Pregenerated sensors for DIO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034785Ensembl transcript IDs: ENSMUST00000082426.11, ENSMUST00000106748.2, ENSMUST00000129138.2, ENSMUST00000134366.8, ENSMUST00000147709.2, ENSMUST00000150974.2
Found 115 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACCACCACAGGGCACTGGGGGCTCCTGGCCAGCAGCATGCGGGCTaGCCGCACGCGCTCCTGGAGGCTCCGGTGCTGCCGGATGTCCAC | + |
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Preference number: 1 (lower is better) Translates to: HHHRALGAPGQQHAG*PHALLEAPVLPDVH Trigger: GTGGACATCCGGCAGCACCGGAGCCTCCAGGAGCGCGTGCGGGCAGCCCGCATGCTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR GCA 90 bp | TTGTGTCCACCACCACAGGGCACTGGGGGCTCCTGGCCAGCAGCATaGGGGCTGCCCGCACGCGCTCCTGGAGGCTCCGGTGCTGCCGGA | + |
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Preference number: 1 (lower is better) Translates to: LCPPPQGTGGSWPAA*GLPARAPGGSGAAG Trigger: TCCGGCAGCACCGGAGCCTCCAGGAGCGCGTGCGGGCAGCCCGCATGCTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGACACAA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR CCA 90 bp | TCTGGTTCTGCATTGTGTCCACCACCACAGGGCACTGGGGGCTCCTaGCCAGCAGCATGCGGGCTGCCCGCACGCGCTCCTGGAGGCTCC | + |
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Preference number: 1 (lower is better) Translates to: SGSALCPPPQGTGGS*PAACGLPARAPGGS Trigger: GGAGCCTCCAGGAGCGCGTGCGGGCAGCCCGCATGCTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGACACAATGCAGAACCAGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR CCA 90 bp | AGCTGGCTGCTCTGGTTCTGCATTGTGTCCACCACCACAGGGCACTaGGGGCTCCTGGCCAGCAGCATGCGGGCTGCCCGCACGCGCTCC | + |
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Preference number: 1 (lower is better) Translates to: SWLLWFCIVSTTTGH*GLLASSMRAARTRS Trigger: GGAGCGCGTGCGGGCAGCCCGCATGCTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGACACAATGCAGAACCAGAGCAGCCAGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR CCA 90 bp | TGGGGGCTCCTGGCCAGCAGCATGCGGGCTGCCCGCACGCGCTCCTaGAGGCTCCGGTGCTGCCGGATGTCCACGTTGTTCTTAAAAGCC | + |
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Preference number: 1 (lower is better) Translates to: WGLLASSMRAARTRS*RLRCCRMSTLFLKA Trigger: GGCTTTTAAGAACAACGTGGACATCCGGCAGCACCGGAGCCTCCAGGAGCGCGTGCGGGCAGCCCGCATGCTGCTGGCCAGGAGCCCCCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR GCA 90 bp | AGCAGCATGCGGGCTGCCCGCACGCGCTCCTGGAGGCTCCGGTGCTaGCGGATGTCCACGTTGTTCTTAAAAGCCCAGCCATCTGTGGCG | + |
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Preference number: 1 (lower is better) Translates to: SSMRAARTRSWRLRC*RMSTLFLKAQPSVA Trigger: CGCCACAGATGGCTGGGCTTTTAAGAACAACGTGGACATCCGGCAGCACCGGAGCCTCCAGGAGCGCGTGCGGGCAGCCCGCATGCTGCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR GCA 90 bp | GCCAGCAGCATGCGGGCTGCCCGCACGCGCTCCTGGAGGCTCCGGTaGTGCCGGATGTCCACGTTGTTCTTAAAAGCCCAGCCATCTGTG | + |
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Preference number: 1 (lower is better) Translates to: ASSMRAARTRSWRLR*CRMSTLFLKAQPSV Trigger: CACAGATGGCTGGGCTTTTAAGAACAACGTGGACATCCGGCAGCACCGGAGCCTCCAGGAGCGCGTGCGGGCAGCCCGCATGCTGCTGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR GCA 90 bp | CCTGTATCACGTAGAGCCTCTCAGGCAGGGCCGCGTAGAGCTGGCTaGTCTGGTTCTGCATTGTGTCCACCACCACAGGGCACTGGGGGC | + |
|
Preference number: 1 (lower is better) Translates to: PVSRRASQAGPRRAG*SGSALCPPPQGTGG Trigger: GCCCCCAGTGCCCTGTGGTGGTGGACACAATGCAGAACCAGAGCAGCCAGCTCTACGCGGCCCTGCCTGAGAGGCTCTACGTGATACAGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR CCA 90 bp | GGGAGCCTTCCTGCTGGTCCCCTAGAGCTGAGGCACGTGTCTAGGTaGAGTGCAAAGCTTTTCCAGGACAGCTCGGACTTCCTCAGGATT | + |
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Preference number: 1 (lower is better) Translates to: GSLPAGPLELRHVSR*SAKLFQDSSDFLRI Trigger: AATCCTGAGGAAGTCCGAGCTGTCCTGGAAAAGCTTTGCACTCCACCTAGACACGTGCCTCAGCTCTAGGGGACCAGCAGGAAGGCTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150974.2 |
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| 3UTR GCA 90 bp | GGAGCAGTGTGGAGCTGTAACTTACTTTTGCTAACAGCTCAGCATTaGTTTATTTCTGGTTGTCACAGTTTGTGCTGTGAGCTGCATTGC | + |
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Preference number: 1 (lower is better) Translates to: GAVWSCNLLLLTAQH*FISGCHSLCCELHC Trigger: GCAATGCAGCTCACAGCACAAACTGTGACAACCAGAAATAAAGCAATGCTGAGCTGTTAGCAAAAGTAAGTTACAGCTCCACACTGCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR CCA 90 bp | AGGAAATCGGCTGTGGAGGCAAAGTCATCTACGAGTCTCTTGAACTaGTCAAATTTGAGAAGAAATGAAGGTCAGGTGCAACTGCCAAAG | + |
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Preference number: 1 (lower is better) Translates to: RKSAVEAKSSTSLLN*SNLRRNEGQVQLPK Trigger: CTTTGGCAGTTGCACCTGACCTTCATTTCTTCTCAAATTTGACCAGTTCAAGAGACTCGTAGATGACTTTGCCTCCACAGCCGATTTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 |
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| 3UTR GCA 90 bp | CAATCTCAACAGATTTCAATCTTTCGGCCAGAAAAGTGTTTCCAATaGCTATGGTTCCTACAAGCAGAACATGCCTGCCTCTTGCTTGTG | + |
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Preference number: 1 (lower is better) Translates to: QSQQISIFRPEKCFQ*LWFLQAEHACLLLV Trigger: CACAAGCAAGAGGCAGGCATGTTCTGCTTGTAGGAACCATAGGCATTGGAAACACTTTTCTGGCCGAAAGATTGAAATCTGTTGAGATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR CCA 90 bp | CAACAGATTTCAATCTTTCGGCCAGAAAAGTGTTTCCAATGCCTATaGTTCCTACAAGCAGAACATGCCTGCCTCTTGCTTGTGCTAAAC | + |
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Preference number: 1 (lower is better) Translates to: QQISIFRPEKCFQCL*FLQAEHACLLLVLN Trigger: GTTTAGCACAAGCAAGAGGCAGGCATGTTCTGCTTGTAGGAACCATAGGCATTGGAAACACTTTTCTGGCCGAAAGATTGAAATCTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR GCA 90 bp | GAAAAGTGTTTCCAATGCCTATGGTTCCTACAAGCAGAACATGCCTaGCTCTTGCTTGTGCTAAACAAACCAGTTCAGCATTTTATACGA | + |
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Preference number: 1 (lower is better) Translates to: EKCFQCLWFLQAEHA*LLLVLNKPVQHFIR Trigger: TCGTATAAAATGCTGAACTGGTTTGTTTAGCACAAGCAAGAGGCAGGCATGTTCTGCTTGTAGGAACCATAGGCATTGGAAACACTTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR TCA 90 bp | CCAGATTCCTGTGCAATCTATTTCAAGATGGTAGAGGGAGTAGAATaGGATTCTATGTTGCCATGGAAACACCTATCACCAACAATCTCA | + |
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Preference number: 1 (lower is better) Translates to: PDSCAIYFKMVEGVE*DSMLPWKHLSPTIS Trigger: TGAGATTGTTGGTGATAGGTGTTTCCATGGCAACATAGAATCTCATTCTACTCCCTCTACCATCTTGAAATAGATTGCACAGGAATCTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR-3UTR CCA 90 bp | TTGGGGAGCCTTCCTGCTGGTCCCCTAGAGCTGAGGCACGTGTCTAGGTGGAGTGGAAAGTACCAAGCTTaGGGAGCCTTCCTGCTGGTC | + |
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Preference number: 2 (lower is better) Translates to: LGSLPAGPLELRHVSRWSGKYQA*GAFLLV Trigger: GACCAGCAGGAAGGCTCCCCAAGCTTGGTACTTTCC...ACTCCACCTAGACACGTGCCTCAGCTCTAGGGGACCAGCAGGAAGGCTCCCCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150974.2 |
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| 3UTR-3UTR GCA 90 bp | TACCCTTGTAGCAGATCCTGCCCTCCTGTATCACGTAGAGCCTCTCAGGCAGGGCCGCGTAGAGCTGGCTaGTCTGGTTCTGCATTGTGT | + |
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Preference number: 2 (lower is better) Translates to: YPCSRSCPPVSRRASQAGPRRAG*SGSALC Trigger: ACACAATGCAGAACCAGAGCAGCCAGCTCTACGCGG...CCCTGCCTGAGAGGCTCTACGTGATACAGGAGGGCAGGATCTGCTACAAGGGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCTTCCTGCTGGTCCCCTAGAGCTGAGGCACGTGTCTAGGTGGAGTGCAAAGGCCAGCTTTACCCTGTaGCGTGAGCTTCTTCAATGT | + |
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Preference number: 2 (lower is better) Translates to: SLPAGPLELRHVSRWSAKASFTL*RELLQC Trigger: ACATTGAAGAAGCTCACGCCACAGGGTAAAGCTGGC...CTTTGCACTCCACCTAGACACGTGCCTCAGCTCTAGGGGACCAGCAGGAAGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150974.2 |
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| 3UTR-3UTR CCA 90 bp | TACCCTTGTAGCAGATCCTGCCCTCCTGTATCACGTAGAGCCTCTCAGGCAGGGAAGCCCAGCCATCTGTaGCGTGAGCTTCTTCAATGT | + |
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Preference number: 2 (lower is better) Translates to: YPCSRSCPPVSRRASQAGKPSHL*RELLQC Trigger: ACATTGAAGAAGCTCACGCCACAGATGGCTGGGCTT...CCCTGCCTGAGAGGCTCTACGTGATACAGGAGGGCAGGATCTGCTACAAGGGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR-3UTR TCA 90 bp | CCAGGACAGCTCGGACTTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTACCCTAAATTTGAGAAGAAATaGAGGTCAGGTGCAACTGCC | + |
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Preference number: 2 (lower is better) Translates to: PGQLGLPQDCSSKGQLYPKFEKK*RSGATA Trigger: GGCAGTTGCACCTGACCTTCATTTCTTCTCAAATTT...AGGGTAAAGCTGGCCCTTGGAACTACAATCCTGAGGAAGTCCGAGCTGTCCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 |
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| 3UTR-3UTR GCA 90 bp | GTGGAGTGCAAAGCTTTTCCAGGACAGCTCGGACTTCCTCAGGATTGTAGTTCCTGCTGTGAGCTGCATTaGCTCCCTGGTAGTTATTTG | + |
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Preference number: 2 (lower is better) Translates to: VECKAFPGQLGLPQDCSSCCELH*LPGSYL Trigger: CAAATAACTACCAGGGAGGCAATGCAGCTCACAGCA...GGAACTACAATCCTGAGGAAGTCCGAGCTGTCCTGGAAAAGCTTTGCACTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150974.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAGATCCTGCCCTCCTGTATCACGTAGAGCCTCTCAGGCAGGGCCGCGTAGAACGAGTCTCTTGAACTaGTCAAATTTGAGAAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: SRSCPPVSRRASQAGPRRTSLLN*SNLRRN Trigger: ATTTCTTCTCAAATTTGACCAGTTCAAGAGACTCGT...TCTACGCGGCCCTGCCTGAGAGGCTCTACGTGATACAGGAGGGCAGGATCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR-3UTR TCA 90 bp | TTCCAGGACAGCTCGGACTTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTACCAAATTTGAGAAGAAATaGAGGTCAGGTGCAACTGCC | + |
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Preference number: 2 (lower is better) Translates to: FQDSSDFLRIVVPRASFTKFEKK*RSGATA Trigger: GGCAGTTGCACCTGACCTTCATTTCTTCTCAAATTT...GGTAAAGCTGGCCCTTGGAACTACAATCCTGAGGAAGTCCGAGCTGTCCTGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 |
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| 3UTR-3UTR GCA 90 bp | TGCCTGCCTCTTGCTTGTGCTAAACAAACCAGTTCAGCATTTTATACGATTGGGCTCTGGATTGGTCTCTaGTGTGGGAGCAGTGTGGAG | + |
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Preference number: 2 (lower is better) Translates to: CLPLACAKQTSSAFYTIGLWIGL*CGSSVE Trigger: CTCCACACTGCTCCCACAGCAGAGACCAATCCAGAG...CCCAATCGTATAAAATGCTGAACTGGTTTGTTTAGCACAAGCAAGAGGCAGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR-3UTR GCA 90 bp | TCCAATGCTATCGAACACAAAAGACCAGTAAGAGACTGTGACCCAGGAGGACAGTGCTGTGAGCTGCATTaGCTCCCTGGTAGTTATTTG | + |
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Preference number: 2 (lower is better) Translates to: SNAIEHKRPVRDCDPGGQCCELH*LPGSYL Trigger: CAAATAACTACCAGGGAGGCAATGCAGCTCACAGCA...CTGTCCTCCTGGGTCACAGTCTCTTACTGGTCTTTTGTGTTCGATAGCATTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR-3UTR GCA 90 bp | TCCAATGCTATCGAACACAAAAGACCAGTAAGAGACTGTGACCCAGGAGGACAGCAAGCAGAACATGCCTaGCTCTTGCTTGTGCTAAAC | + |
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Preference number: 2 (lower is better) Translates to: SNAIEHKRPVRDCDPGGQQAEHA*LLLVLN Trigger: GTTTAGCACAAGCAAGAGGCAGGCATGTTCTGCTTG...CTGTCCTCCTGGGTCACAGTCTCTTACTGGTCTTTTGTGTTCGATAGCATTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR-3UTR GCA 90 bp | AAAGACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGGGAGCCTTCCTGCTGCTAACAGCTCAGCATTaGTTTATTTCTGGTTGTCAC | + |
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Preference number: 2 (lower is better) Translates to: KDICTGVGKYQAWGAFLLLTAQH*FISGCH Trigger: GTGACAACCAGAAATAAAGCAATGCTGAGCTGTTAG...CAGCAGGAAGGCTCCCCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR-3UTR CCA 90 bp | ATCTCAACAGATTTCAATCTTTCGGCCAGAAAAGTGTTTCCAATGCCTATGGTTGGAAAGTACCAAGCTTaGGGAGCCTTCCTGCTGGTC | + |
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Preference number: 2 (lower is better) Translates to: ISTDFNLSARKVFPMPMVGKYQA*GAFLLV Trigger: GACCAGCAGGAAGGCTCCCCAAGCTTGGTACTTTCC...AACCATAGGCATTGGAAACACTTTTCTGGCCGAAAGATTGAAATCTGTTGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR-3UTR CCA 90 bp | TTCCAGGACAGCTCGGACTTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTACCACGAGTCTCTTGAACTaGTCAAATTTGAGAAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: FQDSSDFLRIVVPRASFTTSLLN*SNLRRN Trigger: ATTTCTTCTCAAATTTGACCAGTTCAAGAGACTCGT...GGTAAAGCTGGCCCTTGGAACTACAATCCTGAGGAAGTCCGAGCTGTCCTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
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| 3UTR CAA 90 bp | ATGATGAGGAAATCGGCTGTGGAGGCAAAGTCATCTACGAGTCTCTaGAACTGGTCAAATTTGAGAAGAAATGAAGGTCAGGTGCAACTG | + |
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Preference number: 2 (lower is better) Translates to: MMRKSAVEAKSSTSL*NWSNLRRNEGQVQL Trigger: CAGTTGCACCTGACCTTCATTTCTTCTCAAATTTGACCAGTTCAAGAGACTCGTAGATGACTTTGCCTCCACAGCCGATTTCCTCATCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 |
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| 3UTR-3UTR CCA 90 bp | TTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTACCCTGTGGCGTGAGCTTCTTACGAGTCTCTTGAACTaGTCAAATTTGAGAAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: FLRIVVPRASFTLWRELLTSLLN*SNLRRN Trigger: ATTTCTTCTCAAATTTGACCAGTTCAAGAGACTCGT...AAGAAGCTCACGCCACAGGGTAAAGCTGGCCCTTGGAACTACAATCCTGAGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000147709.2 ENSMUST00000150974.2 |
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| 3UTR-3UTR GCA 90 bp | TGCAATCTATTTCAAGATGGTAGAGGGAGTAGAATGAGATTCTATGTTGCCATGGTTTGTGCTGTGAGCTaGATTGCCTCCCTGGTAGTT | + |
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Preference number: 2 (lower is better) Translates to: CNLFQDGRGSRMRFYVAMVCAVS*IASLVV Trigger: AACTACCAGGGAGGCAATGCAGCTCACAGCACAAAC...CATGGCAACATAGAATCTCATTCTACTCCCTCTACCATCTTGAAATAGATTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR CAA 90 bp | CTTTTGCTAACAGCTCAGCATTGCTTTATTTCTGGTTGTCACAGTTaGTGCTGTGAGCTGCATTGCCTCCCTGGTAGTTATTTGTTTAGA | + |
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Preference number: 2 (lower is better) Translates to: LLLTAQHCFISGCHS*CCELHCLPGSYLFR Trigger: TCTAAACAAATAACTACCAGGGAGGCAATGCAGCTCACAGCACAAACTGTGACAACCAGAAATAAAGCAATGCTGAGCTGTTAGCAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR CCA 72 bp | CTGGCCAGCAGCATGCGGGCTGCCCGCACGCGCTCCTaGAGGCTCCGGTGCTGCCGGATGTCCACGTTGTTC | + |
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Preference number: 3 (lower is better) Translates to: LASSMRAARTRS*RLRCCRMSTLF Trigger: GAACAACGTGGACATCCGGCAGCACCGGAGCCTCCAGGAGCGCGTGCGGGCAGCCCGCATGCTGCTGGCCAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR CCA 72 bp | GCATTGTGTCCACCACCACAGGGCACTGGGGGCTCCTaGCCAGCAGCATGCGGGCTGCCCGCACGCGCTCCT | + |
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Preference number: 3 (lower is better) Translates to: ALCPPPQGTGGS*PAACGLPARAP Trigger: AGGAGCGCGTGCGGGCAGCCCGCATGCTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGACACAATGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR GCA 72 bp | CGGGCTGCCCGCACGCGCTCCTGGAGGCTCCGGTGCTaGCGGATGTCCACGTTGTTCTTAAAAGCCCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: RAARTRSWRLRC*RMSTLFLKAQP Trigger: TGGCTGGGCTTTTAAGAACAACGTGGACATCCGGCAGCACCGGAGCCTCCAGGAGCGCGTGCGGGCAGCCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR GCA 72 bp | CGTAGAGCCTCTCAGGCAGGGCCGCGTAGAGCTGGCTaGTCTGGTTCTGCATTGTGTCCACCACCACAGGGC | + |
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Preference number: 3 (lower is better) Translates to: RRASQAGPRRAG*SGSALCPPPQG Trigger: GCCCTGTGGTGGTGGACACAATGCAGAACCAGAGCAGCCAGCTCTACGCGGCCCTGCCTGAGAGGCTCTACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR CCA 72 bp | GTGAGTGAGTGCCCTCCCACCAGAAGGTGGACACTCTaGATTGGTCTCTGCTGTGGGAGCAGTGTGGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: VSECPPTRRWTL*IGLCCGSSVEL Trigger: CAGCTCCACACTGCTCCCACAGCAGAGACCAATCCAGAGTGTCCACCTTCTGGTGGGAGGGCACTCACTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR GCA 72 bp | AGTTCCAAGGGCCAGCTTTACCCTTGTAGCAGATCCTaGCCTCCTGTATCACGTAGAGCCTCTCAGGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: SSKGQLYPCSRS*PPVSRRASQAG Trigger: CCCTGCCTGAGAGGCTCTACGTGATACAGGAGGGCAGGATCTGCTACAAGGGTAAAGCTGGCCCTTGGAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR CCA 72 bp | TCCAAGCATGTGAGTGAGTGCCCTCCCACCAGAAGGTaGACACTCTGGATTGGTCTCTGCTGTGGGAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: SKHVSECPPTRR*TLWIGLCCGSS Trigger: ACTGCTCCCACAGCAGAGACCAATCCAGAGTGTCCACCTTCTGGTGGGAGGGCACTCACTCACATGCTTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR-3UTR CAA 90 bp | CTTTACCCTTGTAGCAGATCCTGCCCTCCTGTATCACGTAGAGCCTCTCAGGCATGCTCTGGTTCTGCATaGTGTCCACCACCACAGGGC | + |
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Preference number: 3 (lower is better) Translates to: LYPCSRSCPPVSRRASQACSGSA*CPPPQG Trigger: GCCCTGTGGTGGTGGACACAATGCAGAACCAGAGCA...TGCCTGAGAGGCTCTACGTGATACAGGAGGGCAGGATCTGCTACAAGGGTAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR TCA 72 bp | ACGACACTTCAGAAGTCTGTCATCCAAGCATGTGAGTaGGTGCCCTCCCACCAGAAGGTGGACACTCTGGAT | + |
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Preference number: 3 (lower is better) Translates to: TTLQKSVIQACE*VPSHQKVDTLD Trigger: ATCCAGAGTGTCCACCTTCTGGTGGGAGGGCACTCACTCACATGCTTGGATGACAGACTTCTGAAGTGTCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR TCA 72 bp | AGTCACGACACTTCAGAAGTCTGTCATCCAAGCATGTaGGTGAGTGCCCTCCCACCAGAAGGTGGACACTCT | + |
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Preference number: 3 (lower is better) Translates to: SHDTSEVCHPSM*VSALPPEGGHS Trigger: AGAGTGTCCACCTTCTGGTGGGAGGGCACTCACTCACATGCTTGGATGACAGACTTCTGAAGTGTCGTGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR-3UTR CAA 90 bp | GACTTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTACCCTTGTAGCAGATCCTTGCCGGATGTCCACGTaGTTCTTAAAAGCCCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: DFLRIVVPRASFTLVADPCRMST*FLKAQP Trigger: TGGCTGGGCTTTTAAGAACAACGTGGACATCCGGCA...AGGATCTGCTACAAGGGTAAAGCTGGCCCTTGGAACTACAATCCTGAGGAAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
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| 3UTR CCA 72 bp | CTGGGAACACAGGTCAAAGGTAAAAGACATCTGTACTaGTGTGGGAAAGTACCAAGCTTGGGGAGCCTTCCT | + |
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Preference number: 3 (lower is better) Translates to: LGTQVKGKRHLY*CGKVPSLGSLP Trigger: AGGAAGGCTCCCCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTTTACCTTTGACCTGTGTTCCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
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| 3UTR CCA 72 bp | GGACACTCTGGATTGGTCTCTGCTGTGGGAGCAGTGTaGAGCTGTAACTTACTTTTGCTAACAGCTCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: GHSGLVSAVGAV*SCNLLLLTAQH Trigger: ATGCTGAGCTGTTAGCAAAAGTAAGTTACAGCTCCACACTGCTCCCACAGCAGAGACCAATCCAGAGTGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| 3UTR TCA 72 bp | CAATGCTATCGAACACAAAAGACCAGTAAGAGACTGTaGCCCAGGAGGACAGAGTCACAACAGGGCCTACAT | + |
|
Preference number: 3 (lower is better) Translates to: QCYRTQKTSKRL*PRRTESQQGLH Trigger: ATGTAGGCCCTGTTGTGACTCTGTCCTCCTGGGTCACAGTCTCTTACTGGTCTTTTGTGTTCGATAGCATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR-3UTR CAA 90 bp | TTTGACGTCATCTTCAGGAGTCACGACACTTCAGAAGTCTGTCATCCAAGCATGTCTGGTTGTCACAGTTaGTGCTGTGAGCTGCATTGC | + |
|
Preference number: 3 (lower is better) Translates to: FDVIFRSHDTSEVCHPSMSGCHS*CCELHC Trigger: GCAATGCAGCTCACAGCACAAACTGTGACAACCAGA...CATGCTTGGATGACAGACTTCTGAAGTGTCGTGACTCCTGAAGATGACGTCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR-3UTR CAA 90 bp | TCCAATGCTATCGAACACAAAAGACCAGTAAGAGACTGTGACCCAGGAGGACAGGAACATGCCTGCCTCTaGCTTGTGCTAAACAAACCA | + |
|
Preference number: 3 (lower is better) Translates to: SNAIEHKRPVRDCDPGGQEHACL*LVLNKP Trigger: TGGTTTGTTTAGCACAAGCAAGAGGCAGGCATGTTC...CTGTCCTCCTGGGTCACAGTCTCTTACTGGTCTTTTGTGTTCGATAGCATTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR GCA 72 bp | TTCCAATGCCTATGGTTCCTACAAGCAGAACATGCCTaGCTCTTGCTTGTGCTAAACAAACCAGTTCAGCAT | + |
|
Preference number: 3 (lower is better) Translates to: FQCLWFLQAEHA*LLLVLNKPVQH Trigger: ATGCTGAACTGGTTTGTTTAGCACAAGCAAGAGGCAGGCATGTTCTGCTTGTAGGAACCATAGGCATTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR GCA 72 bp | AAGCTTTGGCATCAGTGCCAGAGAGCCAGATTCCTGTaGAATCTATTTCAAGATGGTAGAGGGAGTAGAATG | + |
|
Preference number: 3 (lower is better) Translates to: KLWHQCQRARFL*NLFQDGRGSRM Trigger: CATTCTACTCCCTCTACCATCTTGAAATAGATTGCACAGGAATCTGGCTCTCTGGCACTGATGCCAAAGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR CCA 72 bp | TCAATCTTTCGGCCAGAAAAGTGTTTCCAATGCCTATaGTTCCTACAAGCAGAACATGCCTGCCTCTTGCTT | + |
|
Preference number: 3 (lower is better) Translates to: SIFRPEKCFQCL*FLQAEHACLLL Trigger: AAGCAAGAGGCAGGCATGTTCTGCTTGTAGGAACCATAGGCATTGGAAACACTTTTCTGGCCGAAAGATTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR CCA 72 bp | ACAGAGTCACAACAGGGCCTACATGGCAGCTTTTGCTaGCGCCTGCGATTTGGTTTAGTTAAAGTTATAAAG | + |
|
Preference number: 3 (lower is better) Translates to: TESQQGLHGSFC*RLRFGLVKVIK Trigger: CTTTATAACTTTAACTAAACCAAATCGCAGGCGCCAGCAAAAGCTGCCATGTAGGCCCTGTTGTGACTCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR CCA 72 bp | GCTGTGGAGGCAAAGTCATCTACGAGTCTCTTGAACTaGTCAAATTTGAGAAGAAATGAAGGTCAGGTGCAA | + |
|
Preference number: 3 (lower is better) Translates to: AVEAKSSTSLLN*SNLRRNEGQVQ Trigger: TTGCACCTGACCTTCATTTCTTCTCAAATTTGACCAGTTCAAGAGACTCGTAGATGACTTTGCCTCCACAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 |
||
| 3UTR TCA 72 bp | ATTGGGTCTATAAGTGGCAAAATTGGACACATGGATTaGGCTTTTGACGTCATCTTCAGGAGTCACGACACT | + |
|
Preference number: 3 (lower is better) Translates to: IGSISGKIGHMD*AFDVIFRSHDT Trigger: AGTGTCGTGACTCCTGAAGATGACGTCAAAAGCTCAATCCATGTGTCCAATTTTGCCACTTATAGACCCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR GCA 72 bp | GCTTTATTTCTGGTTGTCACAGTTTGTGCTGTGAGCTaGATTGCCTCCCTGGTAGTTATTTGTTTAGATCAG | + |
|
Preference number: 3 (lower is better) Translates to: ALFLVVTVCAVS*IASLVVICLDQ Trigger: CTGATCTAAACAAATAACTACCAGGGAGGCAATGCAGCTCACAGCACAAACTGTGACAACCAGAAATAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR GCA 72 bp | TGGAGCTGTAACTTACTTTTGCTAACAGCTCAGCATTaGTTTATTTCTGGTTGTCACAGTTTGTGCTGTGAG | + |
|
Preference number: 3 (lower is better) Translates to: WSCNLLLLTAQH*FISGCHSLCCE Trigger: CTCACAGCACAAACTGTGACAACCAGAAATAAAGCAATGCTGAGCTGTTAGCAAAAGTAAGTTACAGCTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR TCA 72 bp | TGTGCAATCTATTTCAAGATGGTAGAGGGAGTAGAATaGGATTCTATGTTGCCATGGAAACACCTATCACCA | + |
|
Preference number: 3 (lower is better) Translates to: CAIYFKMVEGVE*DSMLPWKHLSP Trigger: TGGTGATAGGTGTTTCCATGGCAACATAGAATCTCATTCTACTCCCTCTACCATCTTGAAATAGATTGCACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR TCA 72 bp | TCATACACAAATATAAAAAGAAGCAGACATGACAGATaGAGCCATGGCTACCTATCAGTCCAATGCTATCGA | + |
|
Preference number: 3 (lower is better) Translates to: SYTNIKRSRHDR*SHGYLSVQCYR Trigger: TCGATAGCATTGGACTGATAGGTAGCCATGGCTTCATCTGTCATGTCTGCTTCTTTTTATATTTGTGTATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR GCA 72 bp | TTTGGTTTAGTTAAAGTTATAAAGCTTTGGCATCAGTaGCAGAGAGCCAGATTCCTGTGCAATCTATTTCAA | + |
|
Preference number: 3 (lower is better) Translates to: FGLVKVIKLWHQ*QRARFLCNLFQ Trigger: TTGAAATAGATTGCACAGGAATCTGGCTCTCTGGCACTGATGCCAAAGCTTTATAACTTTAACTAAACCAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR GCA 90 bp | CATTGTGTCCACCACCACAGGGCACTGGGGGCTCCTGGCCAGCAGCATGCGGGCACACCAGGGGCCTGCTaGCTTCAGGACAAACCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: HCVHHHRALGAPGQQHAGTPGAC*LQDKPE Trigger: TTCTGGTTTGTCCTGAAGGCAGCAGGCCCCTGGTGT...GCCCGCATGCTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGACACAATG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
||
| CDS-3UTR CCA 90 bp | ACCAGAAGGTGGACACTCTGGATTGGTCTCTGCTGTGGGAGCAGTGTGGAGCTGGGCACTGGGGGCTCCTaGCCAGCAGCATGCGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: TRRWTLWIGLCCGSSVELGTGGS*PAACGL Trigger: CAGCCCGCATGCTGCTGGCCAGGAGCCCCCAGTGCC...CAGCTCCACACTGCTCCCACAGCAGAGACCAATCCAGAGTGTCCACCTTCTGGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR CCA 90 bp | CTTGTAGCAGATCCTGCCCTCCTGTATCACGTAGAGCCTCTCAGGCAGGGCCGCGCCATCCCGGTCTTCTaGCCCATGGCCAGGATGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LVADPALLYHVEPLRQGRAIPVF*PMARML Trigger: GAGCATCCTGGCCATGGGCCAGAAGACCGGGATGGC...GCGGCCCTGCCTGAGAGGCTCTACGTGATACAGGAGGGCAGGATCTGCTACAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
||
| CDS-3UTR GCA 90 bp | GCAGATCCTGCCCTCCTGTATCACGTAGAGCCTCTCAGGCAGGGCCGCGTAGAGACCTCCAAGGCCACCTaGAGGAATATCACAAGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: ADPALLYHVEPLRQGRVETSKAT*RNITSR Trigger: GCGGCTTGTGATATTCCTGCAGGTGGCCTTGGAGGT...CTCTACGCGGCCCTGCCTGAGAGGCTCTACGTGATACAGGAGGGCAGGATCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134366.8 |
||
| CDS-3UTR CCA 90 bp | ACCAGAAGGTGGACACTCTGGATTGGTCTCTGCTGTGGGAGCAGTGTGGAGCTGGCCATCCCGGTCTTCTaGCCCATGGCCAGGATGCTC | + |
|
Preference number: 4 (lower is better) Translates to: TRRWTLWIGLCCGSSVELAIPVF*PMARML Trigger: GAGCATCCTGGCCATGGGCCAGAAGACCGGGATGGC...CAGCTCCACACTGCTCCCACAGCAGAGACCAATCCAGAGTGTCCACCTTCTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR GCA 90 bp | GGTAAAAGACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGGGAGCCTTCCTTCCTGGCCAGCAGCATaGGGGCTGCCCGCACGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: GKRHLYWCGKVPSLGSLPSWPAA*GLPARA Trigger: AGCGCGTGCGGGCAGCCCGCATGCTGCTGGCCAGGA...AGGAAGGCTCCCCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTTTACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR CCA 90 bp | CCAGGACAGCTCGGACTTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTACCCTGCCATCCCGGTCTTCTaGCCCATGGCCAGGATGCTC | + |
|
Preference number: 4 (lower is better) Translates to: PGQLGLPQDCSSKGQLYPAIPVF*PMARML Trigger: GAGCATCCTGGCCATGGGCCAGAAGACCGGGATGGC...AGGGTAAAGCTGGCCCTTGGAACTACAATCCTGAGGAAGTCCGAGCTGTCCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
||
| 3UTR CAA 72 bp | GTGAGTGCCCTCCCACCAGAAGGTGGACACTCTGGATaGGTCTCTGCTGTGGGAGCAGTGTGGAGCTGTAAC | + |
|
Preference number: 4 (lower is better) Translates to: VSALPPEGGHSG*VSAVGAVWSCN Trigger: GTTACAGCTCCACACTGCTCCCACAGCAGAGACCAATCCAGAGTGTCCACCTTCTGGTGGGAGGGCACTCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR GCA 90 bp | ACCAGAAGGTGGACACTCTGGATTGGTCTCTGCTGTGGGAGCAGTGTGGAGCTGCCGCGTAGAGCTGGCTaGTCTGGTTCTGCATTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: TRRWTLWIGLCCGSSVELPRRAG*SGSALC Trigger: ACACAATGCAGAACCAGAGCAGCCAGCTCTACGCGG...CAGCTCCACACTGCTCCCACAGCAGAGACCAATCCAGAGTGTCCACCTTCTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR CCA 90 bp | AAGGTAAAAGACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGGGAGCCTTCACCACCACAGGGCACTaGGGGCTCCTGGCCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KVKDICTGVGKYQAWGAFTTTGH*GLLASS Trigger: GCTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGT...GAAGGCTCCCCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTTTACCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR TCA 90 bp | GACTTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTACCCTGTGGCGTGAGCTTCCAGGATGCTCTGTTTaGCTCTCCCTGGGAACAGCG | + |
|
Preference number: 4 (lower is better) Translates to: DFLRIVVPRASFTLWRELPGCSV*LSLGTA Trigger: CGCTGTTCCCAGGGAGAGTCAAACAGAGCATCCTGG...AAGCTCACGCCACAGGGTAAAGCTGGCCCTTGGAACTACAATCCTGAGGAAGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000147709.2 ENSMUST00000150974.2 |
||
| CDS-3UTR TCA 90 bp | TTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTACCCTGTGGCGTGAGCTTCTTCCAGGATGCTCTGTTTaGCTCTCCCTGGGAACAGCG | + |
|
Preference number: 4 (lower is better) Translates to: FLRIVVPRASFTLWRELLPGCSV*LSLGTA Trigger: CGCTGTTCCCAGGGAGAGTCAAACAGAGCATCCTGG...AAGAAGCTCACGCCACAGGGTAAAGCTGGCCCTTGGAACTACAATCCTGAGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000147709.2 ENSMUST00000150974.2 |
||
| CDS-3UTR TCA 90 bp | ACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGGGAGCCTTCCTGCTGGTCCAGGGGCCTGCTGCCTTaGATGAAATCCCAGATGTTG | + |
|
Preference number: 4 (lower is better) Translates to: TSVLVWESTKLGEPSCWSRGLLP*MKSQML Trigger: CAACATCTGGGATTTCATTCAAGGCAGCAGGCCCCT...GGACCAGCAGGAAGGCTCCCCAAGCTTGGTACTTTCCCACACCAGTACAGATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
||
| CDS-3UTR CCA 90 bp | CAGGTCAAAGGTAAAAGACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGGGGCCATCCCGGTCTTCTaGCCCATGGCCAGGATGCTC | + |
|
Preference number: 4 (lower is better) Translates to: QVKGKRHLYWCGKVPSLGAIPVF*PMARML Trigger: GAGCATCCTGGCCATGGGCCAGAAGACCGGGATGGC...CCCCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTTTACCTTTGACCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
||
| CDS-3UTR GCA 90 bp | AAAGCTTTTCCAGGACAGCTCGGACTTCCTCAGGATTGTAGTTCCAAGGGCCAGACCTCCAAGGCCACCTaGAGGAATATCACAAGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: KAFPGQLGLPQDCSSKGQTSKAT*RNITSR Trigger: GCGGCTTGTGATATTCCTGCAGGTGGCCTTGGAGGT...CTGGCCCTTGGAACTACAATCCTGAGGAAGTCCGAGCTGTCCTGGAAAAGCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000134366.8 ENSMUST00000150974.2 |
||
| CDS-3UTR TCA 90 bp | TCCAATGCTATCGAACACAAAAGACCAGTAAGAGACTGTGACCCAGGAGGACAGCCAGGATGCTCTGTTTaGCTCTCCCTGGGAACAGCG | + |
|
Preference number: 4 (lower is better) Translates to: SNAIEHKRPVRDCDPGGQPGCSV*LSLGTA Trigger: CGCTGTTCCCAGGGAGAGTCAAACAGAGCATCCTGG...CTGTCCTCCTGGGTCACAGTCTCTTACTGGTCTTTTGTGTTCGATAGCATTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR TCA 90 bp | ATGATGAGGAAATCGGCTGTGGAGGCAAAGTCATCTACGAGTCTCTTGAACTGGCCAGGATGCTCTGTTTaGCTCTCCCTGGGAACAGCG | + |
|
Preference number: 4 (lower is better) Translates to: MMRKSAVEAKSSTSLLNWPGCSV*LSLGTA Trigger: CGCTGTTCCCAGGGAGAGTCAAACAGAGCATCCTGG...CCAGTTCAAGAGACTCGTAGATGACTTTGCCTCCACAGCCGATTTCCTCATCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
||
| CDS-3UTR GCA 90 bp | ATGATGAGGAAATCGGCTGTGGAGGCAAAGTCATCTACGAGTCTCTTGAACTGGACACCAGGGGCCTGCTaGCTTCAGGACAAACCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: MMRKSAVEAKSSTSLLNWTPGAC*LQDKPE Trigger: TTCTGGTTTGTCCTGAAGGCAGCAGGCCCCTGGTGT...CCAGTTCAAGAGACTCGTAGATGACTTTGCCTCCACAGCCGATTTCCTCATCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 |
||
| CDS-3UTR TCA 90 bp | TCTGGATTGGTCTCTGCTGTGGGAGCAGTGTGGAGCTGTAACTTACTTTTGCTAAGGGGCCTGCTGCCTTaGATGAAATCCCAGATGTTG | + |
|
Preference number: 4 (lower is better) Translates to: SGLVSAVGAVWSCNLLLLRGLLP*MKSQML Trigger: CAACATCTGGGATTTCATTCAAGGCAGCAGGCCCCT...TAGCAAAAGTAAGTTACAGCTCCACACTGCTCCCACAGCAGAGACCAATCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR GCA 90 bp | CACAGGTCAAAGGTAAAAGACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGACCTCCAAGGCCACCTaGAGGAATATCACAAGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: HRSKVKDICTGVGKYQAWTSKAT*RNITSR Trigger: GCGGCTTGTGATATTCCTGCAGGTGGCCTTGGAGGT...CCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTTTACCTTTGACCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
||
| CDS-3UTR GCA 90 bp | AATGATGAGGAAATCGGCTGTGGAGGCAAAGTCATCTACGAGTCTCTTGAACTGACCTCCAAGGCCACCTaGAGGAATATCACAAGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: NDEEIGCGGKVIYESLELTSKAT*RNITSR Trigger: GCGGCTTGTGATATTCCTGCAGGTGGCCTTGGAGGT...CAGTTCAAGAGACTCGTAGATGACTTTGCCTCCACAGCCGATTTCCTCATCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
||
| CDS-3UTR CCA 90 bp | CGGCCAGAAAAGTGTTTCCAATGCCTATGGTTCCTACAAGCAGAACATGCCTGCAGGCACGTGTCTAGGTaGAGTGCAAAGCTTTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RPEKCFQCLWFLQAEHACRHVSR*SAKLFQ Trigger: CTGGAAAAGCTTTGCACTCCACCTAGACACGTGCCT...GCAGGCATGTTCTGCTTGTAGGAACCATAGGCATTGGAAACACTTTTCTGGCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR TCA 90 bp | AAGGTAAAAGACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGGGAGCCTTCGCCTGCTGCCTTGAATaGAATCCCAGATGTTGCACT | + |
|
Preference number: 4 (lower is better) Translates to: KVKDICTGVGKYQAWGAFACCLE*NPRCCT Trigger: AGTGCAACATCTGGGATTTCATTCAAGGCAGCAGGC...GAAGGCTCCCCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTTTACCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
||
| CDS-3UTR GCA 90 bp | TGCCTGCCTCTTGCTTGTGCTAAACAAACCAGTTCAGCATTTTATACGATTGGGCTGTCTTCCAGTCTCTaGCAGCGGACCTTCAGGACA | + |
|
Preference number: 4 (lower is better) Translates to: CLPLACAKQTSSAFYTIGLSSSL*QRTFRT Trigger: TGTCCTGAAGGTCCGCTGGCAGAGACTGGAAGACAG...CCCAATCGTATAAAATGCTGAACTGGTTTGTTTAGCACAAGCAAGAGGCAGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR GCA 90 bp | TGTTTCCAATGCCTATGGTTCCTACAAGCAGAACATGCCTGCCTCTTGCTTGTGCCTTGTAGCAGATCCTaGCCTCCTGTATCACGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: CFQCLWFLQAEHACLLLVPCSRS*PPVSRR Trigger: TCTACGTGATACAGGAGGGCAGGATCTGCTACAAGG...CACAAGCAAGAGGCAGGCATGTTCTGCTTGTAGGAACCATAGGCATTGGAAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR CCA 90 bp | CAGGTCAAAGGTAAAAGACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGGGACAAACCAGAAGTACTaGATGCTGAAGAAGGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: QVKGKRHLYWCGKVPSLGTNQKY*MLKKVG Trigger: CCCCACCTTCTTCAGCATCCAGTACTTCTGGTTTGT...CCCCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTTTACCTTTGACCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
||
| CDS-3UTR CCA 90 bp | ACCAGAAGGTGGACACTCTGGATTGGTCTCTGCTGTGGGAGCAGTGTGGAGCTGACGAGTCTCTTGAACTaGTCAAATTTGAGAAGAAAT | + |
|
Preference number: 4 (lower is better) Translates to: TRRWTLWIGLCCGSSVELTSLLN*SNLRRN Trigger: ATTTCTTCTCAAATTTGACCAGTTCAAGAGACTCGT...CAGCTCCACACTGCTCCCACAGCAGAGACCAATCCAGAGTGTCCACCTTCTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR CCA 90 bp | TGCCTGCCTCTTGCTTGTGCTAAACAAACCAGTTCAGCATTTTATACGATTGGGAAGCCCAGCCATCTGTaGCGTGAGCTTCTTCAATGT | + |
|
Preference number: 4 (lower is better) Translates to: CLPLACAKQTSSAFYTIGKPSHL*RELLQC Trigger: ACATTGAAGAAGCTCACGCCACAGATGGCTGGGCTT...CCCAATCGTATAAAATGCTGAACTGGTTTGTTTAGCACAAGCAAGAGGCAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR GCA 90 bp | TCCAATGCTATCGAACACAAAAGACCAGTAAGAGACTGTGACCCAGGAGGACAGGAAATGAAGGTCAGGTaGAACTGCCAAAGTTCAACA | + |
|
Preference number: 4 (lower is better) Translates to: SNAIEHKRPVRDCDPGGQEMKVR*NCQSST Trigger: TGTTGAACTTTGGCAGTTGCACCTGACCTTCATTTC...CTGTCCTCCTGGGTCACAGTCTCTTACTGGTCTTTTGTGTTCGATAGCATTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR CAA 72 bp | TCTGCTGTGGGAGCAGTGTGGAGCTGTAACTTACTTTaGCTAACAGCTCAGCATTGCTTTATTTCTGGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: SAVGAVWSCNLL*LTAQHCFISGC Trigger: ACAACCAGAAATAAAGCAATGCTGAGCTGTTAGCAAAAGTAAGTTACAGCTCCACACTGCTCCCACAGCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| 3UTR CAA 72 bp | TGCCTATGGTTCCTACAAGCAGAACATGCCTGCCTCTaGCTTGTGCTAAACAAACCAGTTCAGCATTTTATA | + |
|
Preference number: 4 (lower is better) Translates to: CLWFLQAEHACL*LVLNKPVQHFI Trigger: TATAAAATGCTGAACTGGTTTGTTTAGCACAAGCAAGAGGCAGGCATGTTCTGCTTGTAGGAACCATAGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS-3UTR TCA 90 bp | ATCTCAACAGATTTCAATCTTTCGGCCAGAAAAGTGTTTCCAATGCCTATGGTTAAATTTGAGAAGAAATaGAGGTCAGGTGCAACTGCC | + |
|
Preference number: 4 (lower is better) Translates to: ISTDFNLSARKVFPMPMVKFEKK*RSGATA Trigger: GGCAGTTGCACCTGACCTTCATTTCTTCTCAAATTT...AACCATAGGCATTGGAAACACTTTTCTGGCCGAAAGATTGAAATCTGTTGAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
||
| CDS GCA 90 bp | AACAGCGTCATTAGCACCTTGCCTACAGCCACCTCCAAGGCCACCTaGAGGAATATCACAAGCCGCTTCAGCCACAGCCATAGCTGGGGC | + |
|
Preference number: 5 (lower is better) Translates to: NSVISTLPTATSKAT*RNITSRFSHSHSWG Trigger: GCCCCAGCTATGGCTGTGGCTGAAGCGGCTTGTGATATTCCTGCAGGTGGCCTTGGAGGTGGCTGTAGGCAAGGTGCTAATGACGCTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082426.11 ENSMUST00000106748.2 ENSMUST00000129138.2 ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
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| CDS-3UTR CAA 90 bp | TTCCAGGACAGCTCGGACTTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTACCGCCAGGATGCTCTGTTaGACTCTCCCTGGGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: FQDSSDFLRIVVPRASFTARMLC*TLPGNS Trigger: GCTGTTCCCAGGGAGAGTCAAACAGAGCATCCTGGC...GGTAAAGCTGGCCCTTGGAACTACAATCCTGAGGAAGTCCGAGCTGTCCTGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
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| CDS TCA 90 bp | AGGTGCAACTGCCAAAGTTCAACACCAGGGGCCTGCTGCCTTGAATaGAATCCCAGATGTTGCACTTCTGTCCTGAGAGGCAGACCACGG | + |
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Preference number: 5 (lower is better) Translates to: RCNCQSSTPGACCLE*NPRCCTSVLRGRPR Trigger: CCGTGGTCTGCCTCTCAGGACAGAAGTGCAACATCTGGGATTTCATTCAAGGCAGCAGGCCCCTGGTGTTGAACTTTGGCAGTTGCACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
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| CDS TCA 90 bp | GGTCAGGTGCAACTGCCAAAGTTCAACACCAGGGGCCTGCTGCCTTaGATGAAATCCCAGATGTTGCACTTCTGTCCTGAGAGGCAGACC | + |
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Preference number: 5 (lower is better) Translates to: GQVQLPKFNTRGLLP*MKSQMLHFCPERQT Trigger: GGTCTGCCTCTCAGGACAGAAGTGCAACATCTGGGATTTCATTCAAGGCAGCAGGCCCCTGGTGTTGAACTTTGGCAGTTGCACCTGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| CDS-3UTR CAA 90 bp | AAAGACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGGGAGCCTTCCTGCTGGCCAGGATGCTCTGTTaGACTCTCCCTGGGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: KDICTGVGKYQAWGAFLLARMLC*TLPGNS Trigger: GCTGTTCCCAGGGAGAGTCAAACAGAGCATCCTGGC...CAGCAGGAAGGCTCCCCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
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| CDS-3UTR CAA 90 bp | CTTTTCCAGGACAGCTCGGACTTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTGCCAGGATGCTCTGTTaGACTCTCCCTGGGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: LFQDSSDFLRIVVPRASFARMLC*TLPGNS Trigger: GCTGTTCCCAGGGAGAGTCAAACAGAGCATCCTGGC...AAAGCTGGCCCTTGGAACTACAATCCTGAGGAAGTCCGAGCTGTCCTGGAAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
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| CDS-3UTR CAA 90 bp | CACAGGTCAAAGGTAAAAGACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGAAGGTGGGGACCCAGTaGTCAGGGGCGAATCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: HRSKVKDICTGVGKYQAWKVGTQ*SGANRG Trigger: CCCCCGATTCGCCCCTGACAACTGGGTCCCCACCTT...CCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTTTACCTTTGACCTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
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| CDS-3UTR CAA 90 bp | TCCAATGCTATCGAACACAAAAGACCAGTAAGAGACTGTGACCCAGGAGGACAGTGCTCTGGTTCTGCATaGTGTCCACCACCACAGGGC | + |
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Preference number: 5 (lower is better) Translates to: SNAIEHKRPVRDCDPGGQCSGSA*CPPPQG Trigger: GCCCTGTGGTGGTGGACACAATGCAGAACCAGAGCA...CTGTCCTCCTGGGTCACAGTCTCTTACTGGTCTTTTGTGTTCGATAGCATTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| CDS-3UTR CAA 90 bp | AGGAAATCGGCTGTGGAGGCAAAGTCATCTACGAGTCTCTTGAACTGGTCAAATGCCAGGATGCTCTGTTaGACTCTCCCTGGGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: RKSAVEAKSSTSLLNWSNARMLC*TLPGNS Trigger: GCTGTTCCCAGGGAGAGTCAAACAGAGCATCCTGGC...ATTTGACCAGTTCAAGAGACTCGTAGATGACTTTGCCTCCACAGCCGATTTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
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| CDS-3UTR CAA 90 bp | GACTTCCTCAGGATTGTAGTTCCAAGGGCCAGCTTTACCCTGTGGCGTGAGCTTATGAAATCCCAGATGTaGCACTTCTGTCCTGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: DFLRIVVPRASFTLWRELMKSQM*HFCPER Trigger: CCTCTCAGGACAGAAGTGCAACATCTGGGATTTCAT...AAGCTCACGCCACAGGGTAAAGCTGGCCCTTGGAACTACAATCCTGAGGAAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150974.2 |
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| CDS-3UTR CAA 90 bp | AAAGACATCTGTACTGGTGTGGGAAAGTACCAAGCTTGGGGAGCCTTCCTGCTGTCATCTACGAGTCTCTaGAACTGGTCAAATTTGAGA | + |
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Preference number: 5 (lower is better) Translates to: KDICTGVGKYQAWGAFLLSSTSL*NWSNLR Trigger: TCTCAAATTTGACCAGTTCAAGAGACTCGTAGATGA...CAGCAGGAAGGCTCCCCAAGCTTGGTACTTTCCCACACCAGTACAGATGTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| CDS-3UTR CAA 90 bp | ATCTCAACAGATTTCAATCTTTCGGCCAGAAAAGTGTTTCCAATGCCTATGGTTTGCCGGATGTCCACGTaGTTCTTAAAAGCCCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: ISTDFNLSARKVFPMPMVCRMST*FLKAQP Trigger: TGGCTGGGCTTTTAAGAACAACGTGGACATCCGGCA...AACCATAGGCATTGGAAACACTTTTCTGGCCGAAAGATTGAAATCTGTTGAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| CDS-3UTR CAA 90 bp | ATCTCAACAGATTTCAATCTTTCGGCCAGAAAAGTGTTTCCAATGCCTATGGTTATGAAATCCCAGATGTaGCACTTCTGTCCTGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: ISTDFNLSARKVFPMPMVMKSQM*HFCPER Trigger: CCTCTCAGGACAGAAGTGCAACATCTGGGATTTCAT...AACCATAGGCATTGGAAACACTTTTCTGGCCGAAAGATTGAAATCTGTTGAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082426.11 |
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| CDS TCA 72 bp | GCCTTGAATGAAATCCCAGATGTTGCACTTCTGTCCTaGGAGGCAGACCACGGTGCAGTTGGGGGCCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: ALNEIPDVALLS*EADHGAVGGQP Trigger: GGGCTGGCCCCCAACTGCACCGTGGTCTGCCTCTCAGGACAGAAGTGCAACATCTGGGATTTCATTCAAGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
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| CDS TCA 72 bp | CCCTTGAATGAAATCCCAGATGTTGCACTTCTGTCCTaGGAGGCAGACCACGGTGCAGTTGGGGGCCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: PLNEIPDVALLS*EADHGAVGGQP Trigger: GGGCTGGCCCCCAACTGCACCGTGGTCTGCCTCTCAGGACAGAAGTGCAACATCTGGGATTTCATTCAAGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106748.2 |
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| CDS CCA 72 bp | CAGGGGCCTGCTGCCTTCAGGACAAACCAGAAGTACTaGATGCTGAAGAAGGTGGGGACCCAGTTGTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: QGPAAFRTNQKY*MLKKVGTQLSG Trigger: CCCTGACAACTGGGTCCCCACCTTCTTCAGCATCCAGTACTTCTGGTTTGTCCTGAAGGCAGCAGGCCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 |
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| CDS CCA 72 bp | CTCTGCCAGCGGACCTTCAGGACAAACCAGAAGTACTaGATGCTGAAGAAGGTGGGGACCCAGTTGTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: LCQRTFRTNQKY*MLKKVGTQLSG Trigger: CCCTGACAACTGGGTCCCCACCTTCTTCAGCATCCAGTACTTCTGGTTTGTCCTGAAGGTCCGCTGGCAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000082426.11 ENSMUST00000106748.2 ENSMUST00000129138.2 ENSMUST00000150974.2 |
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| CDS TCA 72 bp | ATCTTGAATGAAATCCCAGATGTTGCACTTCTGTCCTaGGAGGCAGACCACGGTGCAGTTGGGGGCCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: ILNEIPDVALLS*EADHGAVGGQP Trigger: GGGCTGGCCCCCAACTGCACCGTGGTCTGCCTCTCAGGACAGAAGTGCAACATCTGGGATTTCATTCAAGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129138.2 |
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| CDS TCA 72 bp | CTGCTGCCTTCAGGACAAACCAGAAGTACTGGATGCTaGAGAAGGTGGGGACCCAGTTGTCAGGGGCGAATC | + |
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Preference number: 6 (lower is better) Translates to: LLPSGQTRSTGC*RRWGPSCQGRI Trigger: GATTCGCCCCTGACAACTGGGTCCCCACCTTCTTCAGCATCCAGTACTTCTGGTTTGTCCTGAAGGCAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000134366.8 ENSMUST00000147709.2 |
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| CDS GCA 72 bp | ATTAGCACCTTGCCTACAGCCACCTCCAAGGCCACCTaGAGGAATATCACAAGCCGCTTCAGCCACAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: ISTLPTATSKAT*RNITSRFSHSH Trigger: ATGGCTGTGGCTGAAGCGGCTTGTGATATTCCTGCAGGTGGCCTTGGAGGTGGCTGTAGGCAAGGTGCTAAT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000082426.11 ENSMUST00000106748.2 ENSMUST00000129138.2 ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
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| CDS CAA 72 bp | TGTTTGACTCTCCCTGGGAACAGCGTCATTAGCACCTaGCCTACAGCCACCTCCAAGGCCACCTGCAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: CLTLPGNSVIST*PTATSKATCRN Trigger: ATTCCTGCAGGTGGCCTTGGAGGTGGCTGTAGGCAAGGTGCTAATGACGCTGTTCCCAGGGAGAGTCAAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000082426.11 ENSMUST00000106748.2 ENSMUST00000129138.2 ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
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| CDS CAA 90 bp | AGGATGCTCTGTTTGACTCTCCCTGGGAACAGCGTCATTAGCACCTaGCCTACAGCCACCTCCAAGGCCACCTGCAGGAATATCACAAGC | + |
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Preference number: 6 (lower is better) Translates to: RMLCLTLPGNSVIST*PTATSKATCRNITS Trigger: GCTTGTGATATTCCTGCAGGTGGCCTTGGAGGTGGCTGTAGGCAAGGTGCTAATGACGCTGTTCCCAGGGAGAGTCAAACAGAGCATCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000082426.11 ENSMUST00000106748.2 ENSMUST00000129138.2 ENSMUST00000134366.8 ENSMUST00000147709.2 ENSMUST00000150974.2 |
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| CDS TCA 72 bp | TGCCAAAGTTCAACACCAGGGGCCTGCTGCCTTGAATaGAATCCCAGATGTTGCACTTCTGTCCTGAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: CQSSTPGACCLE*NPRCCTSVLRG Trigger: GCCTCTCAGGACAGAAGTGCAACATCTGGGATTTCATTCAAGGCAGCAGGCCCCTGGTGTTGAACTTTGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082426.11 ENSMUST00000150974.2 |
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