RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DLGAP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042388

Ensembl transcript IDs: ENSMUST00000046659.14, ENSMUST00000106092.2, ENSMUST00000106094.9

Found 300 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGCGGTGCCGGCAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTaGCCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCC +
Preference number: 1 (lower is better)
Translates to: CGAGRAGARSCPRSQ*PRRWVYSTGRKPRA
Trigger: GGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTGCCGGCACCGCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
3UTR-3UTR TCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGTGCCCGCGTTCACAGTaGCCTCGACGCTGGGTGTAC +
Preference number: 2 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRCPRSQ*PRRWVY
Trigger: GTACACCCAGCGTCGAGGTCACTGTGAACGCGGGCA...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
3UTR-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCTGAGGGTGGAGCCCTaGGAAGGTGGGGCGGGCTCC +
Preference number: 2 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPLRVEP*EGGAGS
Trigger: GGAGCCCGCCCCACCTTCCCAGGGCTCCACCCTCAG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
3UTR-3UTR TCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGATGGGAGTTCCAAGTaGGGGGCGCAGGGCGGAGAG +
Preference number: 2 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPDGSSK*GAQGGE
Trigger: CTCTCCGCCCTGCGCCCCTCACTTGGAACTCCCATC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
3UTR-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGTCGGACCAGGAAGATaGGAGTTCCAAGTGAGGGGC +
Preference number: 2 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPVGPGR*EFQVRG
Trigger: GCCCCTCACTTGGAACTCCCATCTTCCTGGTCCGAC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
3UTR TCA 72 bp GGCAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTaGCCTCGACGCTGGGTGTACAGTACGGGTAGAAAA +
Preference number: 3 (lower is better)
Translates to: GRAGARSCPRSQ*PRRWVYSTGRK
Trigger: TTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
3UTR-3UTR CAA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTAAAAAGCCACGAAGCTaGATCCCCACGAAGCCCAGC +
Preference number: 3 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPKKPRS*IPTKPS
Trigger: GCTGGGCTTCGTGGGGATCAAGCTTCGTGGCTTTTT...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGGAGCCGGGCCTCCCTaGGACAGAGGCAGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRGAGPP*DRGRGS
Trigger: GCTGCCCCTGCCTCTGTCTCAGGGAGGCCCGGCTCC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGCGGGCTGGGCGGGGATaGCTGCCTCGGTCGCCATGG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRRAGRG*LPRSPW
Trigger: CCATGGCGACCGAGGCAGCCATCCCCGCCCAGCCCG...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGGGTGGGAGGTGGGGGTaGCTCCAGAGCCTGGACCAG +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAGGRWG*LQSLDQ
Trigger: CTGGTCCAGGCTCTGGAGGCACCCCCACCTCCCACC...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGCCGGGCCGGGCCCTCTaGTGCGGTGAAGCTCTCGTG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRPGRAL*CGEALV
Trigger: CACGAGAGCTTCACCGCAGCAGAGGGCCCGGCCCGG...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGCGCGCTTCCTGCCGCTaGCGGTCCACCGAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRRASCR*RSTESR
Trigger: CCTGGACTCGGTGGACCGGCAGCGGCAGGAAGCGCG...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGGTCAGCAAAGCGGGCTaGGCGGGGATGGCTGCCTCG +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAVSKAG*AGMAAS
Trigger: CGAGGCAGCCATCCCCGCCCAGCCCGCTTTGCTGAC...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGGTCGGGGAGGCTACGTaGACCCCGCTCCATCCAGGA +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAVGEAT*TPLHPG
Trigger: TCCTGGATGGAGCGGGGTTCACGTAGCCTCCCCGAC...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGCTGGGCGGGGATGGCTaGCTCGGTCGCCATGGTAAC +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRALGGDG*LGRHGN
Trigger: GTTACCATGGCGACCGAGGCAGCCATCCCCGCCCAG...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGGTGGGAGGTGGGGGTaGCTCCAGAGCCTGGACCAG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRGGRWG*LQSLDQ
Trigger: CTGGTCCAGGCTCTGGAGGCACCCCCACCTCCCACC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGCGGGGCCCTGGCAGCTaGGCCCACGTCCATATGCTG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRRGPGS*AHVHML
Trigger: CAGCATATGGACGTGGGCCCAGCTGCCAGGGCCCCG...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGAGAAGCGGGGCTCGGTaGAGAAGGCCTCCCTGGAGC +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRARSGAR*RRPPWS
Trigger: GCTCCAGGGAGGCCTTCTCCACCGAGCCCCGCTTCT...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGTGTCGAAGGGGCCCTaGCCGGGGTACATCCTGGGG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRVSKGP*PGYILG
Trigger: CCCCAGGATGTACCCCGGCCAGGGCCCCTTCGACAC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTAATGCGGGGTGGGGCCTaGCTTCCCGGCGGGATGGGG +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVMRGGA*LPGGMG
Trigger: CCCCATCCCGCCGGGAAGCCAGGCCCCACCCCGCAT...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGCCACCTGCACCCCAATaGACGGCCGCCACTTCCGCT +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAPPAPQ*TAATSA
Trigger: AGCGGAAGTGGCGGCCGTCCATTGGGGTGCAGGTGG...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGGAGCCGGGCCTCCCTaGGACAGAGGCAGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGGAGPP*DRGRGS
Trigger: GCTGCCCCTGCCTCTGTCTCAGGGAGGCCCGGCTCC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGGTCGCCCATCCCCCTTaGGGTCCTTGCTCTTGCTCC +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAVAHPP*GPCSCS
Trigger: GGAGCAAGAGCAAGGACCGCAAGGGGGATGGGCGAC...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGGGATCTCCCCATCCTTaGCACCCGTGGGGTAACCCC +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAGSPHP*HPWGNP
Trigger: GGGGTTACCCCACGGGTGGCAAGGATGGGGAGATCC...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGAGCTCCAGGTCTGCCTaGACACCGGCTGTCACGCTG +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRASSRSA*TPAVTL
Trigger: CAGCGTGACAGCCGGTGTGCAGGCAGACCTGGAGCT...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCCGCCAGGAGCCGCTTaGGCGCTTCCTGCCGCTGCC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGPPGAA*ALPAAA
Trigger: GGCAGCGGCAGGAAGCGCGCAAGCGGCTCCTGGCGG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCCGCCAGGAGCCGCTTaGGCGCTTCCTGCCGCTGCC +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPPPGAA*ALPAAA
Trigger: GGCAGCGGCAGGAAGCGCGCAAGCGGCTCCTGGCGG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAGAAGCGGGGCTCGGTaGAGAAGGCCTCCCTGGAGC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRRSGAR*RRPPWS
Trigger: GCTCCAGGGAGGCCTTCTCCACCGAGCCCCGCTTCT...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGACTGGTCCAGGAGTGTaGGAGGCAGTCGGGTGGCAC +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRATGPGV*EAVGWH
Trigger: GTGCCACCCGACTGCCTCCCACACTCCTGGACCAGT...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGCCTGTGGCCTTGGTCTaGTGTCGCCCATCCCCCTTG +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAPVALV*CRPSPL
Trigger: CAAGGGGGATGGGCGACACCAGACCAAGGCCACAGG...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGCCTGGCCCGGCCCCTaGGTATCCATCCCGGCCCTG +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGAWPGP*VSIPAL
Trigger: CAGGGCCGGGATGGATACCCAGGGGCCGGGCCAGGC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTATGCGGGGTGGGGCCTaGCTTCCCGGCGGGATGGGG +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGMRGGA*LPGGMG
Trigger: CCCCATCCCGCCGGGAAGCCAGGCCCCACCCCGCAT...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTTGCGTGCGCCCATGGTaGGGCCGTCCAGCCCGTCCG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPCVRPW*GRPARP
Trigger: CGGACGGGCTGGACGGCCCCACCATGGGCGCACGCA...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGGGTGCGTGCGCCCATaGTGGGGCCGTCCAGCCCGT +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGGCVRP*WGRPAR
Trigger: ACGGGCTGGACGGCCCCACCATGGGCGCACGCACCC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGCGCCCGAACGCCCCTTaGAGCTCAAGTCCCTGTAGG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRRPNAP*SSSPCR
Trigger: CCTACAGGGACTTGAGCTTCAAGGGGCGTTCGGGCG...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGCATCCCGGCCCTGGCTaGCCATCATGGTATGCCAGG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRHPGPG*PSWYAR
Trigger: CCTGGCATACCATGATGGTCAGCCAGGGCCGGGATG...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTATGCTGCTCTGGGCGGTaGTGGAGATGCGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVCCSGR*WRCGVG
Trigger: CCCCACCCCGCATCTCCATCACCGCCCAGAGCAGCA...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGTCGCCCATCCCCCTTaGGGTCCTTGCTCTTGCTCC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRVAHPP*GPCSCS
Trigger: GGAGCAAGAGCAAGGACCGCAAGGGGGATGGGCGAC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGGATCTCCCCATCCTTaGCACCCGTGGGGTAACCCC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRGSPHP*HPWGNP
Trigger: GGGGTTACCCCACGGGTGGCAAGGATGGGGAGATCC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGGCCGGGCCCTCTGCTaGGGTGAAGCTCTCGTGGGC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGGRALC*GEALVG
Trigger: GCCCACGAGAGCTTCACCGCAGCAGAGGGCCCGGCC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCCGGGCCGGGCCCTCTaGTGCGGTGAAGCTCTCGTG +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGPGRAL*CGEALV
Trigger: CACGAGAGCTTCACCGCAGCAGAGGGCCCGGCCCGG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGCCACTTCCGCTGTCGTaGCAAGCTCCGCAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRPLPLS*QAPQLL
Trigger: GAGGAGCTGCGGAGCTTGGCACGACAGCGGAAGTGG...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGCAGGTACGGGGCCCTaGCAGCTGGGCCCACGTCCA +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPAGTGP*QLGPRP
Trigger: TGGACGTGGGCCCAGCTGCCAGGGCCCCGTACCTGC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGGCCGGGGTACATCCTaGGGAAGGTACTGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRGRGTS*GRYCCL
Trigger: GAGGCAGCAGTACCTTCCCCAGGATGTACCCCGGCC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGGCACCCTTGCCCTGTaGGTGGCCCACACAGTCTTC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRGTLAL*VAHTVF
Trigger: GAAGACTGTGTGGGCCACCCACAGGGCAAGGGTGCC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGCCTGGCCCGGCCCCTaGGTATCCATCCCGGCCCTG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWAWPGP*VSIPAL
Trigger: CAGGGCCGGGATGGATACCCAGGGGCCGGGCCAGGC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGTCCTGGCTTTGGCCTTaGTCTCTGGACCCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRASWLWP*SLDPGA
Trigger: GGCTCCTGGGTCCAGAGACCAAGGCCAAAGCCAGGA...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAGGGCGTCCACGGCCTaGGACTCAAGCTCCCCAAAC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRRASTA*DSSSPN
Trigger: GTTTGGGGAGCTTGAGTCCCAGGCCGTGGACGCCCT...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGGGTGCGTGCGCCCATaGTGGGGCCGTCCAGCCCGT +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWGCVRP*WGRPAR
Trigger: ACGGGCTGGACGGCCCCACCATGGGCGCACGCACCC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTACAGGCGACCCATCGGTaGCCGGCGGCTCATACGGCA +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVQATHR*PAAHTA
Trigger: TGCCGTATGAGCCGCCGGCCACCGATGGGTCGCCTG...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTTGCTGCTCTGGGCGGTaGTGGAGATGCGGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGCCSGR*WRCGVG
Trigger: CCCCACCCCGCATCTCCATCACCGCCCAGAGCAGCA...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGACCGTGCGGAAGACTaGGTAGGTGGGGGCCCGAGG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPDRAED*VGGGPR
Trigger: CCTCGGGCCCCCACCTACTCAGTCTTCCGCACGGTC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGCCCCCTTGCGGTCCTTaGTCTTGCTCCGTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAPPCGP*SCSVCH
Trigger: ATGGCAAACGGAGCAAGAGCAAGGACCGCAAGGGGG...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGGCCGGGCCCTCTGCTaGGGTGAAGCTCTCGTGGGC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWGRALC*GEALVG
Trigger: GCCCACGAGAGCTTCACCGCAGCAGAGGGCCCGGCC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGAGATTGTCTCCACCTaGACCCCAATGGACGGCCGC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIREIVST*TPMDGR
Trigger: GCGGCCGTCCATTGGGGTGCAGGTGGAGACAATCTC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGCCTGTGTGTGGACCGTaGGGAAGACTGAGTAGGTGG +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAPVCGP*GRLSRW
Trigger: CCACCTACTCAGTCTTCCGCACGGTCCACACACAGG...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCGCGCTTCCTGCCGCTaGCGGTCCACCGAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWRASCR*RSTESR
Trigger: CCTGGACTCGGTGGACCGGCAGCGGCAGGAAGCGCG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCGCTTGCGCGCTTCCTaGCGCTGCCGGTCCACCGAG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWRLRAS*RCRSTE
Trigger: CTCGGTGGACCGGCAGCGGCAGGAAGCGCGCAAGCG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCGGGGCCCTGGCAGCTaGGCCCACGTCCATATGCTG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPRGPGS*AHVHML
Trigger: CAGCATATGGACGTGGGCCCAGCTGCCAGGGCCCCG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGTGTCGAAGGGGCCCTaGCCGGGGTACATCCTGGGG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPVSKGP*PGYILG
Trigger: CCCCAGGATGTACCCCGGCCAGGGCCCCTTCGACAC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGATGGAACTCCGGGGATaGATCCGGGGTGGGACACAG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRMELRG*IRGGTQ
Trigger: CTGTGTCCCACCCCGGATCCATCCCCGGAGTTCCAT...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGTGCGTGCGCCCATGGTaGGGCCGTCCAGCCCGTCCG +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSCVRPW*GRPARP
Trigger: CGGACGGGCTGGACGGCCCCACCATGGGCGCACGCA...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGGGACTGGCTCGGGGTaGCACCGGTGCCAACTCGAG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPGTGSG*HRCQLE
Trigger: CTCGAGTTGGCACCGGTGCCACCCCGAGCCAGTCCC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGGGACTGGCTCGGGGTaGCACCGGTGCCAACTCGAG +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGGTGSG*HRCQLE
Trigger: CTCGAGTTGGCACCGGTGCCACCCCGAGCCAGTCCC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGGAAGACTGAGTAGGTaGGGGCCCGAGGGCCGGGCT +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPGRLSR*GPEGRA
Trigger: AGCCCGGCCCTCGGGCCCCCACCTACTCAGTCTTCC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCAGGCGACCCATCGGTaGCCGGCGGCTCATACGGCA +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGQATHR*PAAHTA
Trigger: TGCCGTATGAGCCGCCGGCCACCGATGGGTCGCCTG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAACCGGCCAGGTCCTaGAAGGTGGGCACAGGGAAC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRKPARS*KVGTGN
Trigger: GTTCCCTGTGCCCACCTTCCAGGACCTGGCCGGTTT...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGTTAGCTGTCCAGTTGTaGGGGAACGGCTGTAGCCAG +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRALAVQL*GNGCSQ
Trigger: CTGGCTACAGCCGTTCCCTCACAACTGGACAGCTAA...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTAAGGCAGTCGTCGTCTTaGGAGCAGCCGGCCTGGATG +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVRQSSS*EQPAWM
Trigger: CATCCAGGCCGGCTGCTCTCAAGACGACGACTGCCT...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCTGGGCGGGGATGGCTaGCTCGGTCGCCATGGTAAC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGLGGDG*LGRHGN
Trigger: GTTACCATGGCGACCGAGGCAGCCATCCCCGCCCAG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGGGCCCACGTCCATATaGTGTTGGTCAGCAAAGCGG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRGPTSI*CWSAKR
Trigger: CCGCTTTGCTGACCAACAGCATATGGACGTGGGCCC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTAAGCTCCAGGTCTGCCTaGACACCGGCTGTCACGCTG +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVSSRSA*TPAVTL
Trigger: CAGCGTGACAGCCGGTGTGCAGGCAGACCTGGAGCT...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGCGCTTGCGCGCTTCCTaGCGCTGCCGGTCCACCGAG +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSRLRAS*RCRSTE
Trigger: CTCGGTGGACCGGCAGCGGCAGGAAGCGCGCAAGCG...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGTCAGCAAAGCGGGCTaGGCGGGGATGGCTGCCTCG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWVSKAG*AGMAAS
Trigger: CGAGGCAGCCATCCCCGCCCAGCCCGCTTTGCTGAC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGACGTCCATATGCTGTTaGTCAGCAAAGCGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRATSICC*SAKRAG
Trigger: CCCAGCCCGCTTTGCTGACCAACAGCATATGGACGT...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTTGGGAGGCAGTCGGGTaGCACCCTTGCCCTGTGGGT +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPWEAVG*HPCPVG
Trigger: ACCCACAGGGCAAGGGTGCCACCCGACTGCCTCCCA...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTTGGGAGGCAGTCGGGTaGCACCCTTGCCCTGTGGGT +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGWEAVG*HPCPVG
Trigger: ACCCACAGGGCAAGGGTGCCACCCGACTGCCTCCCA...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGCCTGCTGGACCTCGCTaGTATGGGAGTGTGTGGAAG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRPAGPR*YGSVWK
Trigger: CTTCCACACACTCCCATACCAGCGAGGTCCAGCAGG...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGCCTGTAGGACCCATCTaGAGCATCCAGGCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRPVGPI*SIQAEG
Trigger: CCCTTCTGCCTGGATGCTCCAGATGGGTCCTACAGG...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGTATCCATCCCGGCCCTaGCTGACCATCATGGTATGC +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAYPSRP*LTIMVC
Trigger: GCATACCATGATGGTCAGCCAGGGCCGGGATGGATA...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTAGAGTCGGTGCTGCTCTaGGCGGTGATGGAGATGCGG +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVESVLL*AVMEMR
Trigger: CCGCATCTCCATCACCGCCCAGAGCAGCACCGACTC...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCGGCTCATACGGCAGTaGGTAGCCCTCGCGGTAGGC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGRLIRQ*VALAVG
Trigger: GCCTACCGCGAGGGCTACCCACTGCCGTATGAGCCG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCATCCCGGCCCTGGCTaGCCATCATGGTATGCCAGG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPHPGPG*PSWYAR
Trigger: CCTGGCATACCATGATGGTCAGCCAGGGCCGGGATG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACCGTGCGGAAGACTaGGTAGGTGGGGGCCCGAGG +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSDRAED*VGGGPR
Trigger: CCTCGGGCCCCCACCTACTCAGTCTTCCGCACGGTC...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGTCGGGTGGCACCCTTaGCCTGTGGGTGGCCCACAC +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSVGWHP*PVGGPH
Trigger: GTGTGGGCCACCCACAGGGCAAGGGTGCCACCCGAC...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTAGTCTCGCTTCCCGGGTaGCTCCAGAGAGTGGGACTT +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVVSLPG*LQRVGL
Trigger: AAGTCCCACTCTCTGGAGGCACCCGGGAAGCGAGAC...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTATGCGGTCCTTGCTCTTaGTCCGTTTGCCATGCCGGG +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVCGPCS*SVCHAG
Trigger: CCCGGCATGGCAAACGGAGCAAGAGCAAGGACCGCA...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGCACACGGCCTCCAGCTaGTGGTTAAACTCTTCGCTT +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAHTASS*WLNSSL
Trigger: AAGCGAAGAGTTTAACCAGCAGCTGGAGGCCGTGTG...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGTGGGGCTCAGAGGCGTaGCTCTGGAAGGAGCGTCCG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWWGSEA*LWKERP
Trigger: CGGACGCTCCTTCCAGAGGCACGCCTCTGAGCCCCA...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGGCCGGGGTACATCCTaGGGAAGGTACTGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGGRGTS*GRYCCL
Trigger: GAGGCAGCAGTACCTTCCCCAGGATGTACCCCGGCC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGGCACCCTTGCCCTGTaGGTGGCCCACACAGTCTTC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGGTLAL*VAHTVF
Trigger: GAAGACTGTGTGGGCCACCCACAGGGCAAGGGTGCC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGTGGACCTCGCTGGTATaGGAGTGTGTGGAAGCCATC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRWTSLV*ECVEAI
Trigger: GATGGCTTCCACACACTCCCATACCAGCGAGGTCCA...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGGTGCCTCCAGAGAGTaGGACTTGGCAAAGAGCTTC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRGASRE*DLAKSF
Trigger: GAAGCTCTTTGCCAAGTCCCACTCTCTGGAGGCACC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTAGCTCCACCAGCCTGTaGCCTTGGTCTGGTGTCGCC +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPSSTSL*PWSGVA
Trigger: GGCGACACCAGACCAAGGCCACAGGCTGGTGGAGCT...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGTATCCATCCCGGCCCTaGCTGACCATCATGGTATGC +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRYPSRP*LTIMVC
Trigger: GCATACCATGATGGTCAGCCAGGGCCGGGATGGATA...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTATTTGGCCTTGGTCTCTaGACCCAGGAGCCCCTTGCC +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVFGLGL*TQEPLA
Trigger: GGCAAGGGGCTCCTGGGTCCAGAGACCAAGGCCAAA...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGAGTCGGTGCTGCTCTaGGCGGTGATGGAGATGCGG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPESVLL*AVMEMR
Trigger: CCGCATCTCCATCACCGCCCAGAGCAGCACCGACTC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGCGGTGAAGCTCTCGTaGGCAGAGTCGGTGCTGCTC +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPAVKLS*AESVLL
Trigger: GAGCAGCACCGACTCTGCCCACGAGAGCTTCACCGC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCCACCTGCACCCCAATaGACGGCCGCCACTTCCGCT +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWPPAPQ*TAATSA
Trigger: AGCGGAAGTGGCGGCCGTCCATTGGGGTGCAGGTGG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGGAAGACTGAGTAGGTaGGGGCCCGAGGGCCGGGCT +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSGRLSR*GPEGRA
Trigger: AGCCCGGCCCTCGGGCCCCCACCTACTCAGTCTTCC...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCGGCTCATACGGCAGTaGGTAGCCCTCGCGGTAGGC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWRLIRQ*VALAVG
Trigger: GCCTACCGCGAGGGCTACCCACTGCCGTATGAGCCG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCGCCCGAACGCCCCTTaGAGCTCAAGTCCCTGTAGG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWRPNAP*SSSPCR
Trigger: CCTACAGGGACTTGAGCTTCAAGGGGCGTTCGGGCG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGTCGGGGAGGCTACGTaGACCCCGCTCCATCCAGGA +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSVGEAT*TPLHPG
Trigger: TCCTGGATGGAGCGGGGTTCACGTAGCCTCCCCGAC...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGGTAGTTCCAGGAACTTaGGGGTCACATCCTCAATGG +
Preference number: 4 (lower is better)
Translates to: KPTKARRAEAGACGAGRAVVPGT*GSHPQW
Trigger: CCATTGAGGATGTGACCCTCAAGTTCCTGGAACTAC...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGTCTCGCTTCCCGGGTaGCTCCAGAGAGTGGGACTT +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPVSLPG*LQRVGL
Trigger: AAGTCCCACTCTCTGGAGGCACCCGGGAAGCGAGAC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAAGCGTCGGGCAAGTaGTTTTGGAGACGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRKASGK*FWRRLG
Trigger: CCCAAGACGTCTCCAAAAGCACTTGCCCGACGCTTT...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGAGATTGTCTCCACCTaGACCCCAATGGACGGCCGC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGEIVST*TPMDGR
Trigger: GCGGCCGTCCATTGGGGTGCAGGTGGAGACAATCTC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCTCCAGCTCCAGGTCTaGCTGCACACCGGCTGTCAC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWLQLQV*LHTGCH
Trigger: GTGACAGCCGGTGTGCAGGCAGACCTGGAGCTGGAG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGCTCAGGGGTCCTTCTaGAGAAAGGTGTCCCAGGCC +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPAQGSF*RKVSQA
Trigger: GGCCTGGGACACCTTTCTCCAGAAGGACCCCTGAGC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGCTCAGGGGTCCTTCTaGAGAAAGGTGTCCCAGGCC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGAQGSF*RKVSQA
Trigger: GGCCTGGGACACCTTTCTCCAGAAGGACCCCTGAGC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCCCTTGCCCTGTGGGTaGCCCACACAGTCTTCACAG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPPLPCG*PTQSSQ
Trigger: CTGTGAAGACTGTGTGGGCCACCCACAGGGCAAGGG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGACTGGTCCAGGAGTGTaGGAGGCAGTCGGGTGGCAC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWTGPGV*EAVGWH
Trigger: GTGCCACCCGACTGCCTCCCACACTCCTGGACCAGT...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGGTGCCTCCAGAGCCTaGACCAGAGTAGCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPGASRA*TRVAVS
Trigger: GGAGACAGCTACTCTGGTCCAGGCTCTGGAGGCACC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCCTGTGGCCTTGGTCTaGTGTCGCCCATCCCCCTTG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWPVALV*CRPSPL
Trigger: CAAGGGGGATGGGCGACACCAGACCAAGGCCACAGG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTAGGGATGGATCCGGGGTaGGACACAGCAGTTGATCCT +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVGMDPG*DTAVDP
Trigger: AGGATCAACTGCTGTGTCCCACCCCGGATCCATCCC...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGAGGGCGTCCACGGCCTaGGACTCAAGCTCCCCAAAC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWRASTA*DSSSPN
Trigger: GTTTGGGGAGCTTGAGTCCCAGGCCGTGGACGCCCT...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTTCAGAGGCGTGCCTCTaGAAGGAGCGTCCGAACTGC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGSEACL*KERPNC
Trigger: GCAGTTCGGACGCTCCTTCCAGAGGCACGCCTCTGA...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCACTGGCCCTGTGTGTaGACCGTGCGGAAGACTGAG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPHWPCV*TVRKTE
Trigger: CTCAGTCTTCCGCACGGTCCACACACAGGGCCAGTG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCCAGGTCCTGGAAGGTaGGCACAGGGAACGCAGTGG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWPGPGR*AQGTQW
Trigger: CCACTGCGTTCCCTGTGCCCACCTTCCAGGACCTGG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCCGCGAGGGCTTCTTTaGTATCGGCGGAGGGACCTT +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPPRGLL*YRRRDL
Trigger: AAGGTCCCTCCGCCGATACCAAAGAAGCCCTCGCGG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCCGCGAGGGCTTCTTTaGTATCGGCGGAGGGACCTT +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGPRGLL*YRRRDL
Trigger: AAGGTCCCTCCGCCGATACCAAAGAAGCCCTCGCGG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTAGGCACTTCGCTTGACTaGCTGTCCATCCAGGGACAT +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVGTSLD*LSIQGH
Trigger: ATGTCCCTGGATGGACAGTCAGTCAAGCGAAGTGCC...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGCCAGGCACTTCGCTTaGCTGACTGTCCATCCAGGG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWARHFA*LTVHPG
Trigger: CCCTGGATGGACAGTCAGTCAAGCGAAGTGCCTGGC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGTGGGACACAGCAGTTaGTCCTGGCTGTGTCCACGC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWVGHSS*SWLCPR
Trigger: GCGTGGACACAGCCAGGATCAACTGCTGTGTCCCAC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGAGGCAGTCGTCGTCTTaGGAGCAGCCGGCCTGGATG +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSRQSSS*EQPAWM
Trigger: CATCCAGGCCGGCTGCTCTCAAGACGACGACTGCCT...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCTCGGTGTCCGAGTCTaGGATTGTCTCCACCTGCAC +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGLGVRV*DCLHLH
Trigger: GTGCAGGTGGAGACAATCTCAGACTCGGACACCGAG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGTTGTCCTCTTCCACCTaGACGCCAATGGAGTGGAAT +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRLSSST*TPMEWN
Trigger: ATTCCACTCCATTGGCGTTCAGGTGGAAGAGGACAA...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGGGCCCACGTCCATATaGTGTTGGTCAGCAAAGCGG +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGGPTSI*CWSAKR
Trigger: CCGCTTTGCTGACCAACAGCATATGGACGTGGGCCC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGCCACTTCCGCTGTCGTaGCAAGCTCCGCAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSPLPLS*QAPQLL
Trigger: GAGGAGCTGCGGAGCTTGGCACGACAGCGGAAGTGG...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGCTCCAGCTCCAGGTCTaGCTGCACACCGGCTGTCAC +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSLQLQV*LHTGCH
Trigger: GTGACAGCCGGTGTGCAGGCAGACCTGGAGCTGGAG...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCCTGTGTGTGGACCGTaGGGAAGACTGAGTAGGTGG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPPVCGP*GRLSRW
Trigger: CCACCTACTCAGTCTTCCGCACGGTCCACACACAGG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGCCTCACGCTCCATCTaGTGGCACCAGTGTTCCAGT +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGASRSI*WHQCSS
Trigger: ACTGGAACACTGGTGCCAGCAGATGGAGCGTGAGGC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCCCTTGCCCTGTGGGTaGCCCACACAGTCTTCACAG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWPLPCG*PTQSSQ
Trigger: CTGTGAAGACTGTGTGGGCCACCCACAGGGCAAGGG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTATGGACCTCGCTGGTATaGGAGTGTGTGGAAGCCATC +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVWTSLV*ECVEAI
Trigger: GATGGCTTCCACACACTCCCATACCAGCGAGGTCCA...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCCTGCTGGACCTCGCTaGTATGGGAGTGTGTGGAAG +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGPAGPR*YGSVWK
Trigger: CTTCCACACACTCCCATACCAGCGAGGTCCAGCAGG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGGTGCCTCCAGAGCCTaGACCAGAGTAGCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWGASRA*TRVAVS
Trigger: GGAGACAGCTACTCTGGTCCAGGCTCTGGAGGCACC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGAGCTCCACCAGCCTGTaGCCTTGGTCTGGTGTCGCC +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSSSTSL*PWSGVA
Trigger: GGCGACACCAGACCAAGGCCACAGGCTGGTGGAGCT...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGGCTGTAGCCAGGGATaGAACTCCGGGGATGGATCC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWGCSQG*NSGDGS
Trigger: GGATCCATCCCCGGAGTTCCATCCCTGGCTACAGCC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGCGGTGAAGCTCTCGTaGGCAGAGTCGGTGCTGCTC +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSAVKLS*AESVLL
Trigger: GAGCAGCACCGACTCTGCCCACGAGAGCTTCACCGC...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCACTGGCCCTGTGTGTaGACCGTGCGGAAGACTGAG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWHWPCV*TVRKTE
Trigger: CTCAGTCTTCCGCACGGTCCACACACAGGGCCAGTG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGCCAGGTCCTGGAAGGTaGGCACAGGGAACGCAGTGG +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSPGPGR*AQGTQW
Trigger: CCACTGCGTTCCCTGTGCCCACCTTCCAGGACCTGG...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGTGGGACACAGCAGTTaGTCCTGGCTGTGTCCACGC +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSVGHSS*SWLCPR
Trigger: GCGTGGACACAGCCAGGATCAACTGCTGTGTCCCAC...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCTCGGTGTCCGAGTCTaGGATTGTCTCCACCTGCAC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWLGVRV*DCLHLH
Trigger: GTGCAGGTGGAGACAATCTCAGACTCGGACACCGAG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGTGCGGTCCTTGCTCTTaGTCCGTTTGCCATGCCGGG +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSCGPCS*SVCHAG
Trigger: CCCGGCATGGCAAACGGAGCAAGAGCAAGGACCGCA...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTAAGGAGCGTCCGAACTaGAGGGCCTTGTCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPKERPN*RALSSV
Trigger: CACAGAAGACAAGGCCCTGCAGTTCGGACGCTCCTT...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGTGGTATGGGAGTGTGTaGAAGCCATCTTGTTGGACT +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRWYGSV*KPSCWT
Trigger: AGTCCAACAAGATGGCTTCCACACACTCCCATACCA...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGTCCATCCAGGGACATaGACATGCCAGTGCAGGCAA +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPVHPGT*TCQCRQ
Trigger: TTGCCTGCACTGGCATGTCCATGTCCCTGGATGGAC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGTCCTGGCTTTGGCCTTaGTCTCTGGACCCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSSWLWP*SLDPGA
Trigger: GGCTCCTGGGTCCAGAGACCAAGGCCAAAGCCAGGA...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTTCGGGCAAGTGCTTTTaGAGACGTCTTGGGGCTACC +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPSGKCF*RRLGAT
Trigger: GGTAGCCCCAAGACGTCTCCAAAAGCACTTGCCCGA...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGATGGAACTCCGGGGATaGATCCGGGGTGGGACACAG +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSMELRG*IRGGTQ
Trigger: CTGTGTCCCACCCCGGATCCATCCCCGGAGTTCCAT...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGGCTGTAGCCAGGGATaGAACTCCGGGGATGGATCC +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSGCSQG*NSGDGS
Trigger: GGATCCATCCCCGGAGTTCCATCCCTGGCTACAGCC...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGTCAGAGGCGTGCCTCTaGAAGGAGCGTCCGAACTGC +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSSEACL*KERPNC
Trigger: GCAGTTCGGACGCTCCTTCCAGAGGCACGCCTCTGA...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGGCACTTCGCTTGACTaGCTGTCCATCCAGGGACAT +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWGTSLD*LSIQGH
Trigger: ATGTCCCTGGATGGACAGTCAGTCAAGCGAAGTGCC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTATCCAGCTGTTGGCCTTaGGTTGTTGTAGTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVSSCWP*VVVVPG
Trigger: TCCTGGAACTACAACAACTCAAGGCCAACAGCTGGA...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGCCCCCTTGCGGTCCTTaGTCTTGCTCCGTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSPPCGP*SCSVCH
Trigger: ATGGCAAACGGAGCAAGAGCAAGGACCGCAAGGGGG...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTACTGACCATCATGGTATaGCAGGCACTTCGCTTGACT +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVLTIMV*QALRLT
Trigger: AGTCAAGCGAAGTGCCTGGCATACCATGATGGTCAG...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTAAAGCGTCGGGCAAGTaGTTTTGGAGACGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGKASGK*FWRRLG
Trigger: CCCAAGACGTCTCCAAAAGCACTTGCCCGACGCTTT...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCACACGGCCTCCAGCTaGTGGTTAAACTCTTCGCTT +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPHTASS*WLNSSL
Trigger: AAGCGAAGAGTTTAACCAGCAGCTGGAGGCCGTGTG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGAAGGAGCGTCCGAACTaGAGGGCCTTGTCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWKERPN*RALSSV
Trigger: CACAGAAGACAAGGCCCTGCAGTTCGGACGCTCCTT...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGCCTCACGCTCCATCTaGTGGCACCAGTGTTCCAGT +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSASRSI*WHQCSS
Trigger: ACTGGAACACTGGTGCCAGCAGATGGAGCGTGAGGC...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGCCTGTAGGACCCATCTaGAGCATCCAGGCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSPVGPI*SIQAEG
Trigger: CCCTTCTGCCTGGATGCTCCAGATGGGTCCTACAGG...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGTCGGGCAAGTGCTTTTaGAGACGTCTTGGGGCTACC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWSGKCF*RRLGAT
Trigger: GGTAGCCCCAAGACGTCTCCAAAAGCACTTGCCCGA...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGGGATGGATCCGGGGTaGGACACAGCAGTTGATCCT +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSGMDPG*DTAVDP
Trigger: AGGATCAACTGCTGTGTCCCACCCCGGATCCATCCC...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTACGGCCTCCAGCTGCTaGTTAAACTCTTCGCTTAGC +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPTASSC*LNSSLS
Trigger: GCTAAGCGAAGAGTTTAACCAGCAGCTGGAGGCCGT...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTTTGTCCTCTTCCACCTaGACGCCAATGGAGTGGAAT +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGLSSST*TPMEWN
Trigger: ATTCCACTCCATTGGCGTTCAGGTGGAAGAGGACAA...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTTTTGCTGACACAGCCTaGAGAACTGCTGGACCTTCT +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGFADTA*RTAGPS
Trigger: AGAAGGTCCAGCAGTTCTTCAGGCTGTGTCAGCAAA...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTTCCAGCTGTTGGCCTTaGGTTGTTGTAGTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPSSCWP*VVVVPG
Trigger: TCCTGGAACTACAACAACTCAAGGCCAACAGCTGGA...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCTGACCATCATGGTATaGCAGGCACTTCGCTTGACT +
Preference number: 4 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGLTIMV*QALRLT
Trigger: AGTCAAGCGAAGTGCCTGGCATACCATGATGGTCAG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR GCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCAGTTTCTCCACCTCTaGCCGCAGCATCTTGATGAA +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPQFLHL*PQHLDE
Trigger: TTCATCAAGATGCTGCGGGCAGAGGTGGAGAAACTG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGACGTCCATATGCTGTTaGTCAGCAAAGCGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSTSICC*SAKRAG
Trigger: CCCAGCCCGCTTTGCTGACCAACAGCATATGGACGT...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGCCATCTTGTTGGACTaGCAATTGCTTTTCAAACTG +
Preference number: 4 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRAILLD*QLLFKL
Trigger: CAGTTTGAAAAGCAATTGCCAGTCCAACAAGATGGC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGTCACGCTCCATCTGCTaGCACCAGTGTTCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWSRSIC*HQCSSF
Trigger: GAAACTGGAACACTGGTGCCAGCAGATGGAGCGTGA...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGTTTGCTGACACAGCCTaGAGAACTGCTGGACCTTCT +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWFADTA*RTAGPS
Trigger: AGAAGGTCCAGCAGTTCTTCAGGCTGTGTCAGCAAA...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR TCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGTAGTTCCAGGAACTTaGGGGTCACATCCTCAATGG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWVVPGT*GSHPQW
Trigger: CCATTGAGGATGTGACCCTCAAGTTCCTGGAACTAC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTAATTGCTTTTCAAACTaGTCCAGGAGTGTGGGAGGC +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPNCFSN*SRSVGG
Trigger: GCCTCCCACACTCCTGGACCAGTTTGAAAAGCAATT...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTAAATAGTGATAAGTCCTaGCTTTGGCCTTGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVNSDKS*LWPWSL
Trigger: CAGAGACCAAGGCCAAAGCCAGGACTTATCACTATT...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGAATTGCTTTTCAAACTaGTCCAGGAGTGTGGGAGGC +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWNCFSN*SRSVGG
Trigger: GCCTCCCACACTCCTGGACCAGTTTGAAAAGCAATT...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTATGGAAGCCATCTTGTTaGACTGGCAATTGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVWKPSC*TGNCFS
Trigger: TGAAAAGCAATTGCCAGTCCAACAAGATGGCTTCCA...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTAATAGTGATAAGTCCTaGCTTTGGCCTTGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPNSDKS*LWPWSL
Trigger: CAGAGACCAAGGCCAAAGCCAGGACTTATCACTATT...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGCCACCTGAACGCCAATaGAGTGGAATTCTCTTCGAC +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSPPERQ*SGILFD
Trigger: GTCGAAGAGAATTCCACTCCATTGGCGTTCAGGTGG...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTTGGAAGCCATCTTGTTaGACTGGCAATTGCTTTTCA +
Preference number: 4 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPWKPSC*TGNCFS
Trigger: TGAAAAGCAATTGCCAGTCCAACAAGATGGCTTCCA...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGTGGTATGGGAGTGTGTaGAAGCCATCTTGTTGGACT +
Preference number: 4 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSWYGSV*KPSCWT
Trigger: AGTCCAACAAGATGGCTTCCACACACTCCCATACCA...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CCA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGCCATCTTGTTGGACTaGCAATTGCTTTTCAAACTG +
Preference number: 4 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWAILLD*QLLFKL
Trigger: CAGTTTGAAAAGCAATTGCCAGTCCAACAAGATGGC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS CCA 90 bp TGGCTCGGGGTGGCACCGGTGCCAACTCGAGGGTGCGTGCGCCCATaGTGGGGCCGTCCAGCCCGTCCGCGGAGCTGCAGCGCCGGGCCG +
Preference number: 5 (lower is better)
Translates to: WLGVAPVPTRGCVRP*WGRPARPRSCSAGP
Trigger: CGGCCCGGCGCTGCAGCTCCGCGGACGGGCTGGACGGCCCCACCATGGGCGCACGCACCCTCGAGTTGGCACCGGTGCCACCCCGAGCCA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp CCGCTCCATCCAGGAATCACGGCGGCCGGACCCGGGACCGGGGGCTaGGACAGGGGTAGGGCCAGGCGACCCATCGGTGGCCGGCGGCTC +
Preference number: 5 (lower is better)
Translates to: PLHPGITAAGPGTGG*DRGRARRPIGGRRL
Trigger: GAGCCGCCGGCCACCGATGGGTCGCCTGGCCCTACCCCTGTCCCAGCCCCCGGTCCCGGGTCCGGCCGCCGTGATTCCTGGATGGAGCGG
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 90 bp CTTGGGACTGGCTCGGGGTGGCACCGGTGCCAACTCGAGGGTGCGTaGGCCCATGGTGGGGCCGTCCAGCCCGTCCGCGGAGCTGCAGCG +
Preference number: 5 (lower is better)
Translates to: LGTGSGWHRCQLEGA*AHGGAVQPVRGAAA
Trigger: CGCTGCAGCTCCGCGGACGGGCTGGACGGCCCCACCATGGGCGCACGCACCCTCGAGTTGGCACCGGTGCCACCCCGAGCCAGTCCCAAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAACGAGGCGGCGCGCTaGGCCGCCAGGAGCCGCTTG +
Preference number: 5 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRNEAAR*AARSRL
Trigger: CAAGCGGCTCCTGGCGGCCAAGCGCGCCGCCTCGTT...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGAGTCGGGTGGCACCCTaGCCCTGTGGGTGGCCCACA +
Preference number: 5 (lower is better)
Translates to: KPTKARRAEAGACGAGRASRVAP*PCGWPT
Trigger: TGTGGGCCACCCACAGGGCAAGGGTGCCACCCGACT...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS GCA 90 bp GTGGGTAGCCCTCGCGGTAGGCCCACTGGCCCTGTGTGTGGACCGTaGGGAAGACTGAGTAGGTGGGGGCCCGAGGGCCGGGCTGGGGCT +
Preference number: 5 (lower is better)
Translates to: VGSPRGRPTGPVCGP*GRLSRWGPEGRAGA
Trigger: AGCCCCAGCCCGGCCCTCGGGCCCCCACCTACTCAGTCTTCCGCACGGTCCACACACAGGGCCAGTGGGCCTACCGCGAGGGCTACCCAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp CCCTCTGCTGCGGTGAAGCTCTCGTGGGCAGAGTCGGTGCTGCTCTaGGCGGTGATGGAGATGCGGGGTGGGGCCTGGCTTCCCGGCGGG +
Preference number: 5 (lower is better)
Translates to: PSAAVKLSWAESVLL*AVMEMRGGAWLPGG
Trigger: CCCGCCGGGAAGCCAGGCCCCACCCCGCATCTCCATCACCGCCCAGAGCAGCACCGACTCTGCCCACGAGAGCTTCACCGCAGCAGAGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp AGGCCCACTGGCCCTGTGTGTGGACCGTGCGGAAGACTGAGTAGGTaGGGGCCCGAGGGCCGGGCTGGGGCTCAGAGGCGTGCCTCTGGA +
Preference number: 5 (lower is better)
Translates to: RPTGPVCGPCGRLSR*GPEGRAGAQRRASG
Trigger: TCCAGAGGCACGCCTCTGAGCCCCAGCCCGGCCCTCGGGCCCCCACCTACTCAGTCTTCCGCACGGTCCACACACAGGGCCAGTGGGCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp GGTAGGGCCAGGCGACCCATCGGTGGCCGGCGGCTCATACGGCAGTaGGTAGCCCTCGCGGTAGGCCCACTGGCCCTGTGTGTGGACCGT +
Preference number: 5 (lower is better)
Translates to: GRARRPIGGRRLIRQ*VALAVGPLALCVDR
Trigger: ACGGTCCACACACAGGGCCAGTGGGCCTACCGCGAGGGCTACCCACTGCCGTATGAGCCGCCGGCCACCGATGGGTCGCCTGGCCCTACC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGGGGGCCTTTCTGAAGTaGAAGGAGGAGCCGGGCCTC +
Preference number: 5 (lower is better)
Translates to: KPTKARRAEAGACGAGRAGAFLK*KEEPGL
Trigger: GAGGCCCGGCTCCTCCTTCAACTTCAGAAAGGCCCC...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGACGCTGTTGGAGCGCTaGAACCTCGCCCGCCTCTTG +
Preference number: 5 (lower is better)
Translates to: KPTKARRAEAGACGAGRATLLER*NLARLL
Trigger: CAAGAGGCGGGCGAGGTTCAAGCGCTCCAACAGCGT...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTAACGAGGCGGCGCGCTaGGCCGCCAGGAGCCGCTTG +
Preference number: 5 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGNEAAR*AARSRL
Trigger: CAAGCGGCTCCTGGCGGCCAAGCGCGCCGCCTCGTT...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGTGTCGCCCATCCCCCTaGCGGTCCTTGCTCTTGCTC +
Preference number: 5 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRCRPSP*RSLLLL
Trigger: GAGCAAGAGCAAGGACCGCAAGGGGGATGGGCGACA...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS CCA 90 bp AGCAGGTACGGGGCCCTGGCAGCTGGGCCCACGTCCATATGCTGTTaGTCAGCAAAGCGGGCTGGGCGGGGATGGCTGCCTCGGTCGCCA +
Preference number: 5 (lower is better)
Translates to: SRYGALAAGPTSICC*SAKRAGRGWLPRSP
Trigger: TGGCGACCGAGGCAGCCATCCCCGCCCAGCCCGCTTTGCTGACCAACAGCATATGGACGTGGGCCCAGCTGCCAGGGCCCCGTACCTGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp AAAGGTGTCCCAGGCCAGCTCTCGGAGCACAGAAGCGGGGCTCGGTaGAGAAGGCCTCCCTGGAGCCCAGCAGGTACGGGGCCCTGGCAG +
Preference number: 5 (lower is better)
Translates to: KGVPGQLSEHRSGAR*RRPPWSPAGTGPWQ
Trigger: CTGCCAGGGCCCCGTACCTGCTGGGCTCCAGGGAGGCCTTCTCCACCGAGCCCCGCTTCTGTGCTCCGAGAGCTGGCCTGGGACACCTTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp TCCAGGAGTGTGGGAGGCAGTCGGGTGGCACCCTTGCCCTGTGGGTaGCCCACACAGTCTTCACAGGTGTCGAAGGGGCCCTGGCCGGGG +
Preference number: 5 (lower is better)
Translates to: SRSVGGSRVAPLPCG*PTQSSQVSKGPWPG
Trigger: CCCCGGCCAGGGCCCCTTCGACACCTGTGAAGACTGTGTGGGCCACCCACAGGGCAAGGGTGCCACCCGACTGCCTCCCACACTCCTGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp GGCCTTGGTCTCTGGACCCAGGAGCCCCTTGCCTGGCCCGGCCCCTaGGTATCCATCCCGGCCCTGGCTGACCATCATGGTATGCCAGGC +
Preference number: 5 (lower is better)
Translates to: GLGLWTQEPLAWPGP*VSIPALADHHGMPG
Trigger: GCCTGGCATACCATGATGGTCAGCCAGGGCCGGGATGGATACCCAGGGGCCGGGCCAGGCAAGGGGCTCCTGGGTCCAGAGACCAAGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp GGAGCGCTCCTTCACCGGCACGCCCCGCCCCCGCGAGGGCTTCTTTaGTATCGGCGGAGGGACCTTCTTCTCCTCCTTCGGCTCCAGGAG +
Preference number: 5 (lower is better)
Translates to: GALLHRHAPPPRGLL*YRRRDLLLLLRLQE
Trigger: CTCCTGGAGCCGAAGGAGGAGAAGAAGGTCCCTCCGCCGATACCAAAGAAGCCCTCGCGGGGGCGGGGCGTGCCGGTGAAGGAGCGCTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGTTGCTCTTGCTCCGTTaGCCATGCCGGGACTGGTGG +
Preference number: 5 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRLLLLR*PCRDWW
Trigger: CCACCAGTCCCGGCATGGCAAACGGAGCAAGAGCAA...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGTGCCAGGCACTTCGCTaGACTGACTGTCCATCCAGG +
Preference number: 5 (lower is better)
Translates to: KPTKARRAEAGACGAGRACQALR*TDCPSR
Trigger: CCTGGATGGACAGTCAGTCAAGCGAAGTGCCTGGCA...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGCTGAGACAGGAGAAGTaGCGTACTGCCCACGGCACT +
Preference number: 5 (lower is better)
Translates to: KPTKARRAEAGACGAGRALRQEK*RTAHGT
Trigger: AGTGCCGTGGGCAGTACGCAACTTCTCCTGTCTCAG...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTACCCGCGAGGGCTTCTTaGGTATCGGCGGAGGGACCT +
Preference number: 5 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVPARAS*VSAEGP
Trigger: AGGTCCCTCCGCCGATACCAAAGAAGCCCTCGCGGG...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS CCA 90 bp CTGGTCCAGGAGTGTGGGAGGCAGTCGGGTGGCACCCTTGCCCTGTaGGTGGCCCACACAGTCTTCACAGGTGTCGAAGGGGCCCTGGCC +
Preference number: 5 (lower is better)
Translates to: LVQECGRQSGGTLAL*VAHTVFTGVEGALA
Trigger: GGCCAGGGCCCCTTCGACACCTGTGAAGACTGTGTGGGCCACCCACAGGGCAAGGGTGCCACCCGACTGCCTCCCACACTCCTGGACCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCACCAGCCTGTGGCCTaGGTCTGGTGTCGCCCATCC +
Preference number: 5 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGHQPVA*VWCRPS
Trigger: GGATGGGCGACACCAGACCAAGGCCACAGGCTGGTG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGGTCGGGCAAGTGCTTTaGGAGACGTCTTGGGGCTAC +
Preference number: 5 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRVGQVL*ETSWGY
Trigger: GTAGCCCCAAGACGTCTCCAAAAGCACTTGCCCGAC...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCCGGCTGTCACGCTGTaGGAGCGCTTGAACCTCGCC +
Preference number: 5 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGPAVTL*ERLNLA
Trigger: GGCGAGGTTCAAGCGCTCCAACAGCGTGACAGCCGG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTCCGGCTGTCACGCTGTaGGAGCGCTTGAACCTCGCC +
Preference number: 5 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPPAVTL*ERLNLA
Trigger: GGCGAGGTTCAAGCGCTCCAACAGCGTGACAGCCGG...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGAGTCGGGTGGCACCCTaGCCCTGTGGGTGGCCCACA +
Preference number: 5 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSSRVAP*PCGWPT
Trigger: TGTGGGCCACCCACAGGGCAAGGGTGCCACCCGACT...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTATTGCGGTCCTTGCTCTaGCTCCGTTTGCCATGCCGG +
Preference number: 5 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVLRSLL*LRLPCR
Trigger: CCGGCATGGCAAACGGAGCAAGAGCAAGGACCGCAA...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCACCAGCCTGTGGCCTaGGTCTGGTGTCGCCCATCC +
Preference number: 5 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWHQPVA*VWCRPS
Trigger: GGATGGGCGACACCAGACCAAGGCCACAGGCTGGTG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTACGCTGTTGGAGCGCTaGAACCTCGCCCGCCTCTTG +
Preference number: 5 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPTLLER*NLARLL
Trigger: CAAGAGGCGGGCGAGGTTCAAGCGCTCCAACAGCGT...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGAGTGGGGTCCAAGCTTaGCTGACACAGCCTGAAGAA +
Preference number: 5 (lower is better)
Translates to: KPTKARRAEAGACGAGRASGVQA*LTQPEE
Trigger: TTCTTCAGGCTGTGTCAGCAAAGCTTGGACCCCACT...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCCCGCGAGGGCTTCTTaGGTATCGGCGGAGGGACCT +
Preference number: 5 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWPARAS*VSAEGP
Trigger: AGGTCCCTCCGCCGATACCAAAGAAGCCCTCGCGGG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS GCA 90 bp GCGAGCCTCGGGGGCAGCGCCAGATCCAGGTCCAGGACCAGGCCCTaGTGGACCTCGCTGGTATGGGAGTGTGTGGAAGCCATCTTGTTG +
Preference number: 5 (lower is better)
Translates to: ASLGGSARSRSRTRP*WTSLVWECVEAILL
Trigger: CAACAAGATGGCTTCCACACACTCCCATACCAGCGAGGTCCAGCAGGGCCTGGTCCTGGACCTGGATCTGGCGCTGCCCCCGAGGCTCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp GTGGTGGTGATGGTGGTGGTGGGAGGTGGGGGTGCCTCCAGAGCCTaGACCAGAGTAGCTGTCTCCCCCAGAGCTACCTCTTCCGTCGGC +
Preference number: 5 (lower is better)
Translates to: VVVMVVVGGGGASRA*TRVAVSPRATSSVG
Trigger: GCCGACGGAAGAGGTAGCTCTGGGGGAGACAGCTACTCTGGTCCAGGCTCTGGAGGCACCCCCACCTCCCACCACCACCATCACCACCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTACACGTCCATATGCTGTaGGTCAGCAAAGCGGGCTGG +
Preference number: 5 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVHVHML*VSKAGW
Trigger: CCAGCCCGCTTTGCTGACCAACAGCATATGGACGTG...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTTTGCTCTTGCTCCGTTaGCCATGCCGGGACTGGTGG +
Preference number: 5 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGLLLLR*PCRDWW
Trigger: CCACCAGTCCCGGCATGGCAAACGGAGCAAGAGCAA...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGGTGGGACACAGCAGTaGATCCTGGCTGTGTCCACG +
Preference number: 5 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPGGTQQ*ILAVST
Trigger: CGTGGACACAGCCAGGATCAACTGCTGTGTCCCACC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGGGGGCCTTTCTGAAGTaGAAGGAGGAGCCGGGCCTC +
Preference number: 5 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWGAFLK*KEEPGL
Trigger: GAGGCCCGGCTCCTCCTTCAACTTCAGAAAGGCCCC...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
66% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCCGAACTGCAGGGCCTaGTCTTCTGTGGCCACAGTG +
Preference number: 5 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGPNCRA*SSVATV
Trigger: CACTGTGGCCACAGAAGACAAGGCCCTGCAGTTCGG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp CAGGGCGGGCGCACGGAGCTGCCCGCGTTCACAGTGACCTCGACGCTGGGTGTACTGAGACAGGAGAAGTaGCGTACTGCCCACGGCACT +
Preference number: 5 (lower is better)
Translates to: QGGRTELPAFTVTSTLGVLRQEK*RTAHGT
Trigger: AGTGCCGTGGGCAGTACGCAACTTCTCCTGTCTCAG...TACACCCAGCGTCGAGGTCACTGTGAACGCGGGCAGCTCCGTGCGCCCGCCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS TCA 90 bp CAGTGCAGGCAAGGCAGCGGCCTTCCGACCCGCCCGAACGCCCCTTaGAGCTCAAGTCCCTGTAGGACCCATCTGGAGCATCCAGGCAGA +
Preference number: 5 (lower is better)
Translates to: QCRQGSGLPTRPNAP*SSSPCRTHLEHPGR
Trigger: TCTGCCTGGATGCTCCAGATGGGTCCTACAGGGACTTGAGCTTCAAGGGGCGTTCGGGCGGGTCGGAAGGCCGCTGCCTTGCCTGCACTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 90 bp AGCTCCACCAGCCTGTGGCCTTGGTCTGGTGTCGCCCATCCCCCTTaGGGTCCTTGCTCTTGCTCCGTTTGCCATGCCGGGACTGGTGGT +
Preference number: 5 (lower is better)
Translates to: SSTSLWPWSGVAHPP*GPCSCSVCHAGTGG
Trigger: ACCACCAGTCCCGGCATGGCAAACGGAGCAAGAGCAAGGACCGCAAGGGGGATGGGCGACACCAGACCAAGGCCACAGGCTGGTGGAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 90 bp TGTCTCCACCTGCACCCCAATGGACGGCCGCCACTTCCGCTGTCGTaGCAAGCTCCGCAGCTCCTCCCGGCCAGGGATGGTCTTGATGAT +
Preference number: 5 (lower is better)
Translates to: CLHLHPNGRPPLPLS*QAPQLLPARDGLDD
Trigger: ATCATCAAGACCATCCCTGGCCGGGAGGAGCTGCGGAGCTTGGCACGACAGCGGAAGTGGCGGCCGTCCATTGGGGTGCAGGTGGAGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp AGCCTCGGGGGCAGCGCCAGATCCAGGTCCAGGACCAGGCCCTGCTaGACCTCGCTGGTATGGGAGTGTGTGGAAGCCATCTTGTTGGAC +
Preference number: 5 (lower is better)
Translates to: SLGGSARSRSRTRPC*TSLVWECVEAILLD
Trigger: GTCCAACAAGATGGCTTCCACACACTCCCATACCAGCGAGGTCCAGCAGGGCCTGGTCCTGGACCTGGATCTGGCGCTGCCCCCGAGGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp ACTGGTGGTGGTGGTGATGGTGGTGGTGATGGTGGTGGTGGGAGGTaGGGGTGCCTCCAGAGCCTGGACCAGAGTAGCTGTCTCCCCCAG +
Preference number: 5 (lower is better)
Translates to: TGGGGDGGGDGGGGR*GCLQSLDQSSCLPQ
Trigger: CTGGGGGAGACAGCTACTCTGGTCCAGGCTCTGGAGGCACCCCCACCTCCCACCACCACCATCACCACCACCATCACCACCACCACCAGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTCACGTCCATATGCTGTaGGTCAGCAAAGCGGGCTGG +
Preference number: 5 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGHVHML*VSKAGW
Trigger: CCAGCCCGCTTTGCTGACCAACAGCATATGGACGTG...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGGTGGAAGCCATCTTGTaGGACTGGCAATTGCTTTTC +
Preference number: 5 (lower is better)
Translates to: KPTKARRAEAGACGAGRAVEAIL*DWQLLF
Trigger: GAAAAGCAATTGCCAGTCCAACAAGATGGCTTCCAC...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGTGTGTGGAAGCCATCTaGTTGGACTGGCAATTGCTT +
Preference number: 5 (lower is better)
Translates to: KPTKARRAEAGACGAGRACVEAI*LDWQLL
Trigger: AAGCAATTGCCAGTCCAACAAGATGGCTTCCACACA...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGTTGCGGTCCTTGCTCTaGCTCCGTTTGCCATGCCGG +
Preference number: 5 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWLRSLL*LRLPCR
Trigger: CCGGCATGGCAAACGGAGCAAGAGCAAGGACCGCAA...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGTGTCGCCCATCCCCCTaGCGGTCCTTGCTCTTGCTC +
Preference number: 5 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSCRPSP*RSLLLL
Trigger: GAGCAAGAGCAAGGACCGCAAGGGGGATGGGCGACA...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTGTCGGGCAAGTGCTTTaGGAGACGTCTTGGGGCTAC +
Preference number: 5 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGVGQVL*ETSWGY
Trigger: GTAGCCCCAAGACGTCTCCAAAAGCACTTGCCCGAC...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGCCGAACTGCAGGGCCTaGTCTTCTGTGGCCACAGTG +
Preference number: 5 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWPNCRA*SSVATV
Trigger: CACTGTGGCCACAGAAGACAAGGCCCTGCAGTTCGG...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTTCTGCCCGCAGCATCTaGATGAACCACTCGCCATCC +
Preference number: 5 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPSARSI*MNHSPS
Trigger: GGATGGCGAGTGGTTCATCAAGATGCTGCGGGCAGA...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS GCA 90 bp AGCCTGTGGCCTTGGTCTGGTGTCGCCCATCCCCCTTGCGGTCCTTaGTCTTGCTCCGTTTGCCATGCCGGGACTGGTGGTGGTGGTGAT +
Preference number: 5 (lower is better)
Translates to: SLWPWSGVAHPPCGP*SCSVCHAGTGGGGD
Trigger: ATCACCACCACCACCAGTCCCGGCATGGCAAACGGAGCAAGAGCAAGGACCGCAAGGGGGATGGGCGACACCAGACCAAGGCCACAGGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp GACCAGAGTAGCTGTCTCCCCCAGAGCTACCTCTTCCGTCGGCCTTaGGCCCGTTATAGTCTCGCTTCCCGGGTGCCTCCAGAGAGTGGG +
Preference number: 5 (lower is better)
Translates to: DQSSCLPQSYLFRRP*ARYSLASRVPPESG
Trigger: CCCACTCTCTGGAGGCACCCGGGAAGCGAGACTATAACGGGCCCAAGGCCGACGGAAGAGGTAGCTCTGGGGGAGACAGCTACTCTGGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AAACCCACGAAAGCGCGGCGGGCAGAAGCCGGGGCGTGCGGTGCCGGCAGGGCGTTGTTGGACTGGCAATaGCTTTTCAAACTGGTCCAG +
Preference number: 5 (lower is better)
Translates to: KPTKARRAEAGACGAGRALLDWQ*LFKLVQ
Trigger: CTGGACCAGTTTGAAAAGCAATTGCCAGTCCAACAA...CGCCCTGCCGGCACCGCACGCCCCGGCTTCTGCCCGCCGCGCTTTCGTGGGTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGGTGGGACACAGCAGTaGATCCTGGCTGTGTCCACG +
Preference number: 5 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSGGTQQ*ILAVST
Trigger: CGTGGACACAGCCAGGATCAACTGCTGTGTCCCACC...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTTGTCCGAGTCTGAGATaGTCTCCACCTGCACCCCAA +
Preference number: 5 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGCPSLR*SPPAPQ
Trigger: TTGGGGTGCAGGTGGAGACAATCTCAGACTCGGACA...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTTGTCCGAGTCTGAGATaGTCTCCACCTGCACCCCAA +
Preference number: 5 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPCPSLR*SPPAPQ
Trigger: TTGGGGTGCAGGTGGAGACAATCTCAGACTCGGACA...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GGGCGGAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGTGTAGTTCCAGGAACTaGAGGGTCACATCCTCAATG +
Preference number: 5 (lower is better)
Translates to: GRRGTTPSLARAPLRGIRCSSRN*RVTSSM
Trigger: CATTGAGGATGTGACCCTCAAGTTCCTGGAACTACA...CCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTCCGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS CCA 90 bp CGGCACCTGCAAATAGTGATAAGTCCTGGCTTTGGCCTTGGTCTCTaGACCCAGGAGCCCCTTGCCTGGCCCGGCCCCTGGGTATCCATC +
Preference number: 5 (lower is better)
Translates to: RHLQIVISPGFGLGL*TQEPLAWPGPWVSI
Trigger: GATGGATACCCAGGGGCCGGGCCAGGCAAGGGGCTCCTGGGTCCAGAGACCAAGGCCAAAGCCAGGACTTATCACTATTTGCAGGTGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 90 bp CATCTTGCGGCACCTGCAAATAGTGATAAGTCCTGGCTTTGGCCTTaGTCTCTGGACCCAGGAGCCCCTTGCCTGGCCCGGCCCCTGGGT +
Preference number: 5 (lower is better)
Translates to: HLAAPANSDKSWLWP*SLDPGAPCLARPLG
Trigger: ACCCAGGGGCCGGGCCAGGCAAGGGGCTCCTGGGTCCAGAGACCAAGGCCAAAGCCAGGACTTATCACTATTTGCAGGTGCCGCAAGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGTCTGCCCGCAGCATCTaGATGAACCACTCGCCATCC +
Preference number: 5 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSSARSI*MNHSPS
Trigger: GGATGGCGAGTGGTTCATCAAGATGCTGCGGGCAGA...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp CTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGGACTGGAGTGGGGTCCAAGCTTaGCTGACACAGCCTGAAGAA +
Preference number: 5 (lower is better)
Translates to: LDAGCTVRVENRGPGSDWSGVQA*LTQPEE
Trigger: TTCTTCAGGCTGTGTCAGCAAAGCTTGGACCCCACT...CCAGTCCGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp GAGAGGCACGACCCCCAGCCTAGCCCGGGCGCCTTTGCGTGGGATCAGGAAGGTTTCCAGCTGTTGGCCTaGAGTTGTTGTAGTTCCAGG +
Preference number: 5 (lower is better)
Translates to: ERHDPQPSPGAFAWDQEGFQLLA*SCCSSR
Trigger: CCTGGAACTACAACAACTCAAGGCCAACAGCTGGAA...ACCTTCCTGATCCCACGCAAAGGCGCCCGGGCTAGGCTGGGGGTCGTGCCTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTTTCCAGCTGTTGGCCTaGAGTTGTTGTAGTTCCAGG +
Preference number: 5 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPFQLLA*SCCSSR
Trigger: CCTGGAACTACAACAACTCAAGGCCAACAGCTGGAA...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTGTGGAAGCCATCTTGTaGGACTGGCAATTGCTTTTC +
Preference number: 5 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPVEAIL*DWQLLF
Trigger: GAAAAGCAATTGCCAGTCCAACAAGATGGCTTCCAC...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTTGTGTGGAAGCCATCTaGTTGGACTGGCAATTGCTT +
Preference number: 5 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPCVEAI*LDWQLL
Trigger: AAGCAATTGCCAGTCCAACAAGATGGCTTCCACACA...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGGGGAGAGGCCCAGGCGCCCTGGTCCTGGATTGGTCCAGCCACTGTGGTCCCTAGGAGTTTCCAGCTGTaGGCCTTGAGTTGTTGTAGT +
Preference number: 5 (lower is better)
Translates to: RGEAQAPWSWIGPATVVPRSFQL*ALSCCS
Trigger: ACTACAACAACTCAAGGCCAACAGCTGGAAACTCCT...AGGGACCACAGTGGCTGGACCAATCCAGGACCAGGGCGCCTGGGCCTCTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS GCA 90 bp TGGGACTCAAGCTCCCCAAACACGGACCCGCACACGGCCTCCAGCTaGTGGTTAAACTCTTCGCTTAGCTGTCCAGTTGTGAGGGAACGG +
Preference number: 5 (lower is better)
Translates to: WDSSSPNTDPHTASS*WLNSSLSCPVVRER
Trigger: CCGTTCCCTCACAACTGGACAGCTAAGCGAAGAGTTTAACCAGCAGCTGGAGGCCGTGTGCGGGTCCGTGTTTGGGGAGCTTGAGTCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGTGTAGTTCCAGGAACTaGAGGGTCACATCCTCAATG +
Preference number: 5 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSCSSRN*RVTSSM
Trigger: CATTGAGGATGTGACCCTCAAGTTCCTGGAACTACA...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS-3UTR CAA 90 bp AGTGACCTCGACGCTGGGTGTACAGTACGGGTAGAAAACCGCGGGCCCGGGTCGAGGAGTTTCCAGCTGTaGGCCTTGAGTTGTTGTAGT +
Preference number: 5 (lower is better)
Translates to: SDLDAGCTVRVENRGPGSRSFQL*ALSCCS
Trigger: ACTACAACAACTCAAGGCCAACAGCTGGAAACTCCT...CGACCCGGGCCCGCGGTTTTCTACCCGTACTGTACACCCAGCGTCGAGGTCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046659.14
ENSMUST00000106094.9
CDS GCA 72 bp GGCTCGGGGTGGCACCGGTGCCAACTCGAGGGTGCGTaGGCCCATGGTGGGGCCGTCCAGCCCGTCCGCGGA +
Preference number: 6 (lower is better)
Translates to: GSGWHRCQLEGA*AHGGAVQPVRG
Trigger: TCCGCGGACGGGCTGGACGGCCCCACCATGGGCGCACGCACCCTCGAGTTGGCACCGGTGCCACCCCGAGCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp GCACCGGTGCCAACTCGAGGGTGCGTGCGCCCATGGTaGGGCCGTCCAGCCCGTCCGCGGAGCTGCAGCGCC +
Preference number: 6 (lower is better)
Translates to: APVPTRGCVRPW*GRPARPRSCSA
Trigger: GGCGCTGCAGCTCCGCGGACGGGCTGGACGGCCCCACCATGGGCGCACGCACCCTCGAGTTGGCACCGGTGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp CCCGTCCGCGGAGCTGCAGCGCCGGGCCGGGCCCTCTaGTGCGGTGAAGCTCTCGTGGGCAGAGTCGGTGCT +
Preference number: 6 (lower is better)
Translates to: PVRGAAAPGRAL*CGEALVGRVGA
Trigger: AGCACCGACTCTGCCCACGAGAGCTTCACCGCAGCAGAGGGCCCGGCCCGGCGCTGCAGCTCCGCGGACGGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp GACTGGCTCGGGGTGGCACCGGTGCCAACTCGAGGGTaGGTGCGCCCATGGTGGGGCCGTCCAGCCCGTCCG +
Preference number: 6 (lower is better)
Translates to: DWLGVAPVPTRG*VRPWWGRPARP
Trigger: CGGACGGGCTGGACGGCCCCACCATGGGCGCACGCACCCTCGAGTTGGCACCGGTGCCACCCCGAGCCAGTC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp GTGGCACCGGTGCCAACTCGAGGGTGCGTGCGCCCATaGTGGGGCCGTCCAGCCCGTCCGCGGAGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: VAPVPTRGCVRP*WGRPARPRSCS
Trigger: GCTGCAGCTCCGCGGACGGGCTGGACGGCCCCACCATGGGCGCACGCACCCTCGAGTTGGCACCGGTGCCAC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp GTGGGGGCCCGAGGGCCGGGCTGGGGCTCAGAGGCGTaGCTCTGGAAGGAGCGTCCGAACTGCAGGGCCTTG +
Preference number: 6 (lower is better)
Translates to: VGARGPGWGSEA*LWKERPNCRAL
Trigger: CAAGGCCCTGCAGTTCGGACGCTCCTTCCAGAGGCACGCCTCTGAGCCCCAGCCCGGCCCTCGGGCCCCCAC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp CCTCGCGGTAGGCCCACTGGCCCTGTGTGTGGACCGTaGGGAAGACTGAGTAGGTGGGGGCCCGAGGGCCGG +
Preference number: 6 (lower is better)
Translates to: PRGRPTGPVCGP*GRLSRWGPEGR
Trigger: CCGGCCCTCGGGCCCCCACCTACTCAGTCTTCCGCACGGTCCACACACAGGGCCAGTGGGCCTACCGCGAGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp CGCCGGGCCGGGCCCTCTGCTGCGGTGAAGCTCTCGTaGGCAGAGTCGGTGCTGCTCTGGGCGGTGATGGAG +
Preference number: 6 (lower is better)
Translates to: RRAGPSAAVKLS*AESVLLWAVME
Trigger: CTCCATCACCGCCCAGAGCAGCACCGACTCTGCCCACGAGAGCTTCACCGCAGCAGAGGGCCCGGCCCGGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS TCA 72 bp AGCTCTCGTGGGCAGAGTCGGTGCTGCTCTGGGCGGTaGTGGAGATGCGGGGTGGGGCCTGGCTTCCCGGCG +
Preference number: 6 (lower is better)
Translates to: SSRGQSRCCSGR*WRCGVGPGFPA
Trigger: CGCCGGGAAGCCAGGCCCCACCCCGCATCTCCATCACCGCCCAGAGCAGCACCGACTCTGCCCACGAGAGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp CCAGGCCAGCTCTCGGAGCACAGAAGCGGGGCTCGGTaGAGAAGGCCTCCCTGGAGCCCAGCAGGTACGGGG +
Preference number: 6 (lower is better)
Translates to: PGQLSEHRSGAR*RRPPWSPAGTG
Trigger: CCCCGTACCTGCTGGGCTCCAGGGAGGCCTTCTCCACCGAGCCCCGCTTCTGTGCTCCGAGAGCTGGCCTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp AGGCGACCCATCGGTGGCCGGCGGCTCATACGGCAGTaGGTAGCCCTCGCGGTAGGCCCACTGGCCCTGTGT +
Preference number: 6 (lower is better)
Translates to: RRPIGGRRLIRQ*VALAVGPLALC
Trigger: ACACAGGGCCAGTGGGCCTACCGCGAGGGCTACCCACTGCCGTATGAGCCGCCGGCCACCGATGGGTCGCCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CAA 90 bp CAGCAGGTACGGGGCCCTGGCAGCTGGGCCCACGTCCATATGCTGTaGGTCAGCAAAGCGGGCTGGGCGGGGATGGCTGCCTCGGTCGCC +
Preference number: 6 (lower is better)
Translates to: QQVRGPGSWAHVHML*VSKAGWAGMAASVA
Trigger: GGCGACCGAGGCAGCCATCCCCGCCCAGCCCGCTTTGCTGACCAACAGCATATGGACGTGGGCCCAGCTGCCAGGGCCCCGTACCTGCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CAA 90 bp GGCTCAGAGGCGTGCCTCTGGAAGGAGCGTCCGAACTGCAGGGCCTaGTCTTCTGTGGCCACAGTGGCCAGGCCGGCCAGGCCCTCCAGC +
Preference number: 6 (lower is better)
Translates to: GSEACLWKERPNCRA*SSVATVARPARPSS
Trigger: GCTGGAGGGCCTGGCCGGCCTGGCCACTGTGGCCACAGAAGACAAGGCCCTGCAGTTCGGACGCTCCTTCCAGAGGCACGCCTCTGAGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp CTGCACCCCAATGGACGGCCGCCACTTCCGCTGTCGTaGCAAGCTCCGCAGCTCCTCCCGGCCAGGGATGGT +
Preference number: 6 (lower is better)
Translates to: LHPNGRPPLPLS*QAPQLLPARDG
Trigger: ACCATCCCTGGCCGGGAGGAGCTGCGGAGCTTGGCACGACAGCGGAAGTGGCGGCCGTCCATTGGGGTGCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp CTCTGGACCCAGGAGCCCCTTGCCTGGCCCGGCCCCTaGGTATCCATCCCGGCCCTGGCTGACCATCATGGT +
Preference number: 6 (lower is better)
Translates to: LWTQEPLAWPGP*VSIPALADHHG
Trigger: ACCATGATGGTCAGCCAGGGCCGGGATGGATACCCAGGGGCCGGGCCAGGCAAGGGGCTCCTGGGTCCAGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp GCCCGAGGGCCGGGCTGGGGCTCAGAGGCGTGCCTCTaGAAGGAGCGTCCGAACTGCAGGGCCTTGTCTTCT +
Preference number: 6 (lower is better)
Translates to: ARGPGWGSEACL*KERPNCRALSS
Trigger: AGAAGACAAGGCCCTGCAGTTCGGACGCTCCTTCCAGAGGCACGCCTCTGAGCCCCAGCCCGGCCCTCGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp GGGGGCAGCGCCAGATCCAGGTCCAGGACCAGGCCCTaGTGGACCTCGCTGGTATGGGAGTGTGTGGAAGCC +
Preference number: 6 (lower is better)
Translates to: GGSARSRSRTRP*WTSLVWECVEA
Trigger: GGCTTCCACACACTCCCATACCAGCGAGGTCCAGCAGGGCCTGGTCCTGGACCTGGATCTGGCGCTGCCCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp GTGGGAGGCAGTCGGGTGGCACCCTTGCCCTGTGGGTaGCCCACACAGTCTTCACAGGTGTCGAAGGGGCCC +
Preference number: 6 (lower is better)
Translates to: VGGSRVAPLPCG*PTQSSQVSKGP
Trigger: GGGCCCCTTCGACACCTGTGAAGACTGTGTGGGCCACCCACAGGGCAAGGGTGCCACCCGACTGCCTCCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp GCGGTGAAGCTCTCGTGGGCAGAGTCGGTGCTGCTCTaGGCGGTGATGGAGATGCGGGGTGGGGCCTGGCTT +
Preference number: 6 (lower is better)
Translates to: AVKLSWAESVLL*AVMEMRGGAWL
Trigger: AAGCCAGGCCCCACCCCGCATCTCCATCACCGCCCAGAGCAGCACCGACTCTGCCCACGAGAGCTTCACCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp CTTCACCGGCACGCCCCGCCCCCGCGAGGGCTTCTTTaGTATCGGCGGAGGGACCTTCTTCTCCTCCTTCGG +
Preference number: 6 (lower is better)
Translates to: LHRHAPPPRGLL*YRRRDLLLLLR
Trigger: CCGAAGGAGGAGAAGAAGGTCCCTCCGCCGATACCAAAGAAGCCCTCGCGGGGGCGGGGCGTGCCGGTGAAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CAA 72 bp GCGTGCCTCTGGAAGGAGCGTCCGAACTGCAGGGCCTaGTCTTCTGTGGCCACAGTGGCCAGGCCGGCCAGG +
Preference number: 6 (lower is better)
Translates to: ACLWKERPNCRA*SSVATVARPAR
Trigger: CCTGGCCGGCCTGGCCACTGTGGCCACAGAAGACAAGGCCCTGCAGTTCGGACGCTCCTTCCAGAGGCACGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp CTCCCTGGAGCCCAGCAGGTACGGGGCCCTGGCAGCTaGGCCCACGTCCATATGCTGTTGGTCAGCAAAGCG +
Preference number: 6 (lower is better)
Translates to: LPGAQQVRGPGS*AHVHMLLVSKA
Trigger: CGCTTTGCTGACCAACAGCATATGGACGTGGGCCCAGCTGCCAGGGCCCCGTACCTGCTGGGCTCCAGGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp AGAAGGCCTCCCTGGAGCCCAGCAGGTACGGGGCCCTaGCAGCTGGGCCCACGTCCATATGCTGTTGGTCAG +
Preference number: 6 (lower is better)
Translates to: RRPPWSPAGTGP*QLGPRPYAVGQ
Trigger: CTGACCAACAGCATATGGACGTGGGCCCAGCTGCCAGGGCCCCGTACCTGCTGGGCTCCAGGGAGGCCTTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp GGCTCAGAGGCGTGCCTCTGGAAGGAGCGTCCGAACTaGAGGGCCTTGTCTTCTGTGGCCACAGTGGCCAGG +
Preference number: 6 (lower is better)
Translates to: GSEACLWKERPN*RALSSVATVAR
Trigger: CCTGGCCACTGTGGCCACAGAAGACAAGGCCCTGCAGTTCGGACGCTCCTTCCAGAGGCACGCCTCTGAGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp GCCCACGTCCATATGCTGTTGGTCAGCAAAGCGGGCTaGGCGGGGATGGCTGCCTCGGTCGCCATGGTAACC +
Preference number: 6 (lower is better)
Translates to: AHVHMLLVSKAG*AGMAASVAMVT
Trigger: GGTTACCATGGCGACCGAGGCAGCCATCCCCGCCCAGCCCGCTTTGCTGACCAACAGCATATGGACGTGGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp GAGTGTGGGAGGCAGTCGGGTGGCACCCTTGCCCTGTaGGTGGCCCACACAGTCTTCACAGGTGTCGAAGGG +
Preference number: 6 (lower is better)
Translates to: ECGRQSGGTLAL*VAHTVFTGVEG
Trigger: CCCTTCGACACCTGTGAAGACTGTGTGGGCCACCCACAGGGCAAGGGTGCCACCCGACTGCCTCCCACACTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp GGCAGCGCCAGATCCAGGTCCAGGACCAGGCCCTGCTaGACCTCGCTGGTATGGGAGTGTGTGGAAGCCATC +
Preference number: 6 (lower is better)
Translates to: GSARSRSRTRPC*TSLVWECVEAI
Trigger: GATGGCTTCCACACACTCCCATACCAGCGAGGTCCAGCAGGGCCTGGTCCTGGACCTGGATCTGGCGCTGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CAA 72 bp GTCTGGTGTCGCCCATCCCCCTTGCGGTCCTTGCTCTaGCTCCGTTTGCCATGCCGGGACTGGTGGTGGTGG +
Preference number: 6 (lower is better)
Translates to: VWCRPSPLRSLL*LRLPCRDWWWW
Trigger: CCACCACCACCAGTCCCGGCATGGCAAACGGAGCAAGAGCAAGGACCGCAAGGGGGATGGGCGACACCAGAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS TCA 72 bp CAAGGCAGCGGCCTTCCGACCCGCCCGAACGCCCCTTaGAGCTCAAGTCCCTGTAGGACCCATCTGGAGCAT +
Preference number: 6 (lower is better)
Translates to: QGSGLPTRPNAP*SSSPCRTHLEH
Trigger: ATGCTCCAGATGGGTCCTACAGGGACTTGAGCTTCAAGGGGCGTTCGGGCGGGTCGGAAGGCCGCTGCCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp CCTTGGTCTGGTGTCGCCCATCCCCCTTGCGGTCCTTaGTCTTGCTCCGTTTGCCATGCCGGGACTGGTGGT +
Preference number: 6 (lower is better)
Translates to: PWSGVAHPPCGP*SCSVCHAGTGG
Trigger: ACCACCAGTCCCGGCATGGCAAACGGAGCAAGAGCAAGGACCGCAAGGGGGATGGGCGACACCAGACCAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CAA 90 bp TGCTGGCACCAGTGTTCCAGTTTCTCCACCTCTGCCCGCAGCATCTaGATGAACCACTCGCCATCCCGTGGGCAGGGGGACGTGCGGCCT +
Preference number: 6 (lower is better)
Translates to: CWHQCSSFSTSARSI*MNHSPSRGQGDVRP
Trigger: AGGCCGCACGTCCCCCTGCCCACGGGATGGCGAGTGGTTCATCAAGATGCTGCGGGCAGAGGTGGAGAAACTGGAACACTGGTGCCAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS TCA 72 bp CTGCCTGCACACCGGCTGTCACGCTGTTGGAGCGCTTaGACCTCGCCCGCCTCTTGTCCTCTTCCACCTGAA +
Preference number: 6 (lower is better)
Translates to: LPAHRLSRCWSA*TSPASCPLPPE
Trigger: TTCAGGTGGAAGAGGACAAGAGGCGGGCGAGGTTCAAGCGCTCCAACAGCGTGACAGCCGGTGTGCAGGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp GCACCTGCAAATAGTGATAAGTCCTGGCTTTGGCCTTaGTCTCTGGACCCAGGAGCCCCTTGCCTGGCCCGG +
Preference number: 6 (lower is better)
Translates to: APANSDKSWLWP*SLDPGAPCLAR
Trigger: CCGGGCCAGGCAAGGGGCTCCTGGGTCCAGAGACCAAGGCCAAAGCCAGGACTTATCACTATTTGCAGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CAA 90 bp CCATCCCGGCCCTGGCTGACCATCATGGTATGCCAGGCACTTCGCTaGACTGACTGTCCATCCAGGGACATGGACATGCCAGTGCAGGCA +
Preference number: 6 (lower is better)
Translates to: PSRPWLTIMVCQALR*TDCPSRDMDMPVQA
Trigger: TGCCTGCACTGGCATGTCCATGTCCCTGGATGGACAGTCAGTCAAGCGAAGTGCCTGGCATACCATGATGGTCAGCCAGGGCCGGGATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp AGGTCCAGGACCAGGCCCTGCTGGACCTCGCTGGTATaGGAGTGTGTGGAAGCCATCTTGTTGGACTGGCAA +
Preference number: 6 (lower is better)
Translates to: RSRTRPCWTSLV*ECVEAILLDWQ
Trigger: TTGCCAGTCCAACAAGATGGCTTCCACACACTCCCATACCAGCGAGGTCCAGCAGGGCCTGGTCCTGGACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CAA 72 bp AGGAACGGCGGGAGGCAAAGCGTCGGGCAAGTGCTTTaGGAGACGTCTTGGGGCTACCATCTGAGTCTCCAC +
Preference number: 6 (lower is better)
Translates to: RNGGRQSVGQVL*ETSWGYHLSLH
Trigger: GTGGAGACTCAGATGGTAGCCCCAAGACGTCTCCAAAAGCACTTGCCCGACGCTTTGCCTCCCGCCGTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp AGCTCCCCAAACACGGACCCGCACACGGCCTCCAGCTaGTGGTTAAACTCTTCGCTTAGCTGTCCAGTTGTG +
Preference number: 6 (lower is better)
Translates to: SSPNTDPHTASS*WLNSSLSCPVV
Trigger: CACAACTGGACAGCTAAGCGAAGAGTTTAACCAGCAGCTGGAGGCCGTGTGCGGGTCCGTGTTTGGGGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp CATCTGCTGGCACCAGTGTTCCAGTTTCTCCACCTCTaGCCGCAGCATCTTGATGAACCACTCGCCATCCCG +
Preference number: 6 (lower is better)
Translates to: HLLAPVFQFLHL*PQHLDEPLAIP
Trigger: CGGGATGGCGAGTGGTTCATCAAGATGCTGCGGGCAGAGGTGGAGAAACTGGAACACTGGTGCCAGCAGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS TCA 72 bp GAATTCTCTTCGACTCCTGTTCTCGGTGTCCGAGTCTaGGATTGTCTCCACCTGCACCCCAATGGACGGCCG +
Preference number: 6 (lower is better)
Translates to: EFSSTPVLGVRV*DCLHLHPNGRP
Trigger: CGGCCGTCCATTGGGGTGCAGGTGGAGACAATCTCAGACTCGGACACCGAGAACAGGAGTCGAAGAGAATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CAA 72 bp CCCTGGCTGACCATCATGGTATGCCAGGCACTTCGCTaGACTGACTGTCCATCCAGGGACATGGACATGCCA +
Preference number: 6 (lower is better)
Translates to: PWLTIMVCQALR*TDCPSRDMDMP
Trigger: TGGCATGTCCATGTCCCTGGATGGACAGTCAGTCAAGCGAAGTGCCTGGCATACCATGATGGTCAGCCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp CCAGGCCCTGCTGGACCTCGCTGGTATGGGAGTGTGTaGAAGCCATCTTGTTGGACTGGCAATTGCTTTTCA +
Preference number: 6 (lower is better)
Translates to: PGPAGPRWYGSV*KPSCWTGNCFS
Trigger: TGAAAAGCAATTGCCAGTCCAACAAGATGGCTTCCACACACTCCCATACCAGCGAGGTCCAGCAGGGCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS CCA 72 bp TCGCCCGCCTCTTGTCCTCTTCCACCTGAACGCCAATaGAGTGGAATTCTCTTCGACTCCTGTTCTCGGTGT +
Preference number: 6 (lower is better)
Translates to: SPASCPLPPERQ*SGILFDSCSRC
Trigger: ACACCGAGAACAGGAGTCGAAGAGAATTCCACTCCATTGGCGTTCAGGTGGAAGAGGACAAGAGGCGGGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp TCTGAGACAGGAGAAGTTGCGTACTGCCCACGGCACTaGGAATCTTCTCTAAGATCTCCTCGGGCAGCTCAT +
Preference number: 6 (lower is better)
Translates to: SETGEVAYCPRH*ESSLRSPRAAH
Trigger: ATGAGCTGCCCGAGGAGATCTTAGAGAAGATTCGCAGTGCCGTGGGCAGTACGCAACTTCTCCTGTCTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9
CDS GCA 72 bp ACTGCTGGACCTTCTGAGACAGGAGAAGTTGCGTACTaGCCACGGCACTGCGAATCTTCTCTAAGATCTCCT +
Preference number: 6 (lower is better)
Translates to: TAGPSETGEVAY*PRHCESSLRSP
Trigger: AGGAGATCTTAGAGAAGATTCGCAGTGCCGTGGGCAGTACGCAACTTCTCCTGTCTCAGAAGGTCCAGCAGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046659.14
ENSMUST00000106092.2
ENSMUST00000106094.9