Pregenerated sensors for DLD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020664Ensembl transcript IDs: ENSMUST00000110857.5
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCATTTACTAAGATTAAAAACATTACTAAGCCAAGGAGATCCACATaGAAACTACAGCACACAAGAGCTTCGCTTACCCCTTCAGCACAG | + |
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Preference number: 1 (lower is better) Translates to: PFTKIKNITKPRRST*KLQHTRASLTPSAQ Trigger: CTGTGCTGAAGGGGTAAGCGAAGCTCTTGTGTGCTGTAGTTTCCATGTGGATCTCCTTGGCTTAGTAATGTTTTTAATCTTAGTAAATGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| 3UTR-3UTR CCA 90 bp | TGTGAACACTCAGTGCTGCAGATGCGACAATTCAAAATAAAAGGTAATCGGAGGGGTGTCTTCATTCCCTaGTATAATCATGAGTCTCCA | + |
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Preference number: 2 (lower is better) Translates to: CEHSVLQMRQFKIKGNRRGVFIP*YNHESP Trigger: TGGAGACTCATGATTATACCAGGGAATGAAGACACC...CCTCCGATTACCTTTTATTTTGAATTGTCGCATCTGCAGCACTGAGTGTTCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| 3UTR-3UTR CCA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTCATCCTGCAAATTCTTaGAACTGGAAGATTATCCTG | + |
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Preference number: 2 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSHPANS*NWKIIL Trigger: CAGGATAATCTTCCAGTTCCAAGAATTTGCAGGATG...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| 3UTR-3UTR CCA 90 bp | CAGCTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTGCAAATTCTTGGAACTaGAAGATTATCCTGTTCAAA | + |
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Preference number: 2 (lower is better) Translates to: QLLPVNRFTSTKLEVKSIANSWN*KIILFK Trigger: TTTGAACAGGATAATCTTCCAGTTCCAAGAATTTGC...AATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAGCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| 3UTR-3UTR TCA 90 bp | AATCTCGTAGACAGTATGAAAACAGGTCAAAACTTTCCAGGATTCTTCTATATGCTGGAACAAGATACGTaGAATATAGGTACATGGTTA | + |
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Preference number: 2 (lower is better) Translates to: NLVDSMKTGQNFPGFFYMLEQDT*NIGTWL Trigger: TAACCATGTACCTATATTTCACGTATCTTGTTCCAG...CATATAGAAGAATCCTGGAAAGTTTTGACCTGTTTTCATACTGTCTACGAGATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| 3UTR TCA 72 bp | AGGTTAGTAGTTACTGTAAAGGAAATGAAAGGGCAGTaGCCACACCAACAACTTAGTACTGTTGGACAGTGT | + |
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Preference number: 3 (lower is better) Translates to: RLVVTVKEMKGQ*PHQQLSTVGQC Trigger: ACACTGTCCAACAGTACTAAGTTGTTGGTGTGGTCACTGCCCTTTCATTTCCTTTACAGTAACTACTAACCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| 3UTR-3UTR CAA 90 bp | TGTGAACACTCAGTGCTGCAGATGCGACAATTCAAAATAAAAGGTAATCGGAGGTCATCCTGCAAATTCTaGGAACTGGAAGATTATCCT | + |
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Preference number: 3 (lower is better) Translates to: CEHSVLQMRQFKIKGNRRSSCKF*ELEDYP Trigger: AGGATAATCTTCCAGTTCCAAGAATTTGCAGGATGA...CCTCCGATTACCTTTTATTTTGAATTGTCGCATCTGCAGCACTGAGTGTTCACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | TGTGAACACTCAGTGCTGCAGATGCGACAATTCAAAATAAAAGGTAATCGGAGGTCTAGTCCCAAATTCTaGGTAAAGGGCCGCCGACCA | + |
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Preference number: 4 (lower is better) Translates to: CEHSVLQMRQFKIKGNRRSSPKF*VKGRRP Trigger: TGGTCGGCGGCCCTTTACTCAGAATTTGGGACTAGA...CCTCCGATTACCTTTTATTTTGAATTGTCGCATCTGCAGCACTGAGTGTTCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | TGTGAACACTCAGTGCTGCAGATGCGACAATTCAAAATAAAAGGTAATCGGAGGTCATCTTCTGCTTTGTaGGCCAACATTGGACCAGCG | + |
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Preference number: 4 (lower is better) Translates to: CEHSVLQMRQFKIKGNRRSSSAL*ANIGPA Trigger: CGCTGGTCCAATGTTGGCTCACAAAGCAGAAGATGA...CCTCCGATTACCTTTTATTTTGAATTGTCGCATCTGCAGCACTGAGTGTTCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | TGTGAACACTCAGTGCTGCAGATGCGACAATTCAAAATAAAAGGTAATCGGAGGTCCCTTCAACACAGATaGTGCCTTCATCTTCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: CEHSVLQMRQFKIKGNRRSLQHR*CLHLLL Trigger: AAGCAGAAGATGAAGGCATCATCTGTGTTGAAGGGA...CCTCCGATTACCTTTTATTTTGAATTGTCGCATCTGCAGCACTGAGTGTTCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTAGGGCCGCCGACCAATaGAAACCAAGAGTACATCAC | + |
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Preference number: 4 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSRAADQ*KPRVHH Trigger: GTGATGTACTCTTGGTTTGCATTGGTCGGCGGCCCT...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CCA 90 bp | CAGCTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTTTTGTGAGCCAACATTaGACCAGCGACCACATCTCC | + |
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Preference number: 4 (lower is better) Translates to: QLLPVNRFTSTKLEVKSIFVSQH*TSDHIS Trigger: GGAGATGTGGTCGCTGGTCCAATGTTGGCTCACAAA...AATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAGCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | CAGCTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTCTAACTGGGCAGATTTaGTGGCAGCAACATATCCTC | + |
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Preference number: 4 (lower is better) Translates to: QLLPVNRFTSTKLEVKSILTGQI*WQQHIL Trigger: GAGGATATGTTGCTGCCATCAAATCTGCCCAGTTAG...AATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | TGTGAACACTCAGTGCTGCAGATGCGACAATTCAAAATAAAAGGTAATCGGAGGACCCAAAAATTCAACTaGTGTCACATCTGCACCAAG | + |
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Preference number: 4 (lower is better) Translates to: CEHSVLQMRQFKIKGNRRTQKFN*CHICTK Trigger: CTTGGTGCAGATGTGACAGCAGTTGAATTTTTGGGT...CCTCCGATTACCTTTTATTTTGAATTGTCGCATCTGCAGCACTGAGTGTTCACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | TGTGAACACTCAGTGCTGCAGATGCGACAATTCAAAATAAAAGGTAATCGGAGGCAAGAATCTTCACCATaGCATCTGTGTCAGCATTTG | + |
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Preference number: 4 (lower is better) Translates to: CEHSVLQMRQFKIKGNRRQESSP*HLCQHL Trigger: CAAATGCTGACACAGATGGCATGGTGAAGATTCTTG...CCTCCGATTACCTTTTATTTTGAATTGTCGCATCTGCAGCACTGAGTGTTCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | CAGCTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAAGTCTTTGCCAAACTaGACCCAGTTCCACACCAAT | + |
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Preference number: 4 (lower is better) Translates to: QLLPVNRFTSTKLEVKSIKSLPN*TQFHTN Trigger: ATTGGTGTGGAACTGGGTTCAGTTTGGCAAAGACTT...AATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | AATCTCGTAGACAGTATGAAAACAGGTCAAAACTTTCCAGGATTCTTCTATATGACTGTTCTTCCGATTTaGCAACCCAAGCAACCTCGG | + |
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Preference number: 4 (lower is better) Translates to: NLVDSMKTGQNFPGFFYMTVLPI*QPKQPR Trigger: CCGAGGTTGCTTGGGTTGGCAAATCGGAAGAACAGT...CATATAGAAGAATCCTGGAAAGTTTTGACCTGTTTTCATACTGTCTACGAGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | CTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAGTACTCCTTGTAGGCCATaGGATATCCGATTGAAATGG | + |
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Preference number: 4 (lower is better) Translates to: LLPVNRFTSTKLEVKSISTPCRP*DIRLKW Trigger: CCATTTCAATCGGATATCTCATGGCCTACAAGGAGT...ACTAATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | CTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAGTTTGGTATCAATAACCTaGGTGCTGCCATCGGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: LLPVNRFTSTKLEVKSISLVSIT*VLPSAF Trigger: AAAAGCCGATGGCAGCACTCAGGTTATTGATACCAA...ACTAATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTCACACCAATTACTCCTaGCCCAATAACAACCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSHTNYS*PNNNQL Trigger: AAGCTGGTTGTTATTGGGGCAGGAGTAATTGGTGTG...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | AATCTCGTAGACAGTATGAAAACAGGTCAAAACTTTCCAGGATTCTTCTATATGTCTGCACCAAGTCTTTaGCAAACTGAACCCAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: NLVDSMKTGQNFPGFFYMSAPSL*QTEPSS Trigger: GGAACTGGGTTCAGTTTGGCAAAGACTTGGTGCAGA...CATATAGAAGAATCCTGGAAAGTTTTGACCTGTTTTCATACTGTCTACGAGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTAACTGCTGTCACATCTaGACCAAGTCTTTGCCAAAC | + |
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Preference number: 4 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSNCCHI*TKSLPN Trigger: GTTTGGCAAAGACTTGGTGCAGATGTGACAGCAGTT...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | CTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAGTGATGCCTTCATCTTCTaGTTTGTGAGCCAACATTGG | + |
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Preference number: 4 (lower is better) Translates to: LLPVNRFTSTKLEVKSISDAFIF*FVSQHW Trigger: CCAATGTTGGCTCACAAAGCAGAAGATGAAGGCATC...ACTAATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | CAGCTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTTGGTTTTCCAAAAGCTaGAGCCAAGTTTGCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: QLLPVNRFTSTKLEVKSIWFSKS*SQVCFS Trigger: AGAGAAGCAAACTTGGCTGCAGCTTTTGGAAAACCA...AATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CCA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTGATATCCGATTGAAATaGCCTTTCTTGGCCAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSDIRLK*PFLAKE Trigger: CTCCTTGGCCAAGAAAGGCCATTTCAATCGGATATC...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | AATCTCGTAGACAGTATGAAAACAGGTCAAAACTTTCCAGGATTCTTCTATATGAAAAGGAGTAACTTCTaGGCCCGTAGCTACAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: NLVDSMKTGQNFPGFFYMKRSNF*ARSYKD Trigger: ATCCTTGTAGCTACGGGCTCAGAAGTTACTCCTTTT...CATATAGAAGAATCCTGGAAAGTTTTGACCTGTTTTCATACTGTCTACGAGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | AATCTCGTAGACAGTATGAAAACAGGTCAAAACTTTCCAGGATTCTTCTATATGCCAATTCCACCCACATaGCCCAAAAATTCAACTGCT | + |
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Preference number: 4 (lower is better) Translates to: NLVDSMKTGQNFPGFFYMPIPPT*PKNSTA Trigger: AGCAGTTGAATTTTTGGGTCATGTGGGTGGAATTGG...CATATAGAAGAATCCTGGAAAGTTTTGACCTGTTTTCATACTGTCTACGAGATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | CTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAGTATCAATTTTTCCATCTaGCTTCTTGGTGGCACCAGT | + |
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Preference number: 4 (lower is better) Translates to: LLPVNRFTSTKLEVKSISINFSI*LLGGTS Trigger: ACTGGTGCCACCAAGAAGTCAGATGGAAAAATTGAT...ACTAATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | CTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAGTGCTTTTACTGCAGAATaGTTCTGCTCCATCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: LLPVNRFTSTKLEVKSISAFTAE*FCSIIF Trigger: GAAGATGATGGAGCAGAAGCATTCTGCAGTAAAAGC...ACTAATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | CTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAGTTTTAGCTCTGCTGTTTaGAGCAAAGGGGAATTTTCC | + |
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Preference number: 4 (lower is better) Translates to: LLPVNRFTSTKLEVKSISFSSAV*SKGEFS Trigger: GGAAAATTCCCCTTTGCTGCAAACAGCAGAGCTAAA...ACTAATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | CAGCTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTCCAAATCCATTGACGTaGACAACCTTATTTTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: QLLPVNRFTSTKLEVKSIPNPLT*TTLFCL Trigger: CAAACAAAATAAGGTTGTTCACGTCAATGGATTTGG...AATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR GCA 90 bp | CTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAGTACTGCAGAATGCTTCTaGTCCATCATCTTCTCTAAA | + |
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Preference number: 4 (lower is better) Translates to: LLPVNRFTSTKLEVKSISTAECF*SIIFSK Trigger: TTTAGAGAAGATGATGGAGCAGAAGCATTCTGCAGT...ACTAATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTCAACCTTATTTTGTTTaGATAAGTGAGCAATTCCCC | + |
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Preference number: 4 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSQPYFV*ISEQFP Trigger: GGGGAATTGCTCACTTATTCAAACAAAATAAGGTTG...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR TCA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTGTGTGTGTAAATCACTaGTGGCACACAATTATAATC | + |
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Preference number: 4 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSVCVNH*WHTIII Trigger: GATTATAATTGTGTGCCATCAGTGATTTACACACAC...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CCA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTATTCAAGCGAACTTCTaGTATTTCAATTCCCCTAGA | + |
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Preference number: 4 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSIQANF*YFNSPR Trigger: TCTAGGGGAATTGAAATACCAGAAGTTCGCTTGAAT...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CCA 90 bp | CTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAGTCTGGAATTCTACCTTTaGGATCTAGTTCAATTCCAA | + |
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Preference number: 4 (lower is better) Translates to: LLPVNRFTSTKLEVKSISLEFYL*DLVQFQ Trigger: TTGGAATTGAACTAGATCCCAAAGGTAGAATTCCAG...ACTAATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CCA 90 bp | CTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAGTAAATCTGTTATTGACTaGAATTCTACCTTTGGGATC | + |
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Preference number: 4 (lower is better) Translates to: LLPVNRFTSTKLEVKSISKSVID*NSTFGI Trigger: GATCCCAAAGGTAGAATTCCAGTCAATAACAGATTT...ACTAATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS GCA 90 bp | AGCACCGCCGGCCATCCCTTCAACACAGATGATGCCTTCATCTTCTaGTTTGTGAGCCAACATTGGACCAGCGACCACATCTCCAATAGC | + |
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Preference number: 5 (lower is better) Translates to: STAGHPFNTDDAFIF*FVSQHWTSDHISNS Trigger: GCTATTGGAGATGTGGTCGCTGGTCCAATGTTGGCTCACAAAGCAGAAGATGAAGGCATCATCTGTGTTGAAGGGATGGCCGGCGGTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 90 bp | TATAATCAATGTGCACAGCACCGCCGGCCATCCCTTCAACACAGATaGTGCCTTCATCTTCTGCTTTGTGAGCCAACATTGGACCAGCGA | + |
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Preference number: 5 (lower is better) Translates to: YNQCAQHRRPSLQHR*CLHLLLCEPTLDQR Trigger: TCGCTGGTCCAATGTTGGCTCACAAAGCAGAAGATGAAGGCATCATCTGTGTTGAAGGGATGGCCGGCGGTGCTGTGCACATTGATTATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 90 bp | TTCCGATTTGCCAACCCAAGCAACCTCGGGGTGTGTGTAAATCACTaGTGGCACACAATTATAATCAATGTGCACAGCACCGCCGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: FRFANPSNLGVCVNH*WHTIIINVHSTAGH Trigger: ATGGCCGGCGGTGCTGTGCACATTGATTATAATTGTGTGCCATCAGTGATTTACACACACCCCGAGGTTGCTTGGGTTGGCAAATCGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CAA 90 bp | TGTGAACACTCAGTGCTGCAGATGCGACAATTCAAAATAAAAGGTAATCGGAGGCTTTGTGAGCCAACATaGGACCAGCGACCACATCTC | + |
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Preference number: 5 (lower is better) Translates to: CEHSVLQMRQFKIKGNRRLCEPT*DQRPHL Trigger: GAGATGTGGTCGCTGGTCCAATGTTGGCTCACAAAG...CCTCCGATTACCTTTTATTTTGAATTGTCGCATCTGCAGCACTGAGTGTTCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 90 bp | CCTTTGGGATCTAGTTCAATTCCAAGCTCTTCTAGTCCCAAATTCTaGGTAAAGGGCCGCCGACCAATGCAAACCAAGAGTACATCACAA | + |
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Preference number: 5 (lower is better) Translates to: PLGSSSIPSSSSPKF*VKGRRPMQTKSTSQ Trigger: TTGTGATGTACTCTTGGTTTGCATTGGTCGGCGGCCCTTTACTCAGAATTTGGGACTAGAAGAGCTTGGAATTGAACTAGATCCCAAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CAA 90 bp | TGTGAACACTCAGTGCTGCAGATGCGACAATTCAAAATAAAAGGTAATCGGAGGCCTAACTGGGCAGATTaGATGGCAGCAACATATCCT | + |
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Preference number: 5 (lower is better) Translates to: CEHSVLQMRQFKIKGNRRPNWAD*MAATYP Trigger: AGGATATGTTGCTGCCATCAAATCTGCCCAGTTAGG...CCTCCGATTACCTTTTATTTTGAATTGTCGCATCTGCAGCACTGAGTGTTCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CAA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTTTGAAATGGCCTTTCTaGGCCAAGGAGCGGTACACA | + |
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Preference number: 5 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSLKWPF*AKERYT Trigger: TGTGTACCGCTCCTTGGCCAAGAAAGGCCATTTCAA...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CAA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTAACTGTTCTTCCGATTaGCCAACCCAAGCAACCTCG | + |
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Preference number: 5 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSNCSSD*PTQATS Trigger: CGAGGTTGCTTGGGTTGGCAAATCGGAAGAACAGTT...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 90 bp | TATAGTATCTTCATCGATCGTGATTCCAGGAAAAGGAGTAACTTCTaGGCCCGTAGCTACAAGGATGTTTTTGGTATCAATAACCTGAGT | + |
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Preference number: 5 (lower is better) Translates to: YSIFIDRDSRKRSNF*ARSYKDVFGINNLS Trigger: ACTCAGGTTATTGATACCAAAAACATCCTTGTAGCTACGGGCTCAGAAGTTACTCCTTTTCCTGGAATCACGATCGATGAAGATACTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 90 bp | TTTACCACCAGAAGCAGCTTCGACAGACACATCAATTTTTCCATCTaGCTTCTTGGTGGCACCAGTAACTTTTGTATTCAGTTTAAACTT | + |
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Preference number: 5 (lower is better) Translates to: FTTRSSFDRHINFSI*LLGGTSNFCIQFKL Trigger: AAGTTTAAACTGAATACAAAAGTTACTGGTGCCACCAAGAAGTCAGATGGAAAAATTGATGTGTCTGTCGAAGCTGCTTCTGGTGGTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CAA 90 bp | CTCCTTCCTGTCAACAGATTCACCTCCACTAAATTAGAGGTAAAATCTATTAGTTTTCCATCTGACTTCTaGGTGGCACCAGTAACTTTT | + |
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Preference number: 5 (lower is better) Translates to: LLPVNRFTSTKLEVKSISFPSDF*VAPVTF Trigger: AAAAGTTACTGGTGCCACCAAGAAGTCAGATGGAAA...ACTAATAGATTTTACCTCTAATTTAGTGGAGGTGAATCTGTTGACAGGAAGGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CAA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTTTTTGTAGCTGTAACTaGATTCTTGCCGGTTATCTT | + |
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Preference number: 5 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSFCSCN*ILAGYL Trigger: AAGATAACCGGCAAGAATCAAGTTACAGCTACAAAA...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS-3UTR CAA 90 bp | CTTCACTTAGGTAACATGTATTTCTACCTCTTAAACTGCCAGCAATTTGGAAGTGGGAATTTTCCAATTTaGAACTCAATACCCTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: LHLGNMYFYLLNCQQFGSGNFPI*NSIPSS Trigger: AGAAGAGGGTATTGAGTTCAAAATTGGAAAATTCCC...ACTTCCAAATTGCTGGCAGTTTAAGAGGTAGAAATACATGTTACCTAAGTGAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 72 bp | TGTGCACAGCACCGCCGGCCATCCCTTCAACACAGATaGTGCCTTCATCTTCTGCTTTGTGAGCCAACATTG | + |
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Preference number: 6 (lower is better) Translates to: CAQHRRPSLQHR*CLHLLLCEPTL Trigger: CAATGTTGGCTCACAAAGCAGAAGATGAAGGCATCATCTGTGTTGAAGGGATGGCCGGCGGTGCTGTGCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS GCA 72 bp | GGCCATCCCTTCAACACAGATGATGCCTTCATCTTCTaGTTTGTGAGCCAACATTGGACCAGCGACCACATC | + |
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Preference number: 6 (lower is better) Translates to: GHPFNTDDAFIF*FVSQHWTSDHI Trigger: GATGTGGTCGCTGGTCCAATGTTGGCTCACAAAGCAGAAGATGAAGGCATCATCTGTGTTGAAGGGATGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 72 bp | CTGAAGAAACTCCTTGTAGGCCATGAGATATCCGATTaGAATGGCCTTTCTTGGCCAAGGAGCGGTACACAC | + |
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Preference number: 6 (lower is better) Translates to: LKKLLVGHEISD*NGLSWPRSGTH Trigger: GTGTGTACCGCTCCTTGGCCAAGAAAGGCCATTTCAATCGGATATCTCATGGCCTACAAGGAGTTTCTTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 72 bp | GCCAACCCAAGCAACCTCGGGGTGTGTGTAAATCACTaGTGGCACACAATTATAATCAATGTGCACAGCACC | + |
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Preference number: 6 (lower is better) Translates to: ANPSNLGVCVNH*WHTIIINVHST Trigger: GGTGCTGTGCACATTGATTATAATTGTGTGCCATCAGTGATTTACACACACCCCGAGGTTGCTTGGGTTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS CAA 90 bp | CTCCAGCACCTGGTCCTAGAATATGTGCTCCCAGCACTCTATCTGTaGACTTATGTCCAAGAATCTTCACCATGCCATCTGTGTCAGCAT | + |
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Preference number: 6 (lower is better) Translates to: LQHLVLEYVLPALYL*TYVQESSPCHLCQH Trigger: ATGCTGACACAGATGGCATGGTGAAGATTCTTGGACATAAGTCAACAGATAGAGTGCTGGGAGCACATATTCTAGGACCAGGTGCTGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 72 bp | CCTTCAACACAGATGATGCCTTCATCTTCTGCTTTGTaGGCCAACATTGGACCAGCGACCACATCTCCAATA | + |
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Preference number: 6 (lower is better) Translates to: PSTQMMPSSSAL*ANIGPATTSPI Trigger: TATTGGAGATGTGGTCGCTGGTCCAATGTTGGCTCACAAAGCAGAAGATGAAGGCATCATCTGTGTTGAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 72 bp | TCTAGTTCAATTCCAAGCTCTTCTAGTCCCAAATTCTaGGTAAAGGGCCGCCGACCAATGCAAACCAAGAGT | + |
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Preference number: 6 (lower is better) Translates to: SSSIPSSSSPKF*VKGRRPMQTKS Trigger: ACTCTTGGTTTGCATTGGTCGGCGGCCCTTTACTCAGAATTTGGGACTAGAAGAGCTTGGAATTGAACTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS GCA 72 bp | ACTCAATACCCTCTTCTTTCAACTGTTCTTCCGATTTaGCAACCCAAGCAACCTCGGGGTGTGTGTAAATCA | + |
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Preference number: 6 (lower is better) Translates to: TQYPLLSTVLPI*QPKQPRGVCKS Trigger: TGATTTACACACACCCCGAGGTTGCTTGGGTTGGCAAATCGGAAGAACAGTTGAAAGAAGAGGGTATTGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS CAA 72 bp | CAGGGCCAGAACCTATCACTGTCACGTCAGCCTCAATaGGTTGATCTGCATAAGTTCTTAAAGGAACTGAAG | + |
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Preference number: 6 (lower is better) Translates to: QGQNLSLSRQPQ*VDLHKFLKELK Trigger: CTTCAGTTCCTTTAAGAACTTATGCAGATCAACCAATTGAGGCTGACGTGACAGTGATAGGTTCTGGCCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS CAA 72 bp | CTGGTCCTAGAATATGTGCTCCCAGCACTCTATCTGTaGACTTATGTCCAAGAATCTTCACCATGCCATCTG | + |
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Preference number: 6 (lower is better) Translates to: LVLEYVLPALYL*TYVQESSPCHL Trigger: CAGATGGCATGGTGAAGATTCTTGGACATAAGTCAACAGATAGAGTGCTGGGAGCACATATTCTAGGACCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS CAA 90 bp | CATATCCTCCAGGGCCAGAACCTATCACTGTCACGTCAGCCTCAATaGGTTGATCTGCATAAGTTCTTAAAGGAACTGAAGAAACTCCTT | + |
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Preference number: 6 (lower is better) Translates to: HILQGQNLSLSRQPQ*VDLHKFLKELKKLL Trigger: AAGGAGTTTCTTCAGTTCCTTTAAGAACTTATGCAGATCAACCAATTGAGGCTGACGTGACAGTGATAGGTTCTGGCCCTGGAGGATATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS CAA 72 bp | AACCTGAGTGCTGCCATCGGCTTTTGTAGCTGTAACTaGATTCTTGCCGGTTATCTTTCCAAATCCATTGAC | + |
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Preference number: 6 (lower is better) Translates to: NLSAAIGFCSCN*ILAGYLSKSID Trigger: GTCAATGGATTTGGAAAGATAACCGGCAAGAATCAAGTTACAGCTACAAAAGCCGATGGCAGCACTCAGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS CAA 90 bp | GGTATCAATAACCTGAGTGCTGCCATCGGCTTTTGTAGCTGTAACTaGATTCTTGCCGGTTATCTTTCCAAATCCATTGACGTGAACAAC | + |
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Preference number: 6 (lower is better) Translates to: GINNLSAAIGFCSCN*ILAGYLSKSIDVNN Trigger: GTTGTTCACGTCAATGGATTTGGAAAGATAACCGGCAAGAATCAAGTTACAGCTACAAAAGCCGATGGCAGCACTCAGGTTATTGATACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS GCA 72 bp | AAAAATTCAACTGCTGTCACATCTGCACCAAGTCTTTaGCAAACTGAACCCAGTTCCACACCAATTACTCCT | + |
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Preference number: 6 (lower is better) Translates to: KNSTAVTSAPSL*QTEPSSTPITP Trigger: AGGAGTAATTGGTGTGGAACTGGGTTCAGTTTGGCAAAGACTTGGTGCAGATGTGACAGCAGTTGAATTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 72 bp | TTCATCGATCGTGATTCCAGGAAAAGGAGTAACTTCTaGGCCCGTAGCTACAAGGATGTTTTTGGTATCAAT | + |
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Preference number: 6 (lower is better) Translates to: FIDRDSRKRSNF*ARSYKDVFGIN Trigger: ATTGATACCAAAAACATCCTTGTAGCTACGGGCTCAGAAGTTACTCCTTTTCCTGGAATCACGATCGATGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS TCA 72 bp | AGAAGCAGCTTCGACAGACACATCAATTTTTCCATCTaGCTTCTTGGTGGCACCAGTAACTTTTGTATTCAG | + |
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Preference number: 6 (lower is better) Translates to: RSSFDRHINFSI*LLGGTSNFCIQ Trigger: CTGAATACAAAAGTTACTGGTGCCACCAAGAAGTCAGATGGAAAAATTGATGTGTCTGTCGAAGCTGCTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS CAA 90 bp | CCAGAAGCAGCTTCGACAGACACATCAATTTTTCCATCTGACTTCTaGGTGGCACCAGTAACTTTTGTATTCAGTTTAAACTTAAATCCT | + |
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Preference number: 6 (lower is better) Translates to: PEAASTDTSIFPSDF*VAPVTFVFSLNLNP Trigger: AGGATTTAAGTTTAAACTGAATACAAAAGTTACTGGTGCCACCAAGAAGTCAGATGGAAAAATTGATGTGTCTGTCGAAGCTGCTTCTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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| CDS CAA 72 bp | GCTTCGACAGACACATCAATTTTTCCATCTGACTTCTaGGTGGCACCAGTAACTTTTGTATTCAGTTTAAAC | + |
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Preference number: 6 (lower is better) Translates to: ASTDTSIFPSDF*VAPVTFVFSLN Trigger: GTTTAAACTGAATACAAAAGTTACTGGTGCCACCAAGAAGTCAGATGGAAAAATTGATGTGTCTGTCGAAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110857.5 |
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