACT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR-3UTR TCA 90 bp | ACCAGGAAGCCGAGTTCTCCAGGTAGCTGGACGCGGGGGACTGGTTGGAGGTCGCTCCCACACCGCTGGTaGCTGTGGCGAGTTACACGC | + |
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Preference number: 2 (lower is better) Translates to: TRKPSSPGSWTRGTGWRSLPHRW*LWRVTR Trigger: GCGTGTAACTCGCCACAGTCACCAGCGGTGTGGGAG...CGACCTCCAACCAGTCCCCCGCGTCCAGCTACCTGGAGAACTCGGCTTCCTGGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR-3UTR TCA 90 bp | GAGAAAGTAGCCCATCTAATAAAGCGTCCCGGAGGCCAGTGCCAGCGGGTGCTGGGGGGCGGGGCTCTCTaGAATGCAATAACTTACATG | + |
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Preference number: 2 (lower is better) Translates to: EKVAHLIKRPGGQCQRVLGGGAL*NAITYM Trigger: CATGTAAGTTATTGCATTTCAGAGAGCCCCGCCCCC...CAGCACCCGCTGGCACTGGCCTCCGGGACGCTTTATTAGATGGGCTACTTTCTC 57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR-3UTR TCA 90 bp | GAGAAAGTAGCCCATCTAATAAAGCGTCCCGGAGGCCAGTGCCAGCGGGTGCTGGAATTCCTTTCTTTCTaGTTTCTAAACCAGCACAAC | + |
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Preference number: 2 (lower is better) Translates to: EKVAHLIKRPGGQCQRVLEFLSF*FLNQHN Trigger: GTTGTGCTGGTTTAGAAATCAGAAAGAAAGGAATTC...CAGCACCCGCTGGCACTGGCCTCCGGGACGCTTTATTAGATGGGCTACTTTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR CCA 72 bp | GCCAGCGGGTGCTGCAAGGAGCCCGGCGGTGGCAGGTaGGAATTGATTGAGCTGGCTGCGCTTGGGTACCAG | + |
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Preference number: 3 (lower is better) Translates to: ASGCCKEPGGGR*ELIELAALGYQ Trigger: CTGGTACCCAAGCGCAGCCAGCTCAATCAATTCCCACCTGCCACCGCCGGGCTCCTTGCAGCACCCGCTGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR TCA 72 bp | CTGCAAGGAGCCCGGCGGTGGCAGGTGGGAATTGATTaGGCTGGCTGCGCTTGGGTACCAGGAAGCCGAGTT | + |
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Preference number: 3 (lower is better) Translates to: LQGARRWQVGID*AGCAWVPGSRV Trigger: AACTCGGCTTCCTGGTACCCAAGCGCAGCCAGCTCAATCAATTCCCACCTGCCACCGCCGGGCTCCTTGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR TCA 72 bp | ATTGTTCAAACATCCCCGTATGAATTCCTTTCTTTCTaGTTTCTAAACCAGCACAACACTGTAGTCCCAAAA | + |
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Preference number: 3 (lower is better) Translates to: IVQTSPYEFLSF*FLNQHNTVVPK Trigger: TTTTGGGACTACAGTGTTGTGCTGGTTTAGAAATCAGAAAGAAAGGAATTCATACGGGGATGTTTGAACAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS-3UTR GCA 90 bp | ACCAGGAAGCCGAGTTCTCCAGGTAGCTGGACGCGGGGGACTGGTTGGAGGTCGGGCCGGGTAGCCGGCTaGGGAGCCGTTCACGCCGTG | + |
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Preference number: 4 (lower is better) Translates to: TRKPSSPGSWTRGTGWRSGRVAG*GAVHAV Trigger: CACGGCGTGAACGGCTCCGCAGCCGGCTACCCGGCC...CGACCTCCAACCAGTCCCCCGCGTCCAGCTACCTGGAGAACTCGGCTTCCTGGT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CCA 90 bp | ACCAGGAAGCCGAGTTCTCCAGGTAGCTGGACGCGGGGGACTGGTTGGAGGTCGGAGACGGGTGGTGCATaGCGGCGGACGTCGGGAACG | + |
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Preference number: 4 (lower is better) Translates to: TRKPSSPGSWTRGTGWRSETGGA*RRTSGT Trigger: CGTTCCCGACGTCCGCCGCCATGCACCACCCGTCTC...CGACCTCCAACCAGTCCCCCGCGTCCAGCTACCTGGAGAACTCGGCTTCCTGGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CCA 90 bp | CTGTGGCGAGTTACACGCCATAGGGTCGCTGGAGCTGGGACTGTGCTCCGGGGGAAGCTGGCTGGCTGGTaGCACTCGGGACGCGGTTGT | + |
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Preference number: 4 (lower is better) Translates to: LWRVTRHRVAGAGTVLRGKLAGW*HSGRGC Trigger: ACAACCGCGTCCCGAGTGCCACCAGCCAGCCAGCTT...CCCCCGGAGCACAGTCCCAGCTCCAGCGACCCTATGGCGTGTAACTCGCCACAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| 3UTR CAA 72 bp | GGGTGCTGCAAGGAGCCCGGCGGTGGCAGGTGGGAATaGATTGAGCTGGCTGCGCTTGGGTACCAGGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: GCCKEPGGGRWE*IELAALGYQEA Trigger: GGCTTCCTGGTACCCAAGCGCAGCCAGCTCAATCAATTCCCACCTGCCACCGCCGGGCTCCTTGCAGCACCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR TCA 90 bp | CCCTGGGGCTCCCACACCGCTGGTGACTGTGGCGAGTTACACGCCATAGGGTCGTGTAAAGCGGCCAGCTaGAAGCTGGCTGGCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: PWGSHTAGDCGELHAIGSCKAAS*KLAGWW Trigger: CCACCAGCCAGCCAGCTTTCAGCTGGCCGCTTTACA...CGACCCTATGGCGTGTAACTCGCCACAGTCACCAGCGGTGTGGGAGCCCCAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CCA 90 bp | CCCTGGGGCTCCCACACCGCTGGTGACTGTGGCGAGTTACACGCCATAGGGTCGACTGGTGGTAGGGGCTaGCGTAGCCGTAGTCGGCAT | + |
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Preference number: 4 (lower is better) Translates to: PWGSHTAGDCGELHAIGSTGGRG*RSRSRH Trigger: ATGCCGACTACGGCTACGCCAGCCCCTACCACCAGT...CGACCCTATGGCGTGTAACTCGCCACAGTCACCAGCGGTGTGGGAGCCCCAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CCA 90 bp | TGGCTGCGCTTGGGTACCAGGAAGCCGAGTTCTCCAGGTAGCTGGACGCGGGGGCAACTCCGCGCGTTCTaGCAGGGCGAGGTACTGAGT | + |
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Preference number: 4 (lower is better) Translates to: WLRLGTRKPSSPGSWTRGQLRAF*QGEVLS Trigger: ACTCAGTACCTCGCCCTGCCAGAACGCGCGGAGTTG...CCCCCGCGTCCAGCTACCTGGAGAACTCGGCTTCCTGGTACCCAAGCGCAGCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR TCA 90 bp | CCCTGGGGCTCCCACACCGCTGGTGACTGTGGCGAGTTACACGCCATAGGGTCGAAAGTTGGCGATTCCTaGGACGGGTGGTGCATGGCG | + |
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Preference number: 4 (lower is better) Translates to: PWGSHTAGDCGELHAIGSKVGDS*DGWCMA Trigger: CGCCATGCACCACCCGTCTCAGGAATCGCCAACTTT...CGACCCTATGGCGTGTAACTCGCCACAGTCACCAGCGGTGTGGGAGCCCCAGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CCA 90 bp | ACCGCTGGTGACTGTGGCGAGTTACACGCCATAGGGTCGCTGGAGCTGGGACTGCAGCTGAAAGCTGGCTaGCTGGTGGCACTCGGGACG | + |
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Preference number: 4 (lower is better) Translates to: TAGDCGELHAIGSLELGLQLKAG*LVALGT Trigger: CGTCCCGAGTGCCACCAGCCAGCCAGCTTTCAGCTG...CAGTCCCAGCTCCAGCGACCCTATGGCGTGTAACTCGCCACAGTCACCAGCGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CCA 90 bp | ACCGCTGGTGACTGTGGCGAGTTACACGCCATAGGGTCGCTGGAGCTGGGACTGGTCGGGAACGGAGCTTaGAAGTCGCCGGATCGGATG | + |
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Preference number: 4 (lower is better) Translates to: TAGDCGELHAIGSLELGLVGNGA*KSPDRM Trigger: CATCCGATCCGGCGACTTCCAAGCTCCGTTCCCGAC...CAGTCCCAGCTCCAGCGACCCTATGGCGTGTAACTCGCCACAGTCACCAGCGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CCA 90 bp | AGAGAGCGGGATGAGCCCTGGGGCTCCCACACCGCTGGTGACTGTGGCGAGTTAGGACTCGGGCAAAGTTaGCGATTCCTGAGACGGGTG | + |
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Preference number: 4 (lower is better) Translates to: RERDEPWGSHTAGDCGELGLGQS*RFLRRV Trigger: CACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCC...TAACTCGCCACAGTCACCAGCGGTGTGGGAGCCCCAGGGCTCATCCCGCTCTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CCA 90 bp | GAGAAAGTAGCCCATCTAATAAAGCGTCCCGGAGGCCAGTGCCAGCGGGTGCTGAGTCGGCATAAGCCTTaGCCGGGTAGCCGGCTGCGG | + |
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Preference number: 4 (lower is better) Translates to: EKVAHLIKRPGGQCQRVLSRHKP*PGSRLR Trigger: CCGCAGCCGGCTACCCGGCCAAGGCTTATGCCGACT...CAGCACCCGCTGGCACTGGCCTCCGGGACGCTTTATTAGATGGGCTACTTTCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR GCA 90 bp | CCCTGGGGCTCCCACACCGCTGGTGACTGTGGCGAGTTACACGCCATAGGGTCGAGTCGCCGGATCGGATaGTTGGGACTCTTCTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: PWGSHTAGDCGELHAIGSSRRIG*LGLFCQ Trigger: TTGACAGAAGAGTCCCAAGCATCCGATCCGGCGACT...CGACCCTATGGCGTGTAACTCGCCACAGTCACCAGCGGTGTGGGAGCCCCAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CCA 90 bp | AGAGAGCGGGATGAGCCCTGGGGCTCCCACACCGCTGGTGACTGTGGCGAGTTAAGTAGTCAGAATCGGTaGCCGAGGACTCGGGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: RERDEPWGSHTAGDCGELSSQNR*PRTRAK Trigger: CTTTGCCCGAGTCCTCGGCCACCGATTCTGACTACT...TAACTCGCCACAGTCACCAGCGGTGTGGGAGCCCCAGGGCTCATCCCGCTCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CCA 90 bp | ACCGCTGGTGACTGTGGCGAGTTACACGCCATAGGGTCGCTGGAGCTGGGACTGGCCGGATCGGATGCTTaGGACTCTTCTGTCAAACAC | + |
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Preference number: 4 (lower is better) Translates to: TAGDCGELHAIGSLELGLAGSDA*DSSVKH Trigger: GTGTTTGACAGAAGAGTCCCAAGCATCCGATCCGGC...CAGTCCCAGCTCCAGCGACCCTATGGCGTGTAACTCGCCACAGTCACCAGCGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR TCA 90 bp | GAGAAAGTAGCCCATCTAATAAAGCGTCCCGGAGGCCAGTGCCAGCGGGTGCTGGGTACTGGTAGGGGTTaGGCGCTTTGCCATAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: EKVAHLIKRPGGQCQRVLGTGRG*ALCHKK Trigger: CTTCTTATGGCAAAGCGCTCAACCCCTACCAGTACC...CAGCACCCGCTGGCACTGGCCTCCGGGACGCTTTATTAGATGGGCTACTTTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS CCA 90 bp | CACTCGGGACGCGGTTGTAGGCGCCGCCGTACTGGTGGTAGGGGCTaGCGTAGCCGTAGTCGGCATAAGCCTTGGCCGGGTAGCCGGCTG | + |
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Preference number: 5 (lower is better) Translates to: HSGRGCRRRRTGGRG*RSRSRHKPWPGSRL Trigger: CAGCCGGCTACCCGGCCAAGGCTTATGCCGACTACGGCTACGCCAGCCCCTACCACCAGTACGGCGGCGCCTACAACCGCGTCCCGAGTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CCA 90 bp | AGCCGTGCGGGGCGGCCCCCGCGGGACTGTAGTAGTCAGAATCGGTaGCCGAGGACTCGGGCAAAGTTGGCGATTCCTGAGACGGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: SRAGRPPRDCSSQNR*PRTRAKLAIPETGG Trigger: ACCACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCCTCGGCCACCGATTCTGACTACTACAGTCCCGCGGGGGCCGCCCCGCACGGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CCA 90 bp | CGTACTGGTGGTAGGGGCTGGCGTAGCCGTAGTCGGCATAAGCCTTaGCCGGGTAGCCGGCTGCGGAGCCGTTCACGCCGTGGTACTGGT | + |
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Preference number: 5 (lower is better) Translates to: RTGGRGWRSRSRHKP*PGSRLRSRSRRGTG Trigger: ACCAGTACCACGGCGTGAACGGCTCCGCAGCCGGCTACCCGGCCAAGGCTTATGCCGACTACGGCTACGCCAGCCCCTACCACCAGTACG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS GCA 90 bp | GCTGGCGTAGCCGTAGTCGGCATAAGCCTTGGCCGGGTAGCCGGCTaGGGAGCCGTTCACGCCGTGGTACTGGTACTGGTAGGGGTTGAG | + |
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Preference number: 5 (lower is better) Translates to: AGVAVVGISLGRVAG*GAVHAVVLVLVGVE Trigger: CTCAACCCCTACCAGTACCAGTACCACGGCGTGAACGGCTCCGCAGCCGGCTACCCGGCCAAGGCTTATGCCGACTACGGCTACGCCAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CCA 90 bp | CCGAGGACTCGGGCAAAGTTGGCGATTCCTGAGACGGGTGGTGCATaGCGGCGGACGTCGGGAACGGAGCTTGGAAGTCGCCGGATCGGA | + |
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Preference number: 5 (lower is better) Translates to: PRTRAKLAIPETGGA*RRTSGTELGSRRIG Trigger: TCCGATCCGGCGACTTCCAAGCTCCGTTCCCGACGTCCGCCGCCATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCCTCGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS-3UTR CAA 90 bp | ACCAGGAAGCCGAGTTCTCCAGGTAGCTGGACGCGGGGGACTGGTTGGAGGTCGCGTCGGGAACGGAGCTaGGAAGTCGCCGGATCGGAT | + |
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Preference number: 5 (lower is better) Translates to: TRKPSSPGSWTRGTGWRSRRERS*EVAGSD Trigger: ATCCGATCCGGCGACTTCCAAGCTCCGTTCCCGACG...CGACCTCCAACCAGTCCCCCGCGTCCAGCTACCTGGAGAACTCGGCTTCCTGGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS CCA 90 bp | GGGACTGTAGTAGTCAGAATCGGTGGCCGAGGACTCGGGCAAAGTTaGCGATTCCTGAGACGGGTGGTGCATGGCGGCGGACGTCGGGAA | + |
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Preference number: 5 (lower is better) Translates to: GTVVVRIGGRGLGQS*RFLRRVVHGGGRRE Trigger: TTCCCGACGTCCGCCGCCATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCCTCGGCCACCGATTCTGACTACTACAGTCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS-3UTR CAA 90 bp | TGGTGGCTGAGAGAGCGGGATGAGCCCTGGGGCTCCCACACCGCTGGTGACTGTCGCCGGATCGGATGCTaGGGACTCTTCTGTCAAACA | + |
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Preference number: 5 (lower is better) Translates to: WWLRERDEPWGSHTAGDCRRIGC*GLFCQT Trigger: TGTTTGACAGAAGAGTCCCAAGCATCCGATCCGGCG...ACAGTCACCAGCGGTGTGGGAGCCCCAGGGCTCATCCCGCTCTCTCAGCCACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS-3UTR CAA 90 bp | GAGAAAGTAGCCCATCTAATAAAGCGTCCCGGAGGCCAGTGCCAGCGGGTGCTGAGGACTCGGGCAAAGTaGGCGATTCCTGAGACGGGT | + |
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Preference number: 5 (lower is better) Translates to: EKVAHLIKRPGGQCQRVLRTRAK*AIPETG Trigger: ACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCCT...CAGCACCCGCTGGCACTGGCCTCCGGGACGCTTTATTAGATGGGCTACTTTCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142635.2 |
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| CDS CCA 72 bp | GGTAGGGGCTGGCGTAGCCGTAGTCGGCATAAGCCTTaGCCGGGTAGCCGGCTGCGGAGCCGTTCACGCCGT | + |
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Preference number: 6 (lower is better) Translates to: GRGWRSRSRHKP*PGSRLRSRSRR Trigger: ACGGCGTGAACGGCTCCGCAGCCGGCTACCCGGCCAAGGCTTATGCCGACTACGGCTACGCCAGCCCCTACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CCA 72 bp | CGCGGTTGTAGGCGCCGCCGTACTGGTGGTAGGGGCTaGCGTAGCCGTAGTCGGCATAAGCCTTGGCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: RGCRRRRTGGRG*RSRSRHKPWPG Trigger: ACCCGGCCAAGGCTTATGCCGACTACGGCTACGCCAGCCCCTACCACCAGTACGGCGGCGCCTACAACCGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS TCA 72 bp | TCGGTGGCCGAGGACTCGGGCAAAGTTGGCGATTCCTaGGACGGGTGGTGCATGGCGGCGGACGTCGGGAAC | + |
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Preference number: 6 (lower is better) Translates to: SVAEDSGKVGDS*DGWCMAADVGN Trigger: GTTCCCGACGTCCGCCGCCATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCCTCGGCCACCGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS GCA 72 bp | GCCGTAGTCGGCATAAGCCTTGGCCGGGTAGCCGGCTaGGGAGCCGTTCACGCCGTGGTACTGGTACTGGTA | + |
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Preference number: 6 (lower is better) Translates to: AVVGISLGRVAG*GAVHAVVLVLV Trigger: TACCAGTACCAGTACCACGGCGTGAACGGCTCCGCAGCCGGCTACCCGGCCAAGGCTTATGCCGACTACGGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CCA 72 bp | GGGTGGTGCATGGCGGCGGACGTCGGGAACGGAGCTTaGAAGTCGCCGGATCGGATGCTTGGGACTCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: GWCMAADVGNGA*KSPDRMLGTLL Trigger: CAGAAGAGTCCCAAGCATCCGATCCGGCGACTTCCAAGCTCCGTTCCCGACGTCCGCCGCCATGCACCACCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CCA 72 bp | CGGGCAAAGTTGGCGATTCCTGAGACGGGTGGTGCATaGCGGCGGACGTCGGGAACGGAGCTTGGAAGTCGC | + |
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Preference number: 6 (lower is better) Translates to: RAKLAIPETGGA*RRTSGTELGSR Trigger: GCGACTTCCAAGCTCCGTTCCCGACGTCCGCCGCCATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CCA 72 bp | GGGCGGCCCCCGCGGGACTGTAGTAGTCAGAATCGGTaGCCGAGGACTCGGGCAAAGTTGGCGATTCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: GRPPRDCSSQNR*PRTRAKLAIPE Trigger: CTCAGGAATCGCCAACTTTGCCCGAGTCCTCGGCCACCGATTCTGACTACTACAGTCCCGCGGGGGCCGCCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CAA 72 bp | CGGGTGGTGCATGGCGGCGGACGTCGGGAACGGAGCTaGGAAGTCGCCGGATCGGATGCTTGGGACTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RVVHGGGRRERS*EVAGSDAWDSS Trigger: AGAAGAGTCCCAAGCATCCGATCCGGCGACTTCCAAGCTCCGTTCCCGACGTCCGCCGCCATGCACCACCCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CAA 90 bp | CGGGACTGTAGTAGTCAGAATCGGTGGCCGAGGACTCGGGCAAAGTaGGCGATTCCTGAGACGGGTGGTGCATGGCGGCGGACGTCGGGA | + |
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Preference number: 6 (lower is better) Translates to: RDCSSQNRWPRTRAK*AIPETGGAWRRTSG Trigger: TCCCGACGTCCGCCGCCATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCCTCGGCCACCGATTCTGACTACTACAGTCCCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CCA 72 bp | GTAGTCAGAATCGGTGGCCGAGGACTCGGGCAAAGTTaGCGATTCCTGAGACGGGTGGTGCATGGCGGCGGA | + |
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Preference number: 6 (lower is better) Translates to: VVRIGGRGLGQS*RFLRRVVHGGG Trigger: TCCGCCGCCATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCCTCGGCCACCGATTCTGACTAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CAA 72 bp | AGTAGTCAGAATCGGTGGCCGAGGACTCGGGCAAAGTaGGCGATTCCTGAGACGGGTGGTGCATGGCGGCGG | + |
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Preference number: 6 (lower is better) Translates to: SSQNRWPRTRAK*AIPETGGAWRR Trigger: CCGCCGCCATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCCTCGGCCACCGATTCTGACTACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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| CDS CAA 90 bp | TTCCTGAGACGGGTGGTGCATGGCGGCGGACGTCGGGAACGGAGCTaGGAAGTCGCCGGATCGGATGCTTGGGACTCTTCTGTCAAACAC | + |
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Preference number: 6 (lower is better) Translates to: FLRRVVHGGGRRERS*EVAGSDAWDSSVKH Trigger: GTGTTTGACAGAAGAGTCCCAAGCATCCGATCCGGCGACTTCCAAGCTCCGTTCCCGACGTCCGCCGCCATGCACCACCCGTCTCAGGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052609.9 ENSMUST00000142635.2 |
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