RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DLL3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000003436

Ensembl transcript IDs: ENSMUST00000108315.4

Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp ATGCCAGCACTTAGGGGGCAGAAGCAGGTGGATCTCTGTGAGTTCGAGGCCAGCGTTGCAGGGGGAGCGTaGGGTCCCGAGGCCTGGGCC +
Preference number: 4 (lower is better)
Translates to: MPALRGQKQVDLCEFEASVAGGA*GPEAWA
Trigger: GGCCCAGGCCTCGGGACCCCACGCTCCCCCTGCAAC...GCTGGCCTCGAACTCACAGAGATCCACCTGCTTCTGCCCCCTAAGTGCTGGCAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR TCA 90 bp TTCGAGGCCAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGACGAGGGGGCACTGCGTaGGCGGCACAGGCGCGCGCA +
Preference number: 4 (lower is better)
Translates to: FEASLVYRVLGWPGLLQRRGGTA*AAQARA
Trigger: TGCGCGCGCCTGTGCCGCTCACGCAGTGCCCCCTCG...TCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTGGCCTCGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR GCA 90 bp ATGCCAGCACTTAGGGGGCAGAAGCAGGTGGATCTCTGTGAGTTCGAGGCCAGCAAGGGCCTCGGGCGTTaGAGGGGGAGCGTGGGGTCC +
Preference number: 4 (lower is better)
Translates to: MPALRGQKQVDLCEFEASKGLGR*RGSVGS
Trigger: GGACCCCACGCTCCCCCTGCAACGCCCGAGGCCCTT...GCTGGCCTCGAACTCACAGAGATCCACCTGCTTCTGCCCCCTAAGTGCTGGCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR GCA 90 bp ATGCCAGCACTTAGGGGGCAGAAGCAGGTGGATCTCTGTGAGTTCGAGGCCAGCACTCCCATGTGCCTGTaGGCTGCACATCGCGGGCCC +
Preference number: 4 (lower is better)
Translates to: MPALRGQKQVDLCEFEASTPMCL*AAHRGP
Trigger: GGGCCCGCGATGTGCAGCGCACAGGCACATGGGAGT...GCTGGCCTCGAACTCACAGAGATCCACCTGCTTCTGCCCCCTAAGTGCTGGCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR TCA 90 bp ATGCCAGCACTTAGGGGGCAGAAGCAGGTGGATCTCTGTGAGTTCGAGGCCAGCCACACAAGCCGCCATTaGAGCAGGGTCCATCTGCGC +
Preference number: 4 (lower is better)
Translates to: MPALRGQKQVDLCEFEASHTSRH*SRVHLR
Trigger: GCGCAGATGGACCCTGCTTCAATGGCGGCTTGTGTG...GCTGGCCTCGAACTCACAGAGATCCACCTGCTTCTGCCCCCTAAGTGCTGGCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR TCA 90 bp TTCGAGGCCAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGAGTCCATCTGCGCACGTaGCCCCGCTCACCTCACATC +
Preference number: 4 (lower is better)
Translates to: FEASLVYRVLGWPGLLQRVHLRT*PRSPHI
Trigger: GATGTGAGGTGAGCGGGGTCACGTGCGCAGATGGAC...TCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTGGCCTCGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR TCA 90 bp GTTCGAGGCCAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGCAGAGGCCGCCATTCTaGCATGGCTGCAGGCTACAG +
Preference number: 4 (lower is better)
Translates to: VRGQPGLQSSRLARAFTEQRPPF*HGCRLQ
Trigger: CTGTAGCCTGCAGCCATGTCAGAATGGCGGCCTCTG...CTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTGGCCTCGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp TTCGAGGCCAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGAGCACTCGTCTGGGAATaGCGTGCAGGGTCGCAGTCC +
Preference number: 4 (lower is better)
Translates to: FEASLVYRVLGWPGLLQRALVWE*RAGSQS
Trigger: GGACTGCGACCCTGCACGCCATTCCCAGACGAGTGC...TCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTGGCCTCGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR GCA 90 bp CAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGAGGAAACTCGAAGCAGGGTCCATCTaGGCACGTGACCCCGCTCAC +
Preference number: 4 (lower is better)
Translates to: QPGLQSSRLARAFTERKLEAGSI*ARDPAH
Trigger: GTGAGCGGGGTCACGTGCGCAGATGGACCCTGCTTC...GAGTTTCCTCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp TTCGAGGCCAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGAGCCGCCATTCTGACATaGCTGCAGGCTACAGCGGTC +
Preference number: 4 (lower is better)
Translates to: FEASLVYRVLGWPGLLQRAAILT*LQATAV
Trigger: GACCGCTGTAGCCTGCAGCCATGTCAGAATGGCGGC...TCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTGGCCTCGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp TTCGAGGCCAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGACAGAAGAAAGCGCTGTaGATCCGCCTGCCTCAGGCC +
Preference number: 4 (lower is better)
Translates to: FEASLVYRVLGWPGLLQRQKKAL*IRLPQA
Trigger: GGCCTGAGGCAGGCGGATCCACAGCGCTTTCTTCTG...TCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTGGCCTCGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR TCA 90 bp TTCGAGGCCAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGACCAGCTGGCAGTGCCTaGGGAAGAAGAAAAGCCAGG +
Preference number: 4 (lower is better)
Translates to: FEASLVYRVLGWPGLLQRPAGSA*GRRKAR
Trigger: CCTGGCTTTTCTTCTTCCTCAGGCACTGCCAGCTGG...TCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTGGCCTCGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp TTCGAGGCCAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGAGCCCCCATTGGCACATaGGTTCCCATCACAAGGTCC +
Preference number: 4 (lower is better)
Translates to: FEASLVYRVLGWPGLLQRAPIGT*VPITRS
Trigger: GGACCTTGTGATGGGAACCCATGTGCCAATGGGGGC...TCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTGGCCTCGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp ATGCCAGCACTTAGGGGGCAGAAGCAGGTGGATCTCTGTGAGTTCGAGGCCAGCGCCTTGGAAACCAGGTaGGCAATGACAGACATAGGC +
Preference number: 4 (lower is better)
Translates to: MPALRGQKQVDLCEFEASALETR*AMTDIG
Trigger: GCCTATGTCTGTCATTGCCCACCTGGTTTCCAAGGC...GCTGGCCTCGAACTCACAGAGATCCACCTGCTTCTGCCCCCTAAGTGCTGGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR GCA 90 bp GAGAGGAAACTCTATCCTGGGAAAATAAAAAGTTCTCAGCCTGATGTGGTTGAGCAGTCGTCCAGGTCGTaGTCGCAGCGCGGCCCGGCG +
Preference number: 4 (lower is better)
Translates to: ERKLYPGKIKSSQPDVVEQSSRS*SQRGPA
Trigger: CGCCGGGCCGCGCTGCGAGCACGACCTGGACGACTG...CTCAACCACATCAGGCTGAGAACTTTTTATTTTCCCAGGATAGAGTTTCCTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp CAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGAGGAAACTCAGTTCAGGCAGCTACTaGTGGAGACAGGGACCGTGC +
Preference number: 4 (lower is better)
Translates to: QPGLQSSRLARAFTERKLSSGSY*WRQGPC
Trigger: GCACGGTCCCTGTCTCCACCAGTAGCTGCCTGAACT...GAGTTTCCTCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR TCA 90 bp CAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGAGGAAACTCGTAACCTCAGGTTGTTaGGTGCATCCGGGAGCGTGT +
Preference number: 4 (lower is better)
Translates to: QPGLQSSRLARAFTERKLVTSGC*VHPGAC
Trigger: ACACGCTCCCGGATGCACTCAACAACCTGAGGTTAC...GAGTTTCCTCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp GTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGAGGAAACTCTATCCTGCCCGAGGCCTGGGCCTaGCCCGAAAGAATGAATTTG +
Preference number: 4 (lower is better)
Translates to: VYRVLGWPGLLQRGNSILPEAWA*PERMNL
Trigger: CAAATTCATTCTTTCGGGCCAGGCCCAGGCCTCGGG...CAGGATAGAGTTTCCTCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp GGGGAGGTAGAGATTGGACACCACAAAGTAAATAAAATCATTCAGGCTCCATCTGCATCCGGGAGCGTGTaGACCGAAGGCTCCCGGGTC +
Preference number: 4 (lower is better)
Translates to: GEVEIGHHKVNKIIQAPSASGSV*TEGSRV
Trigger: GACCCGGGAGCCTTCGGTCCACACGCTCCCGGATGC...AGATGGAGCCTGAATGATTTTATTTACTTTGTGGTGTCCAATCTCTACCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR TCA 90 bp GAGAGGAAACTCTATCCTGGGAAAATAAAAAGTTCTCAGCCTGATGTGGTTGAGGCTTCAGGCAGACCCTaGAGAAGAGGCGGCAAGGGC +
Preference number: 4 (lower is better)
Translates to: ERKLYPGKIKSSQPDVVEASGRP*RRGGKG
Trigger: GCCCTTGCCGCCTCTTCTTCAGGGTCTGCCTGAAGC...CTCAACCACATCAGGCTGAGAACTTTTTATTTTCCCAGGATAGAGTTTCCTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp AAAAGTTCTCAGCCTGATGTGGTTGAGCAAAATAAGAACCTTTATAGATGTCTCCGGCAGCGCAACGCGTaGCCCAGGTCCAGGCAGAGG +
Preference number: 4 (lower is better)
Translates to: KSSQPDVVEQNKNLYRCLRQRNA*PRSRQR
Trigger: CCTCTGCCTGGACCTGGGCCACGCGTTGCGCTGCCG...GAGACATCTATAAAGGTTCTTATTTTGCTCAACCACATCAGGCTGAGAACTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR TCA 90 bp GAGAGGAAACTCTATCCTGGGAAAATAAAAAGTTCTCAGCCTGATGTGGTTGAGCTCTCCAGGTTTCAATaGCGAGGGAGAAGGTGCCCG +
Preference number: 4 (lower is better)
Translates to: ERKLYPGKIKSSQPDVVELSRFQ*RGRRCP
Trigger: CGGGCACCTTCTCCCTCGTCATTGAAACCTGGAGAG...CTCAACCACATCAGGCTGAGAACTTTTTATTTTCCCAGGATAGAGTTTCCTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR GCA 90 bp GAGATTGGACACCACAAAGTAAATAAAATCATTCAGGCTCCATCTCCAGGCGATCCTCAGGTTGTTGAGTaGATCCGGGAGCGTGTGGAC +
Preference number: 4 (lower is better)
Translates to: EIGHHKVNKIIQAPSPGDPQVVE*IRERVD
Trigger: GTCCACACGCTCCCGGATGCACTCAACAACCTGAGG...ATCGCCTGGAGATGGAGCCTGAATGATTTTATTTACTTTGTGGTGTCCAATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR GCA 90 bp GAGGTAGAGATTGGACACCACAAAGTAAATAAAATCATTCAGGCTCCATCTCCAGACACCAGCTGGCAGTaGCTGAGGAAGAAGAAAAGC +
Preference number: 4 (lower is better)
Translates to: EVEIGHHKVNKIIQAPSPDTSWQ*LRKKKS
Trigger: GCTTTTCTTCTTCCTCAGGCACTGCCAGCTGGTGTC...TGGAGATGGAGCCTGAATGATTTTATTTACTTTGTGGTGTCCAATCTCTACCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR TCA 90 bp GAGAGGAAACTCTATCCTGGGAAAATAAAAAGTTCTCAGCCTGATGTGGTTGAGCCTGGCCCGAAAGAATaGATTTGTAGCTCGAAGACA +
Preference number: 4 (lower is better)
Translates to: ERKLYPGKIKSSQPDVVEPGPKE*ICSSKT
Trigger: TGTCTTCGAGCTACAAATTCATTCTTTCGGGCCAGG...CTCAACCACATCAGGCTGAGAACTTTTTATTTTCCCAGGATAGAGTTTCCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp AAAAGTTCTCAGCCTGATGTGGTTGAGCAAAATAAGAACCTTTATAGATGTCTCTACAGCTGCCCCCATTaGCACATGGGTTCCCATCAC +
Preference number: 4 (lower is better)
Translates to: KSSQPDVVEQNKNLYRCLYSCPH*HMGSHH
Trigger: GTGATGGGAACCCATGTGCCAATGGGGGCAGCTGTA...GAGACATCTATAAAGGTTCTTATTTTGCTCAACCACATCAGGCTGAGAACTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR GCA 90 bp AAAAGTTCTCAGCCTGATGTGGTTGAGCAAAATAAGAACCTTTATAGATGTCTCAGGTTTCACTACAGCTaGCCCCATTGGCACATGGGT +
Preference number: 4 (lower is better)
Translates to: KSSQPDVVEQNKNLYRCLRFHYS*PHWHMG
Trigger: ACCCATGTGCCAATGGGGGCAGCTGTAGTGAAACCT...GAGACATCTATAAAGGTTCTTATTTTGCTCAACCACATCAGGCTGAGAACTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CCA 90 bp AAAAGTTCTCAGCCTGATGTGGTTGAGCAAAATAAGAACCTTTATAGATGTCTCATAAATGGAAGGGGCTaGTATGACATAAATGGATCT +
Preference number: 4 (lower is better)
Translates to: KSSQPDVVEQNKNLYRCLINGRG*YDINGS
Trigger: AGATCCATTTATGTCATACCAGCCCCTTCCATTTAT...GAGACATCTATAAAGGTTCTTATTTTGCTCAACCACATCAGGCTGAGAACTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 90 bp ATGGCGTGCAGGGTCGCAGTCCCGGGCCACACCGCGAGGGGGCACTaGGTGAGCGGCACAGGCGCGCGCAGGCGGCCCCGACGGCGGGCG +
Preference number: 5 (lower is better)
Translates to: MACRVAVPGHTARGH*VSGTGARRRPRRRA
Trigger: CGCCCGCCGTCGGGGCCGCCTGCGCGCGCCTGTGCCGCTCACGCAGTGCCCCCTCGCGGTGTGGCCCGGGACTGCGACCCTGCACGCCAT
80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 90 bp CGGGCGGCTCGCACCGCGCGCGGTAGGAGAAGTGCAACTCCCATGTaGCTGTGCGCTGCACATCGCGGGCCCACGGGCCCCCAGCCGCCA +
Preference number: 5 (lower is better)
Translates to: RAARTARGRRSATPM*LCAAHRGPTGPQPP
Trigger: TGGCGGCTGGGGGCCCGTGGGCCCGCGATGTGCAGCGCACAGGCACATGGGAGTTGCACTTCTCCTACCGCGCGCGGTGCGAGCCGCCCG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 90 bp GCTCGCACCGCGCGCGGTAGGAGAAGTGCAACTCCCATGTGCCTGTaGGCTGCACATCGCGGGCCCACGGGCCCCCAGCCGCCAGGCGTC +
Preference number: 5 (lower is better)
Translates to: ARTARGRRSATPMCL*AAHRGPTGPQPPGV
Trigger: GACGCCTGGCGGCTGGGGGCCCGTGGGCCCGCGATGTGCAGCGCACAGGCACATGGGAGTTGCACTTCTCCTACCGCGCGCGGTGCGAGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 90 bp GGGGCTGCAGCCTGGTCGACACACAGACGGGGCTTCGCACTCGTCTaGGAATGGCGTGCAGGGTCGCAGTCCCGGGCCACACCGCGAGGG +
Preference number: 5 (lower is better)
Translates to: GAAAWSTHRRGFALV*EWRAGSQSRATPRG
Trigger: CCCTCGCGGTGTGGCCCGGGACTGCGACCCTGCACGCCATTCCCAGACGAGTGCGAAGCCCCGTCTGTGTGTCGACCAGGCTGCAGCCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS TCA 90 bp GGGACTCGGTGGCCTCCTGGGAGACTCCGGGCTTCAGGCAGACCCTaGAGAAGAGGCGGCAAGGGCCTCGGGCGTTGCAGGGGGAGCGTG +
Preference number: 5 (lower is better)
Translates to: GTRWPPGRLRASGRP*RRGGKGLGRCRGSV
Trigger: CACGCTCCCCCTGCAACGCCCGAGGCCCTTGCCGCCTCTTCTTCAGGGTCTGCCTGAAGCCCGGAGTCTCCCAGGAGGCCACCGAGTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 90 bp CTCTCCGGGGTGCTCCGTATAGACCGGGACGCTCGTGCTCAGTGCTaGGCCCAGGGCGCACAGGGACTCGGTGGCCTCCTGGGAGACTCC +
Preference number: 5 (lower is better)
Translates to: LSGVLRIDRDARAQC*AQGAQGLGGLLGDS
Trigger: GGAGTCTCCCAGGAGGCCACCGAGTCCCTGTGCGCCCTGGGCGCAGCACTGAGCACGAGCGTCCCGGTCTATACGGAGCACCCCGGAGAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 90 bp CTGGTCGACACACAGACGGGGCTTCGCACTCGTCTGGGAATGGCGTaGAGGGTCGCAGTCCCGGGCCACACCGCGAGGGGGCACTGCGTG +
Preference number: 5 (lower is better)
Translates to: LVDTQTGLRTRLGMA*RVAVPGHTARGHCV
Trigger: CACGCAGTGCCCCCTCGCGGTGTGGCCCGGGACTGCGACCCTGCACGCCATTCCCAGACGAGTGCGAAGCCCCGTCTGTGTGTCGACCAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 90 bp GCAGCCTGGTCGACACACAGACGGGGCTTCGCACTCGTCTGGGAATaGCGTGCAGGGTCGCAGTCCCGGGCCACACCGCGAGGGGGCACT +
Preference number: 5 (lower is better)
Translates to: AAWSTHRRGFALVWE*RAGSQSRATPRGGT
Trigger: AGTGCCCCCTCGCGGTGTGGCCCGGGACTGCGACCCTGCACGCCATTCCCAGACGAGTGCGAAGCCCCGTCTGTGTGTCGACCAGGCTGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS TCA 90 bp GAAGGGCACACGTACGAGGCCATCAGGCAGCGGCAGGGCAGCCGCTaGCTCTCCGGGGTGCTCCGTATAGACCGGGACGCTCGTGCTCAG +
Preference number: 5 (lower is better)
Translates to: EGHTYEAIRQRQGSR*LSGVLRIDRDARAQ
Trigger: CTGAGCACGAGCGTCCCGGTCTATACGGAGCACCCCGGAGAGTCAGCGGCTGCCCTGCCGCTGCCTGATGGCCTCGTACGTGTGCCCTTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 90 bp CAGTGCTGGCAGGACCAGGAACCCTGGAGTTCAGGCAGCTACTGGTaGAGACAGGGACCGTGCAGAGGGGTCCAGTCCAGCCCTCCAGGC +
Preference number: 5 (lower is better)
Translates to: QCWQDQEPWSSGSYW*RQGPCRGVQSSPPG
Trigger: GCCTGGAGGGCTGGACTGGACCCCTCTGCACGGTCCCTGTCTCCACCAGTAGCTGCCTGAACTCCAGGGTTCCTGGTCCTGCCAGCACTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS TCA 90 bp ACGAACTGGGGCCATCCCCAGCACCGTCTTGTAACCTCAGGTTGTTaGGTGCATCCGGGAGCGTGTGGACCGAAGGCTCCCGGGTCCCAG +
Preference number: 5 (lower is better)
Translates to: TNWGHPQHRLVTSGC*VHPGACGPKAPGSQ
Trigger: CTGGGACCCGGGAGCCTTCGGTCCACACGCTCCCGGATGCACTCAACAACCTGAGGTTACAAGACGGTGCTGGGGATGGCCCCAGTTCGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 90 bp ATCCAGTGCTGGCAGGACCAGGAACCCTGGAGTTCAGGCAGCTACTaGTGGAGACAGGGACCGTGCAGAGGGGTCCAGTCCAGCCCTCCA +
Preference number: 5 (lower is better)
Translates to: IQCWQDQEPWSSGSY*WRQGPCRGVQSSPP
Trigger: TGGAGGGCTGGACTGGACCCCTCTGCACGGTCCCTGTCTCCACCAGTAGCTGCCTGAACTCCAGGGTTCCTGGTCCTGCCAGCACTGGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 90 bp GCATTCATCAGGCTCTTCACAGTAGCCGTGCTCGGGGCTGCAGCCTaGTCGACACACAGACGGGGCTTCGCACTCGTCTGGGAATGGCGT +
Preference number: 5 (lower is better)
Translates to: AFIRLFTVAVLGAAA*STHRRGFALVWEWR
Trigger: ACGCCATTCCCAGACGAGTGCGAAGCCCCGTCTGTGTGTCGACCAGGCTGCAGCCCCGAGCACGGCTACTGTGAAGAGCCTGATGAATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 90 bp GCACCGTCTTGTAACCTCAGGTTGTTGAGTGCATCCGGGAGCGTGTaGACCGAAGGCTCCCGGGTCCCAGAAAGCAGGCGAGTCCCGGTA +
Preference number: 5 (lower is better)
Translates to: APSCNLRLLSASGSV*TEGSRVPESRRVPV
Trigger: TACCGGGACTCGCCTGCTTTCTGGGACCCGGGAGCCTTCGGTCCACACGCTCCCGGATGCACTCAACAACCTGAGGTTACAAGACGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 90 bp CCCGGGGACAGGCACATTCAAAGGAGCCAGAGGTTTCACTACAGCTaGCCCCATTGGCACATGGGTTCCCATCACAAGGTCCAGGCCCAG +
Preference number: 5 (lower is better)
Translates to: PGDRHIQRSQRFHYS*PHWHMGSHHKVQAQ
Trigger: CTGGGCCTGGACCTTGTGATGGGAACCCATGTGCCAATGGGGGCAGCTGTAGTGAAACCTCTGGCTCCTTTGAATGTGCCTGTCCCCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 90 bp ATGGGTTCCCATCACAAGGTCCAGGCCCAGGTAAAAGGCATCCAGTaGTGGCAGGACCAGGAACCCTGGAGTTCAGGCAGCTACTGGTGG +
Preference number: 5 (lower is better)
Translates to: MGSHHKVQAQVKGIQ*WQDQEPWSSGSYWW
Trigger: CCACCAGTAGCTGCCTGAACTCCAGGGTTCCTGGTCCTGCCAGCACTGGATGCCTTTTACCTGGGCCTGGACCTTGTGATGGGAACCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 90 bp ATCTTCACCGCCAACACACAAGCCGCCATTGAAGCAGGGTCCATCTaGGCACGTGACCCCGCTCACCTCACATCGAAGCCCGTAGAATCC +
Preference number: 5 (lower is better)
Translates to: IFTANTQAAIEAGSI*ARDPAHLTSKPVES
Trigger: GGATTCTACGGGCTTCGATGTGAGGTGAGCGGGGTCACGTGCGCAGATGGACCCTGCTTCAATGGCGGCTTGTGTGTTGGCGGTGAAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CAA 90 bp TTCGAGGCCAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGAACACACAAGCCGCCATaGAAGCAGGGTCCATCTGCG +
Preference number: 5 (lower is better)
Translates to: FEASLVYRVLGWPGLLQRTHKPP*KQGPSA
Trigger: CGCAGATGGACCCTGCTTCAATGGCGGCTTGTGTGT...TCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTGGCCTCGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 90 bp AGGCACATTCAAAGGAGCCAGAGGTTTCACTACAGCTGCCCCCATTaGCACATGGGTTCCCATCACAAGGTCCAGGCCCAGGTAAAAGGC +
Preference number: 5 (lower is better)
Translates to: RHIQRSQRFHYSCPH*HMGSHHKVQAQVKG
Trigger: GCCTTTTACCTGGGCCTGGACCTTGTGATGGGAACCCATGTGCCAATGGGGGCAGCTGTAGTGAAACCTCTGGCTCCTTTGAATGTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 90 bp ACAGCGGTCCACCCTCTTCTCACAGTTAGAGCCTTGGAAACCAGGTaGGCAATGACAGACATAGGCAGAGTCAGGATCTTCACCGCCAAC +
Preference number: 5 (lower is better)
Translates to: TAVHPLLTVRALETR*AMTDIGRVRIFTAN
Trigger: GTTGGCGGTGAAGATCCTGACTCTGCCTATGTCTGTCATTGCCCACCTGGTTTCCAAGGCTCTAACTGTGAGAAGAGGGTGGACCGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CAA 90 bp CAGCCTGGTCTACAGAGTTCTAGGCTGGCCAGGGCTTTTACAGAGAGGAAACTCTGTAACCTCAGGTTGTaGAGTGCATCCGGGAGCGTG +
Preference number: 5 (lower is better)
Translates to: QPGLQSSRLARAFTERKLCNLRL*SASGSV
Trigger: CACGCTCCCGGATGCACTCAACAACCTGAGGTTACA...GAGTTTCCTCTCTGTAAAAGCCCTGGCCAGCCTAGAACTCTGTAGACCAGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CAA 90 bp TGGTGCACGCCTTTAATGCCAGCACTTAGGGGGCAGAAGCAGGTGGATCTCTGTTCTTGTAACCTCAGGTaGTTGAGTGCATCCGGGAGC +
Preference number: 5 (lower is better)
Translates to: WCTPLMPALRGQKQVDLCSCNLR*LSASGS
Trigger: GCTCCCGGATGCACTCAACAACCTGAGGTTACAAGA...ACAGAGATCCACCTGCTTCTGCCCCCTAAGTGCTGGCATTAAAGGCGTGCACCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS-3UTR CAA 90 bp GGGGAGGTAGAGATTGGACACCACAAAGTAAATAAAATCATTCAGGCTCCATCTCTACAGCTGCCCCCATaGGCACATGGGTTCCCATCA +
Preference number: 5 (lower is better)
Translates to: GEVEIGHHKVNKIIQAPSLQLPP*AHGFPS
Trigger: TGATGGGAACCCATGTGCCAATGGGGGCAGCTGTAG...AGATGGAGCCTGAATGATTTTATTTACTTTGTGGTGTCCAATCTCTACCTCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp AGGAGCAGCGGCGCGAGCCGCCGCCCTCCACGCACGTaGCGCCGTTGGCACAGGCGCGGCCGGCGCAGTCGT +
Preference number: 6 (lower is better)
Translates to: RSSGASRRPPRT*RRWHRRGRRSR
Trigger: ACGACTGCGCCGGCCGCGCCTGTGCCAACGGCGGCACGTGCGTGGAGGGCGGCGGCTCGCGCCGCTGCTCCT
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp AAGGCGGGAGGCAGAAGAAAGCGCTGTGGATCCGCCTaGCTCAGGCCCCGCGGGGCGGCGGGCACCGCGTCC +
Preference number: 6 (lower is better)
Translates to: KAGGRRKRCGSA*LRPRGAAGTAS
Trigger: GGACGCGGTGCCCGCCGCCCCGCGGGGCCTGAGGCAGGCGGATCCACAGCGCTTTCTTCTGCCTCCCGCCTT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp GCGCGCGGTAGGAGAAGTGCAACTCCCATGTGCCTGTaGGCTGCACATCGCGGGCCCACGGGCCCCCAGCCG +
Preference number: 6 (lower is better)
Translates to: ARGRRSATPMCL*AAHRGPTGPQP
Trigger: CGGCTGGGGGCCCGTGGGCCCGCGATGTGCAGCGCACAGGCACATGGGAGTTGCACTTCTCCTACCGCGCGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp CGCACCGCGCGCGGTAGGAGAAGTGCAACTCCCATGTaGCTGTGCGCTGCACATCGCGGGCCCACGGGCCCC +
Preference number: 6 (lower is better)
Translates to: RTARGRRSATPM*LCAAHRGPTGP
Trigger: GGGGCCCGTGGGCCCGCGATGTGCAGCGCACAGGCACATGGGAGTTGCACTTCTCCTACCGCGCGCGGTGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp GGGGTGCTCCGTATAGACCGGGACGCTCGTGCTCAGTaGTGCGCCCAGGGCGCACAGGGACTCGGTGGCCTC +
Preference number: 6 (lower is better)
Translates to: GVLRIDRDARAQ*CAQGAQGLGGL
Trigger: GAGGCCACCGAGTCCCTGTGCGCCCTGGGCGCAGCACTGAGCACGAGCGTCCCGGTCTATACGGAGCACCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp ACACAGACGGGGCTTCGCACTCGTCTGGGAATGGCGTaGAGGGTCGCAGTCCCGGGCCACACCGCGAGGGGG +
Preference number: 6 (lower is better)
Translates to: TQTGLRTRLGMA*RVAVPGHTARG
Trigger: CCCCCTCGCGGTGTGGCCCGGGACTGCGACCCTGCACGCCATTCCCAGACGAGTGCGAAGCCCCGTCTGTGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 72 bp TGCTCAGTGCTGCGCCCAGGGCGCACAGGGACTCGGTaGCCTCCTGGGAGACTCCGGGCTTCAGGCAGACCC +
Preference number: 6 (lower is better)
Translates to: CSVLRPGRTGTR*PPGRLRASGRP
Trigger: GGGTCTGCCTGAAGCCCGGAGTCTCCCAGGAGGCCACCGAGTCCCTGTGCGCCCTGGGCGCAGCACTGAGCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp GTGCTCCGTATAGACCGGGACGCTCGTGCTCAGTGCTaGGCCCAGGGCGCACAGGGACTCGGTGGCCTCCTG +
Preference number: 6 (lower is better)
Translates to: VLRIDRDARAQC*AQGAQGLGGLL
Trigger: CAGGAGGCCACCGAGTCCCTGTGCGCCCTGGGCGCAGCACTGAGCACGAGCGTCCCGGTCTATACGGAGCAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp ACTCTCCGGGGTGCTCCGTATAGACCGGGACGCTCGTaGTCAGTGCTGCGCCCAGGGCGCACAGGGACTCGG +
Preference number: 6 (lower is better)
Translates to: TLRGAPYRPGRS*SVLRPGRTGTR
Trigger: CCGAGTCCCTGTGCGCCCTGGGCGCAGCACTGAGCACGAGCGTCCCGGTCTATACGGAGCACCCCGGAGAGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS TCA 72 bp TGGCCTCCTGGGAGACTCCGGGCTTCAGGCAGACCCTaGAGAAGAGGCGGCAAGGGCCTCGGGCGTTGCAGG +
Preference number: 6 (lower is better)
Translates to: WPPGRLRASGRP*RRGGKGLGRCR
Trigger: CCTGCAACGCCCGAGGCCCTTGCCGCCTCTTCTTCAGGGTCTGCCTGAAGCCCGGAGTCTCCCAGGAGGCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS TCA 72 bp ACGTACGAGGCCATCAGGCAGCGGCAGGGCAGCCGCTaGCTCTCCGGGGTGCTCCGTATAGACCGGGACGCT +
Preference number: 6 (lower is better)
Translates to: TYEAIRQRQGSR*LSGVLRIDRDA
Trigger: AGCGTCCCGGTCTATACGGAGCACCCCGGAGAGTCAGCGGCTGCCCTGCCGCTGCCTGATGGCCTCGTACGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 72 bp TCGACACACAGACGGGGCTTCGCACTCGTCTGGGAATaGCGTGCAGGGTCGCAGTCCCGGGCCACACCGCGA +
Preference number: 6 (lower is better)
Translates to: STHRRGFALVWE*RAGSQSRATPR
Trigger: TCGCGGTGTGGCCCGGGACTGCGACCCTGCACGCCATTCCCAGACGAGTGCGAAGCCCCGTCTGTGTGTCGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 72 bp GCCTGGTCGACACACAGACGGGGCTTCGCACTCGTCTaGGAATGGCGTGCAGGGTCGCAGTCCCGGGCCACA +
Preference number: 6 (lower is better)
Translates to: AWSTHRRGFALV*EWRAGSQSRAT
Trigger: TGTGGCCCGGGACTGCGACCCTGCACGCCATTCCCAGACGAGTGCGAAGCCCCGTCTGTGTGTCGACCAGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 72 bp AGGCTCTTCACAGTAGCCGTGCTCGGGGCTGCAGCCTaGTCGACACACAGACGGGGCTTCGCACTCGTCTGG +
Preference number: 6 (lower is better)
Translates to: RLFTVAVLGAAA*STHRRGFALVW
Trigger: CCAGACGAGTGCGAAGCCCCGTCTGTGTGTCGACCAGGCTGCAGCCCCGAGCACGGCTACTGTGAAGAGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CAA 90 bp GCCGACGAACTGGGGCCATCCCCAGCACCGTCTTGTAACCTCAGGTaGTTGAGTGCATCCGGGAGCGTGTGGACCGAAGGCTCCCGGGTC +
Preference number: 6 (lower is better)
Translates to: ADELGPSPAPSCNLR*LSASGSVWTEGSRV
Trigger: GACCCGGGAGCCTTCGGTCCACACGCTCCCGGATGCACTCAACAACCTGAGGTTACAAGACGGTGCTGGGGATGGCCCCAGTTCGTCGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 72 bp TGGCAGGACCAGGAACCCTGGAGTTCAGGCAGCTACTaGTGGAGACAGGGACCGTGCAGAGGGGTCCAGTCC +
Preference number: 6 (lower is better)
Translates to: WQDQEPWSSGSY*WRQGPCRGVQS
Trigger: GGACTGGACCCCTCTGCACGGTCCCTGTCTCCACCAGTAGCTGCCTGAACTCCAGGGTTCCTGGTCCTGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CAA 90 bp GACGAACTGGGGCCATCCCCAGCACCGTCTTGTAACCTCAGGTTGTaGAGTGCATCCGGGAGCGTGTGGACCGAAGGCTCCCGGGTCCCA +
Preference number: 6 (lower is better)
Translates to: DELGPSPAPSCNLRL*SASGSVWTEGSRVP
Trigger: TGGGACCCGGGAGCCTTCGGTCCACACGCTCCCGGATGCACTCAACAACCTGAGGTTACAAGACGGTGCTGGGGATGGCCCCAGTTCGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS TCA 72 bp GGCCATCCCCAGCACCGTCTTGTAACCTCAGGTTGTTaGGTGCATCCGGGAGCGTGTGGACCGAAGGCTCCC +
Preference number: 6 (lower is better)
Translates to: GHPQHRLVTSGC*VHPGACGPKAP
Trigger: GGGAGCCTTCGGTCCACACGCTCCCGGATGCACTCAACAACCTGAGGTTACAAGACGGTGCTGGGGATGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp GCCAACACACAAGCCGCCATTGAAGCAGGGTCCATCTaGGCACGTGACCCCGCTCACCTCACATCGAAGCCC +
Preference number: 6 (lower is better)
Translates to: ANTQAAIEAGSI*ARDPAHLTSKP
Trigger: GGGCTTCGATGTGAGGTGAGCGGGGTCACGTGCGCAGATGGACCCTGCTTCAATGGCGGCTTGTGTGTTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CAA 72 bp GGGCCATCCCCAGCACCGTCTTGTAACCTCAGGTTGTaGAGTGCATCCGGGAGCGTGTGGACCGAAGGCTCC +
Preference number: 6 (lower is better)
Translates to: GPSPAPSCNLRL*SASGSVWTEGS
Trigger: GGAGCCTTCGGTCCACACGCTCCCGGATGCACTCAACAACCTGAGGTTACAAGACGGTGCTGGGGATGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CAA 72 bp CTGGGGCCATCCCCAGCACCGTCTTGTAACCTCAGGTaGTTGAGTGCATCCGGGAGCGTGTGGACCGAAGGC +
Preference number: 6 (lower is better)
Translates to: LGPSPAPSCNLR*LSASGSVWTEG
Trigger: GCCTTCGGTCCACACGCTCCCGGATGCACTCAACAACCTGAGGTTACAAGACGGTGCTGGGGATGGCCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS TCA 72 bp CAGCATGCTCTCCCAGCTGCTCTCTCCAGGTTTCAATaGCGAGGGAGAAGGTGCCCGGCCAAGCATCGCGGA +
Preference number: 6 (lower is better)
Translates to: QHALPAALSRFQ*RGRRCPAKHRG
Trigger: TCCGCGATGCTTGGCCGGGCACCTTCTCCCTCGTCATTGAAACCTGGAGAGAGCAGCTGGGAGAGCATGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 72 bp TGTAACCTCAGGTTGTTGAGTGCATCCGGGAGCGTGTaGACCGAAGGCTCCCGGGTCCCAGAAAGCAGGCGA +
Preference number: 6 (lower is better)
Translates to: CNLRLLSASGSV*TEGSRVPESRR
Trigger: TCGCCTGCTTTCTGGGACCCGGGAGCCTTCGGTCCACACGCTCCCGGATGCACTCAACAACCTGAGGTTACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CAA 72 bp GAGTCAGGATCTTCACCGCCAACACACAAGCCGCCATaGAAGCAGGGTCCATCTGCGCACGTGACCCCGCTC +
Preference number: 6 (lower is better)
Translates to: ESGSSPPTHKPP*KQGPSAHVTPL
Trigger: GAGCGGGGTCACGTGCGCAGATGGACCCTGCTTCAATGGCGGCTTGTGTGTTGGCGGTGAAGATCCTGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp CATCACAAGGTCCAGGCCCAGGTAAAAGGCATCCAGTaGTGGCAGGACCAGGAACCCTGGAGTTCAGGCAGC +
Preference number: 6 (lower is better)
Translates to: HHKVQAQVKGIQ*WQDQEPWSSGS
Trigger: GCTGCCTGAACTCCAGGGTTCCTGGTCCTGCCAGCACTGGATGCCTTTTACCTGGGCCTGGACCTTGTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 72 bp CACAAGGTCCAGGCCCAGGTAAAAGGCATCCAGTGCTaGCAGGACCAGGAACCCTGGAGTTCAGGCAGCTAC +
Preference number: 6 (lower is better)
Translates to: HKVQAQVKGIQC*QDQEPWSSGSY
Trigger: GTAGCTGCCTGAACTCCAGGGTTCCTGGTCCTGCCAGCACTGGATGCCTTTTACCTGGGCCTGGACCTTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 72 bp CAAAGGAGCCAGAGGTTTCACTACAGCTGCCCCCATTaGCACATGGGTTCCCATCACAAGGTCCAGGCCCAG +
Preference number: 6 (lower is better)
Translates to: QRSQRFHYSCPH*HMGSHHKVQAQ
Trigger: CTGGGCCTGGACCTTGTGATGGGAACCCATGTGCCAATGGGGGCAGCTGTAGTGAAACCTCTGGCTCCTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CAA 72 bp TCAAAGGAGCCAGAGGTTTCACTACAGCTGCCCCCATaGGCACATGGGTTCCCATCACAAGGTCCAGGCCCA +
Preference number: 6 (lower is better)
Translates to: SKEPEVSLQLPP*AHGFPSQGPGP
Trigger: TGGGCCTGGACCTTGTGATGGGAACCCATGTGCCAATGGGGGCAGCTGTAGTGAAACCTCTGGCTCCTTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CAA 90 bp CAGGCACATTCAAAGGAGCCAGAGGTTTCACTACAGCTGCCCCCATaGGCACATGGGTTCCCATCACAAGGTCCAGGCCCAGGTAAAAGG +
Preference number: 6 (lower is better)
Translates to: QAHSKEPEVSLQLPP*AHGFPSQGPGPGKR
Trigger: CCTTTTACCTGGGCCTGGACCTTGTGATGGGAACCCATGTGCCAATGGGGGCAGCTGTAGTGAAACCTCTGGCTCCTTTGAATGTGCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS GCA 72 bp AGGCACATTCAAAGGAGCCAGAGGTTTCACTACAGCTaGCCCCATTGGCACATGGGTTCCCATCACAAGGTC +
Preference number: 6 (lower is better)
Translates to: RHIQRSQRFHYS*PHWHMGSHHKV
Trigger: GACCTTGTGATGGGAACCCATGTGCCAATGGGGGCAGCTGTAGTGAAACCTCTGGCTCCTTTGAATGTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CAA 72 bp GCTACAGCGGTCCACCCTCTTCTCACAGTTAGAGCCTaGGAAACCAGGTGGGCAATGACAGACATAGGCAGA +
Preference number: 6 (lower is better)
Translates to: ATAVHPLLTVRA*ETRWAMTDIGR
Trigger: TCTGCCTATGTCTGTCATTGCCCACCTGGTTTCCAAGGCTCTAACTGTGAGAAGAGGGTGGACCGCTGTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4
CDS CCA 72 bp CACCCTCTTCTCACAGTTAGAGCCTTGGAAACCAGGTaGGCAATGACAGACATAGGCAGAGTCAGGATCTTC +
Preference number: 6 (lower is better)
Translates to: HPLLTVRALETR*AMTDIGRVRIF
Trigger: GAAGATCCTGACTCTGCCTATGTCTGTCATTGCCCACCTGGTTTCCAAGGCTCTAACTGTGAGAAGAGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108315.4