Pregenerated sensors for DHX9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042699Ensembl transcript IDs: ENSMUST00000042141.12, ENSMUST00000186380.7, ENSMUST00000186966.7, ENSMUST00000188345.2, ENSMUST00000190544.7
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TTGTTTCTGGCCCATATTCGTCACCACATATTAGGTTaGAATTTGCATCATCATCTTCACCACCATCATCCT | + |
|
Preference number: 3 (lower is better) Translates to: LFLAHIRHHILG*NLHHHLHHHHP Trigger: AGGATGATGGTGGTGAAGATGATGATGCAAATTGCAACCTAATATGTGGTGACGAATATGGGCCAGAAACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186966.7 ENSMUST00000190544.7 |
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| CDS-3UTR CCA 90 bp | ACAAGGGCTTCAAGGGGGTCAAAGGCCACTGGCTTTCAGGGGAACAACATCCACTCTTTTTGGAAATACTaGTTCAGACGAGCCTTAGCA | + |
|
Preference number: 4 (lower is better) Translates to: TRASRGSKATGFQGNNIHSFWKY*FRRALA Trigger: TGCTAAGGCTCGTCTGAACCAGTATTTCCAAAAAGA...GTGGATGTTGTTCCCCTGAAAGCCAGTGGCCTTTGACCCCCTTGAAGCCCTTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000190544.7 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCCACTGCAACTGCACTaGTCCTTCTGGGCTGTGTCA | + |
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Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFPLQLH*SFWAVS Trigger: TGACACAGCCCAGAAGGATCAGTGCAGTTGCAGTGG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCATCTTGGGAGGTCGTaGACCATCGCCGTACCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFHLGRS*TIAVPY Trigger: GTAAGGTACGGCGATGGTCCACGACCTCCCAAGATG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGTTGATACCAGCAGCTaGGGGCCTAGAAATCTGTCG | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFVDTSS*GPRNLS Trigger: CGACAGATTTCTAGGCCCTCAGCTGCTGGTATCAAC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR GCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCCCTTCTGCAGCACTTaGTGTGCTATCAGAGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFPFCST*CAIRGV Trigger: GACACCTCTGATAGCACAGCAAGTGCTGCAGAAGGG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGTCGCTAAGTATGGGTaGGGGTGGTACAATCCCAAC | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFVAKYG*GWYNPN Trigger: GTTGGGATTGTACCACCCCCACCCATACTTAGCGAC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| 3UTR CAA 72 bp | TTTGTTTCTGGCCCATATTCGTCACCACATATTAGGTaGCAATTTGCATCATCATCTTCACCACCATCATCC | + |
|
Preference number: 4 (lower is better) Translates to: FVSGPYSSPHIR*QFASSSSPPSS Trigger: GGATGATGGTGGTGAAGATGATGATGCAAATTGCAACCTAATATGTGGTGACGAATATGGGCCAGAAACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186966.7 ENSMUST00000190544.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGCTCGACTACAAAGGTaGAAACAGAACCCAGGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFARLQR*KQNPGR Trigger: ACGACCTGGGTTCTGTTTCCACCTTTGTAGTCGAGC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTTTCTGCTTCTGCTTTaGGAGCCAGATGAGGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFFLLLL*EPDEEE Trigger: TTCCTCCTCATCTGGCTCTCAAAGCAGAAGCAGAAA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000042141.12 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTCCTCACGAGGAATCTaGGAATGGAGAGGTAGAATC | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFSSRGI*EWRGRI Trigger: GATTCTACCTCTCCATTCTCAGATTCCTCGTGAGGA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTACCACATTTTGCAGCTaGAGCTCCAAATCTGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFTTFCS*SSKSGE Trigger: TTCTCCAGATTTGGAGCTTCAGCTGCAAAATGTGGT...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTCATCCACAATAACATaGCTGATTCCTCGAATGCCG | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFSSTIT*LIPRMP Trigger: CGGCATTCGAGGAATCAGTCATGTTATTGTGGATGA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCCTTTGGAGGAGGAATaGATTGAGTCATCTGAATGC | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFPLEEE*IESSEC Trigger: GCATTCAGATGACTCAATTCATTCCTCCTCCAAAGG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR GCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTAGATCCATGTTCACGTaGGAAAATCCTTCTGCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFRSMFT*ENPSAK Trigger: CTTGGCAGAAGGATTTTCGCACGTGAACATGGATCT...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTAGAAGGATCAACAGGTaGGGGCACAATTTCAAGATC | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFRRINR*GHNFKI Trigger: GATCTTGAAATTGTGCCCCCACCTGTTGATCCTTCT...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGCTCAACTTTGTTTCTaGCCCATATTCGTCACCACA | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFAQLCF*PIFVTT Trigger: TGTGGTGACGAATATGGGCCAGAAACAAAGTTGAGC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTATTTTCTTCTGCTTTaGGAGCCAGATGAGGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFYFLLL*EPDEEE Trigger: TTCCTCCTCATCTGGCTCTCAAAGCAGAAGAAAATA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186380.7 |
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| CDS-3UTR GCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGTGTCACAACAATATTaGATTCGGCTGCTCTGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFVSQQY*IRLLCH Trigger: ATGACAGAGCAGCCGAATGCAATATTGTTGTGACAC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR GCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCATTCAACTGAGACATaGTCAACTTTGTTTCTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFHSTET*STLFLA Trigger: GGCCAGAAACAAAGTTGAGCATGTCTCAGTTGAATG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR GCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTCTATAAACACAATCTaGCCATCCGACTGGACTTTC | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFSINTI*PSDWTF Trigger: GAAAGTCCAGTCGGATGGGCAGATTGTGTTTATAGA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGTGCATCCTTTTTATTaGTGGAATTGCCCATACCAG | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFVHPFY*WNCPYQ Trigger: CTGGTATGGGCAATTCCACCAATAAAAAGGATGCAC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTCCCACGGTAAGAGTTaGGGCTTATACTATAACCTT | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFSHGKS*GLYYNL Trigger: AAGGTTATAGTATAAGCCCCAACTCTTACCGTGGGA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCTCGAACCTCACACATaGATTTCTGTCTGTTTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFLEPHT*ISVCFC Trigger: ACAAAAACAGACAGAAATTCATGTGTGAGGTTCGAG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTTCTGCCAAGCTGCTTaGTATAAATGGTCATTTCTG | + |
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Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFFCQAA*YKWSFL Trigger: CAGAAATGACCATTTATATCAAGCAGCTTGGCAGAA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR TCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGATAAAAGAGCCACGTaGTCAGAAAATCTGTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFDKRAT*SENLFP Trigger: TGGAAACAGATTTTCTGATCACGTGGCTCTTTTATC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR GCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTATTATTTTCTGCTTCTaGTTTGAGAGCCAGATGAGG | + |
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Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFIIFCF*FESQMR Trigger: CCTCATCTGGCTCTCAAAGCAGAAGCAGAAAATAAT...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042141.12 |
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| CDS-3UTR GCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGACGCAGAAGTTTTATaGTCAGAGCAATTTCATGCA | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFDAEVL*SEQFHA Trigger: TGCATGAAATTGCTCTGAGCATAAAACTTCTGCGTC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTCTTTTTGGAAATACTaGTTCAGACGAGCCTTAGCA | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFSFWKY*FRRALA Trigger: TGCTAAGGCTCGTCTGAACCAGTATTTCCAAAAAGA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTACAAAACATTATACTaGCATGAGGGCGTGGAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFYKTLY*HEGVEV Trigger: TACTTCCACGCCCTCATGCCAGTATAATGTTTTGTA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR GCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTAATATTGCATTCGGCTaGTCTGTCATTCTGGATAAA | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFNIAFG*SVILDK Trigger: TTTATCCAGAATGACAGAGCAGCCGAATGCAATATT...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR GCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCTCAGAGCAATTTCATaGAATGGTGTTCTAAACATC | + |
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Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFLRAIS*NGVLNI Trigger: GATGTTTAGAACACCATTGCATGAAATTGCTCTGAG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCTGAAGCTCCAAATCTaGAGAAAGGAAAACTTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFLKLQI*RKENFV Trigger: TACAAAGTTTTCCTTTCTCCAGATTTGGAGCTTCAG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTATCCAAAATGTACTGTaGAACTTGTGTGGTTTTACC | + |
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Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFIQNVL*NLCGFT Trigger: GGTAAAACCACACAAGTTCCACAGTACATTTTGGAT...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCTTTTTCTTGTCCTTTaGAGGAGGAATGAATTGAGT | + |
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Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFLFLVL*RRNELS Trigger: ACTCAATTCATTCCTCCTCCAAAGGACAAGAAAAAG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGAGTCAACTCATCATTaGCATCTAAAGCATCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFESTHH*HLKHQV Trigger: AACTTGATGCTTTAGATGCCAATGATGAGTTGACTC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR GCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCACCACATATTAGGTTaGAATTTGCATCATCATCTT | + |
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Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFHHILG*NLHHHL Trigger: AAGATGATGATGCAAATTGCAACCTAATATGTGGTG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTAATGTTAAGTATAACTaGCATAGAAGGATCAACAGG | + |
|
Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFNVKYN*HRRINR Trigger: CCTGTTGATCCTTCTATGCCAGTTATACTTAACATT...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CCA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTTTACAGGGTCCAATTaGCTGATAATATTTGGTTGT | + |
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Preference number: 4 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFFTGSN*LIIFGC Trigger: ACAACCAAATATTATCAGCCAATTGGACCCTGTAAA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 34% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTCATATCGGGCCATCTaGGGAGGTCGTGGACCATCG | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFSYRAI*GGRGPS Trigger: CGATGGTCCACGACCTCCCAAGATGGCCCGATATGA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGCAATAAAGCTCCTGTaGTGGTCGGGACCCACTTGG | + |
|
Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFAIKLL*WSGPTW Trigger: CCAAGTGGGTCCCGACCACAACAGGAGCTTTATTGC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGTTTCTGTAGCCTCCTaGGGAACCTCCTCTATACCC | + |
|
Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFVSVAS*GTSSIP Trigger: GGGTATAGAGGAGGTTCCCAAGGAGGCTACAGAAAC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCCCTCCTCCTCTTCCTaGTCCAAAATAACCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFPSSSS*SKITTS Trigger: GGAGGTGGTTATTTTGGACAAGGAAGAGGAGGAGGG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGAGGTTCGATTGCCTTaGCAAGGAATTGGCCAATTC | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFEVRLP*QGIGQF Trigger: GAATTGGCCAATTCCTTGCAAAGGCAATCGAACCTC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTCACTCCCACTGCATTTaGTCTCTGAGATGGTTCAAA | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFHSHCI*SLRWFK Trigger: TTTGAACCATCTCAGAGACAAAATGCAGTGGGAGTG...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTGTGTCACAACAATATaGCATTCGGCTGCTCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFCVTTI*HSAALS Trigger: TGACAGAGCAGCCGAATGCAATATTGTTGTGACACA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTCCTCTGCTCAAGGTTaGTTTTTGATGCCCATACAG | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFSSAQG*FLMPIQ Trigger: CTGTATGGGCATCAAAAACAAACCTTGAGCAGAGGA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTAATGTACTGTGGAACTaGTGTGGTTTTACCACAACC | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFNVLWN*CGFTTT Trigger: GGTTGTGGTAAAACCACACAAGTTCCACAGTACATT...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGTGGACAAAATAACCTaGGTTACTCCATCTGGTACT | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFVDKIT*VTPSGT Trigger: AGTACCAGATGGAGTAACCAAGGTTATTTTGTCCAC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGGAGTCAACTCATCATaGGCATCTAAAGCATCAAGT | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFGVNSS*ASKASS Trigger: ACTTGATGCTTTAGATGCCAATGATGAGTTGACTCC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTAAGGTCCATGCTTATTaGTTCTGTAGAAGCATAAGC | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFKVHAY*FCRSIS Trigger: GCTTATGCTTCTACAGAACAAATAAGCATGGACCTT...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTTATCCTTCTTTTTCTaGTCCTTTGGAGGAGGAATG | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFLSFFF*SFGGGM Trigger: CATTCCTCCTCCAAAGGACAAGAAAAAGAAGGATAA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTATATTAGGTTGCAATTaGCATCATCATCTTCACCAC | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFILGCN*HHHLHH Trigger: GTGGTGAAGATGATGATGCAAATTGCAACCTAATAT...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTTCACCACATATTAGGTaGCAATTTGCATCATCATCT | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFSPHIR*QFASSS Trigger: AGATGATGATGCAAATTGCAACCTAATATGTGGTGA...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS-3UTR CAA 90 bp | TGTTGCTTGAAACTACACATGAACTACAGATTAAGTGGGAAATGGGTTTACTTTGCTGATAATATTTGGTaGTTTGGACACTTCAACAAC | + |
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Preference number: 5 (lower is better) Translates to: CCLKLHMNYRLSGKWVYFADNIW*FGHFNN Trigger: GTTGTTGAAGTGTCCAAACAACCAAATATTATCAGC...AAAGTAAACCCATTTCCCACTTAATCTGTAGTTCATGTGTAGTTTCAAGCAACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS CCA 72 bp | CTCCCCCGCCACCACCATAATTCCCACGGTAAGAGTTaGGGCTTATACTATAACCTTCCCCACCACCATAAC | + |
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Preference number: 6 (lower is better) Translates to: LPRHHHNSHGKS*GLYYNLPHHHN Trigger: GTTATGGTGGTGGGGAAGGTTATAGTATAAGCCCCAACTCTTACCGTGGGAATTATGGTGGTGGCGGGGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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| CDS CCA 72 bp | ACTTGCTGTGCTATCAGAGGTGTCGCTAAGTATGGGTaGGGGTGGTACAATCCCAACAGCTGGAACTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: TCCAIRGVAKYG*GWYNPNSWNFF Trigger: GAAGAAGTTCCAGCTGTTGGGATTGTACCACCCCCACCCATACTTAGCGACACCTCTGATAGCACAGCAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 ENSMUST00000186966.7 ENSMUST00000188345.2 |
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| CDS CCA 72 bp | ATTGTGTTTAGCATATGTTCATTTACAGGGTCCAATTaGCTGATAATATTTGGTTGTTTGGACACTTCAACA | + |
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Preference number: 6 (lower is better) Translates to: IVFSICSFTGSN*LIIFGCLDTST Trigger: TGTTGAAGTGTCCAAACAACCAAATATTATCAGCCAATTGGACCCTGTAAATGAACATATGCTAAACACAAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042141.12 ENSMUST00000186380.7 |
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