Pregenerated sensors for DKK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024868Ensembl transcript IDs: ENSMUST00000025803.9
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCTTAAGTTGGCAGGCTTCCTTCTGCATAATCTCTTCTGAATTCTaGCCATCATCTGGAATCACTTGCTTGGGCATTCCCTCCCTTCCA | + |
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Preference number: 1 (lower is better) Translates to: GLSWQASFCIISSEF*PSSGITCLGIPSLP Trigger: TGGAAGGGAGGGAATGCCCAAGCAAGTGATTCCAGATGATGGGCAGAATTCAGAAGAGATTATGCAGAAGGAAGCCTGCCAACTTAAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR TCA 90 bp | ATTATTTGGCTTAAGTTGGCAGGCTTCCTTCTGCATAATCTCTTCTaGATTCTGCCCATCATCTGGAATCACTTGCTTGGGCATTCCCTC | + |
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Preference number: 1 (lower is better) Translates to: IIWLKLAGFLLHNLF*ILPIIWNHLLGHSL Trigger: GAGGGAATGCCCAAGCAAGTGATTCCAGATGATGGGCAGAATTCAGAAGAGATTATGCAGAAGGAAGCCTGCCAACTTAAGCCAAATAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR GCA 90 bp | TTCTGCATAATCTCTTCTGAATTCTGCCCATCATCTGGAATCACTTaGTTGGGCATTCCCTCCCTTCCAATAACTGTTGGTCACTTAGGT | + |
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Preference number: 1 (lower is better) Translates to: FCIISSEFCPSSGIT*LGIPSLPITVGHLG Trigger: ACCTAAGTGACCAACAGTTATTGGAAGGGAGGGAATGCCCAAGCAAGTGATTCCAGATGATGGGCAGAATTCAGAAGAGATTATGCAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR GCA 90 bp | TTACAGGTAAGTGCCACACTGAGGATTTACAACACAGTAATTTACTaGAATCACAGGGGAGTTCCATCAAGAAACAAAGTCCTTACACTC | + |
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Preference number: 1 (lower is better) Translates to: LQVSATLRIYNTVIY*NHRGVPSRNKVLTL Trigger: GAGTGTAAGGACTTTGTTTCTTGATGGAACTCCCCTGTGATTGCAGTAAATTACTGTGTTGTAAATCCTCAGTGTGGCACTTACCTGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR-3UTR CCA 90 bp | TTTGGCTTAAGTTGGCAGGCTTCCTTCTGCATAATCTCTTCTGAATTCTGCCCAATGGACCTGAGTTCATaGGCATCCCTCTGCCTCAGC | + |
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Preference number: 2 (lower is better) Translates to: FGLSWQASFCIISSEFCPMDLSS*ASLCLS Trigger: GCTGAGGCAGAGGGATGCCCATGAACTCAGGTCCAT...TGGGCAGAATTCAGAAGAGATTATGCAGAAGGAAGCCTGCCAACTTAAGCCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR-3UTR GCA 90 bp | TTGGCCAGAATGGACCTGAGTTCATGGGCATCCCTCTGCCTCAGCCTCCAAAATAACACAGTAATTTACTaGAATCACAGGGGAGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: LARMDLSSWASLCLSLQNNTVIY*NHRGVP Trigger: TGGAACTCCCCTGTGATTGCAGTAAATTACTGTGTT...ATTTTGGAGGCTGAGGCAGAGGGATGCCCATGAACTCAGGTCCATTCTGGCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR-3UTR GCA 90 bp | TTTGGCTTAAGTTGGCAGGCTTCCTTCTGCATAATCTCTTCTGAATTCTGCCCATCATGGGCATCCCTCTaGCTCAGCCTCCAAAATCCT | + |
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Preference number: 2 (lower is better) Translates to: FGLSWQASFCIISSEFCPSWASL*LSLQNP Trigger: AGGATTTTGGAGGCTGAGGCAGAGGGATGCCCATGA...TGGGCAGAATTCAGAAGAGATTATGCAGAAGGAAGCCTGCCAACTTAAGCCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR-3UTR CCA 90 bp | CATTGTTCTATAGAAAGAGTTGGCCAGAATGGACCTGAGTTCATGGGCATCCCTACACTCCAGAGCTTTTaGAAGGTATTGTCGGAATGC | + |
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Preference number: 2 (lower is better) Translates to: HCSIERVGQNGPEFMGIPTLQSF*KVLSEC Trigger: GCATTCCGACAATACCTTCCAAAAGCTCTGGAGTGT...AGGGATGCCCATGAACTCAGGTCCATTCTGGCCAACTCTTTCTATAGAACAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR CAA 90 bp | TGCATAATCTCTTCTGAATTCTGCCCATCATCTGGAATCACTTGCTaGGGCATTCCCTCCCTTCCAATAACTGTTGGTCACTTAGGTGAA | + |
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Preference number: 2 (lower is better) Translates to: CIISSEFCPSSGITC*GIPSLPITVGHLGE Trigger: TTCACCTAAGTGACCAACAGTTATTGGAAGGGAGGGAATGCCCAAGCAAGTGATTCCAGATGATGGGCAGAATTCAGAAGAGATTATGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR-3UTR CCA 90 bp | TTTGGCTTAAGTTGGCAGGCTTCCTTCTGCATAATCTCTTCTGAATTCTGCCCACAGCCTCCAAAATCCTaGGATTATAGGCAAAAGCAC | + |
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Preference number: 2 (lower is better) Translates to: FGLSWQASFCIISSEFCPQPPKS*DYRQKH Trigger: GTGCTTTTGCCTATAATCCCAGGATTTTGGAGGCTG...TGGGCAGAATTCAGAAGAGATTATGCAGAAGGAAGCCTGCCAACTTAAGCCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR-3UTR GCA 90 bp | CATTGTTCTATAGAAAGAGTTGGCCAGAATGGACCTGAGTTCATGGGCATCCCTGCATTTACAGGTAAGTaGCACACTGAGGATTTACAA | + |
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Preference number: 2 (lower is better) Translates to: HCSIERVGQNGPEFMGIPAFTGK*HTEDLQ Trigger: TTGTAAATCCTCAGTGTGGCACTTACCTGTAAATGC...AGGGATGCCCATGAACTCAGGTCCATTCTGGCCAACTCTTTCTATAGAACAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR CAA 90 bp | CAGGGGAGTTCCATCAAGAAACAAAGTCCTTACACTCCAGAGCTTTaGGAAGGTATTGTCGGAATGCTTAATTACACACTGAAGATTCCT | + |
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Preference number: 2 (lower is better) Translates to: QGSSIKKQSPYTPEL*EGIVGMLNYTLKIP Trigger: AGGAATCTTCAGTGTGTAATTAAGCATTCCGACAATACCTTCCAAAAGCTCTGGAGTGTAAGGACTTTGTTTCTTGATGGAACTCCCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR-3UTR TCA 90 bp | CCAGAGCTTTTGGAAGGTATTGTCGGAATGCTTAATTACACACTGAAGATTCCTTCCTTGGGATTGAGCTaGCAAATCATAAAGGATTTT | + |
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Preference number: 2 (lower is better) Translates to: PELLEGIVGMLNYTLKIPSLGLS*QIIKDF Trigger: AAAATCCTTTATGATTTGTCAGCTCAATCCCAAGGA...AGGAATCTTCAGTGTGTAATTAAGCATTCCGACAATACCTTCCAAAAGCTCTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR TCA 72 bp | ACATTGTTCTATAGAAAGAGTTGGCCAGAATGGACCTaGGTTCATGGGCATCCCTCTGCCTCAGCCTCCAAA | + |
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Preference number: 3 (lower is better) Translates to: TLFYRKSWPEWT*VHGHPSASASK Trigger: TTTGGAGGCTGAGGCAGAGGGATGCCCATGAACTCAGGTCCATTCTGGCCAACTCTTTCTATAGAACAATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR GCA 72 bp | ATCTCTTCTGAATTCTGCCCATCATCTGGAATCACTTaGTTGGGCATTCCCTCCCTTCCAATAACTGTTGGT | + |
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Preference number: 3 (lower is better) Translates to: ISSEFCPSSGIT*LGIPSLPITVG Trigger: ACCAACAGTTATTGGAAGGGAGGGAATGCCCAAGCAAGTGATTCCAGATGATGGGCAGAATTCAGAAGAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR-3UTR CAA 90 bp | AGAGAGAATCTAAGCAGAGAGCACATCTCAGGAAATAAACTGATACTTTCATGTTACACTCCAGAGCTTTaGGAAGGTATTGTCGGAATG | + |
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Preference number: 3 (lower is better) Translates to: RENLSREHISGNKLILSCYTPEL*EGIVGM Trigger: CATTCCGACAATACCTTCCAAAAGCTCTGGAGTGTA...ACATGAAAGTATCAGTTTATTTCCTGAGATGTGCTCTCTGCTTAGATTCTCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR TCA 72 bp | TATTCCATTTCTCCTTACATTCGACCCCCTAGACATTaGAGCAGAAAGGGTTACACATTTAAGAACTGTAAA | + |
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Preference number: 3 (lower is better) Translates to: YSISPYIRPPRH*SRKGYTFKNCK Trigger: TTTACAGTTCTTAAATGTGTAACCCTTTCTGCTTCAATGTCTAGGGGGTCGAATGTAAGGAGAAATGGAATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR GCA 90 bp | TTGGCCAGAATGGACCTGAGTTCATGGGCATCCCTCTGCCTCAGCCTCCAAAATGATCTTTCTGTATCCTaGAAGCCAGGCCTTCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: LARMDLSSWASLCLSLQNDLSVS*KPGLPR Trigger: GCGGGGAAGGCCTGGCTTGCAGGATACAGAAAGATC...ATTTTGGAGGCTGAGGCAGAGGGATGCCCATGAACTCAGGTCCATTCTGGCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CCA 90 bp | ACACTGAGGATTTACAACACAGTAATTTACTGCAATCACAGGGGAGTTCCATCACCCCGCGGCTGGGGCTaGAGCAGTACTCGTCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: TLRIYNTVIYCNHRGVPSPRGWG*SSTRQS Trigger: GCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGG...TGATGGAACTCCCCTGTGATTGCAGTAAATTACTGTGTTGTAAATCCTCAGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR GCA 90 bp | TTTGGCTTAAGTTGGCAGGCTTCCTTCTGCATAATCTCTTCTGAATTCTGCCCAGGGCAGCACATAGCGTaGCTCATGCAGCGCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: FGLSWQASFCIISSEFCPGQHIA*LMQRFL Trigger: CAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCC...TGGGCAGAATTCAGAAGAGATTATGCAGAAGGAAGCCTGCCAACTTAAGCCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR GCA 90 bp | CATTGTTCTATAGAAAGAGTTGGCCAGAATGGACCTGAGTTCATGGGCATCCCTGGACCAGAAGTGTCTTaGACAACACAGCCCTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: HCSIERVGQNGPEFMGIPGPEVS*TTQPCG Trigger: GCCGCAGGGCTGTGTTGTGCAAGACACTTCTGGTCC...AGGGATGCCCATGAACTCAGGTCCATTCTGGCCAACTCTTTCTATAGAACAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CCA 90 bp | CCAGAGCTTTTGGAAGGTATTGTCGGAATGCTTAATTACACACTGAAGATTCCTAGCACCACCCAGCGGTaGGGGCAGGTTCTTGATCGC | + |
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Preference number: 4 (lower is better) Translates to: PELLEGIVGMLNYTLKIPSTTQR*GQVLDR Trigger: GCGATCAAGAACCTGCCCCCACCGCTGGGTGGTGCT...AGGAATCTTCAGTGTGTAATTAAGCATTCCGACAATACCTTCCAAAAGCTCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CCA 90 bp | TTTGGCTTAAGTTGGCAGGCTTCCTTCTGCATAATCTCTTCTGAATTCTGCCCATCAGTGTGGTTCTTCTaGGATATCCATCCCCCGCGG | + |
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Preference number: 4 (lower is better) Translates to: FGLSWQASFCIISSEFCPSVWFF*DIHPPR Trigger: CCGCGGGGGATGGATATCCCAGAAGAACCACACTGA...TGGGCAGAATTCAGAAGAGATTATGCAGAAGGAAGCCTGCCAACTTAAGCCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CCA 90 bp | GCACCAACCACACTTGTTAGAAGTTTTGAAGGTAGTTATACCAAATTCAAGCCCAGTTCAAGGTGGCACTaGCTCCTAGCAGAGGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: APTTLVRSFEGSYTKFKPSSRWH*LLAEGG Trigger: GCCTCCCTCTGCTAGGAGCCAGTGCCACCTTGAACT...GGGCTTGAATTTGGTATAACTACCTTCAAAACTTCTAACAAGTGTGGTTGGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CCA 90 bp | TTTGGCTTAAGTTGGCAGGCTTCCTTCTGCATAATCTCTTCTGAATTCTGCCCAGAACTGAGTTCAAGGTaGCACTGGCTCCTAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: FGLSWQASFCIISSEFCPELSSR*HWLLAE Trigger: CTCTGCTAGGAGCCAGTGCCACCTTGAACTCAGTTC...TGGGCAGAATTCAGAAGAGATTATGCAGAAGGAAGCCTGCCAACTTAAGCCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR GCA 90 bp | ACACTGAGGATTTACAACACAGTAATTTACTGCAATCACAGGGGAGTTCCATCACAAGAACCGGACAGCTaGCGCTGCACACACAACCAT | + |
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Preference number: 4 (lower is better) Translates to: TLRIYNTVIYCNHRGVPSQEPDS*RCTHNH Trigger: ATGGTTGTGTGTGCAGCGGCAGCTGTCCGGTTCTTG...TGATGGAACTCCCCTGTGATTGCAGTAAATTACTGTGTTGTAAATCCTCAGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR CAA 72 bp | TCTTCTGAATTCTGCCCATCATCTGGAATCACTTGCTaGGGCATTCCCTCCCTTCCAATAACTGTTGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: SSEFCPSSGITC*GIPSLPITVGH Trigger: GTGACCAACAGTTATTGGAAGGGAGGGAATGCCCAAGCAAGTGATTCCAGATGATGGGCAGAATTCAGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CCA 90 bp | TTGGCCAGAATGGACCTGAGTTCATGGGCATCCCTCTGCCTCAGCCTCCAAAATAGCCTTCTTGTCCTTTaGTGTGATATATTTTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LARMDLSSWASLCLSLQNSLLVL*CDIFLK Trigger: CTTCAAAAATATATCACACCAAAGGACAAGAAGGCT...ATTTTGGAGGCTGAGGCAGAGGGATGCCCATGAACTCAGGTCCATTCTGGCCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR GCA 90 bp | CCAGAGCTTTTGGAAGGTATTGTCGGAATGCTTAATTACACACTGAAGATTCCTTGCATATTCCATTTTTaGAGTAGTTCCCGGGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PELLEGIVGMLNYTLKIPCIFHF*SSSRGS Trigger: GCTGCCCCGGGAACTACTGCAAAAATGGAATATGCA...AGGAATCTTCAGTGTGTAATTAAGCATTCCGACAATACCTTCCAAAAGCTCTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CCA 90 bp | AGAGAGAATCTAAGCAGAGAGCACATCTCAGGAAATAAACTGATACTTTCATGTTGTCTCTGGCAGGTGTaGAGCCTAGAAGAATTGCTG | + |
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Preference number: 4 (lower is better) Translates to: RENLSREHISGNKLILSCCLWQV*SLEELL Trigger: CAGCAATTCTTCTAGGCTCCACACCTGCCAGAGACA...ACATGAAAGTATCAGTTTATTTCCTGAGATGTGCTCTCTGCTTAGATTCTCTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CCA 90 bp | AGAGAGAATCTAAGCAGAGAGCACATCTCAGGAAATAAACTGATACTTTCATGTCAGGTTTACAGATCTTaGACCAGAAGTGTCTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: RENLSREHISGNKLILSCQVYRS*TRSVLH Trigger: GTGCAAGACACTTCTGGTCCAAGATCTGTAAACCTG...ACATGAAAGTATCAGTTTATTTCCTGAGATGTGCTCTCTGCTTAGATTCTCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR CAA 72 bp | TCCATCAAGAAACAAAGTCCTTACACTCCAGAGCTTTaGGAAGGTATTGTCGGAATGCTTAATTACACACTG | + |
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Preference number: 4 (lower is better) Translates to: SIKKQSPYTPEL*EGIVGMLNYTL Trigger: CAGTGTGTAATTAAGCATTCCGACAATACCTTCCAAAAGCTCTGGAGTGTAAGGACTTTGTTTCTTGATGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| 3UTR CAA 72 bp | TATAGGCAAAAGCACCAACCACACTTGTTAGAAGTTTaGAAGGTAGTTATACCAAATTCAAGCCCATATTAC | + |
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Preference number: 4 (lower is better) Translates to: YRQKHQPHLLEV*KVVIPNSSPYY Trigger: GTAATATGGGCTTGAATTTGGTATAACTACCTTCAAAACTTCTAACAAGTGTGGTTGGTGCTTTTGCCTATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS GCA 90 bp | GCGCTTTCGGCAAGCCAGACAGATCTGTACACCTCCGACGCCGGCTaGCCCGCGGCTGGGGCTGGAGCAGTACTCGTCAGAGCCGCACTC | + |
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Preference number: 5 (lower is better) Translates to: ALSASQTDLYTSDAG*PAAGAGAVLVRAAL Trigger: GAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS TCA 90 bp | ATCTCCAGCCCGTGGGAGCCTTTCCGTTTGTGCTTGGTGCACACCTaGCCTTCTTTAAGGACAGGTTTACAGATCTTGGACCAGAAGTGT | + |
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Preference number: 5 (lower is better) Translates to: ISSPWEPFRLCLVHT*PSLRTGLQILDQKC Trigger: ACACTTCTGGTCCAAGATCTGTAAACCTGTCCTTAAAGAAGGTCAGGTGTGCACCAAGCACAAACGGAAAGGCTCCCACGGGCTGGAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS CCA 90 bp | CGGAGCCTTCTTGTCCTTTGGTGTGATATATTTTTGAAGTCAGTGTaGTTCTTCTGGGATATCCATCCCCCGCGGCGGCGTTGTGGTCAT | + |
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Preference number: 5 (lower is better) Translates to: RSLLVLWCDIFLKSV*FFWDIHPPRRRCGH Trigger: ATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAGGACAAGAAGGCTCCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS CCA 90 bp | CTTGTCCTTTGGTGTGATATATTTTTGAAGTCAGTGTGGTTCTTCTaGGATATCCATCCCCCGCGGCGGCGTTGTGGTCATTACCAAGGT | + |
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Preference number: 5 (lower is better) Translates to: LVLWCDIFLKSVWFF*DIHPPRRRCGHYQG Trigger: ACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAGGACAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CAA 90 bp | ACACTGAGGATTTACAACACAGTAATTTACTGCAATCACAGGGGAGTTCCATCATCCCCCGCGGCGGCGTaGTGGTCATTACCAAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: TLRIYNTVIYCNHRGVPSSPAAA*WSLPRF Trigger: AAACCTTGGTAATGACCACAACGCCGCCGCGGGGGA...TGATGGAACTCCCCTGTGATTGCAGTAAATTACTGTGTTGTAAATCCTCAGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CAA 90 bp | ACACTGAGGATTTACAACACAGTAATTTACTGCAATCACAGGGGAGTTCCATCAGGTGGGGGCAGGTTCTaGATCGCGTTGGAATTGATG | + |
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Preference number: 5 (lower is better) Translates to: TLRIYNTVIYCNHRGVPSGGGRF*IALELM Trigger: CATCAATTCCAACGCGATCAAGAACCTGCCCCCACC...TGATGGAACTCCCCTGTGATTGCAGTAAATTACTGTGTTGTAAATCCTCAGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CAA 90 bp | CATTGTTCTATAGAAAGAGTTGGCCAGAATGGACCTGAGTTCATGGGCATCCCTAGGTTCTTGATCGCGTaGGAATTGATGAGAACTGAG | + |
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Preference number: 5 (lower is better) Translates to: HCSIERVGQNGPEFMGIPRFLIA*ELMRTE Trigger: CTCAGTTCTCATCAATTCCAACGCGATCAAGAACCT...AGGGATGCCCATGAACTCAGGTCCATTCTGGCCAACTCTTTCTATAGAACAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CAA 90 bp | AGAGAGAATCTAAGCAGAGAGCACATCTCAGGAAATAAACTGATACTTTCATGTTGGACCAGAAGTGTCTaGCACAACACAGCCCTGCGG | + |
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Preference number: 5 (lower is better) Translates to: RENLSREHISGNKLILSCWTRSV*HNTALR Trigger: CCGCAGGGCTGTGTTGTGCAAGACACTTCTGGTCCA...ACATGAAAGTATCAGTTTATTTCCTGAGATGTGCTCTCTGCTTAGATTCTCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CAA 90 bp | CCAGAGCTTTTGGAAGGTATTGTCGGAATGCTTAATTACACACTGAAGATTCCTACAGGTTTACAGATCTaGGACCAGAAGTGTCTTGCA | + |
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Preference number: 5 (lower is better) Translates to: PELLEGIVGMLNYTLKIPTGLQI*DQKCLA Trigger: TGCAAGACACTTCTGGTCCAAGATCTGTAAACCTGT...AGGAATCTTCAGTGTGTAATTAAGCATTCCGACAATACCTTCCAAAAGCTCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS-3UTR CAA 90 bp | CCAGAGCTTTTGGAAGGTATTGTCGGAATGCTTAATTACACACTGAAGATTCCTTGGTGTGATATATTTTaGAAGTCAGTGTGGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: PELLEGIVGMLNYTLKIPWCDIF*KSVWFF Trigger: GAAGAACCACACTGACTTCAAAAATATATCACACCA...AGGAATCTTCAGTGTGTAATTAAGCATTCCGACAATACCTTCCAAAAGCTCTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS GCA 72 bp | GCAAGCCAGACAGATCTGTACACCTCCGACGCCGGCTaGCCCGCGGCTGGGGCTGGAGCAGTACTCGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: ASQTDLYTSDAG*PAAGAGAVLVR Trigger: TCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS CAA 90 bp | CCAGCACCACCCAGCGGTGGGGGCAGGTTCTTGATCGCGTTGGAATaGATGAGAACTGAGTTCAAGGTGGCACTGGCTCCTAGCAGAGGG | + |
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Preference number: 6 (lower is better) Translates to: PAPPSGGGRFLIALE*MRTEFKVALAPSRG Trigger: CCCTCTGCTAGGAGCCAGTGCCACCTTGAACTCAGTTCTCATCAATTCCAACGCGATCAAGAACCTGCCCCCACCGCTGGGTGGTGCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS CAA 72 bp | CCCAGCGGTGGGGGCAGGTTCTTGATCGCGTTGGAATaGATGAGAACTGAGTTCAAGGTGGCACTGGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: PSGGGRFLIALE*MRTEFKVALAP Trigger: AGGAGCCAGTGCCACCTTGAACTCAGTTCTCATCAATTCCAACGCGATCAAGAACCTGCCCCCACCGCTGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS CAA 72 bp | GCACCACCCAGCGGTGGGGGCAGGTTCTTGATCGCGTaGGAATTGATGAGAACTGAGTTCAAGGTGGCACTG | + |
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Preference number: 6 (lower is better) Translates to: APPSGGGRFLIA*ELMRTEFKVAL Trigger: CAGTGCCACCTTGAACTCAGTTCTCATCAATTCCAACGCGATCAAGAACCTGCCCCCACCGCTGGGTGGTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS CAA 72 bp | GTGGTTCTTCTGGGATATCCATCCCCCGCGGCGGCGTaGTGGTCATTACCAAGGTTTTCAATGATGCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: VVLLGYPSPAAA*WSLPRFSMMLS Trigger: GGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS TCA 72 bp | CCGTGGGAGCCTTTCCGTTTGTGCTTGGTGCACACCTaGCCTTCTTTAAGGACAGGTTTACAGATCTTGGAC | + |
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Preference number: 6 (lower is better) Translates to: PWEPFRLCLVHT*PSLRTGLQILD Trigger: GTCCAAGATCTGTAAACCTGTCCTTAAAGAAGGTCAGGTGTGCACCAAGCACAAACGGAAAGGCTCCCACGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS CAA 90 bp | GAAGTCAGTGTGGTTCTTCTGGGATATCCATCCCCCGCGGCGGCGTaGTGGTCATTACCAAGGTTTTCAATGATGCTTTCCTCAATTTCC | + |
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Preference number: 6 (lower is better) Translates to: EVSVVLLGYPSPAAA*WSLPRFSMMLSSIS Trigger: GGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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| CDS CCA 72 bp | CTTGTCCTTTGGTGTGATATATTTTTGAAGTCAGTGTaGTTCTTCTGGGATATCCATCCCCCGCGGCGGCGT | + |
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Preference number: 6 (lower is better) Translates to: LVLWCDIFLKSV*FFWDIHPPRRR Trigger: ACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAGGACAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025803.9 |
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