Pregenerated sensors for DKK4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031535Ensembl transcript IDs: ENSMUST00000033936.8
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AAGACGCACTTGAGGTCAGGGGATCATGCGTTTGAGGCCATGAGTTaGCTGGCCTACATAGCTTACTTTGAGACCCTGTCTCAGAAAGCT | + |
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Preference number: 2 (lower is better) Translates to: KTHLRSGDHAFEAMS*LAYIAYFETLSQKA Trigger: AGCTTTCTGAGACAGGGTCTCAAAGTAAGCTATGTAGGCCAGCAAACTCATGGCCTCAAACGCATGATCCCCTGACCTCAAGTGCGTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| 3UTR-3UTR TCA 90 bp | AGCATCTCAGTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTAATCCCAAGACGCACTTaGGGTCAGGGGATCATGCGT | + |
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Preference number: 2 (lower is better) Translates to: SISVSACCLSQLLGDWALIPRRT*GQGIMR Trigger: ACGCATGATCCCCTGACCTCAAGTGCGTCTTGGGAT...TAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATACTGAGATGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| 3UTR-3UTR TCA 90 bp | AGCATCTCAGTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTACTACATAGCTTACTTTaGGACCCTGTCTCAGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: SISVSACCLSQLLGDWALLHSLL*DPVSES Trigger: GCTTTCTGAGACAGGGTCTCAAAGTAAGCTATGTAG...TAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATACTGAGATGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| 3UTR-3UTR TCA 90 bp | GTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTATTTATGTGCATTAGTGCCAGGGATTaGTTCTGTGTGAACACAACA | + |
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Preference number: 2 (lower is better) Translates to: VSACCLSQLLGDWALFMCISARD*FCVNTT Trigger: TGTTGTGTTCACACAGAATCAATCCCTGGCACTAAT...GCACATAAATAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR CCA 90 bp | GGCTCATCAGAGTATAGCATCTCAGTATCTGCTTGCTGTCTGTCTCAGTTGCTACACACAGACCGTTCCTaGGCAGCACACGGCGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GSSEYSISVSACCLSQLLHTDRS*AAHGAP Trigger: AGGAGCGCCGTGTGCTGCCCAGGAACGGTCTGTGTG...TAGCAACTGAGACAGACAGCAAGCAGATACTGAGATGCTATACTCTGATGAGCC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR TCA 90 bp | AGCATCTCAGTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTACACACGGCGCTCCTCTaGCACCTCCTGCGAACTCTA | + |
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Preference number: 4 (lower is better) Translates to: SISVSACCLSQLLGDWALHTALL*HLLRTL Trigger: TAGAGTTCGCAGGAGGTGTCAGAGGAGCGCCGTGTG...TAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATACTGAGATGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR GCA 90 bp | CTGGCCTACATAGCTTACTTTGAGACCCTGTCTCAGAAAGCTCCTCCCCCGCCCCCTCCTGTCCCTTACTaGTTTGTGATTTCTTCGTAC | + |
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Preference number: 4 (lower is better) Translates to: LAYIAYFETLSQKAPPPPPPVPY*FVISSY Trigger: GTACGAAGAAATCACAAAGCAGTAAGGGACAGGAGG...GGGCGGGGGAGGAGCTTTCTGAGACAGGGTCTCAAAGTAAGCTATGTAGGCCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| 3UTR CAA 72 bp | TTGAGGTCAGGGGATCATGCGTTTGAGGCCATGAGTTaGCTGGCCTACATAGCTTACTTTGAGACCCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: LRSGDHAFEAMS*LAYIAYFETLS Trigger: AGACAGGGTCTCAAAGTAAGCTATGTAGGCCAGCAAACTCATGGCCTCAAACGCATGATCCCCTGACCTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR TCA 90 bp | GTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTATTTATGTGCGTACTGGGCTTCCCCTaGGGTCTGTTTTCCTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: VSACCLSQLLGDWALFMCVLGFP*GLFSSA Trigger: AGCAGAGGAAAACAGACCTCAGGGGAAGCCCAGTAC...GCACATAAATAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR GCA 90 bp | CTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTATTTATGTGCTGAGTGTAACATGGGCAGTGTCTTTGTaGCCCCTCCTGGAGCAGACT | + |
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Preference number: 4 (lower is better) Translates to: LSVSVARRLGFIYVLSVTWAVSL*PLLEQT Trigger: AGTCTGCTCCAGGAGGGGGCACAAAGACACTGCCCA...TGTTACACTCAGCACATAAATAAAGCCCAATCTCCTAGCAACTGAGACAGACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR CCA 90 bp | CTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTATTTATGTGCTGAGTGTAACACCGCAGTCGCAACGCTaGAAGATTTCTGGGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LSVSVARRLGFIYVLSVTPQSQR*KISGAW Trigger: CCAAGCCCCAGAAATCTTCCAGCGTTGCGACTGCGG...TGTTACACTCAGCACATAAATAAAGCCCAATCTCCTAGCAACTGAGACAGACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR GCA 90 bp | GCTAGGAGATTGGGCTTTATTTATGTGCTGAGTGTAACATGCTCGCCTGTAATCTTTAGTGGTTCCTTCTaGATAGGCGCCGTCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: ARRLGFIYVLSVTCSPVIFSGSF*IGAVLA Trigger: GGCCAAGACGGCGCCTATGCAGAAGGAACCACTAAA...GATTACAGGCGAGCATGTTACACTCAGCACATAAATAAAGCCCAATCTCCTAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR CCA 90 bp | AGCATCTCAGTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTAACGCTGGAAGATTTCTaGGGCTTGGGCAGTGTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SISVSACCLSQLLGDWALTLEDF*GLGSVF Trigger: AAAGACACTGCCCAAGCCCCAGAAATCTTCCAGCGT...TAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATACTGAGATGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR TCA 90 bp | GTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTATTTATGTGCGTGAACAAAACCAGCTaGGTCCAAGCAAGGTCACCA | + |
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Preference number: 4 (lower is better) Translates to: VSACCLSQLLGDWALFMCVNKTS*VQARSP Trigger: TGGTGACCTTGCTTGGACTCAGCTGGTTTTGTTCAC...GCACATAAATAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR GCA 90 bp | GTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTATTTATGTGCAGGTCTGTTTTCCTCTaGTGGCCATTTAGTGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: VSACCLSQLLGDWALFMCRSVFL*WPFSGS Trigger: GGAACCACTAAATGGCCAGCAGAGGAAAACAGACCT...GCACATAAATAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR CCA 90 bp | CTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTATTTATGTGCTGAGTGTAACAGTTTCTGTCCATCACTaGCCTTGTGTCTTCCACTGC | + |
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Preference number: 4 (lower is better) Translates to: LSVSVARRLGFIYVLSVTVSVHH*PCVFHC Trigger: GCAGTGGAAGACACAAGGCCAGTGATGGACAGAAAC...TGTTACACTCAGCACATAAATAAAGCCCAATCTCCTAGCAACTGAGACAGACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR GCA 90 bp | AGCATCTCAGTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTATGTCTTCCACTGCAGTaGAAACATCATTCACACAGA | + |
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Preference number: 4 (lower is better) Translates to: SISVSACCLSQLLGDWALCLPLQ*KHHSHR Trigger: TCTGTGTGAATGATGTTTGCACTGCAGTGGAAGACA...TAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATACTGAGATGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| 3UTR CAA 72 bp | AGTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATaGGGCTTTATTTATGTGCTGAGTGTAACATGCTCG | + |
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Preference number: 4 (lower is better) Translates to: SICLLSVSVARR*GFIYVLSVTCS Trigger: CGAGCATGTTACACTCAGCACATAAATAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR GCA 90 bp | CTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTATTTATGTGCTGAGTGTAACACCTTGTGTCTTCCACTaGAGTGCAAACATCATTCAC | + |
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Preference number: 4 (lower is better) Translates to: LSVSVARRLGFIYVLSVTPCVFH*SANIIH Trigger: GTGAATGATGTTTGCACTGCAGTGGAAGACACAAGG...TGTTACACTCAGCACATAAATAAAGCCCAATCTCCTAGCAACTGAGACAGACAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR GCA 90 bp | GGCTCATCAGAGTATAGCATCTCAGTATCTGCTTGCTGTCTGTCTCAGTTGCTACTCGTAGAACTGGCTTaGAAATTTTTGTCCAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: GSSEYSISVSACCLSQLLLVELA*KFLSKN Trigger: ATTTTTGGACAAAAATTTGCAAGCCAGTTCTACGAG...TAGCAACTGAGACAGACAGCAAGCAGATACTGAGATGCTATACTCTGATGAGCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS TCA 90 bp | ACATCATTCACACAGACCGTTCCTGGGCAGCACACGGCGCTCCTCTaGCACCTCCTGCGAACTCTACGGCACGTGGCACAGAAGGACCGT | + |
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Preference number: 5 (lower is better) Translates to: TSFTQTVPGQHTALL*HLLRTLRHVAQKDR Trigger: ACGGTCCTTCTGTGCCACGTGCCGTAGAGTTCGCAGGAGGTGTCAGAGGAGCGCCGTGTGCTGCCCAGGAACGGTCTGTGTGAATGATGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CCA 90 bp | GTTAGTCCAGGCCCGCAGTCGCAACGCTGGAAGATTTCTGGGGCTTaGGCAGTGTCTTTGTGCCCCCTCCTGGAGCAGACTTGTCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: VSPGPQSQRWKISGA*AVSLCPLLEQTCPS Trigger: AGAGGGACAAGTCTGCTCCAGGAGGGGGCACAAAGACACTGCCCAAGCCCCAGAAATCTTCCAGCGTTGCGACTGCGGGCCTGGACTAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS GCA 90 bp | CAGTCGCAACGCTGGAAGATTTCTGGGGCTTGGGCAGTGTCTTTGTaGCCCCTCCTGGAGCAGACTTGTCCCTCTCGTAGAACTGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: QSQRWKISGAWAVSL*PLLEQTCPSRRTGL Trigger: CAAGCCAGTTCTACGAGAGGGACAAGTCTGCTCCAGGAGGGGGCACAAAGACACTGCCCAAGCCCCAGAAATCTTCCAGCGTTGCGACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS TCA 90 bp | CTTTGGCATACTCTTAGCCTTGAATGTTGTCTGTTACTGGTCACCTaGCTTCGGCACGTTAGTCCAGGCCCGCAGTCGCAACGCTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: LWHTLSLECCLLLVT*LRHVSPGPQSQRWK Trigger: CTTCCAGCGTTGCGACTGCGGGCCTGGACTAACGTGCCGAAGTCAGGTGACCAGTAACAGACAACATTCAAGGCTAAGAGTATGCCAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS GCA 90 bp | TTGGCCGTCAGTGTTTCTGTCCATCACTGGCCTTGTGTCTTCCACTaGAGTGCAAACATCATTCACACAGACCGTTCCTGGGCAGCACAC | + |
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Preference number: 5 (lower is better) Translates to: LAVSVSVHHWPCVFH*SANIIHTDRSWAAH Trigger: GTGTGCTGCCCAGGAACGGTCTGTGTGAATGATGTTTGCACTGCAGTGGAAGACACAAGGCCAGTGATGGACAGAAACACTGACGGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CCA 90 bp | TTCTGCATAGGCGCCGTCTTGGCCGTCAGTGTTTCTGTCCATCACTaGCCTTGTGTCTTCCACTGCAGTGCAAACATCATTCACACAGAC | + |
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Preference number: 5 (lower is better) Translates to: FCIGAVLAVSVSVHH*PCVFHCSANIIHTD Trigger: GTCTGTGTGAATGATGTTTGCACTGCAGTGGAAGACACAAGGCCAGTGATGGACAGAAACACTGACGGCCAAGACGGCGCCTATGCAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS TCA 90 bp | TCCTGTCCCTTACTGCTTTGTGATTTCTTCGTACTGGGCTTCCCCTaGGGTCTGTTTTCCTCTGCTGGCCATTTAGTGGTTCCTTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: SCPLLLCDFFVLGFP*GLFSSAGHLVVPSA Trigger: TGCAGAAGGAACCACTAAATGGCCAGCAGAGGAAAACAGACCTCAGGGGAAGCCCAGTACGAAGAAATCACAAAGCAGTAAGGGACAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR CAA 90 bp | GTATCTGCTTGCTGTCTGTCTCAGTTGCTAGGAGATTGGGCTTTATTTATGTGCTGTCCATCACTGGCCTaGTGTCTTCCACTGCAGTGC | + |
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Preference number: 5 (lower is better) Translates to: VSACCLSQLLGDWALFMCCPSLA*CLPLQC Trigger: GCACTGCAGTGGAAGACACAAGGCCAGTGATGGACA...GCACATAAATAAAGCCCAATCTCCTAGCAACTGAGACAGACAGCAAGCAGATAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR CAA 90 bp | GCTAGGAGATTGGGCTTTATTTATGTGCTGAGTGTAACATGCTCGCCTGTAATCGAAGATTTCTGGGGCTaGGGCAGTGTCTTTGTGCCC | + |
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Preference number: 5 (lower is better) Translates to: ARRLGFIYVLSVTCSPVIEDFWG*GSVFVP Trigger: GGGCACAAAGACACTGCCCAAGCCCCAGAAATCTTC...GATTACAGGCGAGCATGTTACACTCAGCACATAAATAAAGCCCAATCTCCTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS-3UTR CAA 90 bp | GCTAGGAGATTGGGCTTTATTTATGTGCTGAGTGTAACATGCTCGCCTGTAATCACATCCGCGGAGCTCTaGATGTTGTTAAAGTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: ARRLGFIYVLSVTCSPVITSAEL*MLLKSR Trigger: TCTGGACTTTAACAACATCAAGAGCTCCGCGGATGT...GATTACAGGCGAGCATGTTACACTCAGCACATAAATAAAGCCCAATCTCCTAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CAA 72 bp | AGGCCCGCAGTCGCAACGCTGGAAGATTTCTGGGGCTaGGGCAGTGTCTTTGTGCCCCCTCCTGGAGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: RPAVATLEDFWG*GSVFVPPPGAD Trigger: GTCTGCTCCAGGAGGGGGCACAAAGACACTGCCCAAGCCCCAGAAATCTTCCAGCGTTGCGACTGCGGGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CAA 90 bp | CCGCAGTCGCAACGCTGGAAGATTTCTGGGGCTTGGGCAGTGTCTTaGTGCCCCCTCCTGGAGCAGACTTGTCCCTCTCGTAGAACTGGC | + |
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Preference number: 6 (lower is better) Translates to: PQSQRWKISGAWAVS*CPLLEQTCPSRRTG Trigger: GCCAGTTCTACGAGAGGGACAAGTCTGCTCCAGGAGGGGGCACAAAGACACTGCCCAAGCCCCAGAAATCTTCCAGCGTTGCGACTGCGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CCA 72 bp | CACTGCAGTGCAAACATCATTCACACAGACCGTTCCTaGGCAGCACACGGCGCTCCTCTGACACCTCCTGCG | + |
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Preference number: 6 (lower is better) Translates to: HCSANIIHTDRS*AAHGAPLTPPA Trigger: CGCAGGAGGTGTCAGAGGAGCGCCGTGTGCTGCCCAGGAACGGTCTGTGTGAATGATGTTTGCACTGCAGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CCA 72 bp | CTTCGGCACGTTAGTCCAGGCCCGCAGTCGCAACGCTaGAAGATTTCTGGGGCTTGGGCAGTGTCTTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: LRHVSPGPQSQR*KISGAWAVSLC Trigger: GCACAAAGACACTGCCCAAGCCCCAGAAATCTTCCAGCGTTGCGACTGCGGGCCTGGACTAACGTGCCGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS GCA 72 bp | CTGTCTGATGCACACAGCGAGCCCTTCCCCGCGCCTTaGACATCCGCGGAGCTCTTGATGTTGTTAAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: LSDAHSEPFPAP*TSAELLMLLKS Trigger: GGACTTTAACAACATCAAGAGCTCCGCGGATGTGCAAGGCGCGGGGAAGGGCTCGCTGTGTGCATCAGACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS GCA 72 bp | CGCTGGAAGATTTCTGGGGCTTGGGCAGTGTCTTTGTaGCCCCTCCTGGAGCAGACTTGTCCCTCTCGTAGA | + |
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Preference number: 6 (lower is better) Translates to: RWKISGAWAVSL*PLLEQTCPSRR Trigger: TCTACGAGAGGGACAAGTCTGCTCCAGGAGGGGGCACAAAGACACTGCCCAAGCCCCAGAAATCTTCCAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CAA 72 bp | TTCCCCGCGCCTTGCACATCCGCGGAGCTCTTGATGTaGTTAAAGTCCAGAACCAGGGCTGCCAGGGGTGAA | + |
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Preference number: 6 (lower is better) Translates to: FPAPCTSAELLM*LKSRTRAARGE Trigger: TTCACCCCTGGCAGCCCTGGTTCTGGACTTTAACAACATCAAGAGCTCCGCGGATGTGCAAGGCGCGGGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CAA 72 bp | CAACGCTGGAAGATTTCTGGGGCTTGGGCAGTGTCTTaGTGCCCCCTCCTGGAGCAGACTTGTCCCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: QRWKISGAWAVS*CPLLEQTCPSR Trigger: ACGAGAGGGACAAGTCTGCTCCAGGAGGGGGCACAAAGACACTGCCCAAGCCCCAGAAATCTTCCAGCGTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CCA 72 bp | CGTACTGGGCTTCCCCTGAGGTCTGTTTTCCTCTGCTaGCCATTTAGTGGTTCCTTCTGCATAGGCGCCGTC | + |
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Preference number: 6 (lower is better) Translates to: RTGLPLRSVFLC*PFSGSFCIGAV Trigger: GACGGCGCCTATGCAGAAGGAACCACTAAATGGCCAGCAGAGGAAAACAGACCTCAGGGGAAGCCCAGTACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS GCA 72 bp | CTTCGTACTGGGCTTCCCCTGAGGTCTGTTTTCCTCTaGTGGCCATTTAGTGGTTCCTTCTGCATAGGCGCC | + |
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Preference number: 6 (lower is better) Translates to: LRTGLPLRSVFL*WPFSGSFCIGA Trigger: GGCGCCTATGCAGAAGGAACCACTAAATGGCCAGCAGAGGAAAACAGACCTCAGGGGAAGCCCAGTACGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CCA 72 bp | GGCGCCGTCTTGGCCGTCAGTGTTTCTGTCCATCACTaGCCTTGTGTCTTCCACTGCAGTGCAAACATCATT | + |
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Preference number: 6 (lower is better) Translates to: GAVLAVSVSVHH*PCVFHCSANII Trigger: AATGATGTTTGCACTGCAGTGGAAGACACAAGGCCAGTGATGGACAGAAACACTGACGGCCAAGACGGCGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CAA 72 bp | TGGCCATTTAGTGGTTCCTTCTGCATAGGCGCCGTCTaGGCCGTCAGTGTTTCTGTCCATCACTGGCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: WPFSGSFCIGAV*AVSVSVHHWPC Trigger: ACAAGGCCAGTGATGGACAGAAACACTGACGGCCAAGACGGCGCCTATGCAGAAGGAACCACTAAATGGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS GCA 72 bp | TCTGTTTTCCTCTGCTGGCCATTTAGTGGTTCCTTCTaGATAGGCGCCGTCTTGGCCGTCAGTGTTTCTGTC | + |
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Preference number: 6 (lower is better) Translates to: SVFLCWPFSGSF*IGAVLAVSVSV Trigger: GACAGAAACACTGACGGCCAAGACGGCGCCTATGCAGAAGGAACCACTAAATGGCCAGCAGAGGAAAACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CCA 72 bp | TTTGGCATACTCTTAGCCTTGAATGTTGTCTGTTACTaGTCACCTGACTTCGGCACGTTAGTCCAGGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: FGILLALNVVCY*SPDFGTLVQAR Trigger: GCGGGCCTGGACTAACGTGCCGAAGTCAGGTGACCAGTAACAGACAACATTCAAGGCTAAGAGTATGCCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS CAA 72 bp | CGTCTTGGCCGTCAGTGTTTCTGTCCATCACTGGCCTaGTGTCTTCCACTGCAGTGCAAACATCATTCACAC | + |
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Preference number: 6 (lower is better) Translates to: RLGRQCFCPSLA*CLPLQCKHHSH Trigger: GTGTGAATGATGTTTGCACTGCAGTGGAAGACACAAGGCCAGTGATGGACAGAAACACTGACGGCCAAGACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS GCA 72 bp | AGTGTTTCTGTCCATCACTGGCCTTGTGTCTTCCACTaGAGTGCAAACATCATTCACACAGACCGTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SVSVHHWPCVFH*SANIIHTDRSW Trigger: CCAGGAACGGTCTGTGTGAATGATGTTTGCACTGCAGTGGAAGACACAAGGCCAGTGATGGACAGAAACACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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| CDS TCA 72 bp | TTACTGCTTTGTGATTTCTTCGTACTGGGCTTCCCCTaGGGTCTGTTTTCCTCTGCTGGCCATTTAGTGGTT | + |
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Preference number: 6 (lower is better) Translates to: LLLCDFFVLGFP*GLFSSAGHLVV Trigger: AACCACTAAATGGCCAGCAGAGGAAAACAGACCTCAGGGGAAGCCCAGTACGAAGAAATCACAAAGCAGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033936.8 |
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